Multiple sequence alignment - TraesCS2B01G307300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G307300 chr2B 100.000 4781 0 0 1 4781 439766661 439771441 0.000000e+00 8829.0
1 TraesCS2B01G307300 chr2B 100.000 2466 0 0 5154 7619 439771814 439774279 0.000000e+00 4554.0
2 TraesCS2B01G307300 chr2B 82.609 69 8 4 252 316 138963516 138963448 2.970000e-04 58.4
3 TraesCS2B01G307300 chr2D 92.596 2850 119 27 1 2826 370236627 370239408 0.000000e+00 4010.0
4 TraesCS2B01G307300 chr2D 92.255 1885 102 21 2904 4781 370239407 370241254 0.000000e+00 2632.0
5 TraesCS2B01G307300 chr2D 90.347 1730 82 33 5154 6840 370241349 370243036 0.000000e+00 2191.0
6 TraesCS2B01G307300 chr2D 91.275 596 44 3 7030 7618 370243527 370244121 0.000000e+00 806.0
7 TraesCS2B01G307300 chr2D 95.000 60 3 0 6869 6928 370243034 370243093 2.260000e-15 95.3
8 TraesCS2B01G307300 chr2A 92.993 2412 87 29 444 2826 501316984 501319342 0.000000e+00 3443.0
9 TraesCS2B01G307300 chr2A 94.062 1886 99 11 2904 4781 501319341 501321221 0.000000e+00 2850.0
10 TraesCS2B01G307300 chr2A 94.137 1808 65 15 5154 6929 501321316 501323114 0.000000e+00 2713.0
11 TraesCS2B01G307300 chr2A 91.843 331 21 1 7198 7528 501323277 501323601 2.510000e-124 457.0
12 TraesCS2B01G307300 chr2A 87.565 386 46 2 57 441 501316534 501316918 5.420000e-121 446.0
13 TraesCS2B01G307300 chr2A 93.778 225 14 0 7394 7618 501323601 501323825 9.470000e-89 339.0
14 TraesCS2B01G307300 chr2A 98.529 68 1 0 1 68 501315389 501315456 3.730000e-23 121.0
15 TraesCS2B01G307300 chr6B 77.370 654 129 14 6977 7618 9160270 9160916 3.360000e-98 370.0
16 TraesCS2B01G307300 chr6B 79.348 276 40 14 3610 3874 699007326 699007057 2.180000e-40 178.0
17 TraesCS2B01G307300 chr6D 80.147 272 43 10 3611 3874 459697802 459697534 7.800000e-45 193.0
18 TraesCS2B01G307300 chr6A 79.562 274 41 11 3610 3874 605379651 605379384 1.690000e-41 182.0
19 TraesCS2B01G307300 chr5D 82.278 79 12 1 243 321 328587261 328587337 4.930000e-07 67.6
20 TraesCS2B01G307300 chr1A 96.875 32 1 0 252 283 346468100 346468069 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G307300 chr2B 439766661 439774279 7618 False 6691.500000 8829 100.000000 1 7619 2 chr2B.!!$F1 7618
1 TraesCS2B01G307300 chr2D 370236627 370244121 7494 False 1946.860000 4010 92.294600 1 7618 5 chr2D.!!$F1 7617
2 TraesCS2B01G307300 chr2A 501315389 501323825 8436 False 1481.285714 3443 93.272429 1 7618 7 chr2A.!!$F1 7617
3 TraesCS2B01G307300 chr6B 9160270 9160916 646 False 370.000000 370 77.370000 6977 7618 1 chr6B.!!$F1 641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
685 1851 0.102120 CAGAGCATCCAGACGTCCTC 59.898 60.000 13.01 10.39 33.66 3.71 F
686 1852 1.064946 GAGCATCCAGACGTCCTCG 59.935 63.158 13.01 0.63 43.34 4.63 F
2004 3178 1.492176 GAGGGGAATGAGCCTGATCAA 59.508 52.381 0.00 0.00 31.76 2.57 F
2457 3631 0.035056 AAGGGGGCTGAAACTCATCG 60.035 55.000 0.00 0.00 0.00 3.84 F
3086 4280 0.662619 CAGGTGCAGAGCGAAAACAA 59.337 50.000 0.00 0.00 0.00 2.83 F
3123 4317 1.199097 GATACTTTGGTGTTGGCCACG 59.801 52.381 3.88 0.00 45.52 4.94 F
4224 5419 0.250727 CTGGTCGGTGTTGGGACATT 60.251 55.000 0.00 0.00 39.30 2.71 F
4477 5675 0.451383 GCGCAACAACATATGCTCCA 59.549 50.000 0.30 0.00 40.39 3.86 F
4678 5880 1.000060 CAACTGCATGGAGGTTTGTGG 60.000 52.381 19.22 0.00 0.00 4.17 F
5872 7103 0.323725 ATCCAAAATGTGCCGAGGCT 60.324 50.000 15.75 0.00 42.51 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2270 3444 1.202879 TGGAAGTGCAAACTGGGGTAG 60.203 52.381 0.00 0.00 0.00 3.18 R
2387 3561 1.674962 GGCTTGCAGTCAATGATCCTC 59.325 52.381 0.00 0.00 0.00 3.71 R
2893 4087 0.408700 ACAGGAAGTACTCCCTCCGT 59.591 55.000 0.00 1.12 46.81 4.69 R
3884 5079 0.471022 GCCCCCTGAAGAACCCAAAA 60.471 55.000 0.00 0.00 0.00 2.44 R
3976 5171 0.831711 TCCAGCCACAGTCTGCAGTA 60.832 55.000 14.67 0.00 0.00 2.74 R
4342 5539 1.335689 ACCACTTAACTGACGACGAGC 60.336 52.381 0.00 0.00 0.00 5.03 R
5378 6589 0.758734 TATCCACTGCATTCTCCGGG 59.241 55.000 0.00 0.00 0.00 5.73 R
5573 6784 1.139853 CCAGACTACCAGCAATCCTCC 59.860 57.143 0.00 0.00 0.00 4.30 R
6441 7678 1.985473 TCTTGTCAGGTGCTGCAAAT 58.015 45.000 2.77 0.00 31.36 2.32 R
7025 8631 0.453390 CGCTTTGGCCCTTCAGATTC 59.547 55.000 0.00 0.00 34.44 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 1193 4.280436 ACATGTGGACCTTACAAATCGA 57.720 40.909 0.00 0.00 0.00 3.59
161 1252 5.322754 CATGGCTTAGATGGATTGGATCTT 58.677 41.667 0.00 0.00 32.32 2.40
171 1262 2.648059 GATTGGATCTTGGTGGTGGAG 58.352 52.381 0.00 0.00 0.00 3.86
186 1277 1.070758 GTGGAGCCAGTCAGACTCAAA 59.929 52.381 0.00 0.00 31.88 2.69
198 1290 7.605691 CCAGTCAGACTCAAATCTAAACTTGAT 59.394 37.037 0.00 0.00 31.40 2.57
206 1298 9.520515 ACTCAAATCTAAACTTGATATTGGTGT 57.479 29.630 0.00 0.00 31.40 4.16
293 1385 4.593157 GTCGACTATGAGACATCTGTGAC 58.407 47.826 8.70 0.00 37.34 3.67
329 1421 4.576216 AAAAATGTTGTGTGCGTGGATA 57.424 36.364 0.00 0.00 0.00 2.59
330 1422 4.782019 AAAATGTTGTGTGCGTGGATAT 57.218 36.364 0.00 0.00 0.00 1.63
355 1447 6.475402 TGTGCGTTTATAGTGATGACTGTATG 59.525 38.462 0.00 0.00 33.21 2.39
389 1481 5.502214 GCATATGCGACTACACTATGTTC 57.498 43.478 12.82 0.00 0.00 3.18
390 1482 4.386049 GCATATGCGACTACACTATGTTCC 59.614 45.833 12.82 0.00 0.00 3.62
430 1523 9.829507 AAATTGGTGAGTGATTGTGAATTTAAA 57.170 25.926 0.00 0.00 0.00 1.52
551 1717 4.477975 GTGAGCCGTCCGTCCGAG 62.478 72.222 0.00 0.00 0.00 4.63
556 1722 3.812019 CCGTCCGTCCGAGGTCTG 61.812 72.222 0.00 0.00 0.00 3.51
557 1723 3.054503 CGTCCGTCCGAGGTCTGT 61.055 66.667 0.00 0.00 0.00 3.41
558 1724 2.623915 CGTCCGTCCGAGGTCTGTT 61.624 63.158 0.00 0.00 0.00 3.16
559 1725 1.212229 GTCCGTCCGAGGTCTGTTC 59.788 63.158 0.00 0.00 0.00 3.18
560 1726 1.074423 TCCGTCCGAGGTCTGTTCT 59.926 57.895 0.00 0.00 0.00 3.01
561 1727 1.213013 CCGTCCGAGGTCTGTTCTG 59.787 63.158 0.00 0.00 0.00 3.02
562 1728 1.524863 CCGTCCGAGGTCTGTTCTGT 61.525 60.000 0.00 0.00 0.00 3.41
563 1729 0.314302 CGTCCGAGGTCTGTTCTGTT 59.686 55.000 0.00 0.00 0.00 3.16
564 1730 1.269621 CGTCCGAGGTCTGTTCTGTTT 60.270 52.381 0.00 0.00 0.00 2.83
565 1731 2.135933 GTCCGAGGTCTGTTCTGTTTG 58.864 52.381 0.00 0.00 0.00 2.93
566 1732 1.760613 TCCGAGGTCTGTTCTGTTTGT 59.239 47.619 0.00 0.00 0.00 2.83
567 1733 1.867233 CCGAGGTCTGTTCTGTTTGTG 59.133 52.381 0.00 0.00 0.00 3.33
568 1734 2.550978 CGAGGTCTGTTCTGTTTGTGT 58.449 47.619 0.00 0.00 0.00 3.72
569 1735 2.936498 CGAGGTCTGTTCTGTTTGTGTT 59.064 45.455 0.00 0.00 0.00 3.32
570 1736 3.001330 CGAGGTCTGTTCTGTTTGTGTTC 59.999 47.826 0.00 0.00 0.00 3.18
571 1737 4.192317 GAGGTCTGTTCTGTTTGTGTTCT 58.808 43.478 0.00 0.00 0.00 3.01
572 1738 5.353394 AGGTCTGTTCTGTTTGTGTTCTA 57.647 39.130 0.00 0.00 0.00 2.10
573 1739 5.930135 AGGTCTGTTCTGTTTGTGTTCTAT 58.070 37.500 0.00 0.00 0.00 1.98
574 1740 7.062749 AGGTCTGTTCTGTTTGTGTTCTATA 57.937 36.000 0.00 0.00 0.00 1.31
632 1798 2.428890 GAGTGTCGATTCTCCCTCACAT 59.571 50.000 8.11 0.00 0.00 3.21
654 1820 2.685380 CTGGCTTCTCGACCCCCT 60.685 66.667 0.00 0.00 0.00 4.79
681 1847 2.182791 CGCAGAGCATCCAGACGT 59.817 61.111 0.00 0.00 33.66 4.34
682 1848 1.875813 CGCAGAGCATCCAGACGTC 60.876 63.158 7.70 7.70 33.66 4.34
683 1849 1.520342 GCAGAGCATCCAGACGTCC 60.520 63.158 13.01 0.00 33.66 4.79
684 1850 1.954362 GCAGAGCATCCAGACGTCCT 61.954 60.000 13.01 0.00 33.66 3.85
685 1851 0.102120 CAGAGCATCCAGACGTCCTC 59.898 60.000 13.01 10.39 33.66 3.71
686 1852 1.064946 GAGCATCCAGACGTCCTCG 59.935 63.158 13.01 0.63 43.34 4.63
687 1853 2.583593 GCATCCAGACGTCCTCGC 60.584 66.667 13.01 4.60 41.18 5.03
688 1854 2.105128 CATCCAGACGTCCTCGCC 59.895 66.667 13.01 0.00 41.18 5.54
689 1855 3.148279 ATCCAGACGTCCTCGCCC 61.148 66.667 13.01 0.00 41.18 6.13
739 1905 2.885644 CACCGCCGACGAATCCAG 60.886 66.667 0.00 0.00 43.93 3.86
851 2020 2.741211 GACGGTTCCACCTTCCGC 60.741 66.667 2.72 0.00 46.92 5.54
890 2064 3.587061 TGATTTAGCTCCTCCACCAGAAA 59.413 43.478 0.00 0.00 0.00 2.52
1026 2200 3.118884 CCCAGTATATATACGCCACCACC 60.119 52.174 15.57 0.00 38.28 4.61
1340 2514 7.339212 ACTTCCCATTTCGATTATGTTGATTCA 59.661 33.333 7.13 0.00 0.00 2.57
1551 2725 5.659971 TCCTAGGGTCAGTGAATTTACTACC 59.340 44.000 9.46 10.44 0.00 3.18
1813 2987 2.279582 AGATCGAAGTAAGCACGTGG 57.720 50.000 18.88 0.00 0.00 4.94
1825 2999 4.449391 ACGTGGCTAAGCGTGTTT 57.551 50.000 0.00 0.00 40.03 2.83
1847 3021 4.320023 TGATTTCGGTGCTAGCTTGTTTA 58.680 39.130 17.23 0.00 0.00 2.01
1950 3124 2.652530 GTGGACCGCTACGTGGAA 59.347 61.111 1.81 0.00 36.58 3.53
1953 3127 2.572284 GACCGCTACGTGGAAGCT 59.428 61.111 1.81 0.00 37.85 3.74
2004 3178 1.492176 GAGGGGAATGAGCCTGATCAA 59.508 52.381 0.00 0.00 31.76 2.57
2036 3210 2.762887 TCACATACTCAGAGCTCTTGGG 59.237 50.000 15.27 11.09 0.00 4.12
2181 3355 1.607148 GTCGGGGTTGAAAAAGGTGAG 59.393 52.381 0.00 0.00 0.00 3.51
2208 3382 1.863454 GTGATCTACTTGCCGATGCTG 59.137 52.381 0.00 0.00 38.71 4.41
2270 3444 3.060602 GTGCTGTCCACTCTGTAAGTTC 58.939 50.000 0.00 0.00 41.35 3.01
2387 3561 1.512996 CCGCTGATGCAATAGCCCAG 61.513 60.000 16.89 7.36 40.89 4.45
2395 3569 2.060275 TGCAATAGCCCAGAGGATCAT 58.940 47.619 0.00 0.00 41.13 2.45
2446 3620 0.178924 AATGCTGTGAAAAGGGGGCT 60.179 50.000 0.00 0.00 0.00 5.19
2457 3631 0.035056 AAGGGGGCTGAAACTCATCG 60.035 55.000 0.00 0.00 0.00 3.84
2459 3633 2.115291 GGGGCTGAAACTCATCGCC 61.115 63.158 0.00 0.00 38.20 5.54
2540 3714 6.853720 AGGTATGATCCATAATACGACTTCG 58.146 40.000 0.00 0.00 46.33 3.79
2594 3768 4.021016 CAGTCTAACTTGCTACCTTCCTGT 60.021 45.833 0.00 0.00 0.00 4.00
2597 3771 6.440965 AGTCTAACTTGCTACCTTCCTGTTAT 59.559 38.462 0.00 0.00 0.00 1.89
2598 3772 7.038231 AGTCTAACTTGCTACCTTCCTGTTATT 60.038 37.037 0.00 0.00 0.00 1.40
2600 3774 8.161425 TCTAACTTGCTACCTTCCTGTTATTTT 58.839 33.333 0.00 0.00 0.00 1.82
2602 3776 6.981722 ACTTGCTACCTTCCTGTTATTTTTG 58.018 36.000 0.00 0.00 0.00 2.44
2605 3799 8.644374 TTGCTACCTTCCTGTTATTTTTGTAT 57.356 30.769 0.00 0.00 0.00 2.29
2631 3825 8.812147 ATATATCCACACTGTACGTACAAATG 57.188 34.615 27.16 26.79 35.50 2.32
2640 3834 7.148918 ACACTGTACGTACAAATGTTTATCGTC 60.149 37.037 27.50 1.69 34.01 4.20
2646 3840 6.812656 ACGTACAAATGTTTATCGTCATACCA 59.187 34.615 0.00 0.00 0.00 3.25
2658 3852 5.346181 TCGTCATACCACATTTGTATCCA 57.654 39.130 0.00 0.00 0.00 3.41
2699 3893 6.576185 ACATAGGTGCAATTTGAATTCCATC 58.424 36.000 2.27 0.00 0.00 3.51
2736 3930 5.334802 CCAAAAAGATCTCGTACATGTGCAA 60.335 40.000 14.55 0.00 0.00 4.08
2741 3935 5.660460 AGATCTCGTACATGTGCAATGTTA 58.340 37.500 14.55 5.90 33.76 2.41
2808 4002 7.547370 CCATTTCTTTCCTACAACAAAAACACA 59.453 33.333 0.00 0.00 0.00 3.72
2816 4010 6.809196 TCCTACAACAAAAACACACAATTGTC 59.191 34.615 8.48 0.00 35.09 3.18
2829 4023 8.718102 ACACACAATTGTCTACATTATACTCC 57.282 34.615 8.48 0.00 31.66 3.85
2830 4024 7.769044 ACACACAATTGTCTACATTATACTCCC 59.231 37.037 8.48 0.00 31.66 4.30
2831 4025 7.987458 CACACAATTGTCTACATTATACTCCCT 59.013 37.037 8.48 0.00 31.66 4.20
2832 4026 8.204836 ACACAATTGTCTACATTATACTCCCTC 58.795 37.037 8.48 0.00 0.00 4.30
2833 4027 8.424918 CACAATTGTCTACATTATACTCCCTCT 58.575 37.037 8.48 0.00 0.00 3.69
2834 4028 8.424918 ACAATTGTCTACATTATACTCCCTCTG 58.575 37.037 4.92 0.00 0.00 3.35
2835 4029 8.424918 CAATTGTCTACATTATACTCCCTCTGT 58.575 37.037 0.00 0.00 0.00 3.41
2836 4030 7.973048 TTGTCTACATTATACTCCCTCTGTT 57.027 36.000 0.00 0.00 0.00 3.16
2837 4031 7.584122 TGTCTACATTATACTCCCTCTGTTC 57.416 40.000 0.00 0.00 0.00 3.18
2838 4032 6.550108 TGTCTACATTATACTCCCTCTGTTCC 59.450 42.308 0.00 0.00 0.00 3.62
2839 4033 6.778559 GTCTACATTATACTCCCTCTGTTCCT 59.221 42.308 0.00 0.00 0.00 3.36
2840 4034 7.943447 GTCTACATTATACTCCCTCTGTTCCTA 59.057 40.741 0.00 0.00 0.00 2.94
2841 4035 6.980416 ACATTATACTCCCTCTGTTCCTAC 57.020 41.667 0.00 0.00 0.00 3.18
2842 4036 6.441222 ACATTATACTCCCTCTGTTCCTACA 58.559 40.000 0.00 0.00 0.00 2.74
2843 4037 7.076446 ACATTATACTCCCTCTGTTCCTACAT 58.924 38.462 0.00 0.00 32.86 2.29
2844 4038 8.232412 ACATTATACTCCCTCTGTTCCTACATA 58.768 37.037 0.00 0.00 32.86 2.29
2845 4039 9.261035 CATTATACTCCCTCTGTTCCTACATAT 57.739 37.037 0.00 0.00 32.86 1.78
2848 4042 8.830915 ATACTCCCTCTGTTCCTACATATATG 57.169 38.462 11.29 11.29 32.86 1.78
2849 4043 6.864421 ACTCCCTCTGTTCCTACATATATGA 58.136 40.000 19.63 2.59 32.86 2.15
2850 4044 6.722129 ACTCCCTCTGTTCCTACATATATGAC 59.278 42.308 19.63 7.09 32.86 3.06
2851 4045 5.710567 TCCCTCTGTTCCTACATATATGACG 59.289 44.000 19.63 8.99 32.86 4.35
2852 4046 5.477291 CCCTCTGTTCCTACATATATGACGT 59.523 44.000 19.63 0.00 32.86 4.34
2853 4047 6.015350 CCCTCTGTTCCTACATATATGACGTT 60.015 42.308 19.63 0.00 32.86 3.99
2854 4048 7.434492 CCTCTGTTCCTACATATATGACGTTT 58.566 38.462 19.63 0.00 32.86 3.60
2855 4049 7.926555 CCTCTGTTCCTACATATATGACGTTTT 59.073 37.037 19.63 0.00 32.86 2.43
2856 4050 8.642908 TCTGTTCCTACATATATGACGTTTTG 57.357 34.615 19.63 3.74 32.86 2.44
2857 4051 7.709182 TCTGTTCCTACATATATGACGTTTTGG 59.291 37.037 19.63 7.01 32.86 3.28
2858 4052 6.259167 TGTTCCTACATATATGACGTTTTGGC 59.741 38.462 19.63 2.30 0.00 4.52
2859 4053 5.919755 TCCTACATATATGACGTTTTGGCA 58.080 37.500 19.63 0.00 0.00 4.92
2860 4054 5.989168 TCCTACATATATGACGTTTTGGCAG 59.011 40.000 19.63 1.26 0.00 4.85
2861 4055 5.758296 CCTACATATATGACGTTTTGGCAGT 59.242 40.000 19.63 0.00 0.00 4.40
2862 4056 6.260050 CCTACATATATGACGTTTTGGCAGTT 59.740 38.462 19.63 0.00 0.00 3.16
2863 4057 6.509418 ACATATATGACGTTTTGGCAGTTT 57.491 33.333 19.63 0.00 0.00 2.66
2864 4058 6.321717 ACATATATGACGTTTTGGCAGTTTG 58.678 36.000 19.63 0.00 0.00 2.93
2865 4059 6.150307 ACATATATGACGTTTTGGCAGTTTGA 59.850 34.615 19.63 0.00 0.00 2.69
2866 4060 3.791973 ATGACGTTTTGGCAGTTTGAA 57.208 38.095 0.00 0.00 0.00 2.69
2867 4061 2.869897 TGACGTTTTGGCAGTTTGAAC 58.130 42.857 0.00 0.00 0.00 3.18
2868 4062 2.190161 GACGTTTTGGCAGTTTGAACC 58.810 47.619 0.00 0.00 0.00 3.62
2869 4063 1.196200 CGTTTTGGCAGTTTGAACCG 58.804 50.000 0.00 0.00 0.00 4.44
2870 4064 0.927537 GTTTTGGCAGTTTGAACCGC 59.072 50.000 0.00 0.00 0.00 5.68
2875 4069 3.354131 GCAGTTTGAACCGCCAAAA 57.646 47.368 0.00 0.00 37.72 2.44
2876 4070 0.927537 GCAGTTTGAACCGCCAAAAC 59.072 50.000 0.00 0.00 37.72 2.43
2877 4071 1.196200 CAGTTTGAACCGCCAAAACG 58.804 50.000 0.00 0.00 37.72 3.60
2878 4072 0.812549 AGTTTGAACCGCCAAAACGT 59.187 45.000 0.00 0.00 37.72 3.99
2879 4073 1.193644 GTTTGAACCGCCAAAACGTC 58.806 50.000 0.00 0.00 37.72 4.34
2880 4074 0.809385 TTTGAACCGCCAAAACGTCA 59.191 45.000 0.00 0.00 33.56 4.35
2881 4075 1.025812 TTGAACCGCCAAAACGTCAT 58.974 45.000 0.00 0.00 0.00 3.06
2882 4076 1.880271 TGAACCGCCAAAACGTCATA 58.120 45.000 0.00 0.00 0.00 2.15
2883 4077 2.428491 TGAACCGCCAAAACGTCATAT 58.572 42.857 0.00 0.00 0.00 1.78
2884 4078 3.597255 TGAACCGCCAAAACGTCATATA 58.403 40.909 0.00 0.00 0.00 0.86
2885 4079 4.193090 TGAACCGCCAAAACGTCATATAT 58.807 39.130 0.00 0.00 0.00 0.86
2886 4080 4.636648 TGAACCGCCAAAACGTCATATATT 59.363 37.500 0.00 0.00 0.00 1.28
2887 4081 5.124138 TGAACCGCCAAAACGTCATATATTT 59.876 36.000 0.00 0.00 0.00 1.40
2888 4082 6.315642 TGAACCGCCAAAACGTCATATATTTA 59.684 34.615 0.00 0.00 0.00 1.40
2889 4083 6.295039 ACCGCCAAAACGTCATATATTTAG 57.705 37.500 0.00 0.00 0.00 1.85
2890 4084 5.237779 ACCGCCAAAACGTCATATATTTAGG 59.762 40.000 0.00 0.00 0.00 2.69
2891 4085 5.334569 CCGCCAAAACGTCATATATTTAGGG 60.335 44.000 0.00 0.00 0.00 3.53
2892 4086 5.467399 CGCCAAAACGTCATATATTTAGGGA 59.533 40.000 0.00 0.00 0.00 4.20
2893 4087 6.017770 CGCCAAAACGTCATATATTTAGGGAA 60.018 38.462 0.00 0.00 0.00 3.97
2894 4088 7.136772 GCCAAAACGTCATATATTTAGGGAAC 58.863 38.462 0.00 0.00 0.00 3.62
2895 4089 7.349711 CCAAAACGTCATATATTTAGGGAACG 58.650 38.462 0.00 0.00 0.00 3.95
2896 4090 7.349711 CAAAACGTCATATATTTAGGGAACGG 58.650 38.462 0.00 0.00 0.00 4.44
2897 4091 6.409524 AACGTCATATATTTAGGGAACGGA 57.590 37.500 0.00 0.00 0.00 4.69
2898 4092 6.022163 ACGTCATATATTTAGGGAACGGAG 57.978 41.667 0.00 0.00 0.00 4.63
2899 4093 5.047519 ACGTCATATATTTAGGGAACGGAGG 60.048 44.000 0.00 0.00 0.00 4.30
2900 4094 5.623824 CGTCATATATTTAGGGAACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
2901 4095 5.482878 GTCATATATTTAGGGAACGGAGGGA 59.517 44.000 0.00 0.00 0.00 4.20
2902 4096 5.720041 TCATATATTTAGGGAACGGAGGGAG 59.280 44.000 0.00 0.00 0.00 4.30
2905 4099 2.149973 TTAGGGAACGGAGGGAGTAC 57.850 55.000 0.00 0.00 0.00 2.73
2929 4123 7.351952 ACTTCCTGTTTTAGACCCTAAAACTT 58.648 34.615 27.94 12.85 43.79 2.66
2963 4157 5.345741 CACAAAGAGTCATTTATTTTGCCCG 59.654 40.000 0.00 0.00 33.28 6.13
2990 4184 7.069702 ACATCCCACATTATACATTTGCAATCA 59.930 33.333 0.00 0.00 0.00 2.57
3006 4200 7.862512 TTGCAATCAAATAATTGGATTTCCC 57.137 32.000 0.00 0.00 36.93 3.97
3027 4221 5.125417 TCCCTTTTCAAAACTCAGAAGTGTG 59.875 40.000 0.00 0.00 35.36 3.82
3086 4280 0.662619 CAGGTGCAGAGCGAAAACAA 59.337 50.000 0.00 0.00 0.00 2.83
3123 4317 1.199097 GATACTTTGGTGTTGGCCACG 59.801 52.381 3.88 0.00 45.52 4.94
3202 4396 4.201940 TGTTCTTCATTGATGCCTTATGCG 60.202 41.667 0.00 0.00 45.60 4.73
3208 4402 1.882912 TGATGCCTTATGCGATGTCC 58.117 50.000 0.00 0.00 45.60 4.02
3229 4423 5.800941 GTCCGAACTCTAAAGTGTCAGTATG 59.199 44.000 0.00 0.00 35.36 2.39
3230 4424 5.475909 TCCGAACTCTAAAGTGTCAGTATGT 59.524 40.000 0.00 0.00 35.36 2.29
3249 4443 8.771766 CAGTATGTTCTTGATCATGGATGTTAG 58.228 37.037 8.60 0.00 0.00 2.34
3303 4497 6.543465 TCATATGCACAGAATTGGTTTAGAGG 59.457 38.462 0.00 0.00 0.00 3.69
3336 4530 6.603201 TCCAAAGTCTGAAGTTTTCTCATGTT 59.397 34.615 0.00 0.00 0.00 2.71
3340 4534 6.352516 AGTCTGAAGTTTTCTCATGTTCAGT 58.647 36.000 15.53 0.73 43.04 3.41
3384 4578 8.885722 GGCATTTGTTTGACATATGAAAATCAT 58.114 29.630 10.38 0.00 39.05 2.45
3432 4626 5.104193 ACAATGGATAGCTGGAAGAGATGTT 60.104 40.000 0.00 0.00 34.07 2.71
3439 4633 2.440409 CTGGAAGAGATGTTTGGTGGG 58.560 52.381 0.00 0.00 34.07 4.61
3482 4676 9.926158 AACAAGTTCAACAATTTATATGCATCA 57.074 25.926 0.19 0.00 0.00 3.07
3483 4677 9.357652 ACAAGTTCAACAATTTATATGCATCAC 57.642 29.630 0.19 0.00 0.00 3.06
3498 4692 4.297510 TGCATCACATTTGTTAAGCACAC 58.702 39.130 0.00 0.00 33.98 3.82
3524 4718 7.703058 ACATTCCGGAAACTTCTTTATCAAT 57.297 32.000 23.08 0.00 0.00 2.57
3549 4743 4.218635 GGGAGATCACCTTTCAACCTTTTC 59.781 45.833 9.20 0.00 0.00 2.29
3559 4753 5.061684 CCTTTCAACCTTTTCGTTTTGTGTC 59.938 40.000 0.00 0.00 0.00 3.67
3560 4754 3.749404 TCAACCTTTTCGTTTTGTGTCG 58.251 40.909 0.00 0.00 0.00 4.35
3591 4785 6.531439 ACAATTACGCGAGTTATTTCTCAAC 58.469 36.000 15.93 0.00 46.40 3.18
3683 4877 5.045651 TGCAGAGGATCCATTGTTTCTTCTA 60.046 40.000 15.82 0.00 33.66 2.10
3737 4931 3.570540 ACCCTTAACCCCGTAGACTATC 58.429 50.000 0.00 0.00 0.00 2.08
3754 4949 7.883391 AGACTATCGTATACCCTTGGATATG 57.117 40.000 0.00 0.00 0.00 1.78
3787 4982 1.226746 GTGAAGTGTGCAGGGTGTAC 58.773 55.000 0.00 0.00 33.42 2.90
3882 5077 8.989131 ACAGACATATACTGGTAAGGTGTAAAT 58.011 33.333 11.87 0.00 39.38 1.40
3883 5078 9.261180 CAGACATATACTGGTAAGGTGTAAATG 57.739 37.037 0.00 0.00 0.00 2.32
3884 5079 8.989131 AGACATATACTGGTAAGGTGTAAATGT 58.011 33.333 0.00 0.00 0.00 2.71
3891 5086 5.209659 TGGTAAGGTGTAAATGTTTTGGGT 58.790 37.500 0.00 0.00 0.00 4.51
3915 5110 3.197927 TCAGGGGGCATAAATTTGGTT 57.802 42.857 0.00 0.00 0.00 3.67
3916 5111 3.525862 TCAGGGGGCATAAATTTGGTTT 58.474 40.909 0.00 0.00 0.00 3.27
3918 5113 3.262915 CAGGGGGCATAAATTTGGTTTCA 59.737 43.478 0.00 0.00 0.00 2.69
3921 5116 4.263287 GGGGGCATAAATTTGGTTTCAGTT 60.263 41.667 0.00 0.00 0.00 3.16
3976 5171 4.389374 CCTGTTTCACTTACATCAGGTGT 58.611 43.478 0.00 0.00 44.95 4.16
4071 5266 6.995511 TCTCGTTTATGAAGGGGTAATTTG 57.004 37.500 0.00 0.00 0.00 2.32
4137 5332 1.413812 ACCCTTTGCTTTTGAGGCTTG 59.586 47.619 0.00 0.00 0.00 4.01
4148 5343 5.509670 GCTTTTGAGGCTTGTTTAGATTGGT 60.510 40.000 0.00 0.00 0.00 3.67
4151 5346 4.326826 TGAGGCTTGTTTAGATTGGTCTG 58.673 43.478 0.00 0.00 35.87 3.51
4154 5349 3.366374 GGCTTGTTTAGATTGGTCTGTGC 60.366 47.826 0.00 0.00 35.87 4.57
4224 5419 0.250727 CTGGTCGGTGTTGGGACATT 60.251 55.000 0.00 0.00 39.30 2.71
4278 5473 1.127951 GCACCAACACTTATCCGTTCG 59.872 52.381 0.00 0.00 0.00 3.95
4342 5539 5.771469 TGTGTGCTCATTTGAACATTTAGG 58.229 37.500 0.00 0.00 0.00 2.69
4349 5546 4.092821 TCATTTGAACATTTAGGCTCGTCG 59.907 41.667 0.00 0.00 0.00 5.12
4366 5563 1.525619 GTCGTCAGTTAAGTGGTGCAC 59.474 52.381 8.80 8.80 34.10 4.57
4393 5590 3.005155 GCAGCACTTCTTTTCCTCACAAT 59.995 43.478 0.00 0.00 0.00 2.71
4394 5591 4.500375 GCAGCACTTCTTTTCCTCACAATT 60.500 41.667 0.00 0.00 0.00 2.32
4396 5593 6.044682 CAGCACTTCTTTTCCTCACAATTTT 58.955 36.000 0.00 0.00 0.00 1.82
4477 5675 0.451383 GCGCAACAACATATGCTCCA 59.549 50.000 0.30 0.00 40.39 3.86
4497 5695 6.090628 GCTCCAGAGCGAAATCTCTAATAATG 59.909 42.308 3.49 0.00 45.29 1.90
4502 5700 6.644592 AGAGCGAAATCTCTAATAATGTCTGC 59.355 38.462 0.00 0.00 41.35 4.26
4522 5720 9.302345 TGTCTGCACGTTTATGAAAATTTAAAA 57.698 25.926 0.00 0.00 0.00 1.52
4611 5813 3.445805 TGCAGTATGTTGATCGGTACTCA 59.554 43.478 0.00 0.00 39.31 3.41
4678 5880 1.000060 CAACTGCATGGAGGTTTGTGG 60.000 52.381 19.22 0.00 0.00 4.17
4685 5887 4.018870 TGCATGGAGGTTTGTGGTTATCTA 60.019 41.667 0.00 0.00 0.00 1.98
4686 5888 5.133221 GCATGGAGGTTTGTGGTTATCTAT 58.867 41.667 0.00 0.00 0.00 1.98
4694 5896 9.315525 GAGGTTTGTGGTTATCTATTTAGTCTC 57.684 37.037 0.00 0.00 0.00 3.36
4711 5913 2.533942 GTCTCAAAATTGCAACGCGTTT 59.466 40.909 24.21 4.60 0.00 3.60
4717 5919 4.445353 AAATTGCAACGCGTTTAAAAGG 57.555 36.364 24.21 11.23 0.00 3.11
5188 6390 4.688879 TGTCGAATCGAACTGTAATGCTTT 59.311 37.500 7.01 0.00 37.72 3.51
5278 6487 6.873997 TCTTTGGTGTACAGGTATACATGAG 58.126 40.000 23.38 8.17 37.40 2.90
5362 6573 1.462283 CAGCCAGTGATTGTTGACGAG 59.538 52.381 0.00 0.00 0.00 4.18
5368 6579 3.187227 CAGTGATTGTTGACGAGAAAGGG 59.813 47.826 0.00 0.00 0.00 3.95
5378 6589 1.809869 GAGAAAGGGCGGGAAATGC 59.190 57.895 0.00 0.00 0.00 3.56
5566 6777 4.664150 ATTTCGGCCAAAACTTCTTCAA 57.336 36.364 2.24 0.00 0.00 2.69
5573 6784 5.050837 CGGCCAAAACTTCTTCAAAATTGAG 60.051 40.000 2.24 0.00 38.61 3.02
5582 6793 5.649782 TCTTCAAAATTGAGGAGGATTGC 57.350 39.130 4.08 0.00 38.22 3.56
5584 6795 5.184479 TCTTCAAAATTGAGGAGGATTGCTG 59.816 40.000 4.08 0.00 38.22 4.41
5598 6809 4.721776 AGGATTGCTGGTAGTCTGGAATAA 59.278 41.667 0.00 0.00 36.00 1.40
5630 6841 7.658982 TGATCCAGAATTACATGTTCATAGCTC 59.341 37.037 2.30 0.00 0.00 4.09
5633 6844 7.994911 TCCAGAATTACATGTTCATAGCTCAAT 59.005 33.333 2.30 0.00 0.00 2.57
5719 6930 9.460019 TGATGTTATCAATGTCAGGTAATTTCA 57.540 29.630 0.00 0.00 36.11 2.69
5721 6932 7.747888 TGTTATCAATGTCAGGTAATTTCACG 58.252 34.615 0.00 0.00 0.00 4.35
5722 6933 4.678509 TCAATGTCAGGTAATTTCACGC 57.321 40.909 0.00 0.00 0.00 5.34
5723 6934 4.323417 TCAATGTCAGGTAATTTCACGCT 58.677 39.130 0.00 0.00 0.00 5.07
5725 6936 4.946784 ATGTCAGGTAATTTCACGCTTC 57.053 40.909 0.00 0.00 0.00 3.86
5726 6937 3.071479 TGTCAGGTAATTTCACGCTTCC 58.929 45.455 0.00 0.00 0.00 3.46
5742 6973 7.429633 TCACGCTTCCTTTGAATTGAAATTAA 58.570 30.769 0.00 0.00 0.00 1.40
5809 7040 8.164733 TGACCCATATTTTAAAACTGTAGTGGA 58.835 33.333 1.97 0.00 0.00 4.02
5872 7103 0.323725 ATCCAAAATGTGCCGAGGCT 60.324 50.000 15.75 0.00 42.51 4.58
5881 7112 2.980233 GCCGAGGCTGCTGTTGTT 60.980 61.111 6.90 0.00 38.26 2.83
5887 7118 2.436417 GAGGCTGCTGTTGTTGGAATA 58.564 47.619 0.00 0.00 0.00 1.75
5910 7141 2.187958 CCATGAGGTCCAGTCCAGTAA 58.812 52.381 0.00 0.00 0.00 2.24
5914 7145 3.248024 TGAGGTCCAGTCCAGTAATTGT 58.752 45.455 0.00 0.00 0.00 2.71
5944 7175 5.483231 CCTCTCTTTCTGGCTCCATATCATA 59.517 44.000 0.00 0.00 0.00 2.15
5965 7196 2.350895 CCCACCATGGCTTCGTCA 59.649 61.111 13.04 0.00 35.79 4.35
5995 7226 9.319143 CTGAGGTCTTAAATCAGTAATACTTGG 57.681 37.037 0.00 0.00 36.52 3.61
6078 7309 5.352569 CAGTGATGATCTACGAAAAAGCCTT 59.647 40.000 0.00 0.00 0.00 4.35
6123 7354 8.947115 CAGGTATTTTCTTCCGATAGTTTCTTT 58.053 33.333 0.00 0.00 0.00 2.52
6172 7409 2.651455 CATGTGTGATGGAATGAGCCT 58.349 47.619 0.00 0.00 0.00 4.58
6182 7419 1.745653 GGAATGAGCCTGGCTAACAAC 59.254 52.381 23.44 9.41 39.88 3.32
6663 7900 5.105473 ACGTTGTCACCTATACTTGTAGCAT 60.105 40.000 0.00 0.00 0.00 3.79
6772 8017 1.291877 CTTGAGGTTCGGGAGTTGCG 61.292 60.000 0.00 0.00 0.00 4.85
6909 8154 1.865340 GACGAACACTTGAAGGTGACC 59.135 52.381 0.00 0.00 40.13 4.02
6929 8174 4.848357 ACCTGAGTGGATATTGAGGTTTG 58.152 43.478 0.00 0.00 39.71 2.93
6930 8175 4.202441 CCTGAGTGGATATTGAGGTTTGG 58.798 47.826 0.00 0.00 38.35 3.28
6931 8176 4.080356 CCTGAGTGGATATTGAGGTTTGGA 60.080 45.833 0.00 0.00 38.35 3.53
6932 8177 5.102953 TGAGTGGATATTGAGGTTTGGAG 57.897 43.478 0.00 0.00 0.00 3.86
6936 8181 5.946377 AGTGGATATTGAGGTTTGGAGTTTC 59.054 40.000 0.00 0.00 0.00 2.78
6937 8182 5.125578 GTGGATATTGAGGTTTGGAGTTTCC 59.874 44.000 0.00 0.00 36.96 3.13
6938 8183 4.645136 GGATATTGAGGTTTGGAGTTTCCC 59.355 45.833 0.00 0.00 35.03 3.97
6939 8184 2.375014 TTGAGGTTTGGAGTTTCCCC 57.625 50.000 0.00 0.00 35.03 4.81
6941 8186 1.133606 TGAGGTTTGGAGTTTCCCCAC 60.134 52.381 0.00 0.00 35.03 4.61
6943 8188 1.573857 AGGTTTGGAGTTTCCCCACTT 59.426 47.619 0.00 0.00 35.03 3.16
6946 8191 2.065899 TTGGAGTTTCCCCACTTGTG 57.934 50.000 0.00 0.00 35.03 3.33
6948 8193 2.128535 TGGAGTTTCCCCACTTGTGTA 58.871 47.619 0.00 0.00 35.03 2.90
6949 8194 2.714250 TGGAGTTTCCCCACTTGTGTAT 59.286 45.455 0.00 0.00 35.03 2.29
6950 8195 3.911260 TGGAGTTTCCCCACTTGTGTATA 59.089 43.478 0.00 0.00 35.03 1.47
6951 8196 4.538490 TGGAGTTTCCCCACTTGTGTATAT 59.462 41.667 0.00 0.00 35.03 0.86
6954 8199 6.541278 GGAGTTTCCCCACTTGTGTATATTAC 59.459 42.308 0.00 0.00 0.00 1.89
6956 8201 7.336396 AGTTTCCCCACTTGTGTATATTACTC 58.664 38.462 0.00 0.00 0.00 2.59
6963 8569 7.415206 CCCACTTGTGTATATTACTCAAAAGCC 60.415 40.741 0.00 0.00 40.37 4.35
6969 8575 7.552687 TGTGTATATTACTCAAAAGCCCTCAAG 59.447 37.037 0.00 0.00 30.16 3.02
6993 8599 0.320771 ACAGAAGTACAGGCGCCAAG 60.321 55.000 31.54 23.15 0.00 3.61
6994 8600 0.037326 CAGAAGTACAGGCGCCAAGA 60.037 55.000 31.54 10.01 0.00 3.02
7013 8619 1.125711 ACACGGCAACCTCCCTACTT 61.126 55.000 0.00 0.00 0.00 2.24
7017 8623 0.177373 GGCAACCTCCCTACTTACGG 59.823 60.000 0.00 0.00 0.00 4.02
7019 8625 0.828677 CAACCTCCCTACTTACGGGG 59.171 60.000 0.00 0.00 42.23 5.73
7025 8631 0.828677 CCCTACTTACGGGGTCCTTG 59.171 60.000 0.00 0.00 38.08 3.61
7031 8637 2.236395 ACTTACGGGGTCCTTGAATCTG 59.764 50.000 0.00 0.00 0.00 2.90
7036 8642 1.064389 GGGGTCCTTGAATCTGAAGGG 60.064 57.143 0.00 0.00 40.52 3.95
7071 8677 3.673902 TCCAAGATGATGTTGCGAAGAA 58.326 40.909 0.00 0.00 0.00 2.52
7097 8710 3.095922 GGGGGAACATAGCGAAAGG 57.904 57.895 0.00 0.00 0.00 3.11
7122 8735 2.108952 GGGCATTTCTGGAGTCCCATAT 59.891 50.000 6.74 0.00 42.59 1.78
7176 8789 1.552337 AGTGTTGATGTCGAGGCTGAT 59.448 47.619 0.00 0.00 0.00 2.90
7223 8855 2.641439 GATGGAGTGAGGGAGCTGCG 62.641 65.000 0.00 0.00 0.00 5.18
7337 8975 3.193691 CGTAACAGAGGAGATGGTCTTGT 59.806 47.826 0.00 0.00 0.00 3.16
7353 8991 3.496884 GTCTTGTGATGTAAGTTCGCCAA 59.503 43.478 0.00 0.00 0.00 4.52
7385 9023 1.344438 TGTCATGACGAAGAAGCCAGT 59.656 47.619 20.54 0.00 0.00 4.00
7493 9265 1.536943 GGTGCACCTCGAGGAGAACT 61.537 60.000 37.69 12.53 35.03 3.01
7501 9273 0.624254 TCGAGGAGAACTAGGAGCCA 59.376 55.000 0.00 0.00 0.00 4.75
7518 9290 0.744414 CCATGGGCGAGTAACCTGTG 60.744 60.000 2.85 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
161 1252 2.447572 TGACTGGCTCCACCACCA 60.448 61.111 0.00 0.00 46.36 4.17
171 1262 5.241662 AGTTTAGATTTGAGTCTGACTGGC 58.758 41.667 16.28 2.08 30.06 4.85
186 1277 9.911788 ATGAGAACACCAATATCAAGTTTAGAT 57.088 29.630 0.00 0.00 0.00 1.98
236 1328 5.600898 TCTCCCACTGGATAAATATTGTCGA 59.399 40.000 0.00 0.00 40.80 4.20
237 1329 5.853936 TCTCCCACTGGATAAATATTGTCG 58.146 41.667 0.00 0.00 40.80 4.35
250 1342 0.969894 AGAACGTCTTCTCCCACTGG 59.030 55.000 0.00 0.00 30.11 4.00
285 1377 5.273674 AGATTGATGACATCGTCACAGAT 57.726 39.130 17.75 0.00 45.65 2.90
287 1379 6.892310 TTTAGATTGATGACATCGTCACAG 57.108 37.500 17.75 0.00 45.65 3.66
293 1385 8.791605 CACAACATTTTTAGATTGATGACATCG 58.208 33.333 10.79 0.00 0.00 3.84
329 1421 5.419542 ACAGTCATCACTATAAACGCACAT 58.580 37.500 0.00 0.00 0.00 3.21
330 1422 4.816392 ACAGTCATCACTATAAACGCACA 58.184 39.130 0.00 0.00 0.00 4.57
355 1447 5.164233 AGTCGCATATGCTCATATACACAC 58.836 41.667 24.56 6.22 39.32 3.82
363 1455 5.047731 ACATAGTGTAGTCGCATATGCTCAT 60.048 40.000 24.56 12.44 39.32 2.90
390 1482 4.041444 TCACCAATTTCTCATTTTTGGGGG 59.959 41.667 3.18 0.00 41.90 5.40
550 1716 4.222124 AGAACACAAACAGAACAGACCT 57.778 40.909 0.00 0.00 0.00 3.85
551 1717 7.724305 TTATAGAACACAAACAGAACAGACC 57.276 36.000 0.00 0.00 0.00 3.85
558 1724 9.431887 GTCCACTATTTATAGAACACAAACAGA 57.568 33.333 3.85 0.00 34.50 3.41
559 1725 8.665685 GGTCCACTATTTATAGAACACAAACAG 58.334 37.037 3.85 0.00 34.50 3.16
560 1726 7.608761 GGGTCCACTATTTATAGAACACAAACA 59.391 37.037 3.85 0.00 34.50 2.83
561 1727 7.066645 GGGGTCCACTATTTATAGAACACAAAC 59.933 40.741 3.85 0.00 34.50 2.93
562 1728 7.114095 GGGGTCCACTATTTATAGAACACAAA 58.886 38.462 3.85 0.00 34.50 2.83
563 1729 6.630863 CGGGGTCCACTATTTATAGAACACAA 60.631 42.308 3.85 0.00 34.50 3.33
564 1730 5.163385 CGGGGTCCACTATTTATAGAACACA 60.163 44.000 3.85 0.00 34.50 3.72
565 1731 5.069516 TCGGGGTCCACTATTTATAGAACAC 59.930 44.000 3.85 1.08 34.50 3.32
566 1732 5.069516 GTCGGGGTCCACTATTTATAGAACA 59.930 44.000 3.85 0.00 34.50 3.18
567 1733 5.510349 GGTCGGGGTCCACTATTTATAGAAC 60.510 48.000 3.85 0.19 34.50 3.01
568 1734 4.590222 GGTCGGGGTCCACTATTTATAGAA 59.410 45.833 3.85 0.00 34.50 2.10
569 1735 4.154942 GGTCGGGGTCCACTATTTATAGA 58.845 47.826 3.85 0.00 34.50 1.98
570 1736 3.260128 GGGTCGGGGTCCACTATTTATAG 59.740 52.174 0.00 0.00 36.46 1.31
571 1737 3.242011 GGGTCGGGGTCCACTATTTATA 58.758 50.000 0.00 0.00 0.00 0.98
572 1738 2.052468 GGGTCGGGGTCCACTATTTAT 58.948 52.381 0.00 0.00 0.00 1.40
573 1739 1.499368 GGGTCGGGGTCCACTATTTA 58.501 55.000 0.00 0.00 0.00 1.40
574 1740 1.276859 GGGGTCGGGGTCCACTATTT 61.277 60.000 0.00 0.00 0.00 1.40
595 1761 2.099098 ACACTCTTTTTGGCCTGTTTCG 59.901 45.455 3.32 0.00 0.00 3.46
598 1764 1.676006 CGACACTCTTTTTGGCCTGTT 59.324 47.619 3.32 0.00 0.00 3.16
603 1769 3.120165 GGAGAATCGACACTCTTTTTGGC 60.120 47.826 16.55 0.17 34.37 4.52
604 1770 3.437049 GGGAGAATCGACACTCTTTTTGG 59.563 47.826 16.55 0.00 34.37 3.28
632 1798 1.255667 GGGTCGAGAAGCCAGGTGTA 61.256 60.000 0.00 0.00 45.43 2.90
663 1829 3.260483 CGTCTGGATGCTCTGCGC 61.260 66.667 0.00 0.00 39.77 6.09
890 2064 2.282462 CTGACTTTTGGGGCGCCT 60.282 61.111 28.56 3.45 0.00 5.52
931 2105 4.152625 CTCGCCTTTTGCCGCTCG 62.153 66.667 0.00 0.00 36.24 5.03
932 2106 3.804193 CCTCGCCTTTTGCCGCTC 61.804 66.667 0.00 0.00 36.24 5.03
933 2107 4.329545 TCCTCGCCTTTTGCCGCT 62.330 61.111 0.00 0.00 36.24 5.52
934 2108 3.804193 CTCCTCGCCTTTTGCCGC 61.804 66.667 0.00 0.00 36.24 6.53
935 2109 0.672401 TAACTCCTCGCCTTTTGCCG 60.672 55.000 0.00 0.00 36.24 5.69
936 2110 1.468914 CTTAACTCCTCGCCTTTTGCC 59.531 52.381 0.00 0.00 36.24 4.52
937 2111 1.468914 CCTTAACTCCTCGCCTTTTGC 59.531 52.381 0.00 0.00 0.00 3.68
938 2112 3.003480 CTCCTTAACTCCTCGCCTTTTG 58.997 50.000 0.00 0.00 0.00 2.44
939 2113 2.904434 TCTCCTTAACTCCTCGCCTTTT 59.096 45.455 0.00 0.00 0.00 2.27
940 2114 2.498078 CTCTCCTTAACTCCTCGCCTTT 59.502 50.000 0.00 0.00 0.00 3.11
941 2115 2.104170 CTCTCCTTAACTCCTCGCCTT 58.896 52.381 0.00 0.00 0.00 4.35
942 2116 1.686741 CCTCTCCTTAACTCCTCGCCT 60.687 57.143 0.00 0.00 0.00 5.52
943 2117 0.747852 CCTCTCCTTAACTCCTCGCC 59.252 60.000 0.00 0.00 0.00 5.54
944 2118 1.135333 CACCTCTCCTTAACTCCTCGC 59.865 57.143 0.00 0.00 0.00 5.03
1099 2273 4.965858 GAGCGGCGATCGAGACGG 62.966 72.222 21.57 6.85 42.43 4.79
1551 2725 1.919956 AACTCGGCGGTCAGTACTCG 61.920 60.000 7.21 0.00 0.00 4.18
1813 2987 2.095919 ACCGAAATCAAACACGCTTAGC 60.096 45.455 0.00 0.00 0.00 3.09
1825 2999 2.472695 ACAAGCTAGCACCGAAATCA 57.527 45.000 18.83 0.00 0.00 2.57
1847 3021 2.114616 GACACTCTGTCCTCCCATCAT 58.885 52.381 0.00 0.00 41.37 2.45
1953 3127 2.589157 AATCTTCGCACCGTCCCCA 61.589 57.895 0.00 0.00 0.00 4.96
2004 3178 4.713814 TCTGAGTATGTGAGCTTTCCATCT 59.286 41.667 0.00 0.00 0.00 2.90
2036 3210 5.359860 AGCATATTTACCTGGCAAACCTTAC 59.640 40.000 0.00 0.00 36.63 2.34
2181 3355 1.373570 GCAAGTAGATCACCACAGCC 58.626 55.000 0.00 0.00 0.00 4.85
2256 3430 3.170717 TGGGGTAGAACTTACAGAGTGG 58.829 50.000 0.00 0.00 39.00 4.00
2270 3444 1.202879 TGGAAGTGCAAACTGGGGTAG 60.203 52.381 0.00 0.00 0.00 3.18
2324 3498 9.812347 ACCTGGATAATAATTCAGCATCATAAA 57.188 29.630 0.00 0.00 37.39 1.40
2345 3519 2.908073 GCCAGCAAACACGACCTGG 61.908 63.158 0.00 0.00 45.93 4.45
2387 3561 1.674962 GGCTTGCAGTCAATGATCCTC 59.325 52.381 0.00 0.00 0.00 3.71
2395 3569 2.229792 CAACCTTAGGCTTGCAGTCAA 58.770 47.619 0.00 0.00 0.00 3.18
2435 3609 1.995376 TGAGTTTCAGCCCCCTTTTC 58.005 50.000 0.00 0.00 0.00 2.29
2446 3620 2.038426 TCTTTGAGGGCGATGAGTTTCA 59.962 45.455 0.00 0.00 0.00 2.69
2457 3631 5.105752 CGCATCTACTATATCTTTGAGGGC 58.894 45.833 0.00 0.00 0.00 5.19
2459 3633 7.120579 AGAGACGCATCTACTATATCTTTGAGG 59.879 40.741 0.00 0.00 34.34 3.86
2506 3680 7.855784 TTATGGATCATACCTACTGTGACAT 57.144 36.000 0.00 0.00 0.00 3.06
2521 3695 6.569179 TCATCGAAGTCGTATTATGGATCA 57.431 37.500 0.00 0.00 40.80 2.92
2605 3799 9.902196 CATTTGTACGTACAGTGTGGATATATA 57.098 33.333 26.04 6.18 37.52 0.86
2610 3804 4.890088 ACATTTGTACGTACAGTGTGGAT 58.110 39.130 31.11 17.75 36.32 3.41
2623 3817 7.966111 TGTGGTATGACGATAAACATTTGTAC 58.034 34.615 0.00 0.00 0.00 2.90
2631 3825 8.280497 GGATACAAATGTGGTATGACGATAAAC 58.720 37.037 0.00 0.00 31.84 2.01
2658 3852 5.010213 ACCTATGTACACCGTTGCAATTTTT 59.990 36.000 0.59 0.00 0.00 1.94
2712 3906 4.154015 TGCACATGTACGAGATCTTTTTGG 59.846 41.667 0.00 0.00 0.00 3.28
2736 3930 9.456147 TTTGCAGGTATACACTACATTTAACAT 57.544 29.630 5.01 0.00 0.00 2.71
2741 3935 9.638239 CAAAATTTGCAGGTATACACTACATTT 57.362 29.630 5.01 0.00 0.00 2.32
2808 4002 8.424918 CAGAGGGAGTATAATGTAGACAATTGT 58.575 37.037 11.78 11.78 0.00 2.71
2816 4010 7.724506 TGTAGGAACAGAGGGAGTATAATGTAG 59.275 40.741 0.00 0.00 0.00 2.74
2824 4018 7.889073 GTCATATATGTAGGAACAGAGGGAGTA 59.111 40.741 12.42 0.00 39.49 2.59
2825 4019 6.722129 GTCATATATGTAGGAACAGAGGGAGT 59.278 42.308 12.42 0.00 39.49 3.85
2826 4020 6.127869 CGTCATATATGTAGGAACAGAGGGAG 60.128 46.154 12.42 0.00 39.49 4.30
2827 4021 5.710567 CGTCATATATGTAGGAACAGAGGGA 59.289 44.000 12.42 0.00 39.49 4.20
2828 4022 5.477291 ACGTCATATATGTAGGAACAGAGGG 59.523 44.000 12.42 0.00 39.49 4.30
2829 4023 6.576662 ACGTCATATATGTAGGAACAGAGG 57.423 41.667 12.42 0.00 39.49 3.69
2830 4024 8.755941 CAAAACGTCATATATGTAGGAACAGAG 58.244 37.037 12.42 0.00 39.49 3.35
2831 4025 7.709182 CCAAAACGTCATATATGTAGGAACAGA 59.291 37.037 12.42 0.00 39.49 3.41
2832 4026 7.518370 GCCAAAACGTCATATATGTAGGAACAG 60.518 40.741 12.42 3.20 39.49 3.16
2833 4027 6.259167 GCCAAAACGTCATATATGTAGGAACA 59.741 38.462 12.42 0.00 40.69 3.18
2834 4028 6.259167 TGCCAAAACGTCATATATGTAGGAAC 59.741 38.462 12.42 2.43 0.00 3.62
2835 4029 6.350103 TGCCAAAACGTCATATATGTAGGAA 58.650 36.000 12.42 0.00 0.00 3.36
2836 4030 5.919755 TGCCAAAACGTCATATATGTAGGA 58.080 37.500 12.42 0.00 0.00 2.94
2837 4031 5.758296 ACTGCCAAAACGTCATATATGTAGG 59.242 40.000 12.42 7.68 0.00 3.18
2838 4032 6.844696 ACTGCCAAAACGTCATATATGTAG 57.155 37.500 12.42 9.93 0.00 2.74
2839 4033 7.334671 TCAAACTGCCAAAACGTCATATATGTA 59.665 33.333 12.42 0.00 0.00 2.29
2840 4034 6.150307 TCAAACTGCCAAAACGTCATATATGT 59.850 34.615 12.42 0.00 0.00 2.29
2841 4035 6.550843 TCAAACTGCCAAAACGTCATATATG 58.449 36.000 6.36 6.36 0.00 1.78
2842 4036 6.751514 TCAAACTGCCAAAACGTCATATAT 57.248 33.333 0.00 0.00 0.00 0.86
2843 4037 6.375377 GTTCAAACTGCCAAAACGTCATATA 58.625 36.000 0.00 0.00 0.00 0.86
2844 4038 5.219633 GTTCAAACTGCCAAAACGTCATAT 58.780 37.500 0.00 0.00 0.00 1.78
2845 4039 4.498345 GGTTCAAACTGCCAAAACGTCATA 60.498 41.667 0.00 0.00 0.00 2.15
2846 4040 3.443976 GTTCAAACTGCCAAAACGTCAT 58.556 40.909 0.00 0.00 0.00 3.06
2847 4041 2.416162 GGTTCAAACTGCCAAAACGTCA 60.416 45.455 0.00 0.00 0.00 4.35
2848 4042 2.190161 GGTTCAAACTGCCAAAACGTC 58.810 47.619 0.00 0.00 0.00 4.34
2849 4043 1.468395 CGGTTCAAACTGCCAAAACGT 60.468 47.619 0.00 0.00 0.00 3.99
2850 4044 1.196200 CGGTTCAAACTGCCAAAACG 58.804 50.000 0.00 0.00 0.00 3.60
2858 4052 1.196200 CGTTTTGGCGGTTCAAACTG 58.804 50.000 0.00 0.00 36.49 3.16
2859 4053 0.812549 ACGTTTTGGCGGTTCAAACT 59.187 45.000 0.00 0.00 36.49 2.66
2860 4054 1.193644 GACGTTTTGGCGGTTCAAAC 58.806 50.000 0.00 0.00 36.49 2.93
2861 4055 0.809385 TGACGTTTTGGCGGTTCAAA 59.191 45.000 0.00 0.00 35.15 2.69
2862 4056 1.025812 ATGACGTTTTGGCGGTTCAA 58.974 45.000 0.00 0.00 35.98 2.69
2863 4057 1.880271 TATGACGTTTTGGCGGTTCA 58.120 45.000 0.00 0.00 35.98 3.18
2864 4058 4.806342 ATATATGACGTTTTGGCGGTTC 57.194 40.909 0.00 0.00 35.98 3.62
2865 4059 5.570234 AAATATATGACGTTTTGGCGGTT 57.430 34.783 0.00 0.00 35.98 4.44
2866 4060 5.237779 CCTAAATATATGACGTTTTGGCGGT 59.762 40.000 0.00 0.00 35.98 5.68
2867 4061 5.334569 CCCTAAATATATGACGTTTTGGCGG 60.335 44.000 0.00 0.00 35.98 6.13
2868 4062 5.467399 TCCCTAAATATATGACGTTTTGGCG 59.533 40.000 0.00 0.00 37.94 5.69
2869 4063 6.870971 TCCCTAAATATATGACGTTTTGGC 57.129 37.500 0.00 0.00 0.00 4.52
2870 4064 7.349711 CGTTCCCTAAATATATGACGTTTTGG 58.650 38.462 0.00 0.00 0.00 3.28
2871 4065 7.225145 TCCGTTCCCTAAATATATGACGTTTTG 59.775 37.037 0.00 0.00 0.00 2.44
2872 4066 7.274447 TCCGTTCCCTAAATATATGACGTTTT 58.726 34.615 0.00 0.00 0.00 2.43
2873 4067 6.819284 TCCGTTCCCTAAATATATGACGTTT 58.181 36.000 0.00 0.00 0.00 3.60
2874 4068 6.409524 TCCGTTCCCTAAATATATGACGTT 57.590 37.500 0.00 0.00 0.00 3.99
2875 4069 5.047519 CCTCCGTTCCCTAAATATATGACGT 60.048 44.000 0.00 0.00 0.00 4.34
2876 4070 5.408356 CCTCCGTTCCCTAAATATATGACG 58.592 45.833 0.00 0.00 0.00 4.35
2877 4071 5.482878 TCCCTCCGTTCCCTAAATATATGAC 59.517 44.000 0.00 0.00 0.00 3.06
2878 4072 5.657446 TCCCTCCGTTCCCTAAATATATGA 58.343 41.667 0.00 0.00 0.00 2.15
2879 4073 5.484290 ACTCCCTCCGTTCCCTAAATATATG 59.516 44.000 0.00 0.00 0.00 1.78
2880 4074 5.662597 ACTCCCTCCGTTCCCTAAATATAT 58.337 41.667 0.00 0.00 0.00 0.86
2881 4075 5.083953 ACTCCCTCCGTTCCCTAAATATA 57.916 43.478 0.00 0.00 0.00 0.86
2882 4076 3.937751 ACTCCCTCCGTTCCCTAAATAT 58.062 45.455 0.00 0.00 0.00 1.28
2883 4077 3.409804 ACTCCCTCCGTTCCCTAAATA 57.590 47.619 0.00 0.00 0.00 1.40
2884 4078 2.265526 ACTCCCTCCGTTCCCTAAAT 57.734 50.000 0.00 0.00 0.00 1.40
2885 4079 2.043526 AGTACTCCCTCCGTTCCCTAAA 59.956 50.000 0.00 0.00 0.00 1.85
2886 4080 1.642762 AGTACTCCCTCCGTTCCCTAA 59.357 52.381 0.00 0.00 0.00 2.69
2887 4081 1.302907 AGTACTCCCTCCGTTCCCTA 58.697 55.000 0.00 0.00 0.00 3.53
2888 4082 0.412640 AAGTACTCCCTCCGTTCCCT 59.587 55.000 0.00 0.00 0.00 4.20
2889 4083 0.822811 GAAGTACTCCCTCCGTTCCC 59.177 60.000 0.00 0.00 0.00 3.97
2890 4084 0.822811 GGAAGTACTCCCTCCGTTCC 59.177 60.000 0.00 0.00 38.44 3.62
2891 4085 1.477295 CAGGAAGTACTCCCTCCGTTC 59.523 57.143 0.00 0.00 46.81 3.95
2892 4086 1.203149 ACAGGAAGTACTCCCTCCGTT 60.203 52.381 0.00 0.00 46.81 4.44
2893 4087 0.408700 ACAGGAAGTACTCCCTCCGT 59.591 55.000 0.00 1.12 46.81 4.69
2894 4088 1.558233 AACAGGAAGTACTCCCTCCG 58.442 55.000 0.00 0.51 46.81 4.63
2895 4089 4.776308 TCTAAAACAGGAAGTACTCCCTCC 59.224 45.833 0.00 0.01 46.81 4.30
2896 4090 5.337410 GGTCTAAAACAGGAAGTACTCCCTC 60.337 48.000 0.00 0.00 46.81 4.30
2897 4091 4.531339 GGTCTAAAACAGGAAGTACTCCCT 59.469 45.833 0.00 0.00 46.81 4.20
2898 4092 4.323333 GGGTCTAAAACAGGAAGTACTCCC 60.323 50.000 0.00 0.00 46.81 4.30
2899 4093 4.531339 AGGGTCTAAAACAGGAAGTACTCC 59.469 45.833 0.00 0.00 45.81 3.85
2900 4094 5.741962 AGGGTCTAAAACAGGAAGTACTC 57.258 43.478 0.00 0.00 0.00 2.59
2901 4095 7.622502 TTTAGGGTCTAAAACAGGAAGTACT 57.377 36.000 0.00 0.00 0.00 2.73
2902 4096 7.935755 AGTTTTAGGGTCTAAAACAGGAAGTAC 59.064 37.037 29.21 12.25 45.06 2.73
2905 4099 7.818997 AAGTTTTAGGGTCTAAAACAGGAAG 57.181 36.000 29.21 0.00 45.06 3.46
2929 4123 0.463654 ACTCTTTGTGTGCCGCAGAA 60.464 50.000 0.00 0.00 0.00 3.02
2963 4157 6.389830 TGCAAATGTATAATGTGGGATGTC 57.610 37.500 0.00 0.00 0.00 3.06
2993 4187 8.709308 TGAGTTTTGAAAAGGGAAATCCAATTA 58.291 29.630 1.22 0.00 38.24 1.40
3006 4200 6.744537 CAGTCACACTTCTGAGTTTTGAAAAG 59.255 38.462 0.00 0.00 32.54 2.27
3012 4206 6.817765 TTTTCAGTCACACTTCTGAGTTTT 57.182 33.333 0.00 0.00 40.91 2.43
3071 4265 1.266718 GGTGATTGTTTTCGCTCTGCA 59.733 47.619 0.00 0.00 0.00 4.41
3079 4273 5.253330 TGAGGGATACAGGTGATTGTTTTC 58.747 41.667 0.00 0.00 39.74 2.29
3115 4309 1.686355 AGATGTGAAAACGTGGCCAA 58.314 45.000 7.24 0.00 0.00 4.52
3123 4317 3.643159 AAGCCGGAAAGATGTGAAAAC 57.357 42.857 5.05 0.00 0.00 2.43
3202 4396 4.806330 TGACACTTTAGAGTTCGGACATC 58.194 43.478 0.00 0.00 32.54 3.06
3208 4402 7.085116 AGAACATACTGACACTTTAGAGTTCG 58.915 38.462 0.00 0.00 37.35 3.95
3229 4423 7.856145 AGAACTAACATCCATGATCAAGAAC 57.144 36.000 0.00 0.00 0.00 3.01
3230 4424 8.324306 AGAAGAACTAACATCCATGATCAAGAA 58.676 33.333 0.00 0.00 0.00 2.52
3249 4443 9.710900 ATTGAATACAATTTTTCCCAGAAGAAC 57.289 29.630 0.00 0.00 43.17 3.01
3303 4497 9.833182 GAAAACTTCAGACTTTGGATTAGATTC 57.167 33.333 0.00 0.00 0.00 2.52
3336 4530 3.016031 TGCTCAGCAAAAGAAACACTGA 58.984 40.909 0.00 0.00 34.76 3.41
3340 4534 1.067516 GCCTGCTCAGCAAAAGAAACA 59.932 47.619 0.00 0.00 38.41 2.83
3384 4578 3.157087 GTCCTCTTTCTTCATGGCCAAA 58.843 45.455 10.96 0.00 0.00 3.28
3432 4626 5.742562 AATTTGGATATACCTCCCACCAA 57.257 39.130 0.00 0.00 39.86 3.67
3473 4667 6.753279 GTGTGCTTAACAAATGTGATGCATAT 59.247 34.615 12.93 0.00 40.36 1.78
3478 4672 5.747675 TGTTGTGTGCTTAACAAATGTGATG 59.252 36.000 0.00 0.00 41.57 3.07
3482 4676 5.752955 GGAATGTTGTGTGCTTAACAAATGT 59.247 36.000 0.00 0.00 41.57 2.71
3483 4677 5.107913 CGGAATGTTGTGTGCTTAACAAATG 60.108 40.000 0.00 0.00 41.57 2.32
3485 4679 4.355437 CGGAATGTTGTGTGCTTAACAAA 58.645 39.130 0.00 0.00 41.57 2.83
3488 4682 2.550606 TCCGGAATGTTGTGTGCTTAAC 59.449 45.455 0.00 0.00 0.00 2.01
3498 4692 6.908825 TGATAAAGAAGTTTCCGGAATGTTG 58.091 36.000 19.62 0.00 0.00 3.33
3524 4718 1.278127 GGTTGAAAGGTGATCTCCCGA 59.722 52.381 10.22 0.00 0.00 5.14
3534 4728 4.926832 CACAAAACGAAAAGGTTGAAAGGT 59.073 37.500 0.00 0.00 0.00 3.50
3549 4743 9.124598 CGTAATTGTAATATACGACACAAAACG 57.875 33.333 0.00 0.00 43.71 3.60
3571 4765 4.088923 CGTGTTGAGAAATAACTCGCGTAA 59.911 41.667 5.77 0.00 37.92 3.18
3574 4768 2.659757 TCGTGTTGAGAAATAACTCGCG 59.340 45.455 0.00 0.00 41.82 5.87
3591 4785 1.524621 GGGGGCACATCATCTCGTG 60.525 63.158 0.00 0.00 36.18 4.35
3683 4877 1.208052 CCTGTGCTGCCACTAGTGTAT 59.792 52.381 21.18 0.00 42.54 2.29
3737 4931 9.938280 TCTTTATTTCATATCCAAGGGTATACG 57.062 33.333 0.00 0.00 0.00 3.06
3754 4949 7.806690 TGCACACTTCACAGTATCTTTATTTC 58.193 34.615 0.00 0.00 0.00 2.17
3882 5077 1.412361 CCCCCTGAAGAACCCAAAACA 60.412 52.381 0.00 0.00 0.00 2.83
3883 5078 1.338107 CCCCCTGAAGAACCCAAAAC 58.662 55.000 0.00 0.00 0.00 2.43
3884 5079 0.471022 GCCCCCTGAAGAACCCAAAA 60.471 55.000 0.00 0.00 0.00 2.44
3891 5086 3.774216 CCAAATTTATGCCCCCTGAAGAA 59.226 43.478 0.00 0.00 0.00 2.52
3915 5110 6.463995 AAACACAGCTTCCATAAAACTGAA 57.536 33.333 0.00 0.00 32.67 3.02
3916 5111 6.321181 AGAAAACACAGCTTCCATAAAACTGA 59.679 34.615 0.00 0.00 32.67 3.41
3918 5113 6.715347 AGAAAACACAGCTTCCATAAAACT 57.285 33.333 0.00 0.00 0.00 2.66
3921 5116 7.284489 ACAGTAAGAAAACACAGCTTCCATAAA 59.716 33.333 0.00 0.00 0.00 1.40
3976 5171 0.831711 TCCAGCCACAGTCTGCAGTA 60.832 55.000 14.67 0.00 0.00 2.74
4042 5237 4.202430 ACCCCTTCATAAACGAGAACTGTT 60.202 41.667 0.00 0.00 0.00 3.16
4137 5332 6.204882 AGTTACAAGCACAGACCAATCTAAAC 59.795 38.462 0.00 0.00 32.25 2.01
4148 5343 8.445275 TTCAAGAAATAAGTTACAAGCACAGA 57.555 30.769 0.00 0.00 0.00 3.41
4151 5346 7.594758 TGCATTCAAGAAATAAGTTACAAGCAC 59.405 33.333 0.00 0.00 0.00 4.40
4154 5349 9.683069 AGTTGCATTCAAGAAATAAGTTACAAG 57.317 29.630 0.00 0.00 31.93 3.16
4224 5419 4.061357 TGTCACTCCGTATTTGTCAACA 57.939 40.909 0.00 0.00 0.00 3.33
4278 5473 1.723870 GGAACCATCACGCATGAGC 59.276 57.895 0.00 0.00 38.57 4.26
4342 5539 1.335689 ACCACTTAACTGACGACGAGC 60.336 52.381 0.00 0.00 0.00 5.03
4349 5546 2.802816 CTCAGTGCACCACTTAACTGAC 59.197 50.000 14.63 0.00 42.59 3.51
4366 5563 1.538950 GGAAAAGAAGTGCTGCCTCAG 59.461 52.381 0.00 0.00 34.12 3.35
4402 5600 3.875125 AGAAAAAGCTTCCCGGTAGATC 58.125 45.455 0.00 0.00 0.00 2.75
4444 5642 3.332919 TGTTGCGCCATTATTTTGCAAT 58.667 36.364 4.18 0.00 45.95 3.56
4459 5657 2.009051 TCTGGAGCATATGTTGTTGCG 58.991 47.619 4.29 0.00 43.61 4.85
4477 5675 6.644592 GCAGACATTATTAGAGATTTCGCTCT 59.355 38.462 0.00 0.00 46.47 4.09
4623 5825 2.224450 ACCCACACTTCCTAAAACTCGG 60.224 50.000 0.00 0.00 0.00 4.63
4685 5887 4.616802 CGCGTTGCAATTTTGAGACTAAAT 59.383 37.500 0.59 0.00 0.00 1.40
4686 5888 3.971871 CGCGTTGCAATTTTGAGACTAAA 59.028 39.130 0.59 0.00 0.00 1.85
4694 5896 4.663970 CCTTTTAAACGCGTTGCAATTTTG 59.336 37.500 27.34 10.77 0.00 2.44
4700 5902 1.671845 AGACCTTTTAAACGCGTTGCA 59.328 42.857 27.34 14.04 0.00 4.08
4701 5903 2.394545 AGACCTTTTAAACGCGTTGC 57.605 45.000 27.34 7.98 0.00 4.17
4705 5907 3.844099 GCATGTAAGACCTTTTAAACGCG 59.156 43.478 3.53 3.53 0.00 6.01
4711 5913 8.630054 AACAATAGTGCATGTAAGACCTTTTA 57.370 30.769 0.00 0.00 0.00 1.52
5164 6366 4.433615 AGCATTACAGTTCGATTCGACAT 58.566 39.130 8.55 0.00 34.89 3.06
5168 6370 6.307155 AGAAAAAGCATTACAGTTCGATTCG 58.693 36.000 0.00 0.00 0.00 3.34
5188 6390 9.280174 CAGGTAAAGGTGTAATCTAACAAGAAA 57.720 33.333 0.00 0.00 0.00 2.52
5290 6499 7.978099 AAGCAAGAGGGGTAATGAAATTTAT 57.022 32.000 0.00 0.00 37.87 1.40
5291 6500 7.234577 ACAAAGCAAGAGGGGTAATGAAATTTA 59.765 33.333 0.00 0.00 37.87 1.40
5294 6503 5.086621 ACAAAGCAAGAGGGGTAATGAAAT 58.913 37.500 0.00 0.00 0.00 2.17
5311 6520 4.324402 GCATGTGCACAGTAATTACAAAGC 59.676 41.667 25.84 16.20 41.59 3.51
5362 6573 2.892640 GGCATTTCCCGCCCTTTC 59.107 61.111 0.00 0.00 44.22 2.62
5378 6589 0.758734 TATCCACTGCATTCTCCGGG 59.241 55.000 0.00 0.00 0.00 5.73
5380 6591 1.414181 AGGTATCCACTGCATTCTCCG 59.586 52.381 0.00 0.00 0.00 4.63
5533 6744 8.233868 AGTTTTGGCCGAAATTTAAATAAATGC 58.766 29.630 21.20 3.83 36.14 3.56
5546 6757 4.457834 TTTGAAGAAGTTTTGGCCGAAA 57.542 36.364 14.56 14.56 0.00 3.46
5549 6760 4.808364 TCAATTTTGAAGAAGTTTTGGCCG 59.192 37.500 0.00 0.00 33.55 6.13
5566 6777 3.463048 ACCAGCAATCCTCCTCAATTT 57.537 42.857 0.00 0.00 0.00 1.82
5573 6784 1.139853 CCAGACTACCAGCAATCCTCC 59.860 57.143 0.00 0.00 0.00 4.30
5582 6793 7.921786 TCACATTTTTATTCCAGACTACCAG 57.078 36.000 0.00 0.00 0.00 4.00
5584 6795 7.556275 TGGATCACATTTTTATTCCAGACTACC 59.444 37.037 0.00 0.00 0.00 3.18
5598 6809 8.805175 TGAACATGTAATTCTGGATCACATTTT 58.195 29.630 0.00 0.00 0.00 1.82
5630 6841 9.703892 TCCCTGACACACAAATTTAATTTATTG 57.296 29.630 2.37 6.21 0.00 1.90
5633 6844 8.239038 TGTCCCTGACACACAAATTTAATTTA 57.761 30.769 2.37 0.00 37.67 1.40
5718 6929 7.636259 TTAATTTCAATTCAAAGGAAGCGTG 57.364 32.000 0.00 0.00 36.25 5.34
5719 6930 9.573133 CTATTAATTTCAATTCAAAGGAAGCGT 57.427 29.630 0.00 0.00 36.25 5.07
5742 6973 5.267587 AGCCTTTTTCTTGAAGCCATCTAT 58.732 37.500 0.00 0.00 0.00 1.98
5872 7103 3.500448 TGGTCTATTCCAACAACAGCA 57.500 42.857 0.00 0.00 34.24 4.41
5923 7154 5.936956 GGTTATGATATGGAGCCAGAAAGAG 59.063 44.000 0.00 0.00 0.00 2.85
5995 7226 3.782656 TCCCTGACCTTTAACCTGAAC 57.217 47.619 0.00 0.00 0.00 3.18
6172 7409 2.047655 CGGAGCCGTTGTTAGCCA 60.048 61.111 0.00 0.00 34.35 4.75
6441 7678 1.985473 TCTTGTCAGGTGCTGCAAAT 58.015 45.000 2.77 0.00 31.36 2.32
6576 7813 3.238497 TGGTCGACCACACCAGGG 61.238 66.667 33.23 0.00 42.01 4.45
6663 7900 4.214119 CGAGGCAAGAAAGAAAATGAGACA 59.786 41.667 0.00 0.00 0.00 3.41
6909 8154 5.102953 TCCAAACCTCAATATCCACTCAG 57.897 43.478 0.00 0.00 0.00 3.35
6929 8174 2.943036 TACACAAGTGGGGAAACTCC 57.057 50.000 5.08 0.00 35.23 3.85
6930 8175 7.336396 AGTAATATACACAAGTGGGGAAACTC 58.664 38.462 5.08 0.00 34.19 3.01
6931 8176 7.037873 TGAGTAATATACACAAGTGGGGAAACT 60.038 37.037 5.08 1.40 34.19 2.66
6932 8177 7.107542 TGAGTAATATACACAAGTGGGGAAAC 58.892 38.462 5.08 0.00 34.19 2.78
6936 8181 7.415206 GCTTTTGAGTAATATACACAAGTGGGG 60.415 40.741 5.08 0.00 39.68 4.96
6937 8182 7.415206 GGCTTTTGAGTAATATACACAAGTGGG 60.415 40.741 5.08 0.00 39.68 4.61
6938 8183 7.415206 GGGCTTTTGAGTAATATACACAAGTGG 60.415 40.741 5.08 0.00 39.68 4.00
6939 8184 7.336931 AGGGCTTTTGAGTAATATACACAAGTG 59.663 37.037 0.00 0.00 39.68 3.16
6941 8186 7.552687 TGAGGGCTTTTGAGTAATATACACAAG 59.447 37.037 0.00 0.00 39.68 3.16
6943 8188 6.953101 TGAGGGCTTTTGAGTAATATACACA 58.047 36.000 0.00 0.00 0.00 3.72
6946 8191 7.497925 CCTTGAGGGCTTTTGAGTAATATAC 57.502 40.000 0.00 0.00 0.00 1.47
6963 8569 4.322801 CCTGTACTTCTGTAACCCTTGAGG 60.323 50.000 0.00 0.00 43.78 3.86
6969 8575 2.005560 GCGCCTGTACTTCTGTAACCC 61.006 57.143 0.00 0.00 0.00 4.11
6979 8585 1.004918 GTGTCTTGGCGCCTGTACT 60.005 57.895 29.70 0.00 0.00 2.73
6993 8599 1.079336 GTAGGGAGGTTGCCGTGTC 60.079 63.158 0.00 0.00 30.73 3.67
6994 8600 1.125711 AAGTAGGGAGGTTGCCGTGT 61.126 55.000 0.00 0.00 30.73 4.49
7013 8619 2.241281 TCAGATTCAAGGACCCCGTA 57.759 50.000 0.00 0.00 0.00 4.02
7017 8623 1.683319 GCCCTTCAGATTCAAGGACCC 60.683 57.143 4.70 0.00 42.94 4.46
7019 8625 1.004745 TGGCCCTTCAGATTCAAGGAC 59.995 52.381 0.00 0.00 42.94 3.85
7025 8631 0.453390 CGCTTTGGCCCTTCAGATTC 59.547 55.000 0.00 0.00 34.44 2.52
7031 8637 2.416836 GGATTTTACGCTTTGGCCCTTC 60.417 50.000 0.00 0.00 34.44 3.46
7036 8642 3.569250 TCTTGGATTTTACGCTTTGGC 57.431 42.857 0.00 0.00 0.00 4.52
7087 8693 2.513897 GCCCGTGCCTTTCGCTAT 60.514 61.111 0.00 0.00 38.78 2.97
7097 8710 1.648467 GACTCCAGAAATGCCCGTGC 61.648 60.000 0.00 0.00 38.26 5.34
7157 8770 1.929836 GATCAGCCTCGACATCAACAC 59.070 52.381 0.00 0.00 0.00 3.32
7193 8806 2.234908 CTCACTCCATCGACCTCCTTTT 59.765 50.000 0.00 0.00 0.00 2.27
7250 8888 2.053865 CCATTCATTGCCCCTGCGT 61.054 57.895 0.00 0.00 41.78 5.24
7337 8975 1.795872 CACGTTGGCGAACTTACATCA 59.204 47.619 10.01 0.00 42.00 3.07
7353 8991 1.375140 CATGACAGGCTGAGCACGT 60.375 57.895 23.66 1.49 0.00 4.49
7501 9273 1.198759 ACCACAGGTTACTCGCCCAT 61.199 55.000 0.00 0.00 27.29 4.00
7510 9282 4.382320 GCGCCCGACCACAGGTTA 62.382 66.667 0.00 0.00 35.25 2.85
7547 9319 1.587946 GCCTGTTTTGTCTTTGTTGCG 59.412 47.619 0.00 0.00 0.00 4.85
7576 9348 3.795877 CCAAACCAATGTTGCTTCTGTT 58.204 40.909 0.00 0.00 34.13 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.