Multiple sequence alignment - TraesCS2B01G308100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G308100 chr2B 100.000 3236 0 0 1 3236 440825370 440828605 0.000000e+00 5976.0
1 TraesCS2B01G308100 chr2B 90.647 139 13 0 3098 3236 441071263 441071401 5.510000e-43 185.0
2 TraesCS2B01G308100 chr2D 94.863 2161 76 10 648 2801 371701383 371703515 0.000000e+00 3343.0
3 TraesCS2B01G308100 chr2D 89.250 400 20 6 1 380 371700990 371701386 2.260000e-131 479.0
4 TraesCS2B01G308100 chr2D 89.286 140 15 0 3097 3236 155726395 155726256 3.320000e-40 176.0
5 TraesCS2B01G308100 chr2D 88.489 139 16 0 3098 3236 39834468 39834606 5.550000e-38 169.0
6 TraesCS2B01G308100 chr2D 100.000 33 0 0 2825 2857 371703517 371703549 9.690000e-06 62.1
7 TraesCS2B01G308100 chr2A 94.131 2164 82 10 663 2802 502335776 502337918 0.000000e+00 3251.0
8 TraesCS2B01G308100 chr2A 89.141 396 14 11 1 379 502335385 502335768 1.760000e-127 466.0
9 TraesCS2B01G308100 chr2A 100.000 34 0 0 2824 2857 502337918 502337951 2.700000e-06 63.9
10 TraesCS2B01G308100 chr1B 91.958 1144 82 8 1286 2427 248233450 248234585 0.000000e+00 1594.0
11 TraesCS2B01G308100 chr3A 91.594 1142 84 2 1286 2427 688139051 688140180 0.000000e+00 1567.0
12 TraesCS2B01G308100 chr3A 96.212 264 5 1 383 646 512035497 512035755 8.300000e-116 427.0
13 TraesCS2B01G308100 chrUn 92.019 426 32 2 2004 2427 90338667 90339092 5.980000e-167 597.0
14 TraesCS2B01G308100 chrUn 92.019 426 32 2 2004 2427 290522892 290523317 5.980000e-167 597.0
15 TraesCS2B01G308100 chrUn 88.816 152 8 5 2866 3010 86889191 86889340 9.230000e-41 178.0
16 TraesCS2B01G308100 chrUn 88.816 152 8 5 2866 3010 281878017 281877868 9.230000e-41 178.0
17 TraesCS2B01G308100 chr1A 92.216 334 24 1 2096 2427 9820058 9819725 3.780000e-129 472.0
18 TraesCS2B01G308100 chr5B 95.341 279 6 3 373 650 385190116 385190388 1.380000e-118 436.0
19 TraesCS2B01G308100 chr7A 95.849 265 6 2 383 647 512766572 512766831 1.070000e-114 424.0
20 TraesCS2B01G308100 chr7A 95.076 264 8 1 383 646 365105297 365105039 8.360000e-111 411.0
21 TraesCS2B01G308100 chr7A 90.647 139 13 0 3098 3236 570295344 570295206 5.510000e-43 185.0
22 TraesCS2B01G308100 chr7B 95.094 265 8 1 383 647 72765096 72765355 2.320000e-111 412.0
23 TraesCS2B01G308100 chr6B 94.737 266 9 1 383 648 125640395 125640135 3.010000e-110 409.0
24 TraesCS2B01G308100 chr6B 93.962 265 11 1 383 647 442430145 442429886 2.340000e-106 396.0
25 TraesCS2B01G308100 chr6B 88.489 139 15 1 3098 3236 720856403 720856266 2.000000e-37 167.0
26 TraesCS2B01G308100 chr4B 95.385 260 7 1 387 646 22896719 22896465 3.010000e-110 409.0
27 TraesCS2B01G308100 chr4B 93.939 264 11 1 383 646 126596128 126595870 8.410000e-106 394.0
28 TraesCS2B01G308100 chr4B 92.424 264 15 1 383 646 493646513 493646255 3.940000e-99 372.0
29 TraesCS2B01G308100 chr4B 89.189 148 11 2 2866 3008 10472405 10472258 2.570000e-41 180.0
30 TraesCS2B01G308100 chr5D 86.415 265 29 4 383 646 104580584 104580326 1.900000e-72 283.0
31 TraesCS2B01G308100 chr5D 88.889 153 12 3 2862 3010 526705294 526705445 1.980000e-42 183.0
32 TraesCS2B01G308100 chr7D 86.235 247 27 4 383 628 389184068 389183828 8.900000e-66 261.0
33 TraesCS2B01G308100 chr7D 89.474 152 10 3 2862 3008 184387546 184387696 1.530000e-43 187.0
34 TraesCS2B01G308100 chr4D 84.979 233 25 5 415 646 215439914 215440137 9.030000e-56 228.0
35 TraesCS2B01G308100 chr3D 91.333 150 8 2 2866 3010 381006830 381006979 1.970000e-47 200.0
36 TraesCS2B01G308100 chr5A 88.816 152 12 2 2862 3008 680902765 680902614 7.130000e-42 182.0
37 TraesCS2B01G308100 chr5A 88.489 139 14 1 3098 3236 602921868 602921732 2.000000e-37 167.0
38 TraesCS2B01G308100 chr1D 89.262 149 10 3 2866 3009 481423089 481422942 7.130000e-42 182.0
39 TraesCS2B01G308100 chr6A 89.437 142 11 3 3097 3236 490578975 490579114 3.320000e-40 176.0
40 TraesCS2B01G308100 chr6A 87.500 144 18 0 3093 3236 490512884 490513027 2.000000e-37 167.0
41 TraesCS2B01G308100 chr3B 88.235 153 11 4 2862 3008 16984395 16984546 3.320000e-40 176.0
42 TraesCS2B01G308100 chr6D 88.652 141 13 2 3098 3236 470449227 470449366 5.550000e-38 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G308100 chr2B 440825370 440828605 3235 False 5976.0 5976 100.000000 1 3236 1 chr2B.!!$F1 3235
1 TraesCS2B01G308100 chr2D 371700990 371703549 2559 False 1294.7 3343 94.704333 1 2857 3 chr2D.!!$F2 2856
2 TraesCS2B01G308100 chr2A 502335385 502337951 2566 False 1260.3 3251 94.424000 1 2857 3 chr2A.!!$F1 2856
3 TraesCS2B01G308100 chr1B 248233450 248234585 1135 False 1594.0 1594 91.958000 1286 2427 1 chr1B.!!$F1 1141
4 TraesCS2B01G308100 chr3A 688139051 688140180 1129 False 1567.0 1567 91.594000 1286 2427 1 chr3A.!!$F2 1141

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
922 947 0.027586 CCCACGCGCTTATAACTTGC 59.972 55.0 5.73 0.0 0.0 4.01 F
942 967 0.248990 TTGCTTGCTTGCCTCGTTTG 60.249 50.0 0.00 0.0 0.0 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1962 1992 0.888736 CCAGCCGTTCAATGGTGTCA 60.889 55.0 0.0 0.0 0.0 3.58 R
2873 2927 0.916809 CCGGGGGTACATTCTCCTTT 59.083 55.0 0.0 0.0 0.0 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 34 3.870633 ATAAGAGAGTCCGTGGTGAAC 57.129 47.619 0.00 0.00 0.00 3.18
46 49 2.094854 GGTGAACAGATAGGAACGACGT 60.095 50.000 0.00 0.00 0.00 4.34
165 183 1.406898 CAGACGAGCAGCAGGAGATAA 59.593 52.381 0.00 0.00 0.00 1.75
187 205 1.156322 TTCCTCCTCCTCCTCCCACT 61.156 60.000 0.00 0.00 0.00 4.00
250 271 4.507916 CGCGGAGGAGGAGGAGGA 62.508 72.222 0.00 0.00 0.00 3.71
255 276 4.851214 AGGAGGAGGAGGAGGCGC 62.851 72.222 0.00 0.00 0.00 6.53
314 335 1.374758 CGCCGCCCTTATCATCTCC 60.375 63.158 0.00 0.00 0.00 3.71
315 336 1.003233 GCCGCCCTTATCATCTCCC 60.003 63.158 0.00 0.00 0.00 4.30
316 337 1.293498 CCGCCCTTATCATCTCCCG 59.707 63.158 0.00 0.00 0.00 5.14
321 342 1.007271 CTTATCATCTCCCGCGCGT 60.007 57.895 29.95 10.01 0.00 6.01
357 378 2.357517 CCTCGCACTGTCACACCC 60.358 66.667 0.00 0.00 0.00 4.61
358 379 2.357517 CTCGCACTGTCACACCCC 60.358 66.667 0.00 0.00 0.00 4.95
359 380 3.883744 CTCGCACTGTCACACCCCC 62.884 68.421 0.00 0.00 0.00 5.40
379 400 2.074576 CCAGATGCACACACAAGAGAG 58.925 52.381 0.00 0.00 0.00 3.20
382 403 3.059120 CAGATGCACACACAAGAGAGTTG 60.059 47.826 0.00 0.00 0.00 3.16
383 404 1.667236 TGCACACACAAGAGAGTTGG 58.333 50.000 0.00 0.00 0.00 3.77
384 405 1.209261 TGCACACACAAGAGAGTTGGA 59.791 47.619 0.00 0.00 0.00 3.53
385 406 2.288666 GCACACACAAGAGAGTTGGAA 58.711 47.619 0.00 0.00 0.00 3.53
386 407 2.032178 GCACACACAAGAGAGTTGGAAC 59.968 50.000 0.00 0.00 0.00 3.62
387 408 2.285220 CACACACAAGAGAGTTGGAACG 59.715 50.000 0.00 0.00 0.00 3.95
388 409 1.867233 CACACAAGAGAGTTGGAACGG 59.133 52.381 0.00 0.00 0.00 4.44
389 410 1.202651 ACACAAGAGAGTTGGAACGGG 60.203 52.381 0.00 0.00 0.00 5.28
390 411 0.250338 ACAAGAGAGTTGGAACGGGC 60.250 55.000 0.00 0.00 0.00 6.13
391 412 0.035458 CAAGAGAGTTGGAACGGGCT 59.965 55.000 0.00 0.00 0.00 5.19
392 413 0.321996 AAGAGAGTTGGAACGGGCTC 59.678 55.000 0.00 0.00 0.00 4.70
393 414 1.446272 GAGAGTTGGAACGGGCTCG 60.446 63.158 3.27 3.27 43.02 5.03
408 429 3.314339 CTCGTCTACCGTGCTGAAG 57.686 57.895 0.00 0.00 37.94 3.02
409 430 0.179161 CTCGTCTACCGTGCTGAAGG 60.179 60.000 0.00 0.00 37.94 3.46
410 431 1.805945 CGTCTACCGTGCTGAAGGC 60.806 63.158 0.00 0.00 42.22 4.35
420 441 4.020617 CTGAAGGCACGGCAGGGA 62.021 66.667 0.00 0.00 32.37 4.20
421 442 3.965539 CTGAAGGCACGGCAGGGAG 62.966 68.421 0.00 0.00 32.37 4.30
425 446 4.840005 GGCACGGCAGGGAGCTAC 62.840 72.222 0.00 0.00 44.79 3.58
426 447 4.082523 GCACGGCAGGGAGCTACA 62.083 66.667 0.00 0.00 44.79 2.74
427 448 2.185350 CACGGCAGGGAGCTACAG 59.815 66.667 0.00 0.00 44.79 2.74
428 449 2.283966 ACGGCAGGGAGCTACAGT 60.284 61.111 0.00 0.00 44.79 3.55
429 450 1.000019 ACGGCAGGGAGCTACAGTA 60.000 57.895 0.00 0.00 44.79 2.74
430 451 1.038130 ACGGCAGGGAGCTACAGTAG 61.038 60.000 0.00 2.85 44.79 2.57
438 459 4.094684 GCTACAGTAGCCACGCAG 57.905 61.111 20.53 0.00 45.95 5.18
439 460 1.215647 GCTACAGTAGCCACGCAGT 59.784 57.895 20.53 0.00 45.95 4.40
450 471 2.434884 ACGCAGTGGGAATCGCAG 60.435 61.111 14.98 0.00 42.51 5.18
451 472 2.125552 CGCAGTGGGAATCGCAGA 60.126 61.111 0.00 0.00 45.75 4.26
452 473 1.741401 CGCAGTGGGAATCGCAGAA 60.741 57.895 0.00 0.00 43.58 3.02
453 474 1.699656 CGCAGTGGGAATCGCAGAAG 61.700 60.000 0.00 0.00 43.58 2.85
454 475 1.372087 GCAGTGGGAATCGCAGAAGG 61.372 60.000 0.00 0.00 43.58 3.46
455 476 1.078143 AGTGGGAATCGCAGAAGGC 60.078 57.895 0.00 0.00 43.58 4.35
456 477 1.377202 GTGGGAATCGCAGAAGGCA 60.377 57.895 0.00 0.00 43.58 4.75
457 478 1.377202 TGGGAATCGCAGAAGGCAC 60.377 57.895 0.00 0.00 43.58 5.01
458 479 1.078143 GGGAATCGCAGAAGGCACT 60.078 57.895 0.00 0.00 43.58 4.40
459 480 1.372087 GGGAATCGCAGAAGGCACTG 61.372 60.000 7.23 7.23 43.58 3.66
465 486 3.060615 CAGAAGGCACTGCAGGGC 61.061 66.667 33.26 33.26 40.86 5.19
470 491 3.813724 GGCACTGCAGGGCCCTAT 61.814 66.667 44.46 6.85 44.53 2.57
471 492 2.452064 GGCACTGCAGGGCCCTATA 61.452 63.158 44.46 15.86 44.53 1.31
472 493 1.072159 GCACTGCAGGGCCCTATAG 59.928 63.158 31.20 26.52 0.00 1.31
473 494 1.072159 CACTGCAGGGCCCTATAGC 59.928 63.158 28.13 24.96 0.00 2.97
474 495 1.384502 ACTGCAGGGCCCTATAGCA 60.385 57.895 28.37 28.37 0.00 3.49
475 496 1.072159 CTGCAGGGCCCTATAGCAC 59.928 63.158 27.10 12.87 35.96 4.40
484 505 4.770795 GGGCCCTATAGCACTATGTTATG 58.229 47.826 17.04 0.00 31.68 1.90
485 506 4.225267 GGGCCCTATAGCACTATGTTATGT 59.775 45.833 17.04 0.00 31.68 2.29
486 507 5.424252 GGGCCCTATAGCACTATGTTATGTA 59.576 44.000 17.04 0.00 31.68 2.29
487 508 6.338937 GGCCCTATAGCACTATGTTATGTAC 58.661 44.000 0.00 0.00 0.00 2.90
488 509 6.154706 GGCCCTATAGCACTATGTTATGTACT 59.845 42.308 0.00 0.00 0.00 2.73
489 510 7.036220 GCCCTATAGCACTATGTTATGTACTG 58.964 42.308 0.30 0.00 0.00 2.74
490 511 7.309867 GCCCTATAGCACTATGTTATGTACTGT 60.310 40.741 0.30 0.00 0.00 3.55
491 512 9.239551 CCCTATAGCACTATGTTATGTACTGTA 57.760 37.037 0.30 0.00 0.00 2.74
493 514 9.776158 CTATAGCACTATGTTATGTACTGTAGC 57.224 37.037 0.30 0.00 0.00 3.58
494 515 5.520632 AGCACTATGTTATGTACTGTAGCG 58.479 41.667 0.00 0.00 0.00 4.26
495 516 5.298527 AGCACTATGTTATGTACTGTAGCGA 59.701 40.000 0.00 0.00 0.00 4.93
496 517 5.975344 GCACTATGTTATGTACTGTAGCGAA 59.025 40.000 0.00 0.00 0.00 4.70
497 518 6.641314 GCACTATGTTATGTACTGTAGCGAAT 59.359 38.462 0.00 0.00 0.00 3.34
498 519 7.148950 GCACTATGTTATGTACTGTAGCGAATC 60.149 40.741 0.00 0.00 0.00 2.52
499 520 8.076781 CACTATGTTATGTACTGTAGCGAATCT 58.923 37.037 0.00 0.00 0.00 2.40
500 521 9.281371 ACTATGTTATGTACTGTAGCGAATCTA 57.719 33.333 0.00 0.00 0.00 1.98
501 522 9.544314 CTATGTTATGTACTGTAGCGAATCTAC 57.456 37.037 0.00 0.00 46.17 2.59
502 523 7.563888 TGTTATGTACTGTAGCGAATCTACT 57.436 36.000 0.00 0.00 46.15 2.57
503 524 7.415229 TGTTATGTACTGTAGCGAATCTACTG 58.585 38.462 0.00 7.22 46.15 2.74
512 533 8.716619 CTGTAGCGAATCTACTGTAGTAAATC 57.283 38.462 14.11 7.88 46.15 2.17
513 534 8.447924 TGTAGCGAATCTACTGTAGTAAATCT 57.552 34.615 14.11 9.74 46.15 2.40
514 535 8.343366 TGTAGCGAATCTACTGTAGTAAATCTG 58.657 37.037 14.11 6.91 46.15 2.90
515 536 7.336161 AGCGAATCTACTGTAGTAAATCTGT 57.664 36.000 14.11 0.00 0.00 3.41
516 537 8.447924 AGCGAATCTACTGTAGTAAATCTGTA 57.552 34.615 14.11 0.00 0.00 2.74
517 538 8.344098 AGCGAATCTACTGTAGTAAATCTGTAC 58.656 37.037 14.11 0.00 0.00 2.90
518 539 8.344098 GCGAATCTACTGTAGTAAATCTGTACT 58.656 37.037 14.11 0.00 37.98 2.73
519 540 9.653067 CGAATCTACTGTAGTAAATCTGTACTG 57.347 37.037 14.11 0.00 35.85 2.74
523 544 9.107177 TCTACTGTAGTAAATCTGTACTGTAGC 57.893 37.037 14.11 0.00 40.15 3.58
524 545 6.783162 ACTGTAGTAAATCTGTACTGTAGCG 58.217 40.000 0.00 0.00 35.85 4.26
525 546 6.127810 TGTAGTAAATCTGTACTGTAGCGG 57.872 41.667 0.00 0.00 35.85 5.52
526 547 4.650754 AGTAAATCTGTACTGTAGCGGG 57.349 45.455 0.00 0.00 32.97 6.13
527 548 2.311124 AAATCTGTACTGTAGCGGGC 57.689 50.000 0.00 0.00 0.00 6.13
528 549 1.191535 AATCTGTACTGTAGCGGGCA 58.808 50.000 0.00 0.00 0.00 5.36
529 550 0.460311 ATCTGTACTGTAGCGGGCAC 59.540 55.000 0.00 0.00 0.00 5.01
542 563 4.074647 GGCACCCTGTAACACCAC 57.925 61.111 0.00 0.00 0.00 4.16
543 564 1.149627 GGCACCCTGTAACACCACA 59.850 57.895 0.00 0.00 0.00 4.17
544 565 1.170290 GGCACCCTGTAACACCACAC 61.170 60.000 0.00 0.00 0.00 3.82
545 566 0.179029 GCACCCTGTAACACCACACT 60.179 55.000 0.00 0.00 0.00 3.55
546 567 1.593196 CACCCTGTAACACCACACTG 58.407 55.000 0.00 0.00 0.00 3.66
547 568 1.134220 CACCCTGTAACACCACACTGT 60.134 52.381 0.00 0.00 0.00 3.55
548 569 1.562475 ACCCTGTAACACCACACTGTT 59.438 47.619 0.00 0.00 38.03 3.16
549 570 2.218603 CCCTGTAACACCACACTGTTC 58.781 52.381 0.00 0.00 35.87 3.18
550 571 2.420827 CCCTGTAACACCACACTGTTCA 60.421 50.000 0.00 0.00 35.87 3.18
551 572 3.476552 CCTGTAACACCACACTGTTCAT 58.523 45.455 0.00 0.00 35.87 2.57
552 573 3.250762 CCTGTAACACCACACTGTTCATG 59.749 47.826 0.00 0.00 35.87 3.07
553 574 4.126437 CTGTAACACCACACTGTTCATGA 58.874 43.478 0.00 0.00 35.87 3.07
554 575 4.126437 TGTAACACCACACTGTTCATGAG 58.874 43.478 0.00 0.00 35.87 2.90
555 576 3.281727 AACACCACACTGTTCATGAGT 57.718 42.857 0.00 0.00 27.41 3.41
556 577 3.281727 ACACCACACTGTTCATGAGTT 57.718 42.857 0.00 0.00 0.00 3.01
557 578 3.206150 ACACCACACTGTTCATGAGTTC 58.794 45.455 0.00 0.00 0.00 3.01
558 579 3.205338 CACCACACTGTTCATGAGTTCA 58.795 45.455 0.00 0.00 0.00 3.18
559 580 3.817084 CACCACACTGTTCATGAGTTCAT 59.183 43.478 0.00 0.00 36.96 2.57
568 589 0.042708 CATGAGTTCATGTAGCGCGC 60.043 55.000 26.66 26.66 46.40 6.86
569 590 0.460109 ATGAGTTCATGTAGCGCGCA 60.460 50.000 35.10 16.82 34.83 6.09
570 591 1.078201 TGAGTTCATGTAGCGCGCAG 61.078 55.000 35.10 16.90 0.00 5.18
571 592 1.078759 GAGTTCATGTAGCGCGCAGT 61.079 55.000 35.10 16.87 0.00 4.40
572 593 1.059369 GTTCATGTAGCGCGCAGTG 59.941 57.895 35.10 23.78 43.41 3.66
573 594 1.080161 TTCATGTAGCGCGCAGTGA 60.080 52.632 35.10 25.58 43.07 3.41
574 595 0.669012 TTCATGTAGCGCGCAGTGAA 60.669 50.000 35.10 29.16 43.07 3.18
575 596 0.669012 TCATGTAGCGCGCAGTGAAA 60.669 50.000 35.10 10.91 43.07 2.69
576 597 0.165727 CATGTAGCGCGCAGTGAAAA 59.834 50.000 35.10 11.46 43.07 2.29
577 598 0.871722 ATGTAGCGCGCAGTGAAAAA 59.128 45.000 35.10 9.74 43.07 1.94
578 599 0.871722 TGTAGCGCGCAGTGAAAAAT 59.128 45.000 35.10 11.76 43.07 1.82
579 600 1.136085 TGTAGCGCGCAGTGAAAAATC 60.136 47.619 35.10 10.39 43.07 2.17
580 601 1.136085 GTAGCGCGCAGTGAAAAATCA 60.136 47.619 35.10 0.00 43.07 2.57
581 602 0.523072 AGCGCGCAGTGAAAAATCAT 59.477 45.000 35.10 3.94 43.07 2.45
582 603 1.737236 AGCGCGCAGTGAAAAATCATA 59.263 42.857 35.10 0.00 43.07 2.15
583 604 2.104144 GCGCGCAGTGAAAAATCATAG 58.896 47.619 29.10 0.00 43.07 2.23
584 605 2.223021 GCGCGCAGTGAAAAATCATAGA 60.223 45.455 29.10 0.00 43.07 1.98
585 606 3.601356 CGCGCAGTGAAAAATCATAGAG 58.399 45.455 8.75 0.00 43.07 2.43
586 607 3.544834 CGCGCAGTGAAAAATCATAGAGG 60.545 47.826 8.75 0.00 43.07 3.69
587 608 3.790123 GCGCAGTGAAAAATCATAGAGGC 60.790 47.826 0.30 0.00 0.00 4.70
588 609 3.374988 CGCAGTGAAAAATCATAGAGGCA 59.625 43.478 0.00 0.00 0.00 4.75
589 610 4.666237 GCAGTGAAAAATCATAGAGGCAC 58.334 43.478 0.00 0.00 0.00 5.01
591 612 5.877031 CAGTGAAAAATCATAGAGGCACTG 58.123 41.667 0.00 0.00 41.55 3.66
592 613 4.397417 AGTGAAAAATCATAGAGGCACTGC 59.603 41.667 0.00 0.00 41.55 4.40
593 614 4.156556 GTGAAAAATCATAGAGGCACTGCA 59.843 41.667 2.82 0.00 41.55 4.41
594 615 4.397103 TGAAAAATCATAGAGGCACTGCAG 59.603 41.667 13.48 13.48 41.55 4.41
595 616 2.634815 AATCATAGAGGCACTGCAGG 57.365 50.000 19.93 8.27 41.55 4.85
596 617 0.108207 ATCATAGAGGCACTGCAGGC 59.892 55.000 19.93 17.77 41.55 4.85
598 619 0.755079 CATAGAGGCACTGCAGGCTA 59.245 55.000 19.93 11.15 45.32 3.93
599 620 0.755686 ATAGAGGCACTGCAGGCTAC 59.244 55.000 19.93 14.86 45.32 3.58
600 621 0.324738 TAGAGGCACTGCAGGCTACT 60.325 55.000 19.93 19.88 45.32 2.57
601 622 1.449246 GAGGCACTGCAGGCTACTG 60.449 63.158 19.93 7.83 45.32 2.74
602 623 2.177594 GAGGCACTGCAGGCTACTGT 62.178 60.000 19.93 0.00 45.32 3.55
603 624 0.904865 AGGCACTGCAGGCTACTGTA 60.905 55.000 19.93 0.00 46.62 2.74
615 636 1.606903 CTACTGTAGCTCCCCTACCG 58.393 60.000 1.26 0.00 44.77 4.02
616 637 0.921896 TACTGTAGCTCCCCTACCGT 59.078 55.000 0.00 3.68 44.77 4.83
617 638 0.683504 ACTGTAGCTCCCCTACCGTG 60.684 60.000 0.00 0.00 44.77 4.94
618 639 2.017559 CTGTAGCTCCCCTACCGTGC 62.018 65.000 0.00 0.00 44.77 5.34
619 640 2.443390 TAGCTCCCCTACCGTGCC 60.443 66.667 0.00 0.00 0.00 5.01
620 641 3.005148 TAGCTCCCCTACCGTGCCT 62.005 63.158 0.00 0.00 0.00 4.75
621 642 2.525284 TAGCTCCCCTACCGTGCCTT 62.525 60.000 0.00 0.00 0.00 4.35
622 643 2.901042 CTCCCCTACCGTGCCTTC 59.099 66.667 0.00 0.00 0.00 3.46
623 644 1.987855 CTCCCCTACCGTGCCTTCA 60.988 63.158 0.00 0.00 0.00 3.02
624 645 1.961180 CTCCCCTACCGTGCCTTCAG 61.961 65.000 0.00 0.00 0.00 3.02
625 646 2.125106 CCCTACCGTGCCTTCAGC 60.125 66.667 0.00 0.00 44.14 4.26
634 655 4.187056 GCCTTCAGCACGGTAGAC 57.813 61.111 0.00 0.00 42.97 2.59
645 666 2.493501 GGTAGACGAGCCGGTTCC 59.506 66.667 13.19 0.00 0.00 3.62
646 667 2.493501 GTAGACGAGCCGGTTCCC 59.506 66.667 13.19 5.01 0.00 3.97
656 677 1.827399 GCCGGTTCCCAGAGAGTTCA 61.827 60.000 1.90 0.00 0.00 3.18
776 797 2.029073 CCGCACAAGACCACGAGT 59.971 61.111 0.00 0.00 0.00 4.18
794 815 2.588034 GCGGGCCGTTGGATCTAC 60.588 66.667 28.82 2.84 0.00 2.59
796 817 2.108362 GGGCCGTTGGATCTACCG 59.892 66.667 0.00 0.00 42.61 4.02
797 818 2.108362 GGCCGTTGGATCTACCGG 59.892 66.667 10.83 10.83 42.61 5.28
798 819 2.108362 GCCGTTGGATCTACCGGG 59.892 66.667 16.57 1.35 42.61 5.73
799 820 2.428925 GCCGTTGGATCTACCGGGA 61.429 63.158 16.57 0.00 42.61 5.14
800 821 1.440476 CCGTTGGATCTACCGGGAC 59.560 63.158 7.19 0.00 42.61 4.46
801 822 1.440476 CGTTGGATCTACCGGGACC 59.560 63.158 6.32 0.00 42.61 4.46
802 823 1.828081 GTTGGATCTACCGGGACCC 59.172 63.158 6.32 0.00 42.61 4.46
803 824 1.383525 TTGGATCTACCGGGACCCC 60.384 63.158 6.32 0.00 42.61 4.95
804 825 2.526126 GGATCTACCGGGACCCCC 60.526 72.222 6.32 0.00 41.09 5.40
881 902 1.296715 CACCAGTGGGCAGTACTCC 59.703 63.158 15.21 0.00 37.90 3.85
922 947 0.027586 CCCACGCGCTTATAACTTGC 59.972 55.000 5.73 0.00 0.00 4.01
923 948 1.006832 CCACGCGCTTATAACTTGCT 58.993 50.000 5.73 0.00 0.00 3.91
924 949 1.396996 CCACGCGCTTATAACTTGCTT 59.603 47.619 5.73 0.00 0.00 3.91
925 950 2.430956 CACGCGCTTATAACTTGCTTG 58.569 47.619 5.73 0.00 0.00 4.01
942 967 0.248990 TTGCTTGCTTGCCTCGTTTG 60.249 50.000 0.00 0.00 0.00 2.93
1008 1038 4.471908 ACATCAGCGATGCGGCCA 62.472 61.111 15.41 0.00 43.15 5.36
1629 1659 3.966543 CCCAACCCGTTCCTGCCT 61.967 66.667 0.00 0.00 0.00 4.75
1915 1945 1.174078 CCTGCAGCAACACATGGACA 61.174 55.000 8.66 0.00 0.00 4.02
1947 1977 3.556306 GCCAGGGGCGCCTATGTA 61.556 66.667 28.56 0.00 39.62 2.29
1962 1992 4.630069 GCCTATGTACTCAACAATGACGTT 59.370 41.667 0.00 0.00 42.70 3.99
2043 2073 2.294078 AAGGCTAGGGCTTGAGCGT 61.294 57.895 5.57 0.00 46.51 5.07
2211 2241 2.028658 TCACCTCAATGCTCAGTCTGAC 60.029 50.000 0.00 0.00 0.00 3.51
2217 2271 1.293062 ATGCTCAGTCTGACCCCAAT 58.707 50.000 3.76 0.00 0.00 3.16
2232 2286 1.651240 CCAATGCCGAGTTGCCTCTG 61.651 60.000 0.00 0.00 35.43 3.35
2410 2464 8.080417 GCATTCATTGTCTATTGCTTGACATAT 58.920 33.333 0.00 0.00 41.93 1.78
2498 2552 3.232213 ACAGTCTTACACGTAGCCATG 57.768 47.619 0.00 0.00 0.00 3.66
2564 2618 4.517285 TGATTCTAAATCCACTGTGCTCC 58.483 43.478 1.29 0.00 0.00 4.70
2575 2629 3.583806 CACTGTGCTCCTTCTAGTCTTG 58.416 50.000 0.00 0.00 0.00 3.02
2604 2658 4.335315 TGTAAAGTTGAACTCCTGCTGTTG 59.665 41.667 0.00 0.00 0.00 3.33
2624 2678 7.465353 TGTTGGAGAATCATGATGCTTAAAA 57.535 32.000 17.69 8.67 36.25 1.52
2654 2708 4.645136 ACTTCTGGAAAACTTTGGGAAGTC 59.355 41.667 0.00 0.00 45.18 3.01
2665 2719 3.534357 TTGGGAAGTCCTATTTTGGCA 57.466 42.857 0.00 0.00 36.20 4.92
2671 2725 5.163550 GGGAAGTCCTATTTTGGCACATAAC 60.164 44.000 0.00 0.00 35.05 1.89
2687 2741 6.426328 GGCACATAACTGATATCTTTCTCTGG 59.574 42.308 3.98 0.00 0.00 3.86
2758 2812 9.502091 ACAGTTAAAGATACACAAGAAGCAATA 57.498 29.630 0.00 0.00 0.00 1.90
2802 2856 6.015519 ACAGCTGCCACAAAATACTTTAATCA 60.016 34.615 15.27 0.00 0.00 2.57
2803 2857 7.037438 CAGCTGCCACAAAATACTTTAATCAT 58.963 34.615 0.00 0.00 0.00 2.45
2804 2858 7.546667 CAGCTGCCACAAAATACTTTAATCATT 59.453 33.333 0.00 0.00 0.00 2.57
2805 2859 8.096414 AGCTGCCACAAAATACTTTAATCATTT 58.904 29.630 0.00 0.00 0.00 2.32
2806 2860 8.382875 GCTGCCACAAAATACTTTAATCATTTC 58.617 33.333 0.00 0.00 0.00 2.17
2807 2861 9.421806 CTGCCACAAAATACTTTAATCATTTCA 57.578 29.630 0.00 0.00 0.00 2.69
2808 2862 9.421806 TGCCACAAAATACTTTAATCATTTCAG 57.578 29.630 0.00 0.00 0.00 3.02
2809 2863 9.423061 GCCACAAAATACTTTAATCATTTCAGT 57.577 29.630 0.00 0.00 0.00 3.41
2823 2877 5.946298 TCATTTCAGTGATGTTCAATCTGC 58.054 37.500 0.00 0.00 0.00 4.26
2857 2911 8.070769 TGAAACGTGAAATTCAACATCGATAAA 58.929 29.630 10.04 0.00 32.89 1.40
2858 2912 8.964420 AAACGTGAAATTCAACATCGATAAAT 57.036 26.923 10.04 0.00 0.00 1.40
2859 2913 8.964420 AACGTGAAATTCAACATCGATAAATT 57.036 26.923 10.04 0.00 0.00 1.82
2889 2943 6.413783 TTTTTGAAAAGGAGAATGTACCCC 57.586 37.500 0.00 0.00 0.00 4.95
2890 2944 3.732048 TGAAAAGGAGAATGTACCCCC 57.268 47.619 0.00 0.00 0.00 5.40
2891 2945 2.026636 TGAAAAGGAGAATGTACCCCCG 60.027 50.000 0.00 0.00 0.00 5.73
2892 2946 0.916809 AAAGGAGAATGTACCCCCGG 59.083 55.000 0.00 0.00 0.00 5.73
2893 2947 1.632965 AAGGAGAATGTACCCCCGGC 61.633 60.000 0.00 0.00 0.00 6.13
2894 2948 2.509422 GAGAATGTACCCCCGGCC 59.491 66.667 0.00 0.00 0.00 6.13
2895 2949 2.042261 AGAATGTACCCCCGGCCT 59.958 61.111 0.00 0.00 0.00 5.19
2896 2950 2.041206 GAGAATGTACCCCCGGCCTC 62.041 65.000 0.00 0.00 0.00 4.70
2897 2951 2.042261 AATGTACCCCCGGCCTCT 59.958 61.111 0.00 0.00 0.00 3.69
2898 2952 2.325393 GAATGTACCCCCGGCCTCTG 62.325 65.000 0.00 0.00 0.00 3.35
2901 2955 4.815973 TACCCCCGGCCTCTGCAT 62.816 66.667 0.00 0.00 40.13 3.96
2904 2958 4.559063 CCCCGGCCTCTGCATCTG 62.559 72.222 0.00 0.00 40.13 2.90
2905 2959 4.559063 CCCGGCCTCTGCATCTGG 62.559 72.222 0.00 0.00 40.13 3.86
2906 2960 4.559063 CCGGCCTCTGCATCTGGG 62.559 72.222 0.00 0.00 40.13 4.45
2908 2962 4.119363 GGCCTCTGCATCTGGGCA 62.119 66.667 17.30 0.00 45.68 5.36
2909 2963 2.195139 GCCTCTGCATCTGGGCAT 59.805 61.111 12.40 0.00 43.97 4.40
2910 2964 1.455217 GCCTCTGCATCTGGGCATT 60.455 57.895 12.40 0.00 43.97 3.56
2911 2965 1.735376 GCCTCTGCATCTGGGCATTG 61.735 60.000 12.40 0.00 43.97 2.82
2912 2966 1.734137 CTCTGCATCTGGGCATTGC 59.266 57.895 0.00 0.00 43.97 3.56
2913 2967 1.000646 TCTGCATCTGGGCATTGCA 60.001 52.632 11.39 0.00 43.97 4.08
2914 2968 0.396556 TCTGCATCTGGGCATTGCAT 60.397 50.000 11.39 0.00 44.65 3.96
2915 2969 0.249447 CTGCATCTGGGCATTGCATG 60.249 55.000 11.39 6.65 44.65 4.06
2953 3007 5.975693 TTATTCACAAAGCCCTTACAAGG 57.024 39.130 0.66 0.66 46.06 3.61
2954 3008 3.306472 TTCACAAAGCCCTTACAAGGT 57.694 42.857 7.23 0.00 44.98 3.50
2955 3009 4.440826 TTCACAAAGCCCTTACAAGGTA 57.559 40.909 7.23 0.00 44.98 3.08
2956 3010 3.746940 TCACAAAGCCCTTACAAGGTAC 58.253 45.455 7.23 0.00 44.98 3.34
2957 3011 3.136809 TCACAAAGCCCTTACAAGGTACA 59.863 43.478 7.23 0.00 44.98 2.90
2958 3012 4.079253 CACAAAGCCCTTACAAGGTACAT 58.921 43.478 7.23 0.00 44.98 2.29
2959 3013 4.156008 CACAAAGCCCTTACAAGGTACATC 59.844 45.833 7.23 0.00 44.98 3.06
2960 3014 2.981859 AGCCCTTACAAGGTACATCG 57.018 50.000 7.23 0.00 44.98 3.84
2961 3015 1.485066 AGCCCTTACAAGGTACATCGG 59.515 52.381 7.23 0.00 44.98 4.18
2962 3016 1.208776 GCCCTTACAAGGTACATCGGT 59.791 52.381 7.23 0.00 44.98 4.69
2963 3017 2.431782 GCCCTTACAAGGTACATCGGTA 59.568 50.000 7.23 0.00 44.98 4.02
2964 3018 3.118665 GCCCTTACAAGGTACATCGGTAA 60.119 47.826 7.23 0.14 44.98 2.85
2965 3019 4.690122 CCCTTACAAGGTACATCGGTAAG 58.310 47.826 18.02 18.02 44.98 2.34
2966 3020 4.161001 CCCTTACAAGGTACATCGGTAAGT 59.839 45.833 20.89 2.78 44.98 2.24
2967 3021 5.346522 CCTTACAAGGTACATCGGTAAGTC 58.653 45.833 20.89 0.00 41.41 3.01
2968 3022 5.126707 CCTTACAAGGTACATCGGTAAGTCT 59.873 44.000 20.89 0.00 41.41 3.24
2969 3023 4.451629 ACAAGGTACATCGGTAAGTCTG 57.548 45.455 0.00 0.00 0.00 3.51
2970 3024 4.084287 ACAAGGTACATCGGTAAGTCTGA 58.916 43.478 0.00 0.00 35.75 3.27
2971 3025 4.525487 ACAAGGTACATCGGTAAGTCTGAA 59.475 41.667 0.00 0.00 34.86 3.02
2972 3026 4.985538 AGGTACATCGGTAAGTCTGAAG 57.014 45.455 0.00 0.00 34.86 3.02
2973 3027 3.130693 AGGTACATCGGTAAGTCTGAAGC 59.869 47.826 0.00 0.00 34.86 3.86
2974 3028 2.674796 ACATCGGTAAGTCTGAAGCC 57.325 50.000 0.00 0.00 34.86 4.35
2975 3029 1.899814 ACATCGGTAAGTCTGAAGCCA 59.100 47.619 0.00 0.00 34.86 4.75
2976 3030 2.271800 CATCGGTAAGTCTGAAGCCAC 58.728 52.381 0.00 0.00 34.86 5.01
2977 3031 0.606604 TCGGTAAGTCTGAAGCCACC 59.393 55.000 0.00 0.00 0.00 4.61
2978 3032 0.320374 CGGTAAGTCTGAAGCCACCA 59.680 55.000 0.00 0.00 0.00 4.17
2979 3033 1.066143 CGGTAAGTCTGAAGCCACCAT 60.066 52.381 0.00 0.00 0.00 3.55
2980 3034 2.615493 CGGTAAGTCTGAAGCCACCATT 60.615 50.000 0.00 0.00 0.00 3.16
2981 3035 2.749621 GGTAAGTCTGAAGCCACCATTG 59.250 50.000 0.00 0.00 0.00 2.82
2998 3052 2.612200 TGGCAACACTTGTCGCTAC 58.388 52.632 0.00 0.00 46.17 3.58
2999 3053 0.105964 TGGCAACACTTGTCGCTACT 59.894 50.000 0.00 0.00 46.17 2.57
3000 3054 0.790814 GGCAACACTTGTCGCTACTC 59.209 55.000 0.00 0.00 0.00 2.59
3001 3055 0.790814 GCAACACTTGTCGCTACTCC 59.209 55.000 0.00 0.00 0.00 3.85
3002 3056 1.605712 GCAACACTTGTCGCTACTCCT 60.606 52.381 0.00 0.00 0.00 3.69
3003 3057 2.352421 GCAACACTTGTCGCTACTCCTA 60.352 50.000 0.00 0.00 0.00 2.94
3004 3058 3.676324 GCAACACTTGTCGCTACTCCTAT 60.676 47.826 0.00 0.00 0.00 2.57
3005 3059 4.106197 CAACACTTGTCGCTACTCCTATC 58.894 47.826 0.00 0.00 0.00 2.08
3006 3060 2.688958 ACACTTGTCGCTACTCCTATCC 59.311 50.000 0.00 0.00 0.00 2.59
3007 3061 2.034812 CACTTGTCGCTACTCCTATCCC 59.965 54.545 0.00 0.00 0.00 3.85
3008 3062 1.614413 CTTGTCGCTACTCCTATCCCC 59.386 57.143 0.00 0.00 0.00 4.81
3009 3063 0.536687 TGTCGCTACTCCTATCCCCG 60.537 60.000 0.00 0.00 0.00 5.73
3010 3064 0.250640 GTCGCTACTCCTATCCCCGA 60.251 60.000 0.00 0.00 0.00 5.14
3011 3065 0.697079 TCGCTACTCCTATCCCCGAT 59.303 55.000 0.00 0.00 0.00 4.18
3012 3066 0.811915 CGCTACTCCTATCCCCGATG 59.188 60.000 0.00 0.00 0.00 3.84
3013 3067 0.533032 GCTACTCCTATCCCCGATGC 59.467 60.000 0.00 0.00 0.00 3.91
3014 3068 1.187087 CTACTCCTATCCCCGATGCC 58.813 60.000 0.00 0.00 0.00 4.40
3015 3069 0.252103 TACTCCTATCCCCGATGCCC 60.252 60.000 0.00 0.00 0.00 5.36
3016 3070 1.229336 CTCCTATCCCCGATGCCCT 60.229 63.158 0.00 0.00 0.00 5.19
3017 3071 1.229209 TCCTATCCCCGATGCCCTC 60.229 63.158 0.00 0.00 0.00 4.30
3018 3072 2.294078 CCTATCCCCGATGCCCTCC 61.294 68.421 0.00 0.00 0.00 4.30
3019 3073 2.603473 TATCCCCGATGCCCTCCG 60.603 66.667 0.00 0.00 0.00 4.63
3040 3094 4.468689 CCCGTTCGCCTCCCCTTC 62.469 72.222 0.00 0.00 0.00 3.46
3041 3095 4.468689 CCGTTCGCCTCCCCTTCC 62.469 72.222 0.00 0.00 0.00 3.46
3042 3096 4.468689 CGTTCGCCTCCCCTTCCC 62.469 72.222 0.00 0.00 0.00 3.97
3043 3097 3.009714 GTTCGCCTCCCCTTCCCT 61.010 66.667 0.00 0.00 0.00 4.20
3044 3098 2.687566 TTCGCCTCCCCTTCCCTC 60.688 66.667 0.00 0.00 0.00 4.30
3045 3099 3.254035 TTCGCCTCCCCTTCCCTCT 62.254 63.158 0.00 0.00 0.00 3.69
3046 3100 1.882189 TTCGCCTCCCCTTCCCTCTA 61.882 60.000 0.00 0.00 0.00 2.43
3047 3101 1.834822 CGCCTCCCCTTCCCTCTAG 60.835 68.421 0.00 0.00 0.00 2.43
3048 3102 1.627019 GCCTCCCCTTCCCTCTAGA 59.373 63.158 0.00 0.00 0.00 2.43
3049 3103 0.192315 GCCTCCCCTTCCCTCTAGAT 59.808 60.000 0.00 0.00 0.00 1.98
3050 3104 1.829666 GCCTCCCCTTCCCTCTAGATC 60.830 61.905 0.00 0.00 0.00 2.75
3051 3105 1.203250 CCTCCCCTTCCCTCTAGATCC 60.203 61.905 0.00 0.00 0.00 3.36
3052 3106 0.868186 TCCCCTTCCCTCTAGATCCC 59.132 60.000 0.00 0.00 0.00 3.85
3053 3107 0.543174 CCCCTTCCCTCTAGATCCCG 60.543 65.000 0.00 0.00 0.00 5.14
3054 3108 0.188834 CCCTTCCCTCTAGATCCCGT 59.811 60.000 0.00 0.00 0.00 5.28
3055 3109 1.623163 CCTTCCCTCTAGATCCCGTC 58.377 60.000 0.00 0.00 0.00 4.79
3056 3110 1.623163 CTTCCCTCTAGATCCCGTCC 58.377 60.000 0.00 0.00 0.00 4.79
3057 3111 0.178998 TTCCCTCTAGATCCCGTCCG 60.179 60.000 0.00 0.00 0.00 4.79
3058 3112 1.150992 CCCTCTAGATCCCGTCCGT 59.849 63.158 0.00 0.00 0.00 4.69
3059 3113 0.890090 CCCTCTAGATCCCGTCCGTC 60.890 65.000 0.00 0.00 0.00 4.79
3060 3114 0.179026 CCTCTAGATCCCGTCCGTCA 60.179 60.000 0.00 0.00 0.00 4.35
3061 3115 0.945813 CTCTAGATCCCGTCCGTCAC 59.054 60.000 0.00 0.00 0.00 3.67
3062 3116 0.545171 TCTAGATCCCGTCCGTCACT 59.455 55.000 0.00 0.00 0.00 3.41
3063 3117 0.945813 CTAGATCCCGTCCGTCACTC 59.054 60.000 0.00 0.00 0.00 3.51
3064 3118 0.465097 TAGATCCCGTCCGTCACTCC 60.465 60.000 0.00 0.00 0.00 3.85
3065 3119 1.753463 GATCCCGTCCGTCACTCCT 60.753 63.158 0.00 0.00 0.00 3.69
3066 3120 0.465097 GATCCCGTCCGTCACTCCTA 60.465 60.000 0.00 0.00 0.00 2.94
3067 3121 0.185416 ATCCCGTCCGTCACTCCTAT 59.815 55.000 0.00 0.00 0.00 2.57
3068 3122 0.465097 TCCCGTCCGTCACTCCTATC 60.465 60.000 0.00 0.00 0.00 2.08
3069 3123 1.453762 CCCGTCCGTCACTCCTATCC 61.454 65.000 0.00 0.00 0.00 2.59
3070 3124 1.453762 CCGTCCGTCACTCCTATCCC 61.454 65.000 0.00 0.00 0.00 3.85
3071 3125 0.465824 CGTCCGTCACTCCTATCCCT 60.466 60.000 0.00 0.00 0.00 4.20
3072 3126 1.320507 GTCCGTCACTCCTATCCCTC 58.679 60.000 0.00 0.00 0.00 4.30
3073 3127 0.185416 TCCGTCACTCCTATCCCTCC 59.815 60.000 0.00 0.00 0.00 4.30
3074 3128 0.828343 CCGTCACTCCTATCCCTCCC 60.828 65.000 0.00 0.00 0.00 4.30
3075 3129 0.828343 CGTCACTCCTATCCCTCCCC 60.828 65.000 0.00 0.00 0.00 4.81
3076 3130 0.563672 GTCACTCCTATCCCTCCCCT 59.436 60.000 0.00 0.00 0.00 4.79
3077 3131 0.861155 TCACTCCTATCCCTCCCCTC 59.139 60.000 0.00 0.00 0.00 4.30
3078 3132 0.178918 CACTCCTATCCCTCCCCTCC 60.179 65.000 0.00 0.00 0.00 4.30
3079 3133 0.633835 ACTCCTATCCCTCCCCTCCA 60.634 60.000 0.00 0.00 0.00 3.86
3080 3134 0.178918 CTCCTATCCCTCCCCTCCAC 60.179 65.000 0.00 0.00 0.00 4.02
3081 3135 0.934302 TCCTATCCCTCCCCTCCACA 60.934 60.000 0.00 0.00 0.00 4.17
3082 3136 0.194587 CCTATCCCTCCCCTCCACAT 59.805 60.000 0.00 0.00 0.00 3.21
3083 3137 1.650528 CTATCCCTCCCCTCCACATC 58.349 60.000 0.00 0.00 0.00 3.06
3084 3138 0.193574 TATCCCTCCCCTCCACATCC 59.806 60.000 0.00 0.00 0.00 3.51
3085 3139 2.644628 ATCCCTCCCCTCCACATCCC 62.645 65.000 0.00 0.00 0.00 3.85
3086 3140 2.374342 CCTCCCCTCCACATCCCT 59.626 66.667 0.00 0.00 0.00 4.20
3087 3141 1.768077 CCTCCCCTCCACATCCCTC 60.768 68.421 0.00 0.00 0.00 4.30
3088 3142 1.003442 CTCCCCTCCACATCCCTCA 59.997 63.158 0.00 0.00 0.00 3.86
3089 3143 0.621571 CTCCCCTCCACATCCCTCAA 60.622 60.000 0.00 0.00 0.00 3.02
3090 3144 0.621571 TCCCCTCCACATCCCTCAAG 60.622 60.000 0.00 0.00 0.00 3.02
3091 3145 1.639635 CCCCTCCACATCCCTCAAGG 61.640 65.000 0.00 0.00 0.00 3.61
3092 3146 0.916358 CCCTCCACATCCCTCAAGGT 60.916 60.000 0.00 0.00 36.75 3.50
3093 3147 1.625228 CCCTCCACATCCCTCAAGGTA 60.625 57.143 0.00 0.00 36.75 3.08
3094 3148 2.196595 CCTCCACATCCCTCAAGGTAA 58.803 52.381 0.00 0.00 36.75 2.85
3095 3149 2.780010 CCTCCACATCCCTCAAGGTAAT 59.220 50.000 0.00 0.00 36.75 1.89
3096 3150 3.973973 CCTCCACATCCCTCAAGGTAATA 59.026 47.826 0.00 0.00 36.75 0.98
3097 3151 4.412199 CCTCCACATCCCTCAAGGTAATAA 59.588 45.833 0.00 0.00 36.75 1.40
3098 3152 5.104109 CCTCCACATCCCTCAAGGTAATAAA 60.104 44.000 0.00 0.00 36.75 1.40
3099 3153 6.395780 TCCACATCCCTCAAGGTAATAAAA 57.604 37.500 0.00 0.00 36.75 1.52
3100 3154 6.795590 TCCACATCCCTCAAGGTAATAAAAA 58.204 36.000 0.00 0.00 36.75 1.94
3123 3177 9.778993 AAAAATGATCTACATGAATTGTCTTCG 57.221 29.630 0.00 0.00 39.87 3.79
3124 3178 8.498054 AAATGATCTACATGAATTGTCTTCGT 57.502 30.769 0.00 0.00 39.87 3.85
3125 3179 7.706281 ATGATCTACATGAATTGTCTTCGTC 57.294 36.000 0.00 0.00 39.87 4.20
3126 3180 6.867550 TGATCTACATGAATTGTCTTCGTCT 58.132 36.000 0.00 0.00 39.87 4.18
3127 3181 6.975197 TGATCTACATGAATTGTCTTCGTCTC 59.025 38.462 0.00 0.00 39.87 3.36
3128 3182 5.332707 TCTACATGAATTGTCTTCGTCTCG 58.667 41.667 0.00 0.00 39.87 4.04
3129 3183 3.914312 ACATGAATTGTCTTCGTCTCGT 58.086 40.909 0.00 0.00 30.89 4.18
3130 3184 3.921021 ACATGAATTGTCTTCGTCTCGTC 59.079 43.478 0.00 0.00 30.89 4.20
3131 3185 2.581637 TGAATTGTCTTCGTCTCGTCG 58.418 47.619 0.00 0.00 0.00 5.12
3132 3186 2.224784 TGAATTGTCTTCGTCTCGTCGA 59.775 45.455 0.00 0.00 38.08 4.20
3133 3187 2.983402 ATTGTCTTCGTCTCGTCGAA 57.017 45.000 0.00 10.79 45.46 3.71
3134 3188 2.983402 TTGTCTTCGTCTCGTCGAAT 57.017 45.000 11.42 0.00 46.22 3.34
3135 3189 2.522372 TGTCTTCGTCTCGTCGAATC 57.478 50.000 11.42 9.27 46.22 2.52
3136 3190 1.201888 TGTCTTCGTCTCGTCGAATCG 60.202 52.381 10.97 10.97 46.22 3.34
3137 3191 0.372679 TCTTCGTCTCGTCGAATCGG 59.627 55.000 15.24 4.60 46.22 4.18
3138 3192 0.096628 CTTCGTCTCGTCGAATCGGT 59.903 55.000 15.24 0.00 46.22 4.69
3139 3193 0.518636 TTCGTCTCGTCGAATCGGTT 59.481 50.000 15.24 0.00 43.36 4.44
3140 3194 0.179207 TCGTCTCGTCGAATCGGTTG 60.179 55.000 15.24 0.00 36.89 3.77
3141 3195 1.132199 CGTCTCGTCGAATCGGTTGG 61.132 60.000 1.76 0.00 0.00 3.77
3142 3196 0.109412 GTCTCGTCGAATCGGTTGGT 60.109 55.000 1.76 0.00 0.00 3.67
3143 3197 0.599558 TCTCGTCGAATCGGTTGGTT 59.400 50.000 1.76 0.00 0.00 3.67
3144 3198 1.000060 TCTCGTCGAATCGGTTGGTTT 60.000 47.619 1.76 0.00 0.00 3.27
3145 3199 1.796459 CTCGTCGAATCGGTTGGTTTT 59.204 47.619 1.76 0.00 0.00 2.43
3146 3200 1.527736 TCGTCGAATCGGTTGGTTTTG 59.472 47.619 1.76 0.00 0.00 2.44
3147 3201 1.527736 CGTCGAATCGGTTGGTTTTGA 59.472 47.619 1.76 0.00 0.00 2.69
3148 3202 2.158841 CGTCGAATCGGTTGGTTTTGAT 59.841 45.455 1.76 0.00 0.00 2.57
3149 3203 3.368539 CGTCGAATCGGTTGGTTTTGATA 59.631 43.478 1.76 0.00 0.00 2.15
3150 3204 4.033587 CGTCGAATCGGTTGGTTTTGATAT 59.966 41.667 1.76 0.00 0.00 1.63
3151 3205 5.232626 CGTCGAATCGGTTGGTTTTGATATA 59.767 40.000 1.76 0.00 0.00 0.86
3152 3206 6.237888 CGTCGAATCGGTTGGTTTTGATATAA 60.238 38.462 1.76 0.00 0.00 0.98
3153 3207 7.465989 GTCGAATCGGTTGGTTTTGATATAAA 58.534 34.615 1.76 0.00 0.00 1.40
3154 3208 7.964011 GTCGAATCGGTTGGTTTTGATATAAAA 59.036 33.333 1.76 0.00 0.00 1.52
3155 3209 8.512956 TCGAATCGGTTGGTTTTGATATAAAAA 58.487 29.630 1.76 0.00 0.00 1.94
3156 3210 9.296400 CGAATCGGTTGGTTTTGATATAAAAAT 57.704 29.630 1.19 0.00 32.02 1.82
3160 3214 9.796120 TCGGTTGGTTTTGATATAAAAATCATC 57.204 29.630 11.36 10.47 39.30 2.92
3161 3215 9.030301 CGGTTGGTTTTGATATAAAAATCATCC 57.970 33.333 20.37 20.37 41.98 3.51
3162 3216 9.325198 GGTTGGTTTTGATATAAAAATCATCCC 57.675 33.333 19.94 15.03 40.76 3.85
3163 3217 9.883142 GTTGGTTTTGATATAAAAATCATCCCA 57.117 29.630 11.36 6.33 39.30 4.37
3168 3222 9.979578 TTTTGATATAAAAATCATCCCAATCCG 57.020 29.630 0.00 0.00 35.84 4.18
3169 3223 8.932434 TTGATATAAAAATCATCCCAATCCGA 57.068 30.769 0.00 0.00 35.84 4.55
3170 3224 8.565896 TGATATAAAAATCATCCCAATCCGAG 57.434 34.615 0.00 0.00 30.92 4.63
3171 3225 8.163408 TGATATAAAAATCATCCCAATCCGAGT 58.837 33.333 0.00 0.00 30.92 4.18
3172 3226 8.940397 ATATAAAAATCATCCCAATCCGAGTT 57.060 30.769 0.00 0.00 0.00 3.01
3173 3227 5.582689 AAAAATCATCCCAATCCGAGTTC 57.417 39.130 0.00 0.00 0.00 3.01
3174 3228 2.938956 ATCATCCCAATCCGAGTTCC 57.061 50.000 0.00 0.00 0.00 3.62
3175 3229 1.879575 TCATCCCAATCCGAGTTCCT 58.120 50.000 0.00 0.00 0.00 3.36
3176 3230 3.040655 TCATCCCAATCCGAGTTCCTA 57.959 47.619 0.00 0.00 0.00 2.94
3177 3231 3.587498 TCATCCCAATCCGAGTTCCTAT 58.413 45.455 0.00 0.00 0.00 2.57
3178 3232 3.324846 TCATCCCAATCCGAGTTCCTATG 59.675 47.826 0.00 0.00 0.00 2.23
3179 3233 1.416401 TCCCAATCCGAGTTCCTATGC 59.584 52.381 0.00 0.00 0.00 3.14
3180 3234 1.140852 CCCAATCCGAGTTCCTATGCA 59.859 52.381 0.00 0.00 0.00 3.96
3181 3235 2.421388 CCCAATCCGAGTTCCTATGCAA 60.421 50.000 0.00 0.00 0.00 4.08
3182 3236 3.278574 CCAATCCGAGTTCCTATGCAAA 58.721 45.455 0.00 0.00 0.00 3.68
3183 3237 3.694072 CCAATCCGAGTTCCTATGCAAAA 59.306 43.478 0.00 0.00 0.00 2.44
3184 3238 4.201950 CCAATCCGAGTTCCTATGCAAAAG 60.202 45.833 0.00 0.00 0.00 2.27
3185 3239 3.695830 TCCGAGTTCCTATGCAAAAGT 57.304 42.857 0.00 0.00 0.00 2.66
3186 3240 4.015872 TCCGAGTTCCTATGCAAAAGTT 57.984 40.909 0.00 0.00 0.00 2.66
3187 3241 5.155278 TCCGAGTTCCTATGCAAAAGTTA 57.845 39.130 0.00 0.00 0.00 2.24
3188 3242 5.175859 TCCGAGTTCCTATGCAAAAGTTAG 58.824 41.667 0.00 0.00 0.00 2.34
3189 3243 5.046878 TCCGAGTTCCTATGCAAAAGTTAGA 60.047 40.000 0.00 0.00 0.00 2.10
3190 3244 5.292101 CCGAGTTCCTATGCAAAAGTTAGAG 59.708 44.000 0.00 0.00 0.00 2.43
3191 3245 5.292101 CGAGTTCCTATGCAAAAGTTAGAGG 59.708 44.000 0.00 0.00 0.00 3.69
3192 3246 4.944317 AGTTCCTATGCAAAAGTTAGAGGC 59.056 41.667 0.00 0.00 0.00 4.70
3193 3247 4.568072 TCCTATGCAAAAGTTAGAGGCA 57.432 40.909 0.00 0.00 39.03 4.75
3194 3248 4.917385 TCCTATGCAAAAGTTAGAGGCAA 58.083 39.130 0.00 0.00 38.08 4.52
3195 3249 4.700213 TCCTATGCAAAAGTTAGAGGCAAC 59.300 41.667 0.00 0.00 38.08 4.17
3196 3250 4.458989 CCTATGCAAAAGTTAGAGGCAACA 59.541 41.667 0.00 0.00 38.08 3.33
3197 3251 3.708563 TGCAAAAGTTAGAGGCAACAC 57.291 42.857 0.00 0.00 41.41 3.32
3198 3252 3.287222 TGCAAAAGTTAGAGGCAACACT 58.713 40.909 0.00 0.00 41.77 3.55
3199 3253 4.456535 TGCAAAAGTTAGAGGCAACACTA 58.543 39.130 0.00 0.00 38.87 2.74
3200 3254 5.070001 TGCAAAAGTTAGAGGCAACACTAT 58.930 37.500 0.00 0.00 39.59 2.12
3201 3255 5.048782 TGCAAAAGTTAGAGGCAACACTATG 60.049 40.000 0.00 0.00 39.59 2.23
3202 3256 5.393962 CAAAAGTTAGAGGCAACACTATGC 58.606 41.667 0.00 0.00 45.67 3.14
3209 3263 2.089854 GCAACACTATGCAGACCGG 58.910 57.895 0.00 0.00 45.70 5.28
3210 3264 0.673644 GCAACACTATGCAGACCGGT 60.674 55.000 6.92 6.92 45.70 5.28
3211 3265 1.359848 CAACACTATGCAGACCGGTC 58.640 55.000 27.67 27.67 0.00 4.79
3212 3266 0.249398 AACACTATGCAGACCGGTCC 59.751 55.000 30.82 17.09 0.00 4.46
3213 3267 0.614979 ACACTATGCAGACCGGTCCT 60.615 55.000 30.82 15.42 0.00 3.85
3214 3268 0.103208 CACTATGCAGACCGGTCCTC 59.897 60.000 30.82 21.93 0.00 3.71
3215 3269 0.324368 ACTATGCAGACCGGTCCTCA 60.324 55.000 30.82 26.54 0.00 3.86
3216 3270 0.387202 CTATGCAGACCGGTCCTCAG 59.613 60.000 30.82 18.68 0.00 3.35
3217 3271 0.324368 TATGCAGACCGGTCCTCAGT 60.324 55.000 30.82 18.19 0.00 3.41
3218 3272 1.892819 ATGCAGACCGGTCCTCAGTG 61.893 60.000 30.82 22.01 0.00 3.66
3219 3273 2.276116 GCAGACCGGTCCTCAGTGA 61.276 63.158 30.82 0.00 0.00 3.41
3220 3274 1.816863 GCAGACCGGTCCTCAGTGAA 61.817 60.000 30.82 0.00 0.00 3.18
3221 3275 0.679505 CAGACCGGTCCTCAGTGAAA 59.320 55.000 30.82 0.00 0.00 2.69
3222 3276 1.070134 CAGACCGGTCCTCAGTGAAAA 59.930 52.381 30.82 0.00 0.00 2.29
3223 3277 1.766496 AGACCGGTCCTCAGTGAAAAA 59.234 47.619 30.82 0.00 0.00 1.94
3224 3278 2.143925 GACCGGTCCTCAGTGAAAAAG 58.856 52.381 24.75 0.00 0.00 2.27
3225 3279 1.489230 ACCGGTCCTCAGTGAAAAAGT 59.511 47.619 0.00 0.00 0.00 2.66
3226 3280 2.701951 ACCGGTCCTCAGTGAAAAAGTA 59.298 45.455 0.00 0.00 0.00 2.24
3227 3281 3.135167 ACCGGTCCTCAGTGAAAAAGTAA 59.865 43.478 0.00 0.00 0.00 2.24
3228 3282 3.497262 CCGGTCCTCAGTGAAAAAGTAAC 59.503 47.826 0.00 0.00 0.00 2.50
3229 3283 3.183775 CGGTCCTCAGTGAAAAAGTAACG 59.816 47.826 0.00 0.00 0.00 3.18
3230 3284 3.059120 GGTCCTCAGTGAAAAAGTAACGC 60.059 47.826 0.00 0.00 0.00 4.84
3231 3285 2.798283 TCCTCAGTGAAAAAGTAACGCG 59.202 45.455 3.53 3.53 0.00 6.01
3232 3286 2.798283 CCTCAGTGAAAAAGTAACGCGA 59.202 45.455 15.93 0.00 0.00 5.87
3233 3287 3.120991 CCTCAGTGAAAAAGTAACGCGAG 60.121 47.826 15.93 0.00 0.00 5.03
3234 3288 2.798283 TCAGTGAAAAAGTAACGCGAGG 59.202 45.455 15.93 0.00 0.00 4.63
3235 3289 2.096417 CAGTGAAAAAGTAACGCGAGGG 60.096 50.000 15.93 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 15 2.557056 CTGTTCACCACGGACTCTCTTA 59.443 50.000 0.00 0.00 32.74 2.10
31 34 2.933495 TTCCACGTCGTTCCTATCTG 57.067 50.000 0.00 0.00 0.00 2.90
46 49 4.960469 AGAAGTAGGTGGTCGATAATTCCA 59.040 41.667 0.00 0.00 0.00 3.53
151 169 1.134670 GGAACGTTATCTCCTGCTGCT 60.135 52.381 0.00 0.00 0.00 4.24
165 183 1.000612 GGAGGAGGAGGAGGAACGT 59.999 63.158 0.00 0.00 0.00 3.99
314 335 3.533691 GAGAAGACGAACGCGCGG 61.534 66.667 35.22 19.11 42.48 6.46
315 336 3.533691 GGAGAAGACGAACGCGCG 61.534 66.667 30.96 30.96 42.48 6.86
316 337 3.533691 CGGAGAAGACGAACGCGC 61.534 66.667 5.73 0.00 42.48 6.86
321 342 0.886563 GGAGAACCGGAGAAGACGAA 59.113 55.000 9.46 0.00 0.00 3.85
357 378 0.250858 TCTTGTGTGTGCATCTGGGG 60.251 55.000 0.00 0.00 0.00 4.96
358 379 1.162698 CTCTTGTGTGTGCATCTGGG 58.837 55.000 0.00 0.00 0.00 4.45
359 380 2.074576 CTCTCTTGTGTGTGCATCTGG 58.925 52.381 0.00 0.00 0.00 3.86
365 386 1.953559 TCCAACTCTCTTGTGTGTGC 58.046 50.000 0.00 0.00 0.00 4.57
393 414 4.187056 GCCTTCAGCACGGTAGAC 57.813 61.111 0.00 0.00 42.97 2.59
403 424 3.965539 CTCCCTGCCGTGCCTTCAG 62.966 68.421 0.00 0.00 0.00 3.02
404 425 4.020617 CTCCCTGCCGTGCCTTCA 62.021 66.667 0.00 0.00 0.00 3.02
408 429 4.840005 GTAGCTCCCTGCCGTGCC 62.840 72.222 0.00 0.00 44.23 5.01
409 430 4.082523 TGTAGCTCCCTGCCGTGC 62.083 66.667 0.00 0.00 44.23 5.34
410 431 1.320344 TACTGTAGCTCCCTGCCGTG 61.320 60.000 0.00 0.00 44.23 4.94
411 432 1.000019 TACTGTAGCTCCCTGCCGT 60.000 57.895 0.00 0.00 44.23 5.68
412 433 1.736586 CTACTGTAGCTCCCTGCCG 59.263 63.158 1.26 0.00 44.23 5.69
422 443 3.036026 CACTGCGTGGCTACTGTAG 57.964 57.895 10.48 10.48 0.00 2.74
432 453 2.741985 TGCGATTCCCACTGCGTG 60.742 61.111 0.00 2.27 0.00 5.34
433 454 2.434884 CTGCGATTCCCACTGCGT 60.435 61.111 0.00 0.00 0.00 5.24
434 455 1.699656 CTTCTGCGATTCCCACTGCG 61.700 60.000 0.00 0.00 0.00 5.18
435 456 1.372087 CCTTCTGCGATTCCCACTGC 61.372 60.000 0.00 0.00 0.00 4.40
436 457 1.372087 GCCTTCTGCGATTCCCACTG 61.372 60.000 0.00 0.00 0.00 3.66
437 458 1.078143 GCCTTCTGCGATTCCCACT 60.078 57.895 0.00 0.00 0.00 4.00
438 459 1.377202 TGCCTTCTGCGATTCCCAC 60.377 57.895 0.00 0.00 45.60 4.61
439 460 1.377202 GTGCCTTCTGCGATTCCCA 60.377 57.895 0.00 0.00 45.60 4.37
440 461 1.078143 AGTGCCTTCTGCGATTCCC 60.078 57.895 0.00 0.00 45.60 3.97
441 462 2.093216 CAGTGCCTTCTGCGATTCC 58.907 57.895 0.00 0.00 45.60 3.01
448 469 3.060615 GCCCTGCAGTGCCTTCTG 61.061 66.667 10.40 0.00 38.35 3.02
449 470 4.357279 GGCCCTGCAGTGCCTTCT 62.357 66.667 30.38 0.00 44.46 2.85
454 475 1.072159 CTATAGGGCCCTGCAGTGC 59.928 63.158 35.81 13.30 0.00 4.40
455 476 1.072159 GCTATAGGGCCCTGCAGTG 59.928 63.158 35.81 19.38 0.00 3.66
456 477 1.384502 TGCTATAGGGCCCTGCAGT 60.385 57.895 35.81 19.10 0.00 4.40
457 478 1.072159 GTGCTATAGGGCCCTGCAG 59.928 63.158 35.81 28.80 34.15 4.41
458 479 0.105194 TAGTGCTATAGGGCCCTGCA 60.105 55.000 35.81 30.97 0.00 4.41
459 480 1.065854 CATAGTGCTATAGGGCCCTGC 60.066 57.143 35.81 28.63 0.00 4.85
460 481 2.260822 ACATAGTGCTATAGGGCCCTG 58.739 52.381 35.81 19.39 0.00 4.45
461 482 2.723530 ACATAGTGCTATAGGGCCCT 57.276 50.000 31.35 31.35 0.00 5.19
462 483 4.225267 ACATAACATAGTGCTATAGGGCCC 59.775 45.833 16.46 16.46 0.00 5.80
463 484 5.422214 ACATAACATAGTGCTATAGGGCC 57.578 43.478 0.00 0.00 0.00 5.80
464 485 7.036220 CAGTACATAACATAGTGCTATAGGGC 58.964 42.308 1.04 0.00 0.00 5.19
465 486 8.123639 ACAGTACATAACATAGTGCTATAGGG 57.876 38.462 1.04 0.00 0.00 3.53
467 488 9.776158 GCTACAGTACATAACATAGTGCTATAG 57.224 37.037 0.00 0.00 32.76 1.31
468 489 8.448615 CGCTACAGTACATAACATAGTGCTATA 58.551 37.037 0.00 0.00 0.00 1.31
469 490 7.174426 TCGCTACAGTACATAACATAGTGCTAT 59.826 37.037 0.00 0.00 33.10 2.97
470 491 6.484308 TCGCTACAGTACATAACATAGTGCTA 59.516 38.462 0.00 0.00 33.10 3.49
471 492 5.298527 TCGCTACAGTACATAACATAGTGCT 59.701 40.000 0.00 0.00 33.10 4.40
472 493 5.516996 TCGCTACAGTACATAACATAGTGC 58.483 41.667 0.00 0.00 33.10 4.40
473 494 8.076781 AGATTCGCTACAGTACATAACATAGTG 58.923 37.037 0.00 0.00 33.79 2.74
474 495 8.167605 AGATTCGCTACAGTACATAACATAGT 57.832 34.615 0.00 0.00 0.00 2.12
490 511 8.447924 ACAGATTTACTACAGTAGATTCGCTA 57.552 34.615 14.94 0.00 0.00 4.26
491 512 7.336161 ACAGATTTACTACAGTAGATTCGCT 57.664 36.000 14.94 3.37 0.00 4.93
492 513 8.344098 AGTACAGATTTACTACAGTAGATTCGC 58.656 37.037 14.94 1.18 30.09 4.70
493 514 9.653067 CAGTACAGATTTACTACAGTAGATTCG 57.347 37.037 14.94 5.01 30.76 3.34
497 518 9.107177 GCTACAGTACAGATTTACTACAGTAGA 57.893 37.037 14.94 0.00 33.19 2.59
498 519 8.063038 CGCTACAGTACAGATTTACTACAGTAG 58.937 40.741 6.00 6.00 33.87 2.57
499 520 7.011763 CCGCTACAGTACAGATTTACTACAGTA 59.988 40.741 0.00 0.00 30.76 2.74
500 521 6.183360 CCGCTACAGTACAGATTTACTACAGT 60.183 42.308 0.00 0.00 30.76 3.55
501 522 6.200100 CCGCTACAGTACAGATTTACTACAG 58.800 44.000 0.00 0.00 30.76 2.74
502 523 5.066893 CCCGCTACAGTACAGATTTACTACA 59.933 44.000 0.00 0.00 30.76 2.74
503 524 5.517904 CCCGCTACAGTACAGATTTACTAC 58.482 45.833 0.00 0.00 30.76 2.73
504 525 4.037208 GCCCGCTACAGTACAGATTTACTA 59.963 45.833 0.00 0.00 30.76 1.82
505 526 3.181478 GCCCGCTACAGTACAGATTTACT 60.181 47.826 0.00 0.00 32.16 2.24
506 527 3.121544 GCCCGCTACAGTACAGATTTAC 58.878 50.000 0.00 0.00 0.00 2.01
507 528 2.761767 TGCCCGCTACAGTACAGATTTA 59.238 45.455 0.00 0.00 0.00 1.40
508 529 1.553248 TGCCCGCTACAGTACAGATTT 59.447 47.619 0.00 0.00 0.00 2.17
509 530 1.134788 GTGCCCGCTACAGTACAGATT 60.135 52.381 0.00 0.00 0.00 2.40
510 531 0.460311 GTGCCCGCTACAGTACAGAT 59.540 55.000 0.00 0.00 0.00 2.90
511 532 1.601419 GGTGCCCGCTACAGTACAGA 61.601 60.000 0.00 0.00 0.00 3.41
512 533 1.153628 GGTGCCCGCTACAGTACAG 60.154 63.158 0.00 0.00 0.00 2.74
513 534 2.652095 GGGTGCCCGCTACAGTACA 61.652 63.158 0.00 0.00 0.00 2.90
514 535 2.186125 GGGTGCCCGCTACAGTAC 59.814 66.667 0.00 0.00 0.00 2.73
515 536 2.038329 AGGGTGCCCGCTACAGTA 59.962 61.111 0.98 0.00 41.95 2.74
516 537 3.706373 CAGGGTGCCCGCTACAGT 61.706 66.667 0.98 0.00 41.95 3.55
517 538 1.895020 TTACAGGGTGCCCGCTACAG 61.895 60.000 0.98 0.00 41.95 2.74
518 539 1.914263 TTACAGGGTGCCCGCTACA 60.914 57.895 0.98 0.00 41.95 2.74
519 540 1.449070 GTTACAGGGTGCCCGCTAC 60.449 63.158 0.98 0.00 41.95 3.58
520 541 1.914263 TGTTACAGGGTGCCCGCTA 60.914 57.895 0.98 0.00 41.95 4.26
521 542 3.246112 TGTTACAGGGTGCCCGCT 61.246 61.111 0.98 0.00 41.95 5.52
522 543 3.053896 GTGTTACAGGGTGCCCGC 61.054 66.667 0.98 0.00 41.95 6.13
523 544 2.359478 GGTGTTACAGGGTGCCCG 60.359 66.667 0.98 0.00 41.95 6.13
524 545 1.602605 GTGGTGTTACAGGGTGCCC 60.603 63.158 0.00 0.00 0.00 5.36
525 546 1.149627 TGTGGTGTTACAGGGTGCC 59.850 57.895 0.00 0.00 0.00 5.01
526 547 0.179029 AGTGTGGTGTTACAGGGTGC 60.179 55.000 0.00 0.00 0.00 5.01
527 548 1.134220 ACAGTGTGGTGTTACAGGGTG 60.134 52.381 0.00 0.00 0.00 4.61
528 549 1.209621 ACAGTGTGGTGTTACAGGGT 58.790 50.000 0.00 0.00 0.00 4.34
529 550 2.218603 GAACAGTGTGGTGTTACAGGG 58.781 52.381 0.00 0.00 40.83 4.45
530 551 2.912771 TGAACAGTGTGGTGTTACAGG 58.087 47.619 0.00 0.00 40.83 4.00
531 552 4.126437 TCATGAACAGTGTGGTGTTACAG 58.874 43.478 0.00 0.00 40.83 2.74
532 553 4.126437 CTCATGAACAGTGTGGTGTTACA 58.874 43.478 0.00 0.00 40.83 2.41
533 554 4.127171 ACTCATGAACAGTGTGGTGTTAC 58.873 43.478 0.00 0.00 40.83 2.50
534 555 4.415881 ACTCATGAACAGTGTGGTGTTA 57.584 40.909 0.00 0.00 40.83 2.41
535 556 3.281727 ACTCATGAACAGTGTGGTGTT 57.718 42.857 0.00 0.00 43.49 3.32
536 557 3.206150 GAACTCATGAACAGTGTGGTGT 58.794 45.455 0.00 0.00 0.00 4.16
537 558 3.205338 TGAACTCATGAACAGTGTGGTG 58.795 45.455 0.00 0.00 0.00 4.17
538 559 3.558931 TGAACTCATGAACAGTGTGGT 57.441 42.857 0.00 0.00 0.00 4.16
550 571 0.460109 TGCGCGCTACATGAACTCAT 60.460 50.000 33.29 0.00 36.96 2.90
551 572 1.078201 CTGCGCGCTACATGAACTCA 61.078 55.000 33.29 5.84 0.00 3.41
552 573 1.078759 ACTGCGCGCTACATGAACTC 61.079 55.000 33.29 0.00 0.00 3.01
553 574 1.079819 ACTGCGCGCTACATGAACT 60.080 52.632 33.29 0.40 0.00 3.01
554 575 1.059369 CACTGCGCGCTACATGAAC 59.941 57.895 33.29 0.00 0.00 3.18
555 576 0.669012 TTCACTGCGCGCTACATGAA 60.669 50.000 33.29 28.24 0.00 2.57
556 577 0.669012 TTTCACTGCGCGCTACATGA 60.669 50.000 33.29 24.62 0.00 3.07
557 578 0.165727 TTTTCACTGCGCGCTACATG 59.834 50.000 33.29 22.82 0.00 3.21
558 579 0.871722 TTTTTCACTGCGCGCTACAT 59.128 45.000 33.29 11.99 0.00 2.29
559 580 0.871722 ATTTTTCACTGCGCGCTACA 59.128 45.000 33.29 11.56 0.00 2.74
560 581 1.136085 TGATTTTTCACTGCGCGCTAC 60.136 47.619 33.29 3.49 0.00 3.58
561 582 1.152510 TGATTTTTCACTGCGCGCTA 58.847 45.000 33.29 17.49 0.00 4.26
562 583 0.523072 ATGATTTTTCACTGCGCGCT 59.477 45.000 33.29 10.46 0.00 5.92
563 584 2.104144 CTATGATTTTTCACTGCGCGC 58.896 47.619 27.26 27.26 0.00 6.86
564 585 3.544834 CCTCTATGATTTTTCACTGCGCG 60.545 47.826 0.00 0.00 0.00 6.86
565 586 3.790123 GCCTCTATGATTTTTCACTGCGC 60.790 47.826 0.00 0.00 0.00 6.09
566 587 3.374988 TGCCTCTATGATTTTTCACTGCG 59.625 43.478 0.00 0.00 0.00 5.18
567 588 4.397417 AGTGCCTCTATGATTTTTCACTGC 59.603 41.667 0.00 0.00 32.96 4.40
568 589 5.877031 CAGTGCCTCTATGATTTTTCACTG 58.123 41.667 0.00 0.00 42.41 3.66
569 590 4.397417 GCAGTGCCTCTATGATTTTTCACT 59.603 41.667 2.85 0.00 34.29 3.41
570 591 4.156556 TGCAGTGCCTCTATGATTTTTCAC 59.843 41.667 13.72 0.00 0.00 3.18
571 592 4.334552 TGCAGTGCCTCTATGATTTTTCA 58.665 39.130 13.72 0.00 0.00 2.69
572 593 4.201990 CCTGCAGTGCCTCTATGATTTTTC 60.202 45.833 13.72 0.00 0.00 2.29
573 594 3.698040 CCTGCAGTGCCTCTATGATTTTT 59.302 43.478 13.72 0.00 0.00 1.94
574 595 3.285484 CCTGCAGTGCCTCTATGATTTT 58.715 45.455 13.72 0.00 0.00 1.82
575 596 2.928334 CCTGCAGTGCCTCTATGATTT 58.072 47.619 13.72 0.00 0.00 2.17
576 597 1.476471 GCCTGCAGTGCCTCTATGATT 60.476 52.381 13.72 0.00 0.00 2.57
577 598 0.108207 GCCTGCAGTGCCTCTATGAT 59.892 55.000 13.72 0.00 0.00 2.45
578 599 0.979709 AGCCTGCAGTGCCTCTATGA 60.980 55.000 19.56 0.00 0.00 2.15
579 600 0.755079 TAGCCTGCAGTGCCTCTATG 59.245 55.000 19.56 0.64 0.00 2.23
580 601 0.755686 GTAGCCTGCAGTGCCTCTAT 59.244 55.000 19.56 7.16 0.00 1.98
581 602 0.324738 AGTAGCCTGCAGTGCCTCTA 60.325 55.000 19.56 8.21 0.00 2.43
582 603 1.611851 AGTAGCCTGCAGTGCCTCT 60.612 57.895 19.56 15.57 0.00 3.69
583 604 1.449246 CAGTAGCCTGCAGTGCCTC 60.449 63.158 19.56 14.03 0.00 4.70
584 605 0.904865 TACAGTAGCCTGCAGTGCCT 60.905 55.000 19.56 12.25 42.81 4.75
585 606 0.460987 CTACAGTAGCCTGCAGTGCC 60.461 60.000 19.56 8.76 42.81 5.01
586 607 1.086634 GCTACAGTAGCCTGCAGTGC 61.087 60.000 20.53 15.45 45.95 4.40
587 608 3.056628 GCTACAGTAGCCTGCAGTG 57.943 57.895 20.53 6.33 45.95 3.66
596 617 1.133853 ACGGTAGGGGAGCTACAGTAG 60.134 57.143 0.00 2.85 34.82 2.57
597 618 0.921896 ACGGTAGGGGAGCTACAGTA 59.078 55.000 0.00 0.00 34.82 2.74
598 619 0.683504 CACGGTAGGGGAGCTACAGT 60.684 60.000 0.00 0.00 36.45 3.55
599 620 2.017559 GCACGGTAGGGGAGCTACAG 62.018 65.000 0.00 0.00 0.00 2.74
600 621 2.056223 GCACGGTAGGGGAGCTACA 61.056 63.158 0.00 0.00 0.00 2.74
601 622 2.794028 GGCACGGTAGGGGAGCTAC 61.794 68.421 0.00 0.00 0.00 3.58
602 623 2.443390 GGCACGGTAGGGGAGCTA 60.443 66.667 0.00 0.00 0.00 3.32
603 624 3.925914 AAGGCACGGTAGGGGAGCT 62.926 63.158 0.00 0.00 0.00 4.09
604 625 3.387225 GAAGGCACGGTAGGGGAGC 62.387 68.421 0.00 0.00 0.00 4.70
605 626 1.961180 CTGAAGGCACGGTAGGGGAG 61.961 65.000 0.00 0.00 0.00 4.30
606 627 1.987855 CTGAAGGCACGGTAGGGGA 60.988 63.158 0.00 0.00 0.00 4.81
607 628 2.584608 CTGAAGGCACGGTAGGGG 59.415 66.667 0.00 0.00 0.00 4.79
608 629 2.125106 GCTGAAGGCACGGTAGGG 60.125 66.667 0.00 0.00 41.35 3.53
617 638 1.805945 CGTCTACCGTGCTGAAGGC 60.806 63.158 0.00 0.00 42.22 4.35
618 639 0.179161 CTCGTCTACCGTGCTGAAGG 60.179 60.000 0.00 0.00 37.94 3.46
619 640 3.314339 CTCGTCTACCGTGCTGAAG 57.686 57.895 0.00 0.00 37.94 3.02
628 649 2.493501 GGAACCGGCTCGTCTACC 59.506 66.667 0.00 0.00 0.00 3.18
629 650 2.493501 GGGAACCGGCTCGTCTAC 59.506 66.667 0.00 0.00 40.86 2.59
641 662 5.341617 CGTATTACTGAACTCTCTGGGAAC 58.658 45.833 0.00 0.00 0.00 3.62
642 663 4.401519 CCGTATTACTGAACTCTCTGGGAA 59.598 45.833 0.00 0.00 0.00 3.97
643 664 3.952323 CCGTATTACTGAACTCTCTGGGA 59.048 47.826 0.00 0.00 0.00 4.37
644 665 3.068307 CCCGTATTACTGAACTCTCTGGG 59.932 52.174 0.00 0.00 0.00 4.45
645 666 3.952323 TCCCGTATTACTGAACTCTCTGG 59.048 47.826 0.00 0.00 0.00 3.86
646 667 4.641094 AGTCCCGTATTACTGAACTCTCTG 59.359 45.833 0.00 0.00 0.00 3.35
656 677 2.167900 GGAACAGCAGTCCCGTATTACT 59.832 50.000 0.00 0.00 0.00 2.24
776 797 3.078196 TAGATCCAACGGCCCGCA 61.078 61.111 1.23 0.00 0.00 5.69
807 828 3.186656 AAGACGTTTGACCCGGGGG 62.187 63.158 27.92 5.70 42.03 5.40
808 829 1.670083 GAAGACGTTTGACCCGGGG 60.670 63.158 27.92 12.73 0.00 5.73
809 830 2.025418 CGAAGACGTTTGACCCGGG 61.025 63.158 22.25 22.25 34.56 5.73
810 831 3.545911 CGAAGACGTTTGACCCGG 58.454 61.111 0.00 0.00 34.56 5.73
881 902 2.494677 CGGAGGTGGAGGAGTACTG 58.505 63.158 0.00 0.00 0.00 2.74
922 947 0.031178 AAACGAGGCAAGCAAGCAAG 59.969 50.000 2.78 0.00 35.83 4.01
923 948 0.248990 CAAACGAGGCAAGCAAGCAA 60.249 50.000 2.78 0.00 35.83 3.91
924 949 1.359833 CAAACGAGGCAAGCAAGCA 59.640 52.632 2.78 0.00 35.83 3.91
925 950 0.936297 CACAAACGAGGCAAGCAAGC 60.936 55.000 0.00 0.00 0.00 4.01
983 1013 1.078637 ATCGCTGATGTGCTGCTGT 60.079 52.632 0.00 0.00 39.10 4.40
1041 1071 1.001887 AGCCTCGTCGTCTTCCTCT 60.002 57.895 0.00 0.00 0.00 3.69
1128 1158 2.043248 GTCCTCCTCCCACCGCTA 60.043 66.667 0.00 0.00 0.00 4.26
1962 1992 0.888736 CCAGCCGTTCAATGGTGTCA 60.889 55.000 0.00 0.00 0.00 3.58
2190 2220 2.028658 GTCAGACTGAGCATTGAGGTGA 60.029 50.000 5.10 0.00 0.00 4.02
2211 2241 3.451894 GGCAACTCGGCATTGGGG 61.452 66.667 0.00 0.00 40.76 4.96
2380 2434 7.590322 GTCAAGCAATAGACAATGAATGCATAG 59.410 37.037 0.00 0.00 36.30 2.23
2549 2603 3.584848 ACTAGAAGGAGCACAGTGGATTT 59.415 43.478 1.84 0.00 0.00 2.17
2553 2607 2.175202 AGACTAGAAGGAGCACAGTGG 58.825 52.381 1.84 0.00 0.00 4.00
2575 2629 6.651225 AGCAGGAGTTCAACTTTACAGATTAC 59.349 38.462 0.00 0.00 0.00 1.89
2624 2678 9.374711 TCCCAAAGTTTTCCAGAAGTAATTAAT 57.625 29.630 0.00 0.00 0.00 1.40
2654 2708 8.627208 AGATATCAGTTATGTGCCAAAATAGG 57.373 34.615 5.32 0.00 0.00 2.57
2665 2719 8.311395 TGACCAGAGAAAGATATCAGTTATGT 57.689 34.615 5.32 0.00 0.00 2.29
2671 2725 9.170734 TCAATTTTGACCAGAGAAAGATATCAG 57.829 33.333 5.32 0.00 31.01 2.90
2777 2831 5.782893 TTAAAGTATTTTGTGGCAGCTGT 57.217 34.783 16.64 0.00 40.09 4.40
2802 2856 6.208007 TCAAGCAGATTGAACATCACTGAAAT 59.792 34.615 0.00 0.00 45.00 2.17
2803 2857 5.532032 TCAAGCAGATTGAACATCACTGAAA 59.468 36.000 0.00 0.00 45.00 2.69
2804 2858 5.065235 TCAAGCAGATTGAACATCACTGAA 58.935 37.500 0.00 0.00 45.00 3.02
2805 2859 4.644498 TCAAGCAGATTGAACATCACTGA 58.356 39.130 0.00 0.00 45.00 3.41
2822 2876 2.686558 TTCACGTTTCAGCATCAAGC 57.313 45.000 0.00 0.00 46.19 4.01
2823 2877 5.214417 TGAATTTCACGTTTCAGCATCAAG 58.786 37.500 0.00 0.00 0.00 3.02
2866 2920 5.305902 GGGGGTACATTCTCCTTTTCAAAAA 59.694 40.000 0.00 0.00 0.00 1.94
2867 2921 4.836175 GGGGGTACATTCTCCTTTTCAAAA 59.164 41.667 0.00 0.00 0.00 2.44
2868 2922 4.412843 GGGGGTACATTCTCCTTTTCAAA 58.587 43.478 0.00 0.00 0.00 2.69
2869 2923 3.560453 CGGGGGTACATTCTCCTTTTCAA 60.560 47.826 0.00 0.00 0.00 2.69
2870 2924 2.026636 CGGGGGTACATTCTCCTTTTCA 60.027 50.000 0.00 0.00 0.00 2.69
2871 2925 2.640184 CGGGGGTACATTCTCCTTTTC 58.360 52.381 0.00 0.00 0.00 2.29
2872 2926 1.283905 CCGGGGGTACATTCTCCTTTT 59.716 52.381 0.00 0.00 0.00 2.27
2873 2927 0.916809 CCGGGGGTACATTCTCCTTT 59.083 55.000 0.00 0.00 0.00 3.11
2874 2928 1.632965 GCCGGGGGTACATTCTCCTT 61.633 60.000 2.18 0.00 0.00 3.36
2875 2929 2.070650 GCCGGGGGTACATTCTCCT 61.071 63.158 2.18 0.00 0.00 3.69
2876 2930 2.509422 GCCGGGGGTACATTCTCC 59.491 66.667 2.18 0.00 0.00 3.71
2877 2931 2.041206 GAGGCCGGGGGTACATTCTC 62.041 65.000 2.18 0.00 0.00 2.87
2878 2932 2.042261 AGGCCGGGGGTACATTCT 59.958 61.111 2.18 0.00 0.00 2.40
2879 2933 2.070650 AGAGGCCGGGGGTACATTC 61.071 63.158 2.18 0.00 0.00 2.67
2880 2934 2.042261 AGAGGCCGGGGGTACATT 59.958 61.111 2.18 0.00 0.00 2.71
2881 2935 2.768344 CAGAGGCCGGGGGTACAT 60.768 66.667 2.18 0.00 0.00 2.29
2884 2938 4.815973 ATGCAGAGGCCGGGGGTA 62.816 66.667 2.18 0.00 40.13 3.69
2887 2941 4.559063 CAGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
2888 2942 4.559063 CCAGATGCAGAGGCCGGG 62.559 72.222 2.18 0.00 40.13 5.73
2889 2943 4.559063 CCCAGATGCAGAGGCCGG 62.559 72.222 0.00 0.00 40.13 6.13
2891 2945 2.923634 AATGCCCAGATGCAGAGGCC 62.924 60.000 14.36 0.00 45.93 5.19
2892 2946 1.455217 AATGCCCAGATGCAGAGGC 60.455 57.895 11.10 11.10 45.93 4.70
2893 2947 1.735376 GCAATGCCCAGATGCAGAGG 61.735 60.000 0.00 0.00 45.93 3.69
2894 2948 1.035385 TGCAATGCCCAGATGCAGAG 61.035 55.000 1.53 0.00 45.93 3.35
2895 2949 1.000646 TGCAATGCCCAGATGCAGA 60.001 52.632 1.53 0.00 45.93 4.26
2896 2950 3.610976 TGCAATGCCCAGATGCAG 58.389 55.556 1.53 0.00 45.93 4.41
2898 2952 4.750460 CATGCAATGCCCAGATGC 57.250 55.556 1.53 0.00 37.62 3.91
2927 2981 8.527810 CCTTGTAAGGGCTTTGTGAATAATTAA 58.472 33.333 2.63 0.00 42.66 1.40
2928 2982 8.062065 CCTTGTAAGGGCTTTGTGAATAATTA 57.938 34.615 2.63 0.00 42.66 1.40
2929 2983 6.935167 CCTTGTAAGGGCTTTGTGAATAATT 58.065 36.000 2.63 0.00 42.66 1.40
2930 2984 6.530019 CCTTGTAAGGGCTTTGTGAATAAT 57.470 37.500 2.63 0.00 42.66 1.28
2931 2985 5.975693 CCTTGTAAGGGCTTTGTGAATAA 57.024 39.130 2.63 0.00 42.66 1.40
2945 2999 6.034591 CAGACTTACCGATGTACCTTGTAAG 58.965 44.000 14.84 14.84 42.43 2.34
2946 3000 5.711506 TCAGACTTACCGATGTACCTTGTAA 59.288 40.000 0.00 0.00 0.00 2.41
2947 3001 5.255687 TCAGACTTACCGATGTACCTTGTA 58.744 41.667 0.00 0.00 0.00 2.41
2948 3002 4.084287 TCAGACTTACCGATGTACCTTGT 58.916 43.478 0.00 0.00 0.00 3.16
2949 3003 4.713824 TCAGACTTACCGATGTACCTTG 57.286 45.455 0.00 0.00 0.00 3.61
2950 3004 4.381718 GCTTCAGACTTACCGATGTACCTT 60.382 45.833 0.00 0.00 0.00 3.50
2951 3005 3.130693 GCTTCAGACTTACCGATGTACCT 59.869 47.826 0.00 0.00 0.00 3.08
2952 3006 3.445857 GCTTCAGACTTACCGATGTACC 58.554 50.000 0.00 0.00 0.00 3.34
2953 3007 3.119245 TGGCTTCAGACTTACCGATGTAC 60.119 47.826 0.00 0.00 0.00 2.90
2954 3008 3.093814 TGGCTTCAGACTTACCGATGTA 58.906 45.455 0.00 0.00 0.00 2.29
2955 3009 1.899814 TGGCTTCAGACTTACCGATGT 59.100 47.619 0.00 0.00 0.00 3.06
2956 3010 2.271800 GTGGCTTCAGACTTACCGATG 58.728 52.381 0.00 0.00 0.00 3.84
2957 3011 1.207329 GGTGGCTTCAGACTTACCGAT 59.793 52.381 0.00 0.00 0.00 4.18
2958 3012 0.606604 GGTGGCTTCAGACTTACCGA 59.393 55.000 0.00 0.00 0.00 4.69
2959 3013 0.320374 TGGTGGCTTCAGACTTACCG 59.680 55.000 0.00 0.00 0.00 4.02
2960 3014 2.749621 CAATGGTGGCTTCAGACTTACC 59.250 50.000 0.00 0.00 0.00 2.85
2961 3015 2.749621 CCAATGGTGGCTTCAGACTTAC 59.250 50.000 0.00 0.00 38.35 2.34
2962 3016 3.071874 CCAATGGTGGCTTCAGACTTA 57.928 47.619 0.00 0.00 38.35 2.24
2963 3017 1.915141 CCAATGGTGGCTTCAGACTT 58.085 50.000 0.00 0.00 38.35 3.01
2964 3018 3.658398 CCAATGGTGGCTTCAGACT 57.342 52.632 0.00 0.00 38.35 3.24
2974 3028 1.600164 CGACAAGTGTTGCCAATGGTG 60.600 52.381 0.00 0.00 0.00 4.17
2975 3029 0.667993 CGACAAGTGTTGCCAATGGT 59.332 50.000 0.00 0.00 0.00 3.55
2976 3030 3.477504 CGACAAGTGTTGCCAATGG 57.522 52.632 0.00 0.00 0.00 3.16
2983 3037 2.440539 AGGAGTAGCGACAAGTGTTG 57.559 50.000 0.00 0.00 0.00 3.33
2984 3038 3.130693 GGATAGGAGTAGCGACAAGTGTT 59.869 47.826 0.00 0.00 0.00 3.32
2985 3039 2.688958 GGATAGGAGTAGCGACAAGTGT 59.311 50.000 0.00 0.00 0.00 3.55
2986 3040 2.034812 GGGATAGGAGTAGCGACAAGTG 59.965 54.545 0.00 0.00 0.00 3.16
2987 3041 2.308690 GGGATAGGAGTAGCGACAAGT 58.691 52.381 0.00 0.00 0.00 3.16
2988 3042 1.614413 GGGGATAGGAGTAGCGACAAG 59.386 57.143 0.00 0.00 0.00 3.16
2989 3043 1.700955 GGGGATAGGAGTAGCGACAA 58.299 55.000 0.00 0.00 0.00 3.18
2990 3044 0.536687 CGGGGATAGGAGTAGCGACA 60.537 60.000 0.00 0.00 0.00 4.35
2991 3045 0.250640 TCGGGGATAGGAGTAGCGAC 60.251 60.000 0.00 0.00 0.00 5.19
2992 3046 0.697079 ATCGGGGATAGGAGTAGCGA 59.303 55.000 0.00 0.00 0.00 4.93
2993 3047 0.811915 CATCGGGGATAGGAGTAGCG 59.188 60.000 0.00 0.00 0.00 4.26
2994 3048 0.533032 GCATCGGGGATAGGAGTAGC 59.467 60.000 0.00 0.00 0.00 3.58
2995 3049 1.187087 GGCATCGGGGATAGGAGTAG 58.813 60.000 0.00 0.00 0.00 2.57
2996 3050 0.252103 GGGCATCGGGGATAGGAGTA 60.252 60.000 0.00 0.00 0.00 2.59
2997 3051 1.536662 GGGCATCGGGGATAGGAGT 60.537 63.158 0.00 0.00 0.00 3.85
2998 3052 1.229336 AGGGCATCGGGGATAGGAG 60.229 63.158 0.00 0.00 0.00 3.69
2999 3053 1.229209 GAGGGCATCGGGGATAGGA 60.229 63.158 0.00 0.00 0.00 2.94
3000 3054 2.294078 GGAGGGCATCGGGGATAGG 61.294 68.421 0.00 0.00 0.00 2.57
3001 3055 2.650116 CGGAGGGCATCGGGGATAG 61.650 68.421 0.00 0.00 0.00 2.08
3002 3056 2.603473 CGGAGGGCATCGGGGATA 60.603 66.667 0.00 0.00 0.00 2.59
3023 3077 4.468689 GAAGGGGAGGCGAACGGG 62.469 72.222 0.00 0.00 0.00 5.28
3024 3078 4.468689 GGAAGGGGAGGCGAACGG 62.469 72.222 0.00 0.00 0.00 4.44
3025 3079 4.468689 GGGAAGGGGAGGCGAACG 62.469 72.222 0.00 0.00 0.00 3.95
3026 3080 3.009714 AGGGAAGGGGAGGCGAAC 61.010 66.667 0.00 0.00 0.00 3.95
3027 3081 1.882189 TAGAGGGAAGGGGAGGCGAA 61.882 60.000 0.00 0.00 0.00 4.70
3028 3082 2.299727 CTAGAGGGAAGGGGAGGCGA 62.300 65.000 0.00 0.00 0.00 5.54
3029 3083 1.834822 CTAGAGGGAAGGGGAGGCG 60.835 68.421 0.00 0.00 0.00 5.52
3030 3084 0.192315 ATCTAGAGGGAAGGGGAGGC 59.808 60.000 0.00 0.00 0.00 4.70
3031 3085 1.203250 GGATCTAGAGGGAAGGGGAGG 60.203 61.905 0.00 0.00 0.00 4.30
3032 3086 1.203250 GGGATCTAGAGGGAAGGGGAG 60.203 61.905 0.00 0.00 0.00 4.30
3033 3087 0.868186 GGGATCTAGAGGGAAGGGGA 59.132 60.000 0.00 0.00 0.00 4.81
3034 3088 0.543174 CGGGATCTAGAGGGAAGGGG 60.543 65.000 0.00 0.00 0.00 4.79
3035 3089 0.188834 ACGGGATCTAGAGGGAAGGG 59.811 60.000 0.00 0.00 0.00 3.95
3036 3090 1.623163 GACGGGATCTAGAGGGAAGG 58.377 60.000 0.00 0.00 0.00 3.46
3037 3091 1.623163 GGACGGGATCTAGAGGGAAG 58.377 60.000 0.00 0.00 0.00 3.46
3038 3092 0.178998 CGGACGGGATCTAGAGGGAA 60.179 60.000 0.00 0.00 0.00 3.97
3039 3093 1.351080 ACGGACGGGATCTAGAGGGA 61.351 60.000 0.00 0.00 0.00 4.20
3040 3094 0.890090 GACGGACGGGATCTAGAGGG 60.890 65.000 0.00 0.00 0.00 4.30
3041 3095 0.179026 TGACGGACGGGATCTAGAGG 60.179 60.000 0.00 0.00 0.00 3.69
3042 3096 0.945813 GTGACGGACGGGATCTAGAG 59.054 60.000 0.00 0.00 0.00 2.43
3043 3097 0.545171 AGTGACGGACGGGATCTAGA 59.455 55.000 0.00 0.00 0.00 2.43
3044 3098 0.945813 GAGTGACGGACGGGATCTAG 59.054 60.000 0.00 0.00 0.00 2.43
3045 3099 0.465097 GGAGTGACGGACGGGATCTA 60.465 60.000 0.00 0.00 0.00 1.98
3046 3100 1.753463 GGAGTGACGGACGGGATCT 60.753 63.158 0.00 0.00 0.00 2.75
3047 3101 0.465097 TAGGAGTGACGGACGGGATC 60.465 60.000 0.00 0.00 0.00 3.36
3048 3102 0.185416 ATAGGAGTGACGGACGGGAT 59.815 55.000 0.00 0.00 0.00 3.85
3049 3103 0.465097 GATAGGAGTGACGGACGGGA 60.465 60.000 0.00 0.00 0.00 5.14
3050 3104 1.453762 GGATAGGAGTGACGGACGGG 61.454 65.000 0.00 0.00 0.00 5.28
3051 3105 1.453762 GGGATAGGAGTGACGGACGG 61.454 65.000 0.00 0.00 0.00 4.79
3052 3106 0.465824 AGGGATAGGAGTGACGGACG 60.466 60.000 0.00 0.00 0.00 4.79
3053 3107 1.320507 GAGGGATAGGAGTGACGGAC 58.679 60.000 0.00 0.00 0.00 4.79
3054 3108 0.185416 GGAGGGATAGGAGTGACGGA 59.815 60.000 0.00 0.00 0.00 4.69
3055 3109 0.828343 GGGAGGGATAGGAGTGACGG 60.828 65.000 0.00 0.00 0.00 4.79
3056 3110 0.828343 GGGGAGGGATAGGAGTGACG 60.828 65.000 0.00 0.00 0.00 4.35
3057 3111 0.563672 AGGGGAGGGATAGGAGTGAC 59.436 60.000 0.00 0.00 0.00 3.67
3058 3112 0.861155 GAGGGGAGGGATAGGAGTGA 59.139 60.000 0.00 0.00 0.00 3.41
3059 3113 0.178918 GGAGGGGAGGGATAGGAGTG 60.179 65.000 0.00 0.00 0.00 3.51
3060 3114 0.633835 TGGAGGGGAGGGATAGGAGT 60.634 60.000 0.00 0.00 0.00 3.85
3061 3115 0.178918 GTGGAGGGGAGGGATAGGAG 60.179 65.000 0.00 0.00 0.00 3.69
3062 3116 0.934302 TGTGGAGGGGAGGGATAGGA 60.934 60.000 0.00 0.00 0.00 2.94
3063 3117 0.194587 ATGTGGAGGGGAGGGATAGG 59.805 60.000 0.00 0.00 0.00 2.57
3064 3118 1.650528 GATGTGGAGGGGAGGGATAG 58.349 60.000 0.00 0.00 0.00 2.08
3065 3119 0.193574 GGATGTGGAGGGGAGGGATA 59.806 60.000 0.00 0.00 0.00 2.59
3066 3120 1.073397 GGATGTGGAGGGGAGGGAT 60.073 63.158 0.00 0.00 0.00 3.85
3067 3121 2.372688 GGATGTGGAGGGGAGGGA 59.627 66.667 0.00 0.00 0.00 4.20
3068 3122 2.774351 GGGATGTGGAGGGGAGGG 60.774 72.222 0.00 0.00 0.00 4.30
3069 3123 1.768077 GAGGGATGTGGAGGGGAGG 60.768 68.421 0.00 0.00 0.00 4.30
3070 3124 0.621571 TTGAGGGATGTGGAGGGGAG 60.622 60.000 0.00 0.00 0.00 4.30
3071 3125 0.621571 CTTGAGGGATGTGGAGGGGA 60.622 60.000 0.00 0.00 0.00 4.81
3072 3126 1.639635 CCTTGAGGGATGTGGAGGGG 61.640 65.000 0.00 0.00 37.23 4.79
3073 3127 0.916358 ACCTTGAGGGATGTGGAGGG 60.916 60.000 1.54 0.00 40.27 4.30
3074 3128 1.879575 TACCTTGAGGGATGTGGAGG 58.120 55.000 1.54 0.00 40.27 4.30
3075 3129 5.630415 TTATTACCTTGAGGGATGTGGAG 57.370 43.478 1.54 0.00 40.27 3.86
3076 3130 6.395780 TTTTATTACCTTGAGGGATGTGGA 57.604 37.500 1.54 0.00 40.27 4.02
3097 3151 9.778993 CGAAGACAATTCATGTAGATCATTTTT 57.221 29.630 0.00 0.00 44.12 1.94
3098 3152 8.950210 ACGAAGACAATTCATGTAGATCATTTT 58.050 29.630 0.00 0.00 44.12 1.82
3099 3153 8.498054 ACGAAGACAATTCATGTAGATCATTT 57.502 30.769 0.00 0.00 44.12 2.32
3100 3154 7.984050 AGACGAAGACAATTCATGTAGATCATT 59.016 33.333 0.00 0.00 44.12 2.57
3101 3155 7.495901 AGACGAAGACAATTCATGTAGATCAT 58.504 34.615 0.00 0.00 44.12 2.45
3102 3156 6.867550 AGACGAAGACAATTCATGTAGATCA 58.132 36.000 0.00 0.00 44.12 2.92
3103 3157 6.141527 CGAGACGAAGACAATTCATGTAGATC 59.858 42.308 0.00 0.00 44.12 2.75
3104 3158 5.974158 CGAGACGAAGACAATTCATGTAGAT 59.026 40.000 0.00 0.00 44.12 1.98
3105 3159 5.106277 ACGAGACGAAGACAATTCATGTAGA 60.106 40.000 0.00 0.00 44.12 2.59
3106 3160 5.096169 ACGAGACGAAGACAATTCATGTAG 58.904 41.667 0.00 0.00 44.12 2.74
3107 3161 5.055642 ACGAGACGAAGACAATTCATGTA 57.944 39.130 0.00 0.00 44.12 2.29
3108 3162 5.425238 CGACGAGACGAAGACAATTCATGT 61.425 45.833 0.00 0.00 39.33 3.21
3109 3163 3.001660 CGACGAGACGAAGACAATTCATG 60.002 47.826 0.00 0.00 35.09 3.07
3110 3164 3.119955 TCGACGAGACGAAGACAATTCAT 60.120 43.478 0.00 0.00 39.34 2.57
3111 3165 2.224784 TCGACGAGACGAAGACAATTCA 59.775 45.455 0.00 0.00 39.34 2.57
3112 3166 2.847901 TCGACGAGACGAAGACAATTC 58.152 47.619 0.00 0.00 39.34 2.17
3113 3167 2.983402 TCGACGAGACGAAGACAATT 57.017 45.000 0.00 0.00 39.34 2.32
3114 3168 2.983402 TTCGACGAGACGAAGACAAT 57.017 45.000 6.33 0.00 45.21 2.71
3121 3175 0.179207 CAACCGATTCGACGAGACGA 60.179 55.000 21.03 0.00 40.55 4.20
3122 3176 1.132199 CCAACCGATTCGACGAGACG 61.132 60.000 7.83 15.28 35.09 4.18
3123 3177 0.109412 ACCAACCGATTCGACGAGAC 60.109 55.000 7.83 0.00 35.09 3.36
3124 3178 0.599558 AACCAACCGATTCGACGAGA 59.400 50.000 7.83 0.00 35.09 4.04
3125 3179 1.425412 AAACCAACCGATTCGACGAG 58.575 50.000 7.83 0.00 35.09 4.18
3126 3180 1.527736 CAAAACCAACCGATTCGACGA 59.472 47.619 7.83 0.00 35.09 4.20
3127 3181 1.527736 TCAAAACCAACCGATTCGACG 59.472 47.619 7.83 0.00 0.00 5.12
3128 3182 3.824414 ATCAAAACCAACCGATTCGAC 57.176 42.857 7.83 0.00 0.00 4.20
3129 3183 7.612668 TTTATATCAAAACCAACCGATTCGA 57.387 32.000 7.83 0.00 0.00 3.71
3130 3184 8.676454 TTTTTATATCAAAACCAACCGATTCG 57.324 30.769 0.00 0.00 0.00 3.34
3134 3188 9.796120 GATGATTTTTATATCAAAACCAACCGA 57.204 29.630 0.00 0.00 38.01 4.69
3135 3189 9.030301 GGATGATTTTTATATCAAAACCAACCG 57.970 33.333 1.26 0.00 38.01 4.44
3136 3190 9.325198 GGGATGATTTTTATATCAAAACCAACC 57.675 33.333 7.07 7.07 38.01 3.77
3137 3191 9.883142 TGGGATGATTTTTATATCAAAACCAAC 57.117 29.630 0.00 0.00 38.01 3.77
3142 3196 9.979578 CGGATTGGGATGATTTTTATATCAAAA 57.020 29.630 0.00 0.00 38.01 2.44
3143 3197 9.360901 TCGGATTGGGATGATTTTTATATCAAA 57.639 29.630 0.00 0.00 38.01 2.69
3144 3198 8.932434 TCGGATTGGGATGATTTTTATATCAA 57.068 30.769 0.00 0.00 38.01 2.57
3145 3199 8.163408 ACTCGGATTGGGATGATTTTTATATCA 58.837 33.333 0.00 0.00 38.78 2.15
3146 3200 8.567285 ACTCGGATTGGGATGATTTTTATATC 57.433 34.615 0.00 0.00 0.00 1.63
3147 3201 8.940397 AACTCGGATTGGGATGATTTTTATAT 57.060 30.769 0.00 0.00 0.00 0.86
3148 3202 7.447238 GGAACTCGGATTGGGATGATTTTTATA 59.553 37.037 0.00 0.00 0.00 0.98
3149 3203 6.265422 GGAACTCGGATTGGGATGATTTTTAT 59.735 38.462 0.00 0.00 0.00 1.40
3150 3204 5.592688 GGAACTCGGATTGGGATGATTTTTA 59.407 40.000 0.00 0.00 0.00 1.52
3151 3205 4.402474 GGAACTCGGATTGGGATGATTTTT 59.598 41.667 0.00 0.00 0.00 1.94
3152 3206 3.954258 GGAACTCGGATTGGGATGATTTT 59.046 43.478 0.00 0.00 0.00 1.82
3153 3207 3.203040 AGGAACTCGGATTGGGATGATTT 59.797 43.478 0.00 0.00 0.00 2.17
3154 3208 2.780010 AGGAACTCGGATTGGGATGATT 59.220 45.455 0.00 0.00 0.00 2.57
3155 3209 2.412591 AGGAACTCGGATTGGGATGAT 58.587 47.619 0.00 0.00 0.00 2.45
3156 3210 1.879575 AGGAACTCGGATTGGGATGA 58.120 50.000 0.00 0.00 0.00 2.92
3157 3211 3.668447 CATAGGAACTCGGATTGGGATG 58.332 50.000 0.00 0.00 41.75 3.51
3158 3212 2.039084 GCATAGGAACTCGGATTGGGAT 59.961 50.000 0.00 0.00 41.75 3.85
3159 3213 1.416401 GCATAGGAACTCGGATTGGGA 59.584 52.381 0.00 0.00 41.75 4.37
3160 3214 1.140852 TGCATAGGAACTCGGATTGGG 59.859 52.381 0.00 0.00 41.75 4.12
3161 3215 2.620251 TGCATAGGAACTCGGATTGG 57.380 50.000 0.00 0.00 41.75 3.16
3162 3216 4.396166 ACTTTTGCATAGGAACTCGGATTG 59.604 41.667 0.00 0.00 41.75 2.67
3163 3217 4.589908 ACTTTTGCATAGGAACTCGGATT 58.410 39.130 0.00 0.00 41.75 3.01
3164 3218 4.222124 ACTTTTGCATAGGAACTCGGAT 57.778 40.909 0.00 0.00 41.75 4.18
3165 3219 3.695830 ACTTTTGCATAGGAACTCGGA 57.304 42.857 0.00 0.00 41.75 4.55
3166 3220 5.175859 TCTAACTTTTGCATAGGAACTCGG 58.824 41.667 0.00 0.00 41.75 4.63
3167 3221 5.292101 CCTCTAACTTTTGCATAGGAACTCG 59.708 44.000 0.00 0.00 41.75 4.18
3168 3222 5.065346 GCCTCTAACTTTTGCATAGGAACTC 59.935 44.000 0.00 0.00 41.75 3.01
3169 3223 4.944317 GCCTCTAACTTTTGCATAGGAACT 59.056 41.667 0.00 0.00 46.37 3.01
3170 3224 4.700213 TGCCTCTAACTTTTGCATAGGAAC 59.300 41.667 0.00 0.00 0.00 3.62
3171 3225 4.917385 TGCCTCTAACTTTTGCATAGGAA 58.083 39.130 0.00 0.00 0.00 3.36
3172 3226 4.568072 TGCCTCTAACTTTTGCATAGGA 57.432 40.909 0.00 0.00 0.00 2.94
3173 3227 4.458989 TGTTGCCTCTAACTTTTGCATAGG 59.541 41.667 0.00 0.00 0.00 2.57
3174 3228 5.182001 AGTGTTGCCTCTAACTTTTGCATAG 59.818 40.000 0.00 0.00 0.00 2.23
3175 3229 5.070001 AGTGTTGCCTCTAACTTTTGCATA 58.930 37.500 0.00 0.00 0.00 3.14
3176 3230 3.891366 AGTGTTGCCTCTAACTTTTGCAT 59.109 39.130 0.00 0.00 0.00 3.96
3177 3231 3.287222 AGTGTTGCCTCTAACTTTTGCA 58.713 40.909 0.00 0.00 0.00 4.08
3178 3232 3.990318 AGTGTTGCCTCTAACTTTTGC 57.010 42.857 0.00 0.00 0.00 3.68
3179 3233 5.048782 TGCATAGTGTTGCCTCTAACTTTTG 60.049 40.000 0.00 0.00 42.06 2.44
3180 3234 5.070001 TGCATAGTGTTGCCTCTAACTTTT 58.930 37.500 0.00 0.00 42.06 2.27
3181 3235 4.651778 TGCATAGTGTTGCCTCTAACTTT 58.348 39.130 0.00 0.00 42.06 2.66
3182 3236 4.020218 TCTGCATAGTGTTGCCTCTAACTT 60.020 41.667 0.00 0.00 42.06 2.66
3183 3237 3.515502 TCTGCATAGTGTTGCCTCTAACT 59.484 43.478 0.00 0.00 42.06 2.24
3184 3238 3.619038 GTCTGCATAGTGTTGCCTCTAAC 59.381 47.826 0.00 0.00 42.06 2.34
3185 3239 3.369471 GGTCTGCATAGTGTTGCCTCTAA 60.369 47.826 0.00 0.00 42.06 2.10
3186 3240 2.168521 GGTCTGCATAGTGTTGCCTCTA 59.831 50.000 0.00 0.00 42.06 2.43
3187 3241 1.065854 GGTCTGCATAGTGTTGCCTCT 60.066 52.381 0.00 0.00 42.06 3.69
3188 3242 1.373570 GGTCTGCATAGTGTTGCCTC 58.626 55.000 0.00 0.00 42.06 4.70
3189 3243 0.391661 CGGTCTGCATAGTGTTGCCT 60.392 55.000 0.00 0.00 42.06 4.75
3190 3244 1.369091 CCGGTCTGCATAGTGTTGCC 61.369 60.000 0.00 0.00 42.06 4.52
3191 3245 0.673644 ACCGGTCTGCATAGTGTTGC 60.674 55.000 0.00 0.00 43.07 4.17
3192 3246 1.359848 GACCGGTCTGCATAGTGTTG 58.640 55.000 27.64 0.00 0.00 3.33
3193 3247 0.249398 GGACCGGTCTGCATAGTGTT 59.751 55.000 32.52 0.00 0.00 3.32
3194 3248 0.614979 AGGACCGGTCTGCATAGTGT 60.615 55.000 32.52 5.05 0.00 3.55
3195 3249 0.103208 GAGGACCGGTCTGCATAGTG 59.897 60.000 32.52 0.00 0.00 2.74
3196 3250 0.324368 TGAGGACCGGTCTGCATAGT 60.324 55.000 32.52 9.87 0.00 2.12
3197 3251 0.387202 CTGAGGACCGGTCTGCATAG 59.613 60.000 32.52 19.23 0.00 2.23
3198 3252 0.324368 ACTGAGGACCGGTCTGCATA 60.324 55.000 32.52 14.45 0.00 3.14
3199 3253 1.610673 ACTGAGGACCGGTCTGCAT 60.611 57.895 32.52 16.96 0.00 3.96
3200 3254 2.203640 ACTGAGGACCGGTCTGCA 60.204 61.111 32.52 26.70 0.00 4.41
3201 3255 1.816863 TTCACTGAGGACCGGTCTGC 61.817 60.000 32.52 23.88 30.29 4.26
3202 3256 0.679505 TTTCACTGAGGACCGGTCTG 59.320 55.000 32.52 22.41 30.29 3.51
3203 3257 1.420430 TTTTCACTGAGGACCGGTCT 58.580 50.000 32.52 19.24 30.29 3.85
3204 3258 2.143925 CTTTTTCACTGAGGACCGGTC 58.856 52.381 27.04 27.04 30.29 4.79
3205 3259 1.489230 ACTTTTTCACTGAGGACCGGT 59.511 47.619 6.92 6.92 33.84 5.28
3206 3260 2.256117 ACTTTTTCACTGAGGACCGG 57.744 50.000 0.00 0.00 0.00 5.28
3207 3261 3.183775 CGTTACTTTTTCACTGAGGACCG 59.816 47.826 0.00 0.00 0.00 4.79
3208 3262 3.059120 GCGTTACTTTTTCACTGAGGACC 60.059 47.826 0.00 0.00 0.00 4.46
3209 3263 3.362693 CGCGTTACTTTTTCACTGAGGAC 60.363 47.826 0.00 0.00 0.00 3.85
3210 3264 2.798283 CGCGTTACTTTTTCACTGAGGA 59.202 45.455 0.00 0.00 0.00 3.71
3211 3265 2.798283 TCGCGTTACTTTTTCACTGAGG 59.202 45.455 5.77 0.00 0.00 3.86
3212 3266 3.120991 CCTCGCGTTACTTTTTCACTGAG 60.121 47.826 5.77 0.00 0.00 3.35
3213 3267 2.798283 CCTCGCGTTACTTTTTCACTGA 59.202 45.455 5.77 0.00 0.00 3.41
3214 3268 2.096417 CCCTCGCGTTACTTTTTCACTG 60.096 50.000 5.77 0.00 0.00 3.66
3215 3269 2.140717 CCCTCGCGTTACTTTTTCACT 58.859 47.619 5.77 0.00 0.00 3.41
3216 3270 2.589338 CCCTCGCGTTACTTTTTCAC 57.411 50.000 5.77 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.