Multiple sequence alignment - TraesCS2B01G307500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G307500 chr2B 100.000 6718 0 0 1 6718 440209046 440215763 0.000000e+00 12406.0
1 TraesCS2B01G307500 chr2B 94.097 288 14 2 94 378 17028845 17029132 1.030000e-117 435.0
2 TraesCS2B01G307500 chr2B 90.909 110 7 3 3001 3109 428384566 428384673 1.950000e-30 145.0
3 TraesCS2B01G307500 chr2B 96.970 33 1 0 5236 5268 568741140 568741172 1.000000e-03 56.5
4 TraesCS2B01G307500 chr2A 97.115 3224 81 10 3091 6309 501844841 501848057 0.000000e+00 5428.0
5 TraesCS2B01G307500 chr2A 95.509 2583 89 12 449 3018 501842239 501844807 0.000000e+00 4102.0
6 TraesCS2B01G307500 chr2A 90.299 134 11 1 6485 6616 501848278 501848411 2.490000e-39 174.0
7 TraesCS2B01G307500 chr2A 89.286 112 9 3 6503 6613 755738566 755738675 3.270000e-28 137.0
8 TraesCS2B01G307500 chr2A 95.556 45 2 0 6290 6334 501848067 501848111 9.350000e-09 73.1
9 TraesCS2B01G307500 chr2D 97.196 2817 56 10 3096 5910 371155579 371158374 0.000000e+00 4743.0
10 TraesCS2B01G307500 chr2D 96.959 2631 62 8 404 3016 371152952 371155582 0.000000e+00 4399.0
11 TraesCS2B01G307500 chr2D 92.807 431 23 4 5902 6327 371160450 371160877 9.570000e-173 617.0
12 TraesCS2B01G307500 chr2D 97.000 100 2 1 1 99 32527321 32527420 4.170000e-37 167.0
13 TraesCS2B01G307500 chr2D 96.970 33 1 0 5236 5268 184404522 184404490 1.000000e-03 56.5
14 TraesCS2B01G307500 chr3B 95.714 280 8 4 94 371 710386399 710386122 1.330000e-121 448.0
15 TraesCS2B01G307500 chr3B 94.118 289 16 1 98 385 792799277 792798989 8.000000e-119 438.0
16 TraesCS2B01G307500 chr3B 91.818 110 6 3 3001 3109 512457406 512457513 4.200000e-32 150.0
17 TraesCS2B01G307500 chr3B 93.069 101 5 2 1 100 48883516 48883615 5.430000e-31 147.0
18 TraesCS2B01G307500 chr3B 96.970 33 1 0 5236 5268 752687079 752687047 1.000000e-03 56.5
19 TraesCS2B01G307500 chr1B 95.374 281 12 1 98 377 275410064 275409784 4.780000e-121 446.0
20 TraesCS2B01G307500 chr1B 95.374 281 12 1 98 377 275498619 275498339 4.780000e-121 446.0
21 TraesCS2B01G307500 chr1B 96.739 92 3 0 3008 3099 343995933 343996024 3.240000e-33 154.0
22 TraesCS2B01G307500 chr1B 100.000 81 0 0 6504 6584 436929079 436928999 4.200000e-32 150.0
23 TraesCS2B01G307500 chr1B 95.652 92 3 1 6506 6597 63085076 63085166 5.430000e-31 147.0
24 TraesCS2B01G307500 chr7B 95.668 277 11 1 96 371 679697890 679698166 1.720000e-120 444.0
25 TraesCS2B01G307500 chr7B 93.537 294 16 3 96 387 164593514 164593222 1.030000e-117 435.0
26 TraesCS2B01G307500 chr7B 94.059 101 4 2 3013 3112 388716510 388716411 1.170000e-32 152.0
27 TraesCS2B01G307500 chr7A 95.357 280 12 1 96 374 6649511 6649232 1.720000e-120 444.0
28 TraesCS2B01G307500 chr5B 94.158 291 13 4 88 374 311780371 311780081 2.220000e-119 440.0
29 TraesCS2B01G307500 chr5B 78.497 479 86 14 3186 3660 506791810 506791345 1.420000e-76 298.0
30 TraesCS2B01G307500 chr5B 96.970 99 3 0 1 99 38171055 38170957 4.170000e-37 167.0
31 TraesCS2B01G307500 chr5B 96.774 93 1 2 6499 6589 477422936 477422844 3.240000e-33 154.0
32 TraesCS2B01G307500 chr5B 100.000 29 0 0 5236 5264 490949177 490949149 3.000000e-03 54.7
33 TraesCS2B01G307500 chr5D 78.706 479 85 14 3186 3660 420713700 420713235 3.040000e-78 303.0
34 TraesCS2B01G307500 chr5D 97.826 92 1 1 6499 6589 397027087 397026996 2.510000e-34 158.0
35 TraesCS2B01G307500 chr5D 91.818 110 7 2 3006 3113 57226057 57225948 1.170000e-32 152.0
36 TraesCS2B01G307500 chr5A 88.235 153 16 2 4497 4649 609244856 609245006 1.490000e-41 182.0
37 TraesCS2B01G307500 chr5A 96.703 91 3 0 6499 6589 502580776 502580686 1.170000e-32 152.0
38 TraesCS2B01G307500 chr5A 97.674 86 2 0 6499 6584 702637632 702637717 1.510000e-31 148.0
39 TraesCS2B01G307500 chr5A 90.741 108 10 0 2999 3106 398722110 398722217 1.950000e-30 145.0
40 TraesCS2B01G307500 chr4B 94.059 101 4 2 3013 3112 136939877 136939778 1.170000e-32 152.0
41 TraesCS2B01G307500 chr4B 95.652 92 3 1 6499 6590 612029859 612029769 5.430000e-31 147.0
42 TraesCS2B01G307500 chr4B 92.308 104 5 3 3007 3109 189189379 189189278 1.950000e-30 145.0
43 TraesCS2B01G307500 chr4B 97.619 84 2 0 6504 6587 664319819 664319902 1.950000e-30 145.0
44 TraesCS2B01G307500 chr4B 95.506 89 3 1 6501 6589 664205059 664205146 2.530000e-29 141.0
45 TraesCS2B01G307500 chr4B 95.455 88 3 1 6501 6588 664191405 664191319 9.080000e-29 139.0
46 TraesCS2B01G307500 chr4B 92.500 40 2 1 5237 5275 659691703 659691664 1.000000e-03 56.5
47 TraesCS2B01G307500 chr3D 94.059 101 5 1 3008 3108 12881652 12881751 1.170000e-32 152.0
48 TraesCS2B01G307500 chr4D 95.652 92 2 2 6497 6588 506899325 506899236 5.430000e-31 147.0
49 TraesCS2B01G307500 chr4D 95.604 91 3 1 6499 6589 482238183 482238094 1.950000e-30 145.0
50 TraesCS2B01G307500 chr4D 97.531 81 2 0 6499 6579 506979746 506979826 9.080000e-29 139.0
51 TraesCS2B01G307500 chr4D 97.500 80 2 0 6499 6578 506366738 506366817 3.270000e-28 137.0
52 TraesCS2B01G307500 chr4D 93.478 92 2 3 6503 6590 506930340 506930249 4.230000e-27 134.0
53 TraesCS2B01G307500 chr1D 97.674 86 0 2 6501 6584 324621847 324621762 5.430000e-31 147.0
54 TraesCS2B01G307500 chr1D 96.471 85 2 1 6506 6590 43197185 43197268 9.080000e-29 139.0
55 TraesCS2B01G307500 chr1D 94.444 90 1 2 6504 6589 412087681 412087592 1.180000e-27 135.0
56 TraesCS2B01G307500 chr1D 96.296 81 3 0 6499 6579 75541376 75541296 4.230000e-27 134.0
57 TraesCS2B01G307500 chr6B 93.000 100 5 2 6497 6596 611464818 611464721 1.950000e-30 145.0
58 TraesCS2B01G307500 chr6D 91.262 103 8 1 6497 6599 407474672 407474571 9.080000e-29 139.0
59 TraesCS2B01G307500 chr6D 96.970 33 1 0 5236 5268 3442573 3442605 1.000000e-03 56.5
60 TraesCS2B01G307500 chr1A 95.506 89 1 2 6504 6589 508639816 508639728 9.080000e-29 139.0
61 TraesCS2B01G307500 chrUn 94.186 86 2 2 6505 6587 5443497 5443412 1.970000e-25 128.0
62 TraesCS2B01G307500 chr7D 97.059 34 1 0 5236 5269 619998660 619998627 2.620000e-04 58.4
63 TraesCS2B01G307500 chr3A 96.970 33 1 0 5236 5268 721254708 721254740 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G307500 chr2B 440209046 440215763 6717 False 12406.000 12406 100.00000 1 6718 1 chr2B.!!$F3 6717
1 TraesCS2B01G307500 chr2A 501842239 501848411 6172 False 2444.275 5428 94.61975 449 6616 4 chr2A.!!$F2 6167
2 TraesCS2B01G307500 chr2D 371152952 371160877 7925 False 3253.000 4743 95.65400 404 6327 3 chr2D.!!$F2 5923

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
83 84 0.106819 GATTCACCCCAGAGCTGCAT 60.107 55.0 1.02 0.0 0.00 3.96 F
85 86 0.112995 TTCACCCCAGAGCTGCATTT 59.887 50.0 1.02 0.0 0.00 2.32 F
88 89 0.112995 ACCCCAGAGCTGCATTTTGA 59.887 50.0 1.02 0.0 0.00 2.69 F
89 90 0.815734 CCCCAGAGCTGCATTTTGAG 59.184 55.0 1.02 0.0 0.00 3.02 F
91 92 0.815734 CCAGAGCTGCATTTTGAGGG 59.184 55.0 1.02 0.0 0.00 4.30 F
96 97 0.893447 GCTGCATTTTGAGGGAGCTT 59.107 50.0 0.00 0.0 44.01 3.74 F
379 380 1.107114 ACGACCAGCCTCAGTATCTG 58.893 55.0 0.00 0.0 0.00 2.90 F
2557 2581 0.111253 CTGGTGCAAAAGAGAGGGGT 59.889 55.0 0.00 0.0 0.00 4.95 F
3842 3912 0.037326 TAGCAAGACAAGCCCGACAG 60.037 55.0 0.00 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1518 1537 1.303898 TGCACCCCATATTCCTGGAA 58.696 50.000 12.26 12.26 38.69 3.53 R
1753 1773 4.282068 CCGTTTTGATGACAGTTCAACAG 58.718 43.478 0.00 0.00 36.05 3.16 R
1894 1918 6.776603 GTGGGAACTACTCCTAAGCTAGAATA 59.223 42.308 0.00 0.00 44.68 1.75 R
2431 2455 3.796178 GCGAGCAACTTTTTGACATCAAA 59.204 39.130 2.89 2.89 43.36 2.69 R
2494 2518 9.139734 TCTAGTGACAATATACGTTTTCCCTAT 57.860 33.333 0.00 0.00 0.00 2.57 R
2557 2581 2.109128 TGTAACCCTGGCTTCCAATTCA 59.891 45.455 0.00 0.00 30.80 2.57 R
2707 2733 5.819059 AGAGTATGAACCTCGTCGATAAAC 58.181 41.667 0.00 0.00 34.08 2.01 R
4010 4080 0.911525 ACTGCTGGACTGGTATGCCT 60.912 55.000 0.16 0.00 35.27 4.75 R
6180 8339 0.318120 CACAAAATTTGCCCCGAGCT 59.682 50.000 5.52 0.00 44.23 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.512978 CAAGGCGGTTCAAAATGGG 57.487 52.632 0.00 0.00 0.00 4.00
19 20 0.678950 CAAGGCGGTTCAAAATGGGT 59.321 50.000 0.00 0.00 0.00 4.51
20 21 0.966179 AAGGCGGTTCAAAATGGGTC 59.034 50.000 0.00 0.00 0.00 4.46
21 22 0.178975 AGGCGGTTCAAAATGGGTCA 60.179 50.000 0.00 0.00 0.00 4.02
22 23 0.676736 GGCGGTTCAAAATGGGTCAA 59.323 50.000 0.00 0.00 0.00 3.18
23 24 1.604438 GGCGGTTCAAAATGGGTCAAC 60.604 52.381 0.00 0.00 0.00 3.18
24 25 1.067821 GCGGTTCAAAATGGGTCAACA 59.932 47.619 0.00 0.00 0.00 3.33
25 26 2.288763 GCGGTTCAAAATGGGTCAACAT 60.289 45.455 0.00 0.00 0.00 2.71
26 27 3.057174 GCGGTTCAAAATGGGTCAACATA 60.057 43.478 0.00 0.00 0.00 2.29
27 28 4.732784 CGGTTCAAAATGGGTCAACATAG 58.267 43.478 0.00 0.00 0.00 2.23
28 29 4.380444 CGGTTCAAAATGGGTCAACATAGG 60.380 45.833 0.00 0.00 0.00 2.57
29 30 4.494484 GTTCAAAATGGGTCAACATAGGC 58.506 43.478 0.00 0.00 0.00 3.93
30 31 4.046286 TCAAAATGGGTCAACATAGGCT 57.954 40.909 0.00 0.00 0.00 4.58
31 32 3.763360 TCAAAATGGGTCAACATAGGCTG 59.237 43.478 0.00 0.00 0.00 4.85
32 33 3.737559 AAATGGGTCAACATAGGCTGA 57.262 42.857 0.00 0.00 0.00 4.26
33 34 2.717639 ATGGGTCAACATAGGCTGAC 57.282 50.000 2.35 2.35 41.05 3.51
34 35 1.357137 TGGGTCAACATAGGCTGACA 58.643 50.000 12.47 0.00 43.11 3.58
35 36 1.702401 TGGGTCAACATAGGCTGACAA 59.298 47.619 12.47 0.00 43.11 3.18
36 37 2.290260 TGGGTCAACATAGGCTGACAAG 60.290 50.000 12.47 0.00 43.11 3.16
37 38 2.359900 GGTCAACATAGGCTGACAAGG 58.640 52.381 12.47 0.00 43.11 3.61
38 39 2.290323 GGTCAACATAGGCTGACAAGGT 60.290 50.000 12.47 0.00 43.11 3.50
39 40 2.744202 GTCAACATAGGCTGACAAGGTG 59.256 50.000 6.07 0.00 41.35 4.00
40 41 2.086869 CAACATAGGCTGACAAGGTGG 58.913 52.381 0.00 0.00 0.00 4.61
41 42 1.656587 ACATAGGCTGACAAGGTGGA 58.343 50.000 0.00 0.00 0.00 4.02
42 43 1.279271 ACATAGGCTGACAAGGTGGAC 59.721 52.381 0.00 0.00 0.00 4.02
43 44 0.912486 ATAGGCTGACAAGGTGGACC 59.088 55.000 0.00 0.00 0.00 4.46
44 45 1.198759 TAGGCTGACAAGGTGGACCC 61.199 60.000 0.00 0.00 36.42 4.46
45 46 2.034221 GCTGACAAGGTGGACCCC 59.966 66.667 0.00 0.00 36.42 4.95
46 47 2.829384 GCTGACAAGGTGGACCCCA 61.829 63.158 2.29 0.00 36.42 4.96
56 57 4.717313 GGACCCCACGCACCCTTC 62.717 72.222 0.00 0.00 0.00 3.46
57 58 3.948719 GACCCCACGCACCCTTCA 61.949 66.667 0.00 0.00 0.00 3.02
58 59 4.265056 ACCCCACGCACCCTTCAC 62.265 66.667 0.00 0.00 0.00 3.18
62 63 4.988598 CACGCACCCTTCACGCCT 62.989 66.667 0.00 0.00 0.00 5.52
63 64 4.681978 ACGCACCCTTCACGCCTC 62.682 66.667 0.00 0.00 0.00 4.70
65 66 4.373116 GCACCCTTCACGCCTCGA 62.373 66.667 0.00 0.00 0.00 4.04
66 67 2.579201 CACCCTTCACGCCTCGAT 59.421 61.111 0.00 0.00 0.00 3.59
67 68 1.079127 CACCCTTCACGCCTCGATT 60.079 57.895 0.00 0.00 0.00 3.34
68 69 1.084370 CACCCTTCACGCCTCGATTC 61.084 60.000 0.00 0.00 0.00 2.52
69 70 1.218047 CCCTTCACGCCTCGATTCA 59.782 57.895 0.00 0.00 0.00 2.57
70 71 1.084370 CCCTTCACGCCTCGATTCAC 61.084 60.000 0.00 0.00 0.00 3.18
71 72 1.084370 CCTTCACGCCTCGATTCACC 61.084 60.000 0.00 0.00 0.00 4.02
72 73 1.079405 TTCACGCCTCGATTCACCC 60.079 57.895 0.00 0.00 0.00 4.61
73 74 2.511600 CACGCCTCGATTCACCCC 60.512 66.667 0.00 0.00 0.00 4.95
74 75 3.000819 ACGCCTCGATTCACCCCA 61.001 61.111 0.00 0.00 0.00 4.96
75 76 2.202932 CGCCTCGATTCACCCCAG 60.203 66.667 0.00 0.00 0.00 4.45
76 77 2.721167 CGCCTCGATTCACCCCAGA 61.721 63.158 0.00 0.00 0.00 3.86
77 78 1.144936 GCCTCGATTCACCCCAGAG 59.855 63.158 0.00 0.00 0.00 3.35
78 79 1.144936 CCTCGATTCACCCCAGAGC 59.855 63.158 0.00 0.00 0.00 4.09
79 80 1.333636 CCTCGATTCACCCCAGAGCT 61.334 60.000 0.00 0.00 0.00 4.09
80 81 0.179089 CTCGATTCACCCCAGAGCTG 60.179 60.000 0.00 0.00 0.00 4.24
81 82 1.817099 CGATTCACCCCAGAGCTGC 60.817 63.158 0.00 0.00 0.00 5.25
82 83 1.300963 GATTCACCCCAGAGCTGCA 59.699 57.895 1.02 0.00 0.00 4.41
83 84 0.106819 GATTCACCCCAGAGCTGCAT 60.107 55.000 1.02 0.00 0.00 3.96
84 85 0.333993 ATTCACCCCAGAGCTGCATT 59.666 50.000 1.02 0.00 0.00 3.56
85 86 0.112995 TTCACCCCAGAGCTGCATTT 59.887 50.000 1.02 0.00 0.00 2.32
86 87 0.112995 TCACCCCAGAGCTGCATTTT 59.887 50.000 1.02 0.00 0.00 1.82
87 88 0.245539 CACCCCAGAGCTGCATTTTG 59.754 55.000 1.02 0.00 0.00 2.44
88 89 0.112995 ACCCCAGAGCTGCATTTTGA 59.887 50.000 1.02 0.00 0.00 2.69
89 90 0.815734 CCCCAGAGCTGCATTTTGAG 59.184 55.000 1.02 0.00 0.00 3.02
90 91 0.815734 CCCAGAGCTGCATTTTGAGG 59.184 55.000 1.02 0.00 0.00 3.86
91 92 0.815734 CCAGAGCTGCATTTTGAGGG 59.184 55.000 1.02 0.00 0.00 4.30
92 93 1.615116 CCAGAGCTGCATTTTGAGGGA 60.615 52.381 1.02 0.00 0.00 4.20
93 94 1.743958 CAGAGCTGCATTTTGAGGGAG 59.256 52.381 1.02 0.00 0.00 4.30
95 96 2.576298 GCTGCATTTTGAGGGAGCT 58.424 52.632 0.00 0.00 44.01 4.09
96 97 0.893447 GCTGCATTTTGAGGGAGCTT 59.107 50.000 0.00 0.00 44.01 3.74
97 98 2.094675 GCTGCATTTTGAGGGAGCTTA 58.905 47.619 0.00 0.00 44.01 3.09
98 99 2.098770 GCTGCATTTTGAGGGAGCTTAG 59.901 50.000 0.00 0.00 44.01 2.18
99 100 2.686915 CTGCATTTTGAGGGAGCTTAGG 59.313 50.000 0.00 0.00 0.00 2.69
100 101 1.406898 GCATTTTGAGGGAGCTTAGGC 59.593 52.381 0.00 0.00 39.06 3.93
113 114 2.024414 GCTTAGGCTGGTTGTAATGGG 58.976 52.381 0.00 0.00 35.22 4.00
114 115 2.356741 GCTTAGGCTGGTTGTAATGGGA 60.357 50.000 0.00 0.00 35.22 4.37
115 116 3.876156 GCTTAGGCTGGTTGTAATGGGAA 60.876 47.826 0.00 0.00 35.22 3.97
116 117 2.514458 AGGCTGGTTGTAATGGGAAG 57.486 50.000 0.00 0.00 0.00 3.46
117 118 1.710809 AGGCTGGTTGTAATGGGAAGT 59.289 47.619 0.00 0.00 0.00 3.01
118 119 2.916934 AGGCTGGTTGTAATGGGAAGTA 59.083 45.455 0.00 0.00 0.00 2.24
119 120 3.527665 AGGCTGGTTGTAATGGGAAGTAT 59.472 43.478 0.00 0.00 0.00 2.12
120 121 3.883489 GGCTGGTTGTAATGGGAAGTATC 59.117 47.826 0.00 0.00 0.00 2.24
121 122 4.523083 GCTGGTTGTAATGGGAAGTATCA 58.477 43.478 0.00 0.00 0.00 2.15
122 123 5.133221 GCTGGTTGTAATGGGAAGTATCAT 58.867 41.667 0.00 0.00 0.00 2.45
123 124 6.296026 GCTGGTTGTAATGGGAAGTATCATA 58.704 40.000 0.00 0.00 0.00 2.15
124 125 6.942576 GCTGGTTGTAATGGGAAGTATCATAT 59.057 38.462 0.00 0.00 0.00 1.78
125 126 8.100791 GCTGGTTGTAATGGGAAGTATCATATA 58.899 37.037 0.00 0.00 0.00 0.86
126 127 9.436957 CTGGTTGTAATGGGAAGTATCATATAC 57.563 37.037 0.00 0.00 0.00 1.47
127 128 9.166222 TGGTTGTAATGGGAAGTATCATATACT 57.834 33.333 0.00 0.00 0.00 2.12
167 168 9.696572 TGATACTAATGTATGATACTACCTCCC 57.303 37.037 4.03 0.00 39.29 4.30
168 169 9.924010 GATACTAATGTATGATACTACCTCCCT 57.076 37.037 4.03 0.00 39.29 4.20
173 174 6.852420 TGTATGATACTACCTCCCTAATGC 57.148 41.667 4.03 0.00 0.00 3.56
174 175 6.319715 TGTATGATACTACCTCCCTAATGCA 58.680 40.000 4.03 0.00 0.00 3.96
175 176 6.959954 TGTATGATACTACCTCCCTAATGCAT 59.040 38.462 4.03 0.00 0.00 3.96
176 177 8.119891 TGTATGATACTACCTCCCTAATGCATA 58.880 37.037 0.00 0.00 0.00 3.14
177 178 7.667575 ATGATACTACCTCCCTAATGCATAG 57.332 40.000 0.00 0.00 0.00 2.23
178 179 6.562228 TGATACTACCTCCCTAATGCATAGT 58.438 40.000 0.00 0.00 0.00 2.12
179 180 7.705700 TGATACTACCTCCCTAATGCATAGTA 58.294 38.462 0.00 0.81 0.00 1.82
180 181 8.344546 TGATACTACCTCCCTAATGCATAGTAT 58.655 37.037 11.08 11.08 37.18 2.12
181 182 8.770010 ATACTACCTCCCTAATGCATAGTATC 57.230 38.462 0.00 0.00 31.76 2.24
182 183 6.562228 ACTACCTCCCTAATGCATAGTATCA 58.438 40.000 0.00 0.00 0.00 2.15
183 184 7.192628 ACTACCTCCCTAATGCATAGTATCAT 58.807 38.462 0.00 0.00 0.00 2.45
184 185 8.344546 ACTACCTCCCTAATGCATAGTATCATA 58.655 37.037 0.00 0.00 0.00 2.15
185 186 9.373450 CTACCTCCCTAATGCATAGTATCATAT 57.627 37.037 0.00 0.00 0.00 1.78
187 188 9.373450 ACCTCCCTAATGCATAGTATCATATAG 57.627 37.037 0.00 0.00 0.00 1.31
188 189 9.373450 CCTCCCTAATGCATAGTATCATATAGT 57.627 37.037 0.00 0.00 0.00 2.12
236 237 3.410508 TCATGCATGACACAAAGTAGCA 58.589 40.909 25.42 0.00 37.13 3.49
237 238 4.011698 TCATGCATGACACAAAGTAGCAT 58.988 39.130 25.42 0.00 41.24 3.79
238 239 5.184711 TCATGCATGACACAAAGTAGCATA 58.815 37.500 25.42 0.00 39.67 3.14
239 240 5.647225 TCATGCATGACACAAAGTAGCATAA 59.353 36.000 25.42 0.00 39.67 1.90
240 241 5.295431 TGCATGACACAAAGTAGCATAAC 57.705 39.130 0.00 0.00 30.65 1.89
241 242 4.759183 TGCATGACACAAAGTAGCATAACA 59.241 37.500 0.00 0.00 30.65 2.41
242 243 5.415389 TGCATGACACAAAGTAGCATAACAT 59.585 36.000 0.00 0.00 30.65 2.71
243 244 6.072008 TGCATGACACAAAGTAGCATAACATT 60.072 34.615 0.00 0.00 30.65 2.71
244 245 6.808212 GCATGACACAAAGTAGCATAACATTT 59.192 34.615 0.00 0.00 0.00 2.32
245 246 7.967854 GCATGACACAAAGTAGCATAACATTTA 59.032 33.333 0.00 0.00 0.00 1.40
246 247 9.838975 CATGACACAAAGTAGCATAACATTTAA 57.161 29.630 0.00 0.00 0.00 1.52
283 284 7.043961 TCATGATATGATATTACGCCCTCTC 57.956 40.000 0.00 0.00 33.59 3.20
284 285 6.836007 TCATGATATGATATTACGCCCTCTCT 59.164 38.462 0.00 0.00 33.59 3.10
285 286 7.343057 TCATGATATGATATTACGCCCTCTCTT 59.657 37.037 0.00 0.00 33.59 2.85
286 287 7.482169 TGATATGATATTACGCCCTCTCTTT 57.518 36.000 0.00 0.00 0.00 2.52
287 288 7.548097 TGATATGATATTACGCCCTCTCTTTC 58.452 38.462 0.00 0.00 0.00 2.62
288 289 7.397476 TGATATGATATTACGCCCTCTCTTTCT 59.603 37.037 0.00 0.00 0.00 2.52
289 290 5.871396 TGATATTACGCCCTCTCTTTCTT 57.129 39.130 0.00 0.00 0.00 2.52
290 291 5.844004 TGATATTACGCCCTCTCTTTCTTC 58.156 41.667 0.00 0.00 0.00 2.87
291 292 5.362717 TGATATTACGCCCTCTCTTTCTTCA 59.637 40.000 0.00 0.00 0.00 3.02
292 293 4.762289 ATTACGCCCTCTCTTTCTTCAT 57.238 40.909 0.00 0.00 0.00 2.57
293 294 4.553330 TTACGCCCTCTCTTTCTTCATT 57.447 40.909 0.00 0.00 0.00 2.57
294 295 3.425162 ACGCCCTCTCTTTCTTCATTT 57.575 42.857 0.00 0.00 0.00 2.32
295 296 4.553330 ACGCCCTCTCTTTCTTCATTTA 57.447 40.909 0.00 0.00 0.00 1.40
296 297 4.906618 ACGCCCTCTCTTTCTTCATTTAA 58.093 39.130 0.00 0.00 0.00 1.52
297 298 5.501156 ACGCCCTCTCTTTCTTCATTTAAT 58.499 37.500 0.00 0.00 0.00 1.40
298 299 5.355350 ACGCCCTCTCTTTCTTCATTTAATG 59.645 40.000 0.00 0.00 0.00 1.90
299 300 5.586339 GCCCTCTCTTTCTTCATTTAATGC 58.414 41.667 0.00 0.00 0.00 3.56
300 301 5.359292 GCCCTCTCTTTCTTCATTTAATGCT 59.641 40.000 0.00 0.00 0.00 3.79
301 302 6.543831 GCCCTCTCTTTCTTCATTTAATGCTA 59.456 38.462 0.00 0.00 0.00 3.49
302 303 7.230309 GCCCTCTCTTTCTTCATTTAATGCTAT 59.770 37.037 0.00 0.00 0.00 2.97
303 304 8.566260 CCCTCTCTTTCTTCATTTAATGCTATG 58.434 37.037 0.00 0.00 0.00 2.23
304 305 9.334947 CCTCTCTTTCTTCATTTAATGCTATGA 57.665 33.333 0.00 0.00 0.00 2.15
306 307 9.671279 TCTCTTTCTTCATTTAATGCTATGACA 57.329 29.630 0.00 0.00 30.89 3.58
307 308 9.713740 CTCTTTCTTCATTTAATGCTATGACAC 57.286 33.333 0.00 0.00 30.89 3.67
308 309 8.677300 TCTTTCTTCATTTAATGCTATGACACC 58.323 33.333 0.00 0.00 30.89 4.16
309 310 8.579850 TTTCTTCATTTAATGCTATGACACCT 57.420 30.769 0.00 0.00 30.89 4.00
310 311 7.792374 TCTTCATTTAATGCTATGACACCTC 57.208 36.000 0.00 0.00 30.89 3.85
311 312 7.337938 TCTTCATTTAATGCTATGACACCTCA 58.662 34.615 0.00 0.00 30.89 3.86
312 313 7.994911 TCTTCATTTAATGCTATGACACCTCAT 59.005 33.333 0.00 0.00 40.47 2.90
313 314 7.734924 TCATTTAATGCTATGACACCTCATC 57.265 36.000 0.00 0.00 38.21 2.92
314 315 7.281841 TCATTTAATGCTATGACACCTCATCA 58.718 34.615 0.00 0.00 38.21 3.07
315 316 7.774625 TCATTTAATGCTATGACACCTCATCAA 59.225 33.333 0.00 0.00 38.21 2.57
316 317 7.936496 TTTAATGCTATGACACCTCATCAAA 57.064 32.000 0.00 0.00 38.21 2.69
317 318 7.936496 TTAATGCTATGACACCTCATCAAAA 57.064 32.000 0.00 0.00 38.21 2.44
318 319 8.523915 TTAATGCTATGACACCTCATCAAAAT 57.476 30.769 0.00 0.00 38.21 1.82
319 320 7.414222 AATGCTATGACACCTCATCAAAATT 57.586 32.000 0.00 0.00 38.21 1.82
320 321 6.198650 TGCTATGACACCTCATCAAAATTG 57.801 37.500 0.00 0.00 38.21 2.32
321 322 5.039333 GCTATGACACCTCATCAAAATTGC 58.961 41.667 0.00 0.00 38.21 3.56
322 323 3.940209 TGACACCTCATCAAAATTGCC 57.060 42.857 0.00 0.00 0.00 4.52
323 324 3.499338 TGACACCTCATCAAAATTGCCT 58.501 40.909 0.00 0.00 0.00 4.75
324 325 4.661222 TGACACCTCATCAAAATTGCCTA 58.339 39.130 0.00 0.00 0.00 3.93
325 326 4.701651 TGACACCTCATCAAAATTGCCTAG 59.298 41.667 0.00 0.00 0.00 3.02
326 327 4.666512 ACACCTCATCAAAATTGCCTAGT 58.333 39.130 0.00 0.00 0.00 2.57
327 328 5.079643 ACACCTCATCAAAATTGCCTAGTT 58.920 37.500 0.00 0.00 0.00 2.24
328 329 5.047802 ACACCTCATCAAAATTGCCTAGTTG 60.048 40.000 0.00 0.00 0.00 3.16
329 330 5.183713 CACCTCATCAAAATTGCCTAGTTGA 59.816 40.000 0.00 0.00 34.68 3.18
330 331 5.183904 ACCTCATCAAAATTGCCTAGTTGAC 59.816 40.000 0.00 0.00 33.09 3.18
331 332 5.183713 CCTCATCAAAATTGCCTAGTTGACA 59.816 40.000 0.00 0.00 33.09 3.58
332 333 6.127535 CCTCATCAAAATTGCCTAGTTGACAT 60.128 38.462 0.00 0.00 33.09 3.06
333 334 6.623486 TCATCAAAATTGCCTAGTTGACATG 58.377 36.000 0.00 0.00 33.09 3.21
334 335 4.808558 TCAAAATTGCCTAGTTGACATGC 58.191 39.130 0.00 0.00 0.00 4.06
335 336 4.280425 TCAAAATTGCCTAGTTGACATGCA 59.720 37.500 0.00 0.00 0.00 3.96
336 337 5.047164 TCAAAATTGCCTAGTTGACATGCAT 60.047 36.000 0.00 0.00 0.00 3.96
337 338 4.380841 AATTGCCTAGTTGACATGCATG 57.619 40.909 25.09 25.09 0.00 4.06
338 339 2.495155 TGCCTAGTTGACATGCATGT 57.505 45.000 31.82 31.82 45.16 3.21
339 340 3.625649 TGCCTAGTTGACATGCATGTA 57.374 42.857 31.45 15.27 41.95 2.29
340 341 3.270027 TGCCTAGTTGACATGCATGTAC 58.730 45.455 31.45 25.33 41.95 2.90
341 342 3.055167 TGCCTAGTTGACATGCATGTACT 60.055 43.478 31.45 30.01 41.95 2.73
342 343 4.161377 TGCCTAGTTGACATGCATGTACTA 59.839 41.667 31.45 29.58 41.95 1.82
343 344 4.747108 GCCTAGTTGACATGCATGTACTAG 59.253 45.833 36.55 36.55 43.25 2.57
344 345 4.747108 CCTAGTTGACATGCATGTACTAGC 59.253 45.833 37.31 26.80 42.79 3.42
345 346 4.478206 AGTTGACATGCATGTACTAGCT 57.522 40.909 31.45 22.54 41.95 3.32
346 347 5.598416 AGTTGACATGCATGTACTAGCTA 57.402 39.130 31.45 13.19 41.95 3.32
347 348 6.166984 AGTTGACATGCATGTACTAGCTAT 57.833 37.500 31.45 6.33 41.95 2.97
348 349 5.987953 AGTTGACATGCATGTACTAGCTATG 59.012 40.000 31.45 2.91 41.95 2.23
349 350 5.789643 TGACATGCATGTACTAGCTATGA 57.210 39.130 31.45 0.00 41.95 2.15
350 351 6.350629 TGACATGCATGTACTAGCTATGAT 57.649 37.500 31.45 4.73 41.95 2.45
351 352 7.466746 TGACATGCATGTACTAGCTATGATA 57.533 36.000 31.45 0.00 41.95 2.15
352 353 7.315890 TGACATGCATGTACTAGCTATGATAC 58.684 38.462 31.45 14.31 41.95 2.24
353 354 7.177392 TGACATGCATGTACTAGCTATGATACT 59.823 37.037 31.45 3.14 41.95 2.12
354 355 8.581253 ACATGCATGTACTAGCTATGATACTA 57.419 34.615 30.50 0.00 39.68 1.82
355 356 9.194972 ACATGCATGTACTAGCTATGATACTAT 57.805 33.333 30.50 0.00 39.68 2.12
356 357 9.676195 CATGCATGTACTAGCTATGATACTATC 57.324 37.037 18.91 0.00 0.00 2.08
357 358 8.807948 TGCATGTACTAGCTATGATACTATCA 57.192 34.615 10.62 1.10 44.55 2.15
369 370 5.386958 TGATACTATCATTACGACCAGCC 57.613 43.478 0.00 0.00 33.59 4.85
370 371 5.077564 TGATACTATCATTACGACCAGCCT 58.922 41.667 0.00 0.00 33.59 4.58
371 372 5.183331 TGATACTATCATTACGACCAGCCTC 59.817 44.000 0.00 0.00 33.59 4.70
372 373 3.296854 ACTATCATTACGACCAGCCTCA 58.703 45.455 0.00 0.00 0.00 3.86
373 374 2.898729 ATCATTACGACCAGCCTCAG 57.101 50.000 0.00 0.00 0.00 3.35
374 375 1.557099 TCATTACGACCAGCCTCAGT 58.443 50.000 0.00 0.00 0.00 3.41
375 376 2.730382 TCATTACGACCAGCCTCAGTA 58.270 47.619 0.00 0.00 0.00 2.74
376 377 3.296854 TCATTACGACCAGCCTCAGTAT 58.703 45.455 0.00 0.00 0.00 2.12
377 378 3.318275 TCATTACGACCAGCCTCAGTATC 59.682 47.826 0.00 0.00 0.00 2.24
378 379 2.730934 TACGACCAGCCTCAGTATCT 57.269 50.000 0.00 0.00 0.00 1.98
379 380 1.107114 ACGACCAGCCTCAGTATCTG 58.893 55.000 0.00 0.00 0.00 2.90
380 381 1.107114 CGACCAGCCTCAGTATCTGT 58.893 55.000 0.00 0.00 32.61 3.41
381 382 2.298610 CGACCAGCCTCAGTATCTGTA 58.701 52.381 0.00 0.00 32.61 2.74
382 383 2.033550 CGACCAGCCTCAGTATCTGTAC 59.966 54.545 0.00 0.00 32.61 2.90
383 384 2.362717 GACCAGCCTCAGTATCTGTACC 59.637 54.545 0.00 0.00 32.61 3.34
384 385 2.023888 ACCAGCCTCAGTATCTGTACCT 60.024 50.000 0.00 0.00 32.61 3.08
385 386 3.204606 ACCAGCCTCAGTATCTGTACCTA 59.795 47.826 0.00 0.00 32.61 3.08
386 387 4.140900 ACCAGCCTCAGTATCTGTACCTAT 60.141 45.833 0.00 0.00 32.61 2.57
387 388 4.461081 CCAGCCTCAGTATCTGTACCTATC 59.539 50.000 0.00 0.00 32.61 2.08
388 389 4.461081 CAGCCTCAGTATCTGTACCTATCC 59.539 50.000 0.00 0.00 32.61 2.59
389 390 3.764972 GCCTCAGTATCTGTACCTATCCC 59.235 52.174 0.00 0.00 32.61 3.85
390 391 4.509482 GCCTCAGTATCTGTACCTATCCCT 60.509 50.000 0.00 0.00 32.61 4.20
391 392 5.281089 GCCTCAGTATCTGTACCTATCCCTA 60.281 48.000 0.00 0.00 32.61 3.53
392 393 6.581473 GCCTCAGTATCTGTACCTATCCCTAT 60.581 46.154 0.00 0.00 32.61 2.57
393 394 6.831353 CCTCAGTATCTGTACCTATCCCTATG 59.169 46.154 0.00 0.00 32.61 2.23
394 395 7.311992 CCTCAGTATCTGTACCTATCCCTATGA 60.312 44.444 0.00 0.00 32.61 2.15
395 396 7.403671 TCAGTATCTGTACCTATCCCTATGAC 58.596 42.308 0.00 0.00 32.61 3.06
396 397 6.603997 CAGTATCTGTACCTATCCCTATGACC 59.396 46.154 0.00 0.00 0.00 4.02
397 398 5.616975 ATCTGTACCTATCCCTATGACCA 57.383 43.478 0.00 0.00 0.00 4.02
398 399 5.616975 TCTGTACCTATCCCTATGACCAT 57.383 43.478 0.00 0.00 0.00 3.55
399 400 5.977533 TCTGTACCTATCCCTATGACCATT 58.022 41.667 0.00 0.00 0.00 3.16
400 401 5.780282 TCTGTACCTATCCCTATGACCATTG 59.220 44.000 0.00 0.00 0.00 2.82
401 402 5.722290 TGTACCTATCCCTATGACCATTGA 58.278 41.667 0.00 0.00 0.00 2.57
402 403 6.331032 TGTACCTATCCCTATGACCATTGAT 58.669 40.000 0.00 0.00 0.00 2.57
403 404 7.483881 TGTACCTATCCCTATGACCATTGATA 58.516 38.462 0.00 0.00 0.00 2.15
404 405 7.959152 TGTACCTATCCCTATGACCATTGATAA 59.041 37.037 0.00 0.00 0.00 1.75
405 406 7.259088 ACCTATCCCTATGACCATTGATAAC 57.741 40.000 0.00 0.00 0.00 1.89
421 422 7.597369 CCATTGATAACGTTACATATTCTCGGA 59.403 37.037 10.81 0.00 0.00 4.55
462 463 1.126846 CTTCTCCGCATGAAACACGTC 59.873 52.381 0.00 0.00 0.00 4.34
552 553 4.368808 CGACGCAAACCTGTGCCG 62.369 66.667 0.00 0.00 41.73 5.69
966 979 4.150454 AGAGGCGGAGGAGGAGGG 62.150 72.222 0.00 0.00 0.00 4.30
1347 1366 4.069232 CTGGGCCTCGTCGCAGAA 62.069 66.667 4.53 0.00 46.22 3.02
1635 1654 2.887152 GTTGGTGCTGATGTTCTCCTTT 59.113 45.455 0.00 0.00 0.00 3.11
1785 1809 3.428534 GTCATCAAAACGGGAAATGCAAC 59.571 43.478 0.00 0.00 0.00 4.17
2431 2455 6.354130 ACCAATTATAGATAAACAGCCACGT 58.646 36.000 0.00 0.00 0.00 4.49
2474 2498 7.275123 GCTCGCAAACAGTAGTTAATACTTACT 59.725 37.037 0.00 0.00 42.30 2.24
2557 2581 0.111253 CTGGTGCAAAAGAGAGGGGT 59.889 55.000 0.00 0.00 0.00 4.95
2657 2681 5.401376 GGAACACTTAAACATTTCTTTCCGC 59.599 40.000 0.00 0.00 0.00 5.54
2705 2731 9.104965 CCAAATTTCATGCAGATGATGTTATTT 57.895 29.630 0.00 0.00 38.43 1.40
2913 2939 5.817296 TGCACATATTCCTGATGTTGTACTC 59.183 40.000 0.00 0.00 35.31 2.59
2935 2961 4.161565 TCTGTAGTTTGTCACTTGAGTGGT 59.838 41.667 10.97 0.00 45.65 4.16
3016 3086 4.752146 ACCGTTTCCATGCTACTAAGTAC 58.248 43.478 0.00 0.00 0.00 2.73
3017 3087 4.465305 ACCGTTTCCATGCTACTAAGTACT 59.535 41.667 0.00 0.00 0.00 2.73
3018 3088 5.041940 CCGTTTCCATGCTACTAAGTACTC 58.958 45.833 0.00 0.00 0.00 2.59
3019 3089 5.041940 CGTTTCCATGCTACTAAGTACTCC 58.958 45.833 0.00 0.00 0.00 3.85
3020 3090 5.393787 CGTTTCCATGCTACTAAGTACTCCA 60.394 44.000 0.00 0.00 0.00 3.86
3021 3091 6.583562 GTTTCCATGCTACTAAGTACTCCAT 58.416 40.000 0.00 0.00 0.00 3.41
3022 3092 6.406692 TTCCATGCTACTAAGTACTCCATC 57.593 41.667 0.00 0.00 0.00 3.51
3023 3093 4.833380 TCCATGCTACTAAGTACTCCATCC 59.167 45.833 0.00 0.00 0.00 3.51
3024 3094 4.321304 CCATGCTACTAAGTACTCCATCCG 60.321 50.000 0.00 0.00 0.00 4.18
3025 3095 3.894759 TGCTACTAAGTACTCCATCCGT 58.105 45.455 0.00 0.00 0.00 4.69
3026 3096 5.039920 TGCTACTAAGTACTCCATCCGTA 57.960 43.478 0.00 0.00 0.00 4.02
3027 3097 5.439721 TGCTACTAAGTACTCCATCCGTAA 58.560 41.667 0.00 0.00 0.00 3.18
3028 3098 5.887598 TGCTACTAAGTACTCCATCCGTAAA 59.112 40.000 0.00 0.00 0.00 2.01
3029 3099 6.183360 TGCTACTAAGTACTCCATCCGTAAAC 60.183 42.308 0.00 0.00 0.00 2.01
3030 3100 6.039159 GCTACTAAGTACTCCATCCGTAAACT 59.961 42.308 0.00 0.00 0.00 2.66
3031 3101 7.227512 GCTACTAAGTACTCCATCCGTAAACTA 59.772 40.741 0.00 0.00 0.00 2.24
3032 3102 7.944729 ACTAAGTACTCCATCCGTAAACTAA 57.055 36.000 0.00 0.00 0.00 2.24
3033 3103 8.530804 ACTAAGTACTCCATCCGTAAACTAAT 57.469 34.615 0.00 0.00 0.00 1.73
3034 3104 9.632638 ACTAAGTACTCCATCCGTAAACTAATA 57.367 33.333 0.00 0.00 0.00 0.98
3041 3111 8.305317 ACTCCATCCGTAAACTAATATAAGAGC 58.695 37.037 0.00 0.00 0.00 4.09
3042 3112 7.310664 TCCATCCGTAAACTAATATAAGAGCG 58.689 38.462 0.00 0.00 0.00 5.03
3043 3113 7.040201 TCCATCCGTAAACTAATATAAGAGCGT 60.040 37.037 0.00 0.00 0.00 5.07
3044 3114 7.272948 CCATCCGTAAACTAATATAAGAGCGTC 59.727 40.741 0.00 0.00 0.00 5.19
3045 3115 7.502120 TCCGTAAACTAATATAAGAGCGTCT 57.498 36.000 0.00 0.00 0.00 4.18
3046 3116 8.607441 TCCGTAAACTAATATAAGAGCGTCTA 57.393 34.615 0.00 0.00 0.00 2.59
3047 3117 8.715998 TCCGTAAACTAATATAAGAGCGTCTAG 58.284 37.037 0.00 0.00 0.00 2.43
3048 3118 8.715998 CCGTAAACTAATATAAGAGCGTCTAGA 58.284 37.037 0.00 0.00 0.00 2.43
3053 3123 9.509956 AACTAATATAAGAGCGTCTAGATCACT 57.490 33.333 0.00 0.00 37.82 3.41
3057 3127 9.509956 AATATAAGAGCGTCTAGATCACTACTT 57.490 33.333 0.00 1.05 37.82 2.24
3058 3128 7.811117 ATAAGAGCGTCTAGATCACTACTTT 57.189 36.000 0.00 0.00 37.82 2.66
3059 3129 8.905660 ATAAGAGCGTCTAGATCACTACTTTA 57.094 34.615 0.00 0.00 37.82 1.85
3060 3130 6.854496 AGAGCGTCTAGATCACTACTTTAG 57.146 41.667 0.00 0.00 37.82 1.85
3061 3131 6.350906 AGAGCGTCTAGATCACTACTTTAGT 58.649 40.000 0.00 0.00 37.82 2.24
3075 3145 7.393841 ACTACTTTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 40.05 4.09
3076 3146 7.828712 ACTACTTTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 40.05 2.85
3077 3147 8.954350 ACTACTTTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 40.05 2.10
3078 3148 9.953697 CTACTTTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 40.05 1.73
3093 3163 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
3094 3164 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
3095 3165 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
3096 3166 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
3097 3167 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
3842 3912 0.037326 TAGCAAGACAAGCCCGACAG 60.037 55.000 0.00 0.00 0.00 3.51
3889 3959 9.118300 GATGAGTAGGTTTTCTCATTCATGATT 57.882 33.333 0.00 0.00 46.92 2.57
4289 4359 8.483758 TCTTTCCTGGTTATATCTTACTCAACC 58.516 37.037 0.00 0.00 39.28 3.77
4307 4377 7.224297 ACTCAACCTACAGAACATGTTACATT 58.776 34.615 11.95 0.00 39.96 2.71
4618 4688 7.435488 ACATACGTGATATTACTTTCTGCAGTC 59.565 37.037 14.67 0.63 0.00 3.51
4679 4749 5.420104 AGTCAGGCTAGCTATTTTTGCAAAT 59.580 36.000 13.65 1.10 36.52 2.32
4821 4891 7.148255 TGGATTCATCTTAGTGAAATGAAACCG 60.148 37.037 14.76 0.00 46.86 4.44
4853 4924 1.888436 CTGAACTACAGGGCCGCAGA 61.888 60.000 0.00 0.00 42.39 4.26
5066 5137 0.462937 TGGTTGTGTTCCGTCCACTG 60.463 55.000 0.00 0.00 33.92 3.66
5076 5147 0.244994 CCGTCCACTGGAGAAGACTG 59.755 60.000 0.00 0.00 29.39 3.51
5102 5173 8.706322 AGGTCTGTTATTTCATTTTAGGTTGT 57.294 30.769 0.00 0.00 0.00 3.32
5211 5282 1.115326 GTGCTGCAACCCCTTTCCTT 61.115 55.000 2.77 0.00 0.00 3.36
5225 5296 3.550030 CCTTTCCTTTTTGCACCTACGTG 60.550 47.826 0.00 0.00 43.35 4.49
5290 5361 9.005777 GGTACCTTGTAAAATCTTGTACATCAA 57.994 33.333 4.06 0.00 30.59 2.57
5710 5781 2.795329 AGTTTCTGATCCAACGCCAAT 58.205 42.857 0.00 0.00 0.00 3.16
5713 5784 0.322366 TCTGATCCAACGCCAATGCA 60.322 50.000 0.00 0.00 37.32 3.96
5731 5802 0.529378 CATTGAAGGCTTGAGCACCC 59.471 55.000 3.46 0.00 44.36 4.61
5743 5814 2.384828 TGAGCACCCGTGTATAGTGAT 58.615 47.619 0.00 0.00 33.21 3.06
5762 5833 5.643777 AGTGATGCTTACTGCGTTATTCTTT 59.356 36.000 0.00 0.00 46.63 2.52
5834 5905 6.200100 CGTAGTTCATGTACATAGTCTCCAC 58.800 44.000 8.32 2.98 0.00 4.02
5863 5935 6.771188 GGAGTTTCTCCGTGAATATATGTG 57.229 41.667 0.00 0.00 41.08 3.21
5917 8073 7.015226 TGCTGCATTTCTAACATATGTACAC 57.985 36.000 9.21 0.00 0.00 2.90
6090 8248 3.915437 ACAAATTTTGCCGTAGACTGG 57.085 42.857 9.04 0.00 0.00 4.00
6141 8300 2.930040 ACATGAGAAATAACTGTCGCCG 59.070 45.455 0.00 0.00 0.00 6.46
6164 8323 3.755378 ACAGGCAGTGAATCACTTCAATC 59.245 43.478 13.99 2.10 42.59 2.67
6187 8346 1.438651 TTTCGTCAATCAAGCTCGGG 58.561 50.000 0.00 0.00 0.00 5.14
6208 8367 4.625311 GGGGCAAATTTTGTGAAGAATACG 59.375 41.667 10.65 0.00 0.00 3.06
6213 8372 8.958043 GGCAAATTTTGTGAAGAATACGATATC 58.042 33.333 10.65 0.00 0.00 1.63
6334 8580 7.848491 AGGCGTCAAACTTTATATCGTATTTC 58.152 34.615 0.00 0.00 0.00 2.17
6338 8584 9.831054 CGTCAAACTTTATATCGTATTTCACTC 57.169 33.333 0.00 0.00 0.00 3.51
6353 8599 8.495949 CGTATTTCACTCCATTTACCATCATAC 58.504 37.037 0.00 0.00 0.00 2.39
6374 8620 8.034804 TCATACTGATGGATAATACACCGAATG 58.965 37.037 0.00 0.00 33.49 2.67
6385 8631 2.159382 ACACCGAATGGCTTTAACCTG 58.841 47.619 0.00 0.00 39.70 4.00
6389 8635 2.350498 CCGAATGGCTTTAACCTGTACG 59.650 50.000 0.00 0.00 0.00 3.67
6395 8641 4.057432 TGGCTTTAACCTGTACGTTGTAC 58.943 43.478 0.00 0.22 0.00 2.90
6396 8642 4.202243 TGGCTTTAACCTGTACGTTGTACT 60.202 41.667 0.00 0.00 0.00 2.73
6397 8643 5.010516 TGGCTTTAACCTGTACGTTGTACTA 59.989 40.000 0.00 0.00 0.00 1.82
6398 8644 6.101997 GGCTTTAACCTGTACGTTGTACTAT 58.898 40.000 0.00 0.00 0.00 2.12
6399 8645 7.093988 TGGCTTTAACCTGTACGTTGTACTATA 60.094 37.037 0.00 0.00 0.00 1.31
6400 8646 7.922811 GGCTTTAACCTGTACGTTGTACTATAT 59.077 37.037 0.00 0.00 0.00 0.86
6426 8672 8.459521 TGATTATTCAGTTGCCAAATAAAACG 57.540 30.769 0.00 0.00 30.91 3.60
6427 8673 7.543868 TGATTATTCAGTTGCCAAATAAAACGG 59.456 33.333 0.00 0.00 30.91 4.44
6428 8674 4.657436 TTCAGTTGCCAAATAAAACGGT 57.343 36.364 0.00 0.00 0.00 4.83
6429 8675 5.769484 TTCAGTTGCCAAATAAAACGGTA 57.231 34.783 0.00 0.00 0.00 4.02
6430 8676 5.769484 TCAGTTGCCAAATAAAACGGTAA 57.231 34.783 0.00 0.00 0.00 2.85
6431 8677 6.334102 TCAGTTGCCAAATAAAACGGTAAT 57.666 33.333 0.00 0.00 0.00 1.89
6432 8678 6.153067 TCAGTTGCCAAATAAAACGGTAATG 58.847 36.000 0.00 0.00 0.00 1.90
6433 8679 5.923684 CAGTTGCCAAATAAAACGGTAATGT 59.076 36.000 0.00 0.00 0.00 2.71
6434 8680 6.422400 CAGTTGCCAAATAAAACGGTAATGTT 59.578 34.615 0.00 0.00 0.00 2.71
6435 8681 6.643360 AGTTGCCAAATAAAACGGTAATGTTC 59.357 34.615 0.00 0.00 0.00 3.18
6436 8682 6.085555 TGCCAAATAAAACGGTAATGTTCA 57.914 33.333 0.00 0.00 0.00 3.18
6437 8683 6.692486 TGCCAAATAAAACGGTAATGTTCAT 58.308 32.000 0.00 0.00 0.00 2.57
6438 8684 6.587990 TGCCAAATAAAACGGTAATGTTCATG 59.412 34.615 0.00 0.00 0.00 3.07
6439 8685 6.035542 GCCAAATAAAACGGTAATGTTCATGG 59.964 38.462 0.00 0.00 0.00 3.66
6440 8686 7.316640 CCAAATAAAACGGTAATGTTCATGGA 58.683 34.615 0.00 0.00 0.00 3.41
6441 8687 7.487829 CCAAATAAAACGGTAATGTTCATGGAG 59.512 37.037 0.00 0.00 0.00 3.86
6442 8688 7.696992 AATAAAACGGTAATGTTCATGGAGT 57.303 32.000 0.00 0.00 0.00 3.85
6443 8689 8.795842 AATAAAACGGTAATGTTCATGGAGTA 57.204 30.769 0.00 0.00 0.00 2.59
6444 8690 6.737254 AAAACGGTAATGTTCATGGAGTAG 57.263 37.500 0.00 0.00 0.00 2.57
6445 8691 5.416271 AACGGTAATGTTCATGGAGTAGT 57.584 39.130 0.00 0.00 0.00 2.73
6446 8692 6.534475 AACGGTAATGTTCATGGAGTAGTA 57.466 37.500 0.00 0.00 0.00 1.82
6447 8693 6.145338 ACGGTAATGTTCATGGAGTAGTAG 57.855 41.667 0.00 0.00 0.00 2.57
6448 8694 5.068723 ACGGTAATGTTCATGGAGTAGTAGG 59.931 44.000 0.00 0.00 0.00 3.18
6449 8695 5.509163 CGGTAATGTTCATGGAGTAGTAGGG 60.509 48.000 0.00 0.00 0.00 3.53
6450 8696 5.601313 GGTAATGTTCATGGAGTAGTAGGGA 59.399 44.000 0.00 0.00 0.00 4.20
6451 8697 5.615925 AATGTTCATGGAGTAGTAGGGAC 57.384 43.478 0.00 0.00 0.00 4.46
6452 8698 3.021695 TGTTCATGGAGTAGTAGGGACG 58.978 50.000 0.00 0.00 0.00 4.79
6464 8710 7.039363 GGAGTAGTAGGGACGAGTATTACTCTA 60.039 44.444 19.05 4.45 42.92 2.43
6472 8718 6.432107 GGACGAGTATTACTCTAGCTTCTTG 58.568 44.000 19.05 5.47 42.92 3.02
6474 8720 7.393841 ACGAGTATTACTCTAGCTTCTTGTT 57.606 36.000 19.05 0.00 42.92 2.83
6475 8721 8.503458 ACGAGTATTACTCTAGCTTCTTGTTA 57.497 34.615 19.05 0.00 42.92 2.41
6476 8722 9.122779 ACGAGTATTACTCTAGCTTCTTGTTAT 57.877 33.333 19.05 0.00 42.92 1.89
6477 8723 9.601971 CGAGTATTACTCTAGCTTCTTGTTATC 57.398 37.037 19.05 0.00 42.92 1.75
6482 8728 8.988064 TTACTCTAGCTTCTTGTTATCACTTG 57.012 34.615 0.00 0.00 0.00 3.16
6483 8729 7.233389 ACTCTAGCTTCTTGTTATCACTTGA 57.767 36.000 0.00 0.00 0.00 3.02
6488 8734 9.424319 CTAGCTTCTTGTTATCACTTGAAAGTA 57.576 33.333 0.00 0.00 37.08 2.24
6490 8736 8.940952 AGCTTCTTGTTATCACTTGAAAGTATC 58.059 33.333 0.00 0.00 37.08 2.24
6491 8737 8.940952 GCTTCTTGTTATCACTTGAAAGTATCT 58.059 33.333 0.00 0.00 37.08 1.98
6493 8739 9.778741 TTCTTGTTATCACTTGAAAGTATCTGT 57.221 29.630 0.00 0.00 37.08 3.41
6494 8740 9.208022 TCTTGTTATCACTTGAAAGTATCTGTG 57.792 33.333 0.00 0.00 37.08 3.66
6495 8741 7.364522 TGTTATCACTTGAAAGTATCTGTGC 57.635 36.000 0.00 0.00 37.08 4.57
6496 8742 6.934083 TGTTATCACTTGAAAGTATCTGTGCA 59.066 34.615 0.00 0.00 37.08 4.57
6497 8743 7.607607 TGTTATCACTTGAAAGTATCTGTGCAT 59.392 33.333 0.00 0.00 37.08 3.96
6502 8755 5.764686 ACTTGAAAGTATCTGTGCATCAACA 59.235 36.000 0.00 0.00 37.52 3.33
6511 8764 2.030371 TGTGCATCAACAAAGCTGGAA 58.970 42.857 0.00 0.00 0.00 3.53
6597 8852 8.706492 TCTAGCGTTTTTATTTTCTCGGAATA 57.294 30.769 0.00 0.00 0.00 1.75
6600 8855 8.614994 AGCGTTTTTATTTTCTCGGAATAATG 57.385 30.769 0.00 0.00 31.23 1.90
6631 8886 7.770366 TTATACTTCCCTGTTTTCCTTTTCC 57.230 36.000 0.00 0.00 0.00 3.13
6632 8887 4.265856 ACTTCCCTGTTTTCCTTTTCCT 57.734 40.909 0.00 0.00 0.00 3.36
6633 8888 3.960755 ACTTCCCTGTTTTCCTTTTCCTG 59.039 43.478 0.00 0.00 0.00 3.86
6634 8889 3.963476 TCCCTGTTTTCCTTTTCCTGA 57.037 42.857 0.00 0.00 0.00 3.86
6635 8890 4.258457 TCCCTGTTTTCCTTTTCCTGAA 57.742 40.909 0.00 0.00 0.00 3.02
6636 8891 4.814967 TCCCTGTTTTCCTTTTCCTGAAT 58.185 39.130 0.00 0.00 0.00 2.57
6637 8892 4.832823 TCCCTGTTTTCCTTTTCCTGAATC 59.167 41.667 0.00 0.00 0.00 2.52
6638 8893 4.588528 CCCTGTTTTCCTTTTCCTGAATCA 59.411 41.667 0.00 0.00 0.00 2.57
6639 8894 5.279156 CCCTGTTTTCCTTTTCCTGAATCAG 60.279 44.000 2.68 2.68 0.00 2.90
6682 8937 5.759506 TTTGGTTCTCGCAACTATTTTCA 57.240 34.783 0.00 0.00 0.00 2.69
6683 8938 4.742438 TGGTTCTCGCAACTATTTTCAC 57.258 40.909 0.00 0.00 0.00 3.18
6684 8939 3.500680 TGGTTCTCGCAACTATTTTCACC 59.499 43.478 0.00 0.00 0.00 4.02
6685 8940 3.500680 GGTTCTCGCAACTATTTTCACCA 59.499 43.478 0.00 0.00 0.00 4.17
6686 8941 4.156008 GGTTCTCGCAACTATTTTCACCAT 59.844 41.667 0.00 0.00 0.00 3.55
6687 8942 4.944962 TCTCGCAACTATTTTCACCATG 57.055 40.909 0.00 0.00 0.00 3.66
6688 8943 4.323417 TCTCGCAACTATTTTCACCATGT 58.677 39.130 0.00 0.00 0.00 3.21
6689 8944 5.483811 TCTCGCAACTATTTTCACCATGTA 58.516 37.500 0.00 0.00 0.00 2.29
6690 8945 5.935206 TCTCGCAACTATTTTCACCATGTAA 59.065 36.000 0.00 0.00 0.00 2.41
6691 8946 6.428465 TCTCGCAACTATTTTCACCATGTAAA 59.572 34.615 0.00 0.00 0.00 2.01
6692 8947 7.120579 TCTCGCAACTATTTTCACCATGTAAAT 59.879 33.333 0.00 0.17 33.12 1.40
6693 8948 7.598278 TCGCAACTATTTTCACCATGTAAATT 58.402 30.769 0.00 0.00 31.40 1.82
6694 8949 8.085296 TCGCAACTATTTTCACCATGTAAATTT 58.915 29.630 0.00 0.00 31.40 1.82
6695 8950 8.707839 CGCAACTATTTTCACCATGTAAATTTT 58.292 29.630 0.00 0.00 31.40 1.82
6699 8954 9.927668 ACTATTTTCACCATGTAAATTTTCTGG 57.072 29.630 0.00 4.04 31.40 3.86
6703 8958 9.844257 TTTTCACCATGTAAATTTTCTGGATTT 57.156 25.926 16.06 0.00 0.00 2.17
6704 8959 9.844257 TTTCACCATGTAAATTTTCTGGATTTT 57.156 25.926 16.06 0.00 0.00 1.82
6706 8961 9.921637 TCACCATGTAAATTTTCTGGATTTTAC 57.078 29.630 16.06 0.00 0.00 2.01
6707 8962 9.703892 CACCATGTAAATTTTCTGGATTTTACA 57.296 29.630 16.06 8.90 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.678950 ACCCATTTTGAACCGCCTTG 59.321 50.000 0.00 0.00 0.00 3.61
2 3 0.178975 TGACCCATTTTGAACCGCCT 60.179 50.000 0.00 0.00 0.00 5.52
3 4 0.676736 TTGACCCATTTTGAACCGCC 59.323 50.000 0.00 0.00 0.00 6.13
4 5 1.067821 TGTTGACCCATTTTGAACCGC 59.932 47.619 0.00 0.00 0.00 5.68
5 6 3.658757 ATGTTGACCCATTTTGAACCG 57.341 42.857 0.00 0.00 0.00 4.44
6 7 4.620567 GCCTATGTTGACCCATTTTGAACC 60.621 45.833 0.00 0.00 0.00 3.62
7 8 4.220602 AGCCTATGTTGACCCATTTTGAAC 59.779 41.667 0.00 0.00 0.00 3.18
8 9 4.220382 CAGCCTATGTTGACCCATTTTGAA 59.780 41.667 0.00 0.00 0.00 2.69
9 10 3.763360 CAGCCTATGTTGACCCATTTTGA 59.237 43.478 0.00 0.00 0.00 2.69
10 11 3.763360 TCAGCCTATGTTGACCCATTTTG 59.237 43.478 0.00 0.00 0.00 2.44
11 12 3.763897 GTCAGCCTATGTTGACCCATTTT 59.236 43.478 4.03 0.00 44.32 1.82
12 13 3.356290 GTCAGCCTATGTTGACCCATTT 58.644 45.455 4.03 0.00 44.32 2.32
13 14 3.004752 GTCAGCCTATGTTGACCCATT 57.995 47.619 4.03 0.00 44.32 3.16
14 15 2.717639 GTCAGCCTATGTTGACCCAT 57.282 50.000 4.03 0.00 44.32 4.00
19 20 2.290260 CCACCTTGTCAGCCTATGTTGA 60.290 50.000 0.00 0.00 0.00 3.18
20 21 2.086869 CCACCTTGTCAGCCTATGTTG 58.913 52.381 0.00 0.00 0.00 3.33
21 22 1.985159 TCCACCTTGTCAGCCTATGTT 59.015 47.619 0.00 0.00 0.00 2.71
22 23 1.279271 GTCCACCTTGTCAGCCTATGT 59.721 52.381 0.00 0.00 0.00 2.29
23 24 1.407437 GGTCCACCTTGTCAGCCTATG 60.407 57.143 0.00 0.00 0.00 2.23
24 25 0.912486 GGTCCACCTTGTCAGCCTAT 59.088 55.000 0.00 0.00 0.00 2.57
25 26 1.198759 GGGTCCACCTTGTCAGCCTA 61.199 60.000 0.00 0.00 35.85 3.93
26 27 2.529744 GGGTCCACCTTGTCAGCCT 61.530 63.158 0.00 0.00 35.85 4.58
27 28 2.034221 GGGTCCACCTTGTCAGCC 59.966 66.667 0.00 0.00 35.85 4.85
28 29 2.034221 GGGGTCCACCTTGTCAGC 59.966 66.667 0.00 0.00 40.03 4.26
29 30 3.574952 TGGGGTCCACCTTGTCAG 58.425 61.111 0.00 0.00 40.03 3.51
39 40 4.717313 GAAGGGTGCGTGGGGTCC 62.717 72.222 0.00 0.00 0.00 4.46
40 41 3.948719 TGAAGGGTGCGTGGGGTC 61.949 66.667 0.00 0.00 0.00 4.46
41 42 4.265056 GTGAAGGGTGCGTGGGGT 62.265 66.667 0.00 0.00 0.00 4.95
45 46 4.988598 AGGCGTGAAGGGTGCGTG 62.989 66.667 0.00 0.00 0.00 5.34
46 47 4.681978 GAGGCGTGAAGGGTGCGT 62.682 66.667 0.00 0.00 0.00 5.24
48 49 3.665675 ATCGAGGCGTGAAGGGTGC 62.666 63.158 0.00 0.00 0.00 5.01
49 50 1.079127 AATCGAGGCGTGAAGGGTG 60.079 57.895 0.00 0.00 0.00 4.61
50 51 1.218316 GAATCGAGGCGTGAAGGGT 59.782 57.895 0.00 0.00 0.00 4.34
51 52 1.084370 GTGAATCGAGGCGTGAAGGG 61.084 60.000 0.00 0.00 0.00 3.95
52 53 1.084370 GGTGAATCGAGGCGTGAAGG 61.084 60.000 0.00 0.00 0.00 3.46
53 54 1.084370 GGGTGAATCGAGGCGTGAAG 61.084 60.000 0.00 0.00 0.00 3.02
54 55 1.079405 GGGTGAATCGAGGCGTGAA 60.079 57.895 0.00 0.00 0.00 3.18
55 56 2.577059 GGGTGAATCGAGGCGTGA 59.423 61.111 0.00 0.00 0.00 4.35
56 57 2.511600 GGGGTGAATCGAGGCGTG 60.512 66.667 0.00 0.00 0.00 5.34
57 58 3.000819 TGGGGTGAATCGAGGCGT 61.001 61.111 0.00 0.00 0.00 5.68
58 59 2.202932 CTGGGGTGAATCGAGGCG 60.203 66.667 0.00 0.00 0.00 5.52
59 60 1.144936 CTCTGGGGTGAATCGAGGC 59.855 63.158 0.00 0.00 0.00 4.70
60 61 1.144936 GCTCTGGGGTGAATCGAGG 59.855 63.158 0.00 0.00 0.00 4.63
61 62 0.179089 CAGCTCTGGGGTGAATCGAG 60.179 60.000 0.00 0.00 45.36 4.04
62 63 1.900351 CAGCTCTGGGGTGAATCGA 59.100 57.895 0.00 0.00 45.36 3.59
63 64 1.817099 GCAGCTCTGGGGTGAATCG 60.817 63.158 11.56 0.00 45.36 3.34
64 65 0.106819 ATGCAGCTCTGGGGTGAATC 60.107 55.000 11.56 0.00 45.36 2.52
65 66 0.333993 AATGCAGCTCTGGGGTGAAT 59.666 50.000 11.56 1.83 43.00 2.57
66 67 0.112995 AAATGCAGCTCTGGGGTGAA 59.887 50.000 11.56 0.00 45.36 3.18
67 68 0.112995 AAAATGCAGCTCTGGGGTGA 59.887 50.000 11.56 0.00 45.36 4.02
68 69 0.245539 CAAAATGCAGCTCTGGGGTG 59.754 55.000 1.53 1.53 45.31 4.61
69 70 0.112995 TCAAAATGCAGCTCTGGGGT 59.887 50.000 0.00 0.00 0.00 4.95
70 71 0.815734 CTCAAAATGCAGCTCTGGGG 59.184 55.000 0.00 0.00 0.00 4.96
71 72 0.815734 CCTCAAAATGCAGCTCTGGG 59.184 55.000 0.00 0.00 0.00 4.45
72 73 0.815734 CCCTCAAAATGCAGCTCTGG 59.184 55.000 0.00 0.00 0.00 3.86
73 74 1.743958 CTCCCTCAAAATGCAGCTCTG 59.256 52.381 0.00 0.00 0.00 3.35
74 75 1.954258 GCTCCCTCAAAATGCAGCTCT 60.954 52.381 0.00 0.00 0.00 4.09
75 76 0.455005 GCTCCCTCAAAATGCAGCTC 59.545 55.000 0.00 0.00 0.00 4.09
76 77 0.039326 AGCTCCCTCAAAATGCAGCT 59.961 50.000 0.00 0.00 32.28 4.24
77 78 0.893447 AAGCTCCCTCAAAATGCAGC 59.107 50.000 0.00 0.00 0.00 5.25
78 79 2.686915 CCTAAGCTCCCTCAAAATGCAG 59.313 50.000 0.00 0.00 0.00 4.41
79 80 2.726821 CCTAAGCTCCCTCAAAATGCA 58.273 47.619 0.00 0.00 0.00 3.96
80 81 1.406898 GCCTAAGCTCCCTCAAAATGC 59.593 52.381 0.00 0.00 35.50 3.56
93 94 2.024414 CCCATTACAACCAGCCTAAGC 58.976 52.381 0.00 0.00 40.32 3.09
94 95 3.644966 TCCCATTACAACCAGCCTAAG 57.355 47.619 0.00 0.00 0.00 2.18
95 96 3.332485 ACTTCCCATTACAACCAGCCTAA 59.668 43.478 0.00 0.00 0.00 2.69
96 97 2.916934 ACTTCCCATTACAACCAGCCTA 59.083 45.455 0.00 0.00 0.00 3.93
97 98 1.710809 ACTTCCCATTACAACCAGCCT 59.289 47.619 0.00 0.00 0.00 4.58
98 99 2.215942 ACTTCCCATTACAACCAGCC 57.784 50.000 0.00 0.00 0.00 4.85
99 100 4.523083 TGATACTTCCCATTACAACCAGC 58.477 43.478 0.00 0.00 0.00 4.85
100 101 9.436957 GTATATGATACTTCCCATTACAACCAG 57.563 37.037 0.00 0.00 0.00 4.00
101 102 9.166222 AGTATATGATACTTCCCATTACAACCA 57.834 33.333 0.00 0.00 0.00 3.67
141 142 9.696572 GGGAGGTAGTATCATACATTAGTATCA 57.303 37.037 0.00 0.00 38.88 2.15
142 143 9.924010 AGGGAGGTAGTATCATACATTAGTATC 57.076 37.037 0.00 0.00 38.88 2.24
147 148 8.978472 GCATTAGGGAGGTAGTATCATACATTA 58.022 37.037 0.00 0.00 0.00 1.90
148 149 7.457852 TGCATTAGGGAGGTAGTATCATACATT 59.542 37.037 0.00 0.00 0.00 2.71
149 150 6.959954 TGCATTAGGGAGGTAGTATCATACAT 59.040 38.462 0.00 0.00 0.00 2.29
150 151 6.319715 TGCATTAGGGAGGTAGTATCATACA 58.680 40.000 0.00 0.00 0.00 2.29
151 152 6.852420 TGCATTAGGGAGGTAGTATCATAC 57.148 41.667 0.00 0.00 0.00 2.39
152 153 8.344546 ACTATGCATTAGGGAGGTAGTATCATA 58.655 37.037 3.54 0.00 31.68 2.15
153 154 7.192628 ACTATGCATTAGGGAGGTAGTATCAT 58.807 38.462 3.54 0.00 31.68 2.45
154 155 6.562228 ACTATGCATTAGGGAGGTAGTATCA 58.438 40.000 3.54 0.00 31.68 2.15
155 156 8.770010 ATACTATGCATTAGGGAGGTAGTATC 57.230 38.462 3.54 0.00 31.70 2.24
156 157 8.344546 TGATACTATGCATTAGGGAGGTAGTAT 58.655 37.037 3.54 8.56 36.89 2.12
157 158 7.705700 TGATACTATGCATTAGGGAGGTAGTA 58.294 38.462 3.54 3.44 31.68 1.82
158 159 6.562228 TGATACTATGCATTAGGGAGGTAGT 58.438 40.000 3.54 0.88 31.68 2.73
159 160 7.667575 ATGATACTATGCATTAGGGAGGTAG 57.332 40.000 3.54 0.00 31.68 3.18
161 162 9.373450 CTATATGATACTATGCATTAGGGAGGT 57.627 37.037 3.54 0.00 31.68 3.85
162 163 9.373450 ACTATATGATACTATGCATTAGGGAGG 57.627 37.037 3.54 0.00 31.68 4.30
215 216 3.410508 TGCTACTTTGTGTCATGCATGA 58.589 40.909 25.42 25.42 0.00 3.07
216 217 3.835378 TGCTACTTTGTGTCATGCATG 57.165 42.857 21.07 21.07 0.00 4.06
217 218 5.415389 TGTTATGCTACTTTGTGTCATGCAT 59.585 36.000 0.00 0.00 40.50 3.96
218 219 4.759183 TGTTATGCTACTTTGTGTCATGCA 59.241 37.500 0.00 0.00 35.34 3.96
219 220 5.295431 TGTTATGCTACTTTGTGTCATGC 57.705 39.130 0.00 0.00 0.00 4.06
220 221 9.838975 TTAAATGTTATGCTACTTTGTGTCATG 57.161 29.630 0.00 0.00 0.00 3.07
259 260 6.836007 AGAGAGGGCGTAATATCATATCATGA 59.164 38.462 0.00 0.00 44.55 3.07
260 261 7.048629 AGAGAGGGCGTAATATCATATCATG 57.951 40.000 0.00 0.00 0.00 3.07
261 262 7.667575 AAGAGAGGGCGTAATATCATATCAT 57.332 36.000 0.00 0.00 0.00 2.45
262 263 7.397476 AGAAAGAGAGGGCGTAATATCATATCA 59.603 37.037 0.00 0.00 0.00 2.15
263 264 7.777095 AGAAAGAGAGGGCGTAATATCATATC 58.223 38.462 0.00 0.00 0.00 1.63
264 265 7.726033 AGAAAGAGAGGGCGTAATATCATAT 57.274 36.000 0.00 0.00 0.00 1.78
265 266 7.232737 TGAAGAAAGAGAGGGCGTAATATCATA 59.767 37.037 0.00 0.00 0.00 2.15
266 267 6.042093 TGAAGAAAGAGAGGGCGTAATATCAT 59.958 38.462 0.00 0.00 0.00 2.45
267 268 5.362717 TGAAGAAAGAGAGGGCGTAATATCA 59.637 40.000 0.00 0.00 0.00 2.15
268 269 5.844004 TGAAGAAAGAGAGGGCGTAATATC 58.156 41.667 0.00 0.00 0.00 1.63
269 270 5.871396 TGAAGAAAGAGAGGGCGTAATAT 57.129 39.130 0.00 0.00 0.00 1.28
270 271 5.871396 ATGAAGAAAGAGAGGGCGTAATA 57.129 39.130 0.00 0.00 0.00 0.98
271 272 4.762289 ATGAAGAAAGAGAGGGCGTAAT 57.238 40.909 0.00 0.00 0.00 1.89
272 273 4.553330 AATGAAGAAAGAGAGGGCGTAA 57.447 40.909 0.00 0.00 0.00 3.18
273 274 4.553330 AAATGAAGAAAGAGAGGGCGTA 57.447 40.909 0.00 0.00 0.00 4.42
274 275 3.425162 AAATGAAGAAAGAGAGGGCGT 57.575 42.857 0.00 0.00 0.00 5.68
275 276 5.731686 GCATTAAATGAAGAAAGAGAGGGCG 60.732 44.000 0.00 0.00 0.00 6.13
276 277 5.359292 AGCATTAAATGAAGAAAGAGAGGGC 59.641 40.000 0.00 0.00 0.00 5.19
277 278 8.566260 CATAGCATTAAATGAAGAAAGAGAGGG 58.434 37.037 0.00 0.00 0.00 4.30
278 279 9.334947 TCATAGCATTAAATGAAGAAAGAGAGG 57.665 33.333 0.00 0.00 0.00 3.69
280 281 9.671279 TGTCATAGCATTAAATGAAGAAAGAGA 57.329 29.630 0.00 0.00 34.06 3.10
281 282 9.713740 GTGTCATAGCATTAAATGAAGAAAGAG 57.286 33.333 0.00 0.00 34.06 2.85
282 283 8.677300 GGTGTCATAGCATTAAATGAAGAAAGA 58.323 33.333 0.00 0.00 34.06 2.52
283 284 8.680903 AGGTGTCATAGCATTAAATGAAGAAAG 58.319 33.333 0.00 0.00 34.06 2.62
284 285 8.579850 AGGTGTCATAGCATTAAATGAAGAAA 57.420 30.769 0.00 0.00 34.06 2.52
285 286 7.828717 TGAGGTGTCATAGCATTAAATGAAGAA 59.171 33.333 0.00 0.00 34.06 2.52
286 287 7.337938 TGAGGTGTCATAGCATTAAATGAAGA 58.662 34.615 0.00 0.00 34.06 2.87
287 288 7.558161 TGAGGTGTCATAGCATTAAATGAAG 57.442 36.000 0.00 0.00 34.06 3.02
288 289 7.774625 TGATGAGGTGTCATAGCATTAAATGAA 59.225 33.333 0.00 0.00 43.92 2.57
289 290 7.281841 TGATGAGGTGTCATAGCATTAAATGA 58.718 34.615 0.00 0.00 43.92 2.57
290 291 7.500720 TGATGAGGTGTCATAGCATTAAATG 57.499 36.000 0.00 0.00 43.92 2.32
291 292 8.523915 TTTGATGAGGTGTCATAGCATTAAAT 57.476 30.769 0.00 0.00 43.92 1.40
292 293 7.936496 TTTGATGAGGTGTCATAGCATTAAA 57.064 32.000 0.00 0.00 43.92 1.52
293 294 7.936496 TTTTGATGAGGTGTCATAGCATTAA 57.064 32.000 0.00 0.00 43.92 1.40
294 295 8.407832 CAATTTTGATGAGGTGTCATAGCATTA 58.592 33.333 0.00 0.00 43.92 1.90
295 296 7.262772 CAATTTTGATGAGGTGTCATAGCATT 58.737 34.615 0.00 0.00 43.92 3.56
296 297 6.682113 GCAATTTTGATGAGGTGTCATAGCAT 60.682 38.462 0.00 0.00 43.92 3.79
297 298 5.393352 GCAATTTTGATGAGGTGTCATAGCA 60.393 40.000 0.00 0.00 43.92 3.49
298 299 5.039333 GCAATTTTGATGAGGTGTCATAGC 58.961 41.667 0.00 0.00 43.92 2.97
299 300 5.359009 AGGCAATTTTGATGAGGTGTCATAG 59.641 40.000 0.00 0.00 43.92 2.23
300 301 5.263599 AGGCAATTTTGATGAGGTGTCATA 58.736 37.500 0.00 0.00 43.92 2.15
301 302 4.091549 AGGCAATTTTGATGAGGTGTCAT 58.908 39.130 0.00 0.00 46.75 3.06
302 303 3.499338 AGGCAATTTTGATGAGGTGTCA 58.501 40.909 0.00 0.00 37.02 3.58
303 304 4.702131 ACTAGGCAATTTTGATGAGGTGTC 59.298 41.667 0.00 0.00 0.00 3.67
304 305 4.666512 ACTAGGCAATTTTGATGAGGTGT 58.333 39.130 0.00 0.00 0.00 4.16
305 306 5.183713 TCAACTAGGCAATTTTGATGAGGTG 59.816 40.000 0.00 0.00 0.00 4.00
306 307 5.183904 GTCAACTAGGCAATTTTGATGAGGT 59.816 40.000 0.00 0.00 30.96 3.85
307 308 5.183713 TGTCAACTAGGCAATTTTGATGAGG 59.816 40.000 0.00 0.00 30.96 3.86
308 309 6.258230 TGTCAACTAGGCAATTTTGATGAG 57.742 37.500 0.00 0.00 30.96 2.90
309 310 6.623486 CATGTCAACTAGGCAATTTTGATGA 58.377 36.000 0.00 0.00 34.09 2.92
310 311 5.290158 GCATGTCAACTAGGCAATTTTGATG 59.710 40.000 0.00 0.00 34.09 3.07
311 312 5.047164 TGCATGTCAACTAGGCAATTTTGAT 60.047 36.000 0.00 0.00 34.09 2.57
312 313 4.280425 TGCATGTCAACTAGGCAATTTTGA 59.720 37.500 0.00 0.00 34.09 2.69
313 314 4.558178 TGCATGTCAACTAGGCAATTTTG 58.442 39.130 0.00 0.00 34.09 2.44
314 315 4.870123 TGCATGTCAACTAGGCAATTTT 57.130 36.364 0.00 0.00 34.09 1.82
315 316 4.221262 ACATGCATGTCAACTAGGCAATTT 59.779 37.500 26.61 0.00 35.87 1.82
316 317 3.765511 ACATGCATGTCAACTAGGCAATT 59.234 39.130 26.61 0.00 35.87 2.32
317 318 3.359033 ACATGCATGTCAACTAGGCAAT 58.641 40.909 26.61 0.00 35.87 3.56
318 319 2.794103 ACATGCATGTCAACTAGGCAA 58.206 42.857 26.61 0.00 35.87 4.52
319 320 2.495155 ACATGCATGTCAACTAGGCA 57.505 45.000 26.61 0.00 35.87 4.75
320 321 3.535561 AGTACATGCATGTCAACTAGGC 58.464 45.455 34.54 15.13 41.97 3.93
321 322 4.747108 GCTAGTACATGCATGTCAACTAGG 59.253 45.833 39.53 30.11 43.53 3.02
322 323 5.595885 AGCTAGTACATGCATGTCAACTAG 58.404 41.667 37.75 37.75 44.77 2.57
323 324 5.598416 AGCTAGTACATGCATGTCAACTA 57.402 39.130 34.54 30.78 41.97 2.24
324 325 4.478206 AGCTAGTACATGCATGTCAACT 57.522 40.909 34.54 31.27 41.97 3.16
325 326 5.985530 TCATAGCTAGTACATGCATGTCAAC 59.014 40.000 34.54 26.70 41.97 3.18
326 327 6.160576 TCATAGCTAGTACATGCATGTCAA 57.839 37.500 34.54 16.90 41.97 3.18
327 328 5.789643 TCATAGCTAGTACATGCATGTCA 57.210 39.130 34.54 19.67 41.97 3.58
328 329 7.542890 AGTATCATAGCTAGTACATGCATGTC 58.457 38.462 34.54 24.18 41.97 3.06
329 330 7.473735 AGTATCATAGCTAGTACATGCATGT 57.526 36.000 33.20 33.20 44.48 3.21
330 331 9.676195 GATAGTATCATAGCTAGTACATGCATG 57.324 37.037 25.09 25.09 0.00 4.06
331 332 9.413734 TGATAGTATCATAGCTAGTACATGCAT 57.586 33.333 8.84 0.00 33.59 3.96
332 333 8.807948 TGATAGTATCATAGCTAGTACATGCA 57.192 34.615 8.84 0.00 33.59 3.96
347 348 5.077564 AGGCTGGTCGTAATGATAGTATCA 58.922 41.667 15.10 15.10 44.55 2.15
348 349 5.183331 TGAGGCTGGTCGTAATGATAGTATC 59.817 44.000 2.97 2.97 0.00 2.24
349 350 5.077564 TGAGGCTGGTCGTAATGATAGTAT 58.922 41.667 0.00 0.00 0.00 2.12
350 351 4.466827 TGAGGCTGGTCGTAATGATAGTA 58.533 43.478 0.00 0.00 0.00 1.82
351 352 3.296854 TGAGGCTGGTCGTAATGATAGT 58.703 45.455 0.00 0.00 0.00 2.12
352 353 3.319405 ACTGAGGCTGGTCGTAATGATAG 59.681 47.826 0.00 0.00 0.00 2.08
353 354 3.296854 ACTGAGGCTGGTCGTAATGATA 58.703 45.455 0.00 0.00 0.00 2.15
354 355 2.111384 ACTGAGGCTGGTCGTAATGAT 58.889 47.619 0.00 0.00 0.00 2.45
355 356 1.557099 ACTGAGGCTGGTCGTAATGA 58.443 50.000 0.00 0.00 0.00 2.57
356 357 3.319405 AGATACTGAGGCTGGTCGTAATG 59.681 47.826 0.00 0.00 0.00 1.90
357 358 3.319405 CAGATACTGAGGCTGGTCGTAAT 59.681 47.826 0.00 0.00 32.44 1.89
358 359 2.688446 CAGATACTGAGGCTGGTCGTAA 59.312 50.000 0.00 0.00 32.44 3.18
359 360 2.298610 CAGATACTGAGGCTGGTCGTA 58.701 52.381 0.00 0.00 32.44 3.43
360 361 1.107114 CAGATACTGAGGCTGGTCGT 58.893 55.000 0.00 0.00 32.44 4.34
361 362 1.107114 ACAGATACTGAGGCTGGTCG 58.893 55.000 5.76 0.00 35.18 4.79
362 363 2.362717 GGTACAGATACTGAGGCTGGTC 59.637 54.545 5.76 0.00 35.18 4.02
363 364 2.023888 AGGTACAGATACTGAGGCTGGT 60.024 50.000 5.76 0.00 35.18 4.00
364 365 2.672098 AGGTACAGATACTGAGGCTGG 58.328 52.381 5.76 0.00 35.18 4.85
365 366 4.461081 GGATAGGTACAGATACTGAGGCTG 59.539 50.000 5.76 0.00 35.18 4.85
366 367 4.509482 GGGATAGGTACAGATACTGAGGCT 60.509 50.000 5.76 0.00 35.18 4.58
367 368 3.764972 GGGATAGGTACAGATACTGAGGC 59.235 52.174 5.76 0.00 35.18 4.70
368 369 5.263872 AGGGATAGGTACAGATACTGAGG 57.736 47.826 5.76 0.00 35.18 3.86
369 370 7.554835 GTCATAGGGATAGGTACAGATACTGAG 59.445 44.444 5.76 0.00 35.18 3.35
370 371 7.403671 GTCATAGGGATAGGTACAGATACTGA 58.596 42.308 5.76 0.00 35.18 3.41
371 372 6.603997 GGTCATAGGGATAGGTACAGATACTG 59.396 46.154 0.00 0.00 37.52 2.74
372 373 6.277283 TGGTCATAGGGATAGGTACAGATACT 59.723 42.308 0.00 0.00 0.00 2.12
373 374 6.491383 TGGTCATAGGGATAGGTACAGATAC 58.509 44.000 0.00 0.00 0.00 2.24
374 375 6.730001 TGGTCATAGGGATAGGTACAGATA 57.270 41.667 0.00 0.00 0.00 1.98
375 376 5.616975 TGGTCATAGGGATAGGTACAGAT 57.383 43.478 0.00 0.00 0.00 2.90
376 377 5.616975 ATGGTCATAGGGATAGGTACAGA 57.383 43.478 0.00 0.00 0.00 3.41
377 378 5.780282 TCAATGGTCATAGGGATAGGTACAG 59.220 44.000 0.00 0.00 0.00 2.74
378 379 5.722290 TCAATGGTCATAGGGATAGGTACA 58.278 41.667 0.00 0.00 0.00 2.90
379 380 6.875972 ATCAATGGTCATAGGGATAGGTAC 57.124 41.667 0.00 0.00 0.00 3.34
380 381 7.123697 CGTTATCAATGGTCATAGGGATAGGTA 59.876 40.741 0.00 0.00 0.00 3.08
381 382 6.070767 CGTTATCAATGGTCATAGGGATAGGT 60.071 42.308 0.00 0.00 0.00 3.08
382 383 6.070767 ACGTTATCAATGGTCATAGGGATAGG 60.071 42.308 0.00 0.00 0.00 2.57
383 384 6.936279 ACGTTATCAATGGTCATAGGGATAG 58.064 40.000 0.00 0.00 0.00 2.08
384 385 6.928348 ACGTTATCAATGGTCATAGGGATA 57.072 37.500 0.00 0.00 0.00 2.59
385 386 5.825593 ACGTTATCAATGGTCATAGGGAT 57.174 39.130 0.00 0.00 0.00 3.85
386 387 5.623956 AACGTTATCAATGGTCATAGGGA 57.376 39.130 0.00 0.00 0.00 4.20
387 388 6.285224 TGTAACGTTATCAATGGTCATAGGG 58.715 40.000 11.86 0.00 0.00 3.53
388 389 7.962964 ATGTAACGTTATCAATGGTCATAGG 57.037 36.000 11.86 0.00 0.00 2.57
391 392 9.778741 AGAATATGTAACGTTATCAATGGTCAT 57.221 29.630 11.86 9.69 0.00 3.06
392 393 9.256477 GAGAATATGTAACGTTATCAATGGTCA 57.744 33.333 11.86 2.41 0.00 4.02
393 394 8.425491 CGAGAATATGTAACGTTATCAATGGTC 58.575 37.037 11.86 7.84 0.00 4.02
394 395 7.384115 CCGAGAATATGTAACGTTATCAATGGT 59.616 37.037 11.86 0.25 0.00 3.55
395 396 7.597369 TCCGAGAATATGTAACGTTATCAATGG 59.403 37.037 11.86 7.72 0.00 3.16
396 397 8.515473 TCCGAGAATATGTAACGTTATCAATG 57.485 34.615 11.86 0.00 0.00 2.82
397 398 9.537192 TTTCCGAGAATATGTAACGTTATCAAT 57.463 29.630 11.86 8.53 0.00 2.57
398 399 8.929827 TTTCCGAGAATATGTAACGTTATCAA 57.070 30.769 11.86 1.08 0.00 2.57
399 400 8.929827 TTTTCCGAGAATATGTAACGTTATCA 57.070 30.769 11.86 11.51 0.00 2.15
431 432 1.154197 GCGGAGAAGTGGTTGGTTAC 58.846 55.000 0.00 0.00 0.00 2.50
434 435 0.606401 CATGCGGAGAAGTGGTTGGT 60.606 55.000 0.00 0.00 0.00 3.67
462 463 0.388649 AACAGAGTGGCTAGTTCGCG 60.389 55.000 0.00 0.00 0.00 5.87
552 553 1.734117 GCCAATGTGTGCGGCTTTC 60.734 57.895 0.00 0.00 42.78 2.62
769 780 4.364686 GGAGGGGAGGGTGGGGAA 62.365 72.222 0.00 0.00 0.00 3.97
966 979 0.729116 CGGTGTGTGATTGGATGCTC 59.271 55.000 0.00 0.00 0.00 4.26
1518 1537 1.303898 TGCACCCCATATTCCTGGAA 58.696 50.000 12.26 12.26 38.69 3.53
1753 1773 4.282068 CCGTTTTGATGACAGTTCAACAG 58.718 43.478 0.00 0.00 36.05 3.16
1785 1809 6.813649 TCTTTCGAGAGTCCACATAAATTCAG 59.186 38.462 2.53 0.00 0.00 3.02
1894 1918 6.776603 GTGGGAACTACTCCTAAGCTAGAATA 59.223 42.308 0.00 0.00 44.68 1.75
2431 2455 3.796178 GCGAGCAACTTTTTGACATCAAA 59.204 39.130 2.89 2.89 43.36 2.69
2494 2518 9.139734 TCTAGTGACAATATACGTTTTCCCTAT 57.860 33.333 0.00 0.00 0.00 2.57
2557 2581 2.109128 TGTAACCCTGGCTTCCAATTCA 59.891 45.455 0.00 0.00 30.80 2.57
2622 2646 9.855021 AATGTTTAAGTGTTCCATTTATACTGC 57.145 29.630 0.00 0.00 0.00 4.40
2657 2681 9.912634 TTTGGAGCTATTTGTAAGATCAAAAAG 57.087 29.630 0.00 0.00 40.05 2.27
2705 2731 5.957798 AGTATGAACCTCGTCGATAAACAA 58.042 37.500 0.00 0.00 0.00 2.83
2707 2733 5.819059 AGAGTATGAACCTCGTCGATAAAC 58.181 41.667 0.00 0.00 34.08 2.01
2935 2961 7.924541 ACTTCACAGGTATTTATAAAGGGACA 58.075 34.615 3.94 0.00 0.00 4.02
3016 3086 7.485277 CGCTCTTATATTAGTTTACGGATGGAG 59.515 40.741 0.00 0.00 0.00 3.86
3017 3087 7.040201 ACGCTCTTATATTAGTTTACGGATGGA 60.040 37.037 0.00 0.00 0.00 3.41
3018 3088 7.088905 ACGCTCTTATATTAGTTTACGGATGG 58.911 38.462 0.00 0.00 0.00 3.51
3019 3089 8.021973 AGACGCTCTTATATTAGTTTACGGATG 58.978 37.037 0.00 0.00 0.00 3.51
3020 3090 8.108551 AGACGCTCTTATATTAGTTTACGGAT 57.891 34.615 0.00 0.00 0.00 4.18
3021 3091 7.502120 AGACGCTCTTATATTAGTTTACGGA 57.498 36.000 0.00 0.00 0.00 4.69
3022 3092 8.715998 TCTAGACGCTCTTATATTAGTTTACGG 58.284 37.037 0.00 0.00 0.00 4.02
3027 3097 9.509956 AGTGATCTAGACGCTCTTATATTAGTT 57.490 33.333 0.00 0.00 0.00 2.24
3031 3101 9.509956 AAGTAGTGATCTAGACGCTCTTATATT 57.490 33.333 10.41 0.00 0.00 1.28
3032 3102 9.509956 AAAGTAGTGATCTAGACGCTCTTATAT 57.490 33.333 10.41 0.00 0.00 0.86
3033 3103 8.905660 AAAGTAGTGATCTAGACGCTCTTATA 57.094 34.615 10.41 0.00 0.00 0.98
3034 3104 7.811117 AAAGTAGTGATCTAGACGCTCTTAT 57.189 36.000 10.41 0.00 0.00 1.73
3035 3105 7.986320 ACTAAAGTAGTGATCTAGACGCTCTTA 59.014 37.037 10.41 7.60 37.69 2.10
3036 3106 6.824704 ACTAAAGTAGTGATCTAGACGCTCTT 59.175 38.462 10.41 10.62 37.69 2.85
3037 3107 6.350906 ACTAAAGTAGTGATCTAGACGCTCT 58.649 40.000 10.41 7.61 37.69 4.09
3038 3108 6.607735 ACTAAAGTAGTGATCTAGACGCTC 57.392 41.667 10.41 0.00 37.69 5.03
3051 3121 7.393841 AGAGCGTTTAGATCACTAAAGTAGT 57.606 36.000 0.00 0.00 45.42 2.73
3052 3122 9.953697 ATAAGAGCGTTTAGATCACTAAAGTAG 57.046 33.333 0.00 0.00 45.42 2.57
3067 3137 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
3068 3138 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
3069 3139 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
3070 3140 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
3071 3141 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
3092 3162 8.776470 GCAGACGAGATATAATATACTACTCCC 58.224 40.741 0.00 0.00 0.00 4.30
3093 3163 8.489559 CGCAGACGAGATATAATATACTACTCC 58.510 40.741 0.00 0.00 43.93 3.85
3094 3164 9.247126 TCGCAGACGAGATATAATATACTACTC 57.753 37.037 0.00 0.00 45.12 2.59
3312 3382 3.771577 TGAAGAGTCCCAAGAGGTTTC 57.228 47.619 0.00 0.00 36.75 2.78
3842 3912 1.860484 GCTGAAGCTGAGGGTGTTGC 61.860 60.000 0.00 0.00 38.21 4.17
3889 3959 3.427573 TGTGAAGTCTACTCGGGATGAA 58.572 45.455 0.00 0.00 0.00 2.57
4010 4080 0.911525 ACTGCTGGACTGGTATGCCT 60.912 55.000 0.16 0.00 35.27 4.75
4289 4359 9.897744 ACAAATTCAATGTAACATGTTCTGTAG 57.102 29.630 15.85 4.22 36.98 2.74
4591 4661 7.435488 ACTGCAGAAAGTAATATCACGTATGTC 59.565 37.037 23.35 0.00 0.00 3.06
4679 4749 9.979578 ATAACAATGAACATTTAGCTTGTTGAA 57.020 25.926 6.99 0.00 37.43 2.69
4692 4762 7.765695 AGGACAAAGTCATAACAATGAACAT 57.234 32.000 0.00 0.00 33.68 2.71
4821 4891 7.573283 GCCCTGTAGTTCAGAAAAAGTAATGAC 60.573 40.741 0.00 0.00 46.27 3.06
4877 4948 4.424061 ACCAACATTTGATGTCATGACG 57.576 40.909 20.54 7.19 44.07 4.35
5076 5147 8.793592 ACAACCTAAAATGAAATAACAGACCTC 58.206 33.333 0.00 0.00 0.00 3.85
5351 5422 3.712187 TGCGATACGTAGCATGATTTCA 58.288 40.909 11.90 0.00 38.59 2.69
5502 5573 3.585862 TGTCGTATCCTTGCTGAGAAAC 58.414 45.455 0.00 0.00 0.00 2.78
5710 5781 0.599558 GTGCTCAAGCCTTCAATGCA 59.400 50.000 0.00 0.00 41.18 3.96
5713 5784 0.962356 CGGGTGCTCAAGCCTTCAAT 60.962 55.000 0.00 0.00 44.91 2.57
5731 5802 3.422217 CGCAGTAAGCATCACTATACACG 59.578 47.826 0.00 0.00 46.13 4.49
5743 5814 3.751175 AGCAAAGAATAACGCAGTAAGCA 59.249 39.130 0.00 0.00 45.00 3.91
5762 5833 7.275888 AGAATCAACAAGTTTATCAACAGCA 57.724 32.000 0.00 0.00 35.05 4.41
5863 5935 7.602644 TGTACAGGTGATGTAAGACTTCAATTC 59.397 37.037 0.00 0.00 45.88 2.17
5917 8073 5.918576 TGTACATTACAGTCTGACGAAACAG 59.081 40.000 6.91 0.00 35.51 3.16
6090 8248 3.119096 GTTCCCGGAAGTCTGCGC 61.119 66.667 0.73 0.00 34.61 6.09
6091 8249 2.027625 GTGTTCCCGGAAGTCTGCG 61.028 63.158 0.73 0.00 35.92 5.18
6141 8300 2.771089 TGAAGTGATTCACTGCCTGTC 58.229 47.619 19.65 13.10 44.62 3.51
6180 8339 0.318120 CACAAAATTTGCCCCGAGCT 59.682 50.000 5.52 0.00 44.23 4.09
6187 8346 8.856490 ATATCGTATTCTTCACAAAATTTGCC 57.144 30.769 5.52 0.00 0.00 4.52
6213 8372 9.021863 GTTCCGAGTGTTTAATCTAGTTGATAG 57.978 37.037 0.00 0.00 34.45 2.08
6215 8374 6.817140 GGTTCCGAGTGTTTAATCTAGTTGAT 59.183 38.462 0.00 0.00 36.89 2.57
6225 8384 4.515361 TGTTTCTGGTTCCGAGTGTTTAA 58.485 39.130 0.00 0.00 0.00 1.52
6353 8599 4.393062 GCCATTCGGTGTATTATCCATCAG 59.607 45.833 0.00 0.00 33.28 2.90
6374 8620 4.309933 AGTACAACGTACAGGTTAAAGCC 58.690 43.478 7.02 0.00 0.00 4.35
6400 8646 8.920665 CGTTTTATTTGGCAACTGAATAATCAA 58.079 29.630 0.00 0.00 36.17 2.57
6402 8648 7.544217 ACCGTTTTATTTGGCAACTGAATAATC 59.456 33.333 0.00 0.00 36.17 1.75
6403 8649 7.382898 ACCGTTTTATTTGGCAACTGAATAAT 58.617 30.769 0.00 0.00 36.17 1.28
6406 8652 5.208463 ACCGTTTTATTTGGCAACTGAAT 57.792 34.783 0.00 0.00 37.61 2.57
6407 8653 4.657436 ACCGTTTTATTTGGCAACTGAA 57.343 36.364 0.00 0.00 37.61 3.02
6408 8654 5.769484 TTACCGTTTTATTTGGCAACTGA 57.231 34.783 0.00 0.00 37.61 3.41
6409 8655 5.923684 ACATTACCGTTTTATTTGGCAACTG 59.076 36.000 0.00 0.00 37.61 3.16
6410 8656 6.091718 ACATTACCGTTTTATTTGGCAACT 57.908 33.333 0.00 0.00 37.61 3.16
6411 8657 6.421202 TGAACATTACCGTTTTATTTGGCAAC 59.579 34.615 0.00 0.00 0.00 4.17
6412 8658 6.513180 TGAACATTACCGTTTTATTTGGCAA 58.487 32.000 0.00 0.00 0.00 4.52
6413 8659 6.085555 TGAACATTACCGTTTTATTTGGCA 57.914 33.333 0.00 0.00 0.00 4.92
6414 8660 6.035542 CCATGAACATTACCGTTTTATTTGGC 59.964 38.462 0.00 0.00 0.00 4.52
6415 8661 7.316640 TCCATGAACATTACCGTTTTATTTGG 58.683 34.615 0.00 0.00 0.00 3.28
6416 8662 8.026607 ACTCCATGAACATTACCGTTTTATTTG 58.973 33.333 0.00 0.00 0.00 2.32
6417 8663 8.117813 ACTCCATGAACATTACCGTTTTATTT 57.882 30.769 0.00 0.00 0.00 1.40
6418 8664 7.696992 ACTCCATGAACATTACCGTTTTATT 57.303 32.000 0.00 0.00 0.00 1.40
6419 8665 8.044908 ACTACTCCATGAACATTACCGTTTTAT 58.955 33.333 0.00 0.00 0.00 1.40
6420 8666 7.388437 ACTACTCCATGAACATTACCGTTTTA 58.612 34.615 0.00 0.00 0.00 1.52
6421 8667 6.235664 ACTACTCCATGAACATTACCGTTTT 58.764 36.000 0.00 0.00 0.00 2.43
6422 8668 5.801380 ACTACTCCATGAACATTACCGTTT 58.199 37.500 0.00 0.00 0.00 3.60
6423 8669 5.416271 ACTACTCCATGAACATTACCGTT 57.584 39.130 0.00 0.00 0.00 4.44
6424 8670 5.068723 CCTACTACTCCATGAACATTACCGT 59.931 44.000 0.00 0.00 0.00 4.83
6425 8671 5.509163 CCCTACTACTCCATGAACATTACCG 60.509 48.000 0.00 0.00 0.00 4.02
6426 8672 5.601313 TCCCTACTACTCCATGAACATTACC 59.399 44.000 0.00 0.00 0.00 2.85
6427 8673 6.514063 GTCCCTACTACTCCATGAACATTAC 58.486 44.000 0.00 0.00 0.00 1.89
6428 8674 5.301045 CGTCCCTACTACTCCATGAACATTA 59.699 44.000 0.00 0.00 0.00 1.90
6429 8675 4.099573 CGTCCCTACTACTCCATGAACATT 59.900 45.833 0.00 0.00 0.00 2.71
6430 8676 3.637229 CGTCCCTACTACTCCATGAACAT 59.363 47.826 0.00 0.00 0.00 2.71
6431 8677 3.021695 CGTCCCTACTACTCCATGAACA 58.978 50.000 0.00 0.00 0.00 3.18
6432 8678 3.285484 TCGTCCCTACTACTCCATGAAC 58.715 50.000 0.00 0.00 0.00 3.18
6433 8679 3.053842 ACTCGTCCCTACTACTCCATGAA 60.054 47.826 0.00 0.00 0.00 2.57
6434 8680 2.508716 ACTCGTCCCTACTACTCCATGA 59.491 50.000 0.00 0.00 0.00 3.07
6435 8681 2.933573 ACTCGTCCCTACTACTCCATG 58.066 52.381 0.00 0.00 0.00 3.66
6436 8682 4.997545 ATACTCGTCCCTACTACTCCAT 57.002 45.455 0.00 0.00 0.00 3.41
6437 8683 4.785346 AATACTCGTCCCTACTACTCCA 57.215 45.455 0.00 0.00 0.00 3.86
6438 8684 5.863965 AGTAATACTCGTCCCTACTACTCC 58.136 45.833 0.00 0.00 0.00 3.85
6464 8710 8.854614 ATACTTTCAAGTGATAACAAGAAGCT 57.145 30.769 2.26 0.00 40.07 3.74
6472 8718 7.364522 TGCACAGATACTTTCAAGTGATAAC 57.635 36.000 2.26 0.00 40.07 1.89
6474 8720 7.330262 TGATGCACAGATACTTTCAAGTGATA 58.670 34.615 2.26 0.00 40.07 2.15
6475 8721 6.175471 TGATGCACAGATACTTTCAAGTGAT 58.825 36.000 2.26 0.00 40.07 3.06
6476 8722 5.550290 TGATGCACAGATACTTTCAAGTGA 58.450 37.500 2.26 0.00 40.07 3.41
6477 8723 5.868043 TGATGCACAGATACTTTCAAGTG 57.132 39.130 2.26 0.00 40.07 3.16
6479 8725 6.245115 TGTTGATGCACAGATACTTTCAAG 57.755 37.500 0.00 0.00 0.00 3.02
6482 8728 5.570589 GCTTTGTTGATGCACAGATACTTTC 59.429 40.000 0.00 0.00 0.00 2.62
6483 8729 5.242393 AGCTTTGTTGATGCACAGATACTTT 59.758 36.000 0.00 0.00 0.00 2.66
6488 8734 2.230508 CCAGCTTTGTTGATGCACAGAT 59.769 45.455 0.00 0.00 0.00 2.90
6490 8736 1.610038 TCCAGCTTTGTTGATGCACAG 59.390 47.619 0.00 0.00 0.00 3.66
6491 8737 1.689984 TCCAGCTTTGTTGATGCACA 58.310 45.000 0.00 0.00 0.00 4.57
6492 8738 2.798976 TTCCAGCTTTGTTGATGCAC 57.201 45.000 0.00 0.00 0.00 4.57
6493 8739 4.707030 CTATTCCAGCTTTGTTGATGCA 57.293 40.909 0.00 0.00 0.00 3.96
6520 8773 2.187946 GCCACACGCTCTAGCCAT 59.812 61.111 0.00 0.00 37.91 4.40
6608 8863 6.946009 CAGGAAAAGGAAAACAGGGAAGTATA 59.054 38.462 0.00 0.00 0.00 1.47
6616 8871 5.776744 CTGATTCAGGAAAAGGAAAACAGG 58.223 41.667 5.73 0.00 32.82 4.00
6658 8913 6.474102 GTGAAAATAGTTGCGAGAACCAAAAA 59.526 34.615 0.00 0.00 0.00 1.94
6659 8914 5.974751 GTGAAAATAGTTGCGAGAACCAAAA 59.025 36.000 0.00 0.00 0.00 2.44
6660 8915 5.506649 GGTGAAAATAGTTGCGAGAACCAAA 60.507 40.000 0.00 0.00 0.00 3.28
6661 8916 4.023536 GGTGAAAATAGTTGCGAGAACCAA 60.024 41.667 0.00 0.00 0.00 3.67
6662 8917 3.500680 GGTGAAAATAGTTGCGAGAACCA 59.499 43.478 0.00 0.00 0.00 3.67
6663 8918 3.500680 TGGTGAAAATAGTTGCGAGAACC 59.499 43.478 0.00 0.00 0.00 3.62
6664 8919 4.742438 TGGTGAAAATAGTTGCGAGAAC 57.258 40.909 0.00 0.00 0.00 3.01
6665 8920 4.759693 ACATGGTGAAAATAGTTGCGAGAA 59.240 37.500 0.00 0.00 0.00 2.87
6666 8921 4.323417 ACATGGTGAAAATAGTTGCGAGA 58.677 39.130 0.00 0.00 0.00 4.04
6667 8922 4.685169 ACATGGTGAAAATAGTTGCGAG 57.315 40.909 0.00 0.00 0.00 5.03
6668 8923 6.561737 TTTACATGGTGAAAATAGTTGCGA 57.438 33.333 0.00 0.00 0.00 5.10
6669 8924 7.810766 AATTTACATGGTGAAAATAGTTGCG 57.189 32.000 0.00 0.00 0.00 4.85
6673 8928 9.927668 CCAGAAAATTTACATGGTGAAAATAGT 57.072 29.630 0.00 0.00 0.00 2.12
6677 8932 9.844257 AAATCCAGAAAATTTACATGGTGAAAA 57.156 25.926 13.15 0.00 32.68 2.29
6678 8933 9.844257 AAAATCCAGAAAATTTACATGGTGAAA 57.156 25.926 13.15 0.00 32.68 2.69
6680 8935 9.921637 GTAAAATCCAGAAAATTTACATGGTGA 57.078 29.630 13.15 0.41 37.88 4.02
6681 8936 9.703892 TGTAAAATCCAGAAAATTTACATGGTG 57.296 29.630 13.15 0.00 41.04 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.