Multiple sequence alignment - TraesCS2B01G307000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G307000 chr2B 100.000 4099 0 0 1 4099 439228387 439224289 0.000000e+00 7570
1 TraesCS2B01G307000 chr2D 95.731 2764 80 11 1 2735 369484519 369481765 0.000000e+00 4416
2 TraesCS2B01G307000 chr2D 88.326 1422 80 27 2732 4099 369481731 369480342 0.000000e+00 1628
3 TraesCS2B01G307000 chr2A 95.202 2772 83 14 1 2735 500534945 500532187 0.000000e+00 4337
4 TraesCS2B01G307000 chr2A 89.132 1141 72 17 2732 3843 500532153 500531036 0.000000e+00 1373
5 TraesCS2B01G307000 chr2A 93.220 236 6 3 3869 4099 500531043 500530813 5.080000e-89 339
6 TraesCS2B01G307000 chr4A 93.769 658 36 4 1335 1988 564748298 564747642 0.000000e+00 983
7 TraesCS2B01G307000 chr7B 92.537 670 46 2 1319 1988 443642860 443643525 0.000000e+00 957
8 TraesCS2B01G307000 chr6A 93.142 627 41 1 1335 1961 449825189 449824565 0.000000e+00 918
9 TraesCS2B01G307000 chr6A 90.855 667 44 8 1335 1988 22029326 22029988 0.000000e+00 878
10 TraesCS2B01G307000 chr4B 90.601 383 29 3 1319 1694 605164390 605164008 6.120000e-138 501
11 TraesCS2B01G307000 chr4B 91.912 136 10 1 1853 1988 605164008 605163874 5.410000e-44 189


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G307000 chr2B 439224289 439228387 4098 True 7570.000000 7570 100.0000 1 4099 1 chr2B.!!$R1 4098
1 TraesCS2B01G307000 chr2D 369480342 369484519 4177 True 3022.000000 4416 92.0285 1 4099 2 chr2D.!!$R1 4098
2 TraesCS2B01G307000 chr2A 500530813 500534945 4132 True 2016.333333 4337 92.5180 1 4099 3 chr2A.!!$R1 4098
3 TraesCS2B01G307000 chr4A 564747642 564748298 656 True 983.000000 983 93.7690 1335 1988 1 chr4A.!!$R1 653
4 TraesCS2B01G307000 chr7B 443642860 443643525 665 False 957.000000 957 92.5370 1319 1988 1 chr7B.!!$F1 669
5 TraesCS2B01G307000 chr6A 449824565 449825189 624 True 918.000000 918 93.1420 1335 1961 1 chr6A.!!$R1 626
6 TraesCS2B01G307000 chr6A 22029326 22029988 662 False 878.000000 878 90.8550 1335 1988 1 chr6A.!!$F1 653
7 TraesCS2B01G307000 chr4B 605163874 605164390 516 True 345.000000 501 91.2565 1319 1988 2 chr4B.!!$R1 669

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
214 215 1.067213 GTTCCTCTGCAGAGTCCTGAC 60.067 57.143 35.47 23.09 43.02 3.51 F
538 552 3.558418 GTCAAACTGGTGCTTTCTCGTTA 59.442 43.478 0.00 0.00 0.00 3.18 F
1530 1580 2.038659 GCTGCTGGAGAGGATAGAGTT 58.961 52.381 0.00 0.00 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1254 1292 5.981088 TGCATATATTTGTATTGGCCAGG 57.019 39.130 5.11 0.0 0.00 4.45 R
2357 2417 2.800544 ACAACAAACAGATCGTCTTCCG 59.199 45.455 0.00 0.0 38.13 4.30 R
3282 3391 0.446222 GCGTGCAGAATTAAGCGGAA 59.554 50.000 0.00 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 1.084289 GCGGCGAAGTTCATAAACCT 58.916 50.000 12.98 0.00 35.92 3.50
214 215 1.067213 GTTCCTCTGCAGAGTCCTGAC 60.067 57.143 35.47 23.09 43.02 3.51
384 393 7.122799 GGAAACACTCTCCAAATATTAAAGGCT 59.877 37.037 0.00 0.00 32.77 4.58
462 476 4.986034 TCACATAGTGGTTGTTTGTAGTCG 59.014 41.667 0.00 0.00 33.87 4.18
538 552 3.558418 GTCAAACTGGTGCTTTCTCGTTA 59.442 43.478 0.00 0.00 0.00 3.18
640 672 9.490379 AGACCAAAGTACTTATCAACTACAAAG 57.510 33.333 8.92 0.00 0.00 2.77
679 712 3.819564 TCAATTACATCACCTCCCTCG 57.180 47.619 0.00 0.00 0.00 4.63
857 895 7.475137 TGTATTTAGCTAATGGTTTGGCTTT 57.525 32.000 7.08 0.00 46.33 3.51
944 982 5.240891 TGAGTAAGCATCAGAACCTCAAAG 58.759 41.667 0.00 0.00 0.00 2.77
981 1019 8.094798 CAGCAATATTATACCGTTATTGGTGT 57.905 34.615 18.68 0.18 46.49 4.16
1155 1193 5.302059 CCCTCTTGAAAATGATGAGCATGAT 59.698 40.000 0.00 0.00 37.28 2.45
1194 1232 5.079643 AGGTTTGAAACTAATGCCATGACT 58.920 37.500 8.09 0.00 0.00 3.41
1530 1580 2.038659 GCTGCTGGAGAGGATAGAGTT 58.961 52.381 0.00 0.00 0.00 3.01
2247 2307 5.313712 ACTAATACCCATGCTTTAATCCCG 58.686 41.667 0.00 0.00 0.00 5.14
2283 2343 2.061509 TCAATGATGCACTCATGGGG 57.938 50.000 10.96 6.12 44.03 4.96
2357 2417 3.555956 CACACACTGAGTCACAAGGTTAC 59.444 47.826 0.00 0.00 0.00 2.50
2397 2457 1.214589 GCTTGGCAGTGATGGCTTG 59.785 57.895 0.00 0.00 35.21 4.01
2411 2471 5.403466 GTGATGGCTTGTTTGATTTCTTCAC 59.597 40.000 0.00 0.00 32.84 3.18
2415 2475 7.288810 TGGCTTGTTTGATTTCTTCACTAAT 57.711 32.000 0.00 0.00 32.84 1.73
2439 2499 6.791303 TGATGAAGTTGTTCAGTTGGTTTAC 58.209 36.000 0.00 0.00 45.96 2.01
2487 2547 4.217118 GGCGATCCTGCAAAATATCTCATT 59.783 41.667 0.00 0.00 36.28 2.57
2530 2590 1.410224 CCAAAGAAGCAGGTATCCCCC 60.410 57.143 0.00 0.00 0.00 5.40
2531 2591 1.566231 CAAAGAAGCAGGTATCCCCCT 59.434 52.381 0.00 0.00 34.21 4.79
2533 2593 2.889522 AGAAGCAGGTATCCCCCTAA 57.110 50.000 0.00 0.00 32.08 2.69
2534 2594 3.145559 AGAAGCAGGTATCCCCCTAAA 57.854 47.619 0.00 0.00 32.08 1.85
2535 2595 3.681311 AGAAGCAGGTATCCCCCTAAAT 58.319 45.455 0.00 0.00 32.08 1.40
2663 2724 7.391833 GCCTTTCTCATGTTATAATAGGAAGGG 59.608 40.741 19.01 16.28 41.47 3.95
2669 2730 9.930693 CTCATGTTATAATAGGAAGGGAAGTAC 57.069 37.037 0.00 0.00 0.00 2.73
2705 2766 5.276461 TGTCAAGTGAGTAAAAGCTCTGA 57.724 39.130 0.00 0.00 36.51 3.27
2718 2779 8.254508 AGTAAAAGCTCTGAGATACCAAGTAAG 58.745 37.037 9.28 0.00 0.00 2.34
2723 2784 5.128008 GCTCTGAGATACCAAGTAAGAACCT 59.872 44.000 9.28 0.00 0.00 3.50
2803 2904 9.470399 AGATTTTAGCCATGCATATATCATGAA 57.530 29.630 18.81 10.20 42.84 2.57
2829 2930 7.966246 ATAACATCAGATGAGAATGAAGAGC 57.034 36.000 17.81 0.00 0.00 4.09
2832 2933 4.831674 TCAGATGAGAATGAAGAGCCAA 57.168 40.909 0.00 0.00 0.00 4.52
2844 2945 5.363562 TGAAGAGCCAATATGTGTGAGAT 57.636 39.130 0.00 0.00 0.00 2.75
2854 2955 8.840321 GCCAATATGTGTGAGATTACATTTACT 58.160 33.333 0.00 0.00 38.41 2.24
2949 3057 6.514063 AGAACTAACACCAACTCTTCACTAC 58.486 40.000 0.00 0.00 0.00 2.73
2956 3064 5.817816 ACACCAACTCTTCACTACTTTCTTG 59.182 40.000 0.00 0.00 0.00 3.02
2990 3098 2.650608 GCTTTAACAGCCGAACAGTTG 58.349 47.619 0.00 0.00 43.65 3.16
3014 3122 1.204146 GGATACCTGTTGGGAGCAGA 58.796 55.000 0.00 0.00 33.23 4.26
3032 3140 4.081420 AGCAGAAGAAAGTACCATGACGAT 60.081 41.667 0.00 0.00 0.00 3.73
3106 3215 5.319140 TCAACTTCGATATGAAAGACGGA 57.681 39.130 0.00 0.00 35.79 4.69
3199 3308 9.391006 GGTTCTGGTGTGATAGTCAATAATAAA 57.609 33.333 0.00 0.00 0.00 1.40
3237 3346 7.979537 GTGTATATCCTTTGGAAATTTTGGGTC 59.020 37.037 0.00 0.00 34.34 4.46
3274 3383 3.357203 TGTTAAGTCAAAAGGTGCACCA 58.643 40.909 36.39 14.05 38.89 4.17
3281 3390 3.630312 GTCAAAAGGTGCACCAAGACTTA 59.370 43.478 36.39 13.36 38.89 2.24
3282 3391 4.278419 GTCAAAAGGTGCACCAAGACTTAT 59.722 41.667 36.39 11.61 38.89 1.73
3378 3504 1.028130 TCAGCTCTCATGACCTAGCG 58.972 55.000 12.09 8.74 39.94 4.26
3379 3505 0.743688 CAGCTCTCATGACCTAGCGT 59.256 55.000 12.09 2.15 39.94 5.07
3380 3506 0.743688 AGCTCTCATGACCTAGCGTG 59.256 55.000 12.09 0.00 39.94 5.34
3385 3511 4.068599 CTCTCATGACCTAGCGTGATCTA 58.931 47.826 0.00 0.00 33.65 1.98
3414 3540 8.599774 GTGAAGCTTTACTGATCTGAAGATAAC 58.400 37.037 13.77 0.00 34.37 1.89
3423 3549 7.628234 ACTGATCTGAAGATAACATGGAAACT 58.372 34.615 6.60 0.00 34.37 2.66
3434 3560 3.736094 ACATGGAAACTGGGAGAGGATA 58.264 45.455 0.00 0.00 0.00 2.59
3445 3571 7.084268 ACTGGGAGAGGATATATGAAAAAGG 57.916 40.000 0.00 0.00 0.00 3.11
3449 3575 6.306987 GGAGAGGATATATGAAAAAGGCCAA 58.693 40.000 5.01 0.00 0.00 4.52
3450 3576 6.777580 GGAGAGGATATATGAAAAAGGCCAAA 59.222 38.462 5.01 0.00 0.00 3.28
3451 3577 7.040132 GGAGAGGATATATGAAAAAGGCCAAAG 60.040 40.741 5.01 0.00 0.00 2.77
3452 3578 6.779539 AGAGGATATATGAAAAAGGCCAAAGG 59.220 38.462 5.01 0.00 0.00 3.11
3475 3602 3.244561 CCAGTCTAATGTGTTGGTCCTGT 60.245 47.826 0.00 0.00 0.00 4.00
3509 3644 0.521242 GCATTTGCTTAGCGACCACG 60.521 55.000 0.00 0.00 39.24 4.94
3534 3669 0.403750 TTTTGTGGTAGGGGAGGGGT 60.404 55.000 0.00 0.00 0.00 4.95
3535 3670 1.137594 TTTGTGGTAGGGGAGGGGTG 61.138 60.000 0.00 0.00 0.00 4.61
3536 3671 2.691252 GTGGTAGGGGAGGGGTGG 60.691 72.222 0.00 0.00 0.00 4.61
3537 3672 4.033251 TGGTAGGGGAGGGGTGGG 62.033 72.222 0.00 0.00 0.00 4.61
3578 3713 4.973168 TCACACAAGCTACCAATCTTTCT 58.027 39.130 0.00 0.00 0.00 2.52
3622 3757 4.389374 GTTTCTGATCAACTTCCCTGTCA 58.611 43.478 0.00 0.00 0.00 3.58
3693 3828 0.892358 CTCTGCCAATGCACACCACT 60.892 55.000 0.00 0.00 44.23 4.00
3699 3834 2.417243 GCCAATGCACACCACTAATTCC 60.417 50.000 0.00 0.00 37.47 3.01
3700 3835 3.091545 CCAATGCACACCACTAATTCCT 58.908 45.455 0.00 0.00 0.00 3.36
3704 3839 2.371841 TGCACACCACTAATTCCTGAGT 59.628 45.455 0.00 0.00 0.00 3.41
3757 3902 4.112634 CAATTCTGGCGAGTCTCGATTAA 58.887 43.478 26.11 13.13 43.74 1.40
3758 3903 3.422417 TTCTGGCGAGTCTCGATTAAG 57.578 47.619 26.11 15.12 43.74 1.85
3806 3951 4.746535 ATGGGTATCGTCACAATACACA 57.253 40.909 0.00 0.00 44.69 3.72
3830 3978 2.708325 AGTGAAAGAGAGAAAGCCCTGT 59.292 45.455 0.00 0.00 0.00 4.00
3859 4007 0.249398 GCTTTCCCCGTAAGCAGAGA 59.751 55.000 0.00 0.00 45.64 3.10
3951 4099 2.134346 TCGGCAAGCATTTCTTTTTGC 58.866 42.857 0.00 0.00 43.81 3.68
4007 4155 3.049674 GCTTGCGTGCTGTGCCTA 61.050 61.111 0.00 0.00 0.00 3.93
4059 4212 2.688958 GGCTTGAGACCAGTCGTAGTAT 59.311 50.000 0.00 0.00 34.09 2.12
4060 4213 3.881688 GGCTTGAGACCAGTCGTAGTATA 59.118 47.826 0.00 0.00 34.09 1.47
4061 4214 4.337555 GGCTTGAGACCAGTCGTAGTATAA 59.662 45.833 0.00 0.00 34.09 0.98
4089 4242 0.535102 CCCTTCCTCTGCGTTTGTGT 60.535 55.000 0.00 0.00 0.00 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 120 9.838339 TGAAGTGAGAAGGGATTATTTCTATTC 57.162 33.333 0.00 0.00 33.97 1.75
191 192 1.346068 AGGACTCTGCAGAGGAACAAC 59.654 52.381 39.42 24.26 46.13 3.32
238 239 4.894556 GCCGTTACGTTATTATTTTCGCTC 59.105 41.667 3.52 0.00 0.00 5.03
321 330 1.299089 CGATAGGACGCGCATGTCA 60.299 57.895 15.80 0.00 40.72 3.58
330 339 1.002684 GCTACCACAGACGATAGGACG 60.003 57.143 0.00 0.00 43.77 4.79
462 476 9.955208 TTGTGCATTCTCATGAATATTTATCAC 57.045 29.630 0.00 0.00 40.61 3.06
538 552 3.949754 CAGGGACATACATGCTGTGAATT 59.050 43.478 6.27 0.00 0.00 2.17
612 644 8.418597 TGTAGTTGATAAGTACTTTGGTCTCT 57.581 34.615 14.49 13.19 38.00 3.10
746 781 9.606631 AAATTAAAACTTGTTTCAGCAATACCA 57.393 25.926 0.00 0.00 0.00 3.25
857 895 3.961849 TGCAAACCAGACCTGCAATATA 58.038 40.909 0.00 0.00 42.84 0.86
916 954 5.564550 AGGTTCTGATGCTTACTCAAATGT 58.435 37.500 0.00 0.00 0.00 2.71
944 982 3.874392 ATATTGCTGACAAACTTGGCC 57.126 42.857 0.00 0.00 39.77 5.36
981 1019 6.127054 CCACCATCTTCTCTATGGAAGTGTTA 60.127 42.308 9.02 0.00 45.77 2.41
1194 1232 6.170506 AGTAAATGAGCCATTTCGTGACTTA 58.829 36.000 14.07 0.00 42.19 2.24
1254 1292 5.981088 TGCATATATTTGTATTGGCCAGG 57.019 39.130 5.11 0.00 0.00 4.45
2220 2280 9.138596 GGGATTAAAGCATGGGTATTAGTTAAA 57.861 33.333 0.00 0.00 0.00 1.52
2230 2290 3.312736 AATCGGGATTAAAGCATGGGT 57.687 42.857 0.00 0.00 0.00 4.51
2247 2307 7.532884 GCATCATTGAACTTTTTCTGCAAAATC 59.467 33.333 0.00 0.00 33.73 2.17
2283 2343 5.724223 GCACAAATTACGAACTCGGAGAATC 60.724 44.000 12.86 8.56 44.95 2.52
2357 2417 2.800544 ACAACAAACAGATCGTCTTCCG 59.199 45.455 0.00 0.00 38.13 4.30
2411 2471 7.206981 ACCAACTGAACAACTTCATCATTAG 57.793 36.000 0.00 0.00 35.78 1.73
2415 2475 5.913137 AAACCAACTGAACAACTTCATCA 57.087 34.783 0.00 0.00 35.78 3.07
2439 2499 7.601130 CCAGTTGGATTATCATGCATAAATTGG 59.399 37.037 0.00 1.09 37.39 3.16
2487 2547 4.083324 GCAGCTTTATGTACAACTTGCTCA 60.083 41.667 0.00 0.00 0.00 4.26
2636 2697 7.939039 CCTTCCTATTATAACATGAGAAAGGCA 59.061 37.037 0.00 0.00 0.00 4.75
2637 2698 7.391833 CCCTTCCTATTATAACATGAGAAAGGC 59.608 40.741 0.00 0.00 0.00 4.35
2705 2766 8.147244 ACATGTTAGGTTCTTACTTGGTATCT 57.853 34.615 0.00 0.00 0.00 1.98
2718 2779 8.051901 ACAAGCCTATAAAACATGTTAGGTTC 57.948 34.615 20.99 9.64 34.84 3.62
2803 2904 8.838365 GCTCTTCATTCTCATCTGATGTTATTT 58.162 33.333 16.66 0.00 0.00 1.40
2875 2976 4.332828 AGGGTTGCAAAGATGGTAGTTAC 58.667 43.478 0.00 0.00 0.00 2.50
2877 2978 3.525800 AGGGTTGCAAAGATGGTAGTT 57.474 42.857 0.00 0.00 0.00 2.24
2878 2979 3.525800 AAGGGTTGCAAAGATGGTAGT 57.474 42.857 0.00 0.00 0.00 2.73
2879 2980 4.559153 CAAAAGGGTTGCAAAGATGGTAG 58.441 43.478 0.00 0.00 0.00 3.18
2926 3034 6.514063 AGTAGTGAAGAGTTGGTGTTAGTTC 58.486 40.000 0.00 0.00 0.00 3.01
2949 3057 1.820519 TGGCAAGGCATAGCAAGAAAG 59.179 47.619 0.00 0.00 0.00 2.62
2956 3064 1.392589 TAAAGCTGGCAAGGCATAGC 58.607 50.000 1.37 8.15 39.41 2.97
2981 3089 4.115516 CAGGTATCCTCATCAACTGTTCG 58.884 47.826 0.00 0.00 0.00 3.95
2988 3096 3.455910 CTCCCAACAGGTATCCTCATCAA 59.544 47.826 0.00 0.00 36.75 2.57
2990 3098 2.224402 GCTCCCAACAGGTATCCTCATC 60.224 54.545 0.00 0.00 36.75 2.92
3014 3122 4.929808 GTCACATCGTCATGGTACTTTCTT 59.070 41.667 0.00 0.00 33.82 2.52
3032 3140 6.053632 AGGATGATAACAATGACAGTCACA 57.946 37.500 5.05 0.00 0.00 3.58
3106 3215 2.094286 CACAGCCTCTTCTTGAGATCGT 60.094 50.000 0.00 0.00 45.39 3.73
3137 3246 4.927978 TGTCCTAACACCCACAAAATTG 57.072 40.909 0.00 0.00 0.00 2.32
3237 3346 8.251750 TGACTTAACAAAAGATATCTGTTCGG 57.748 34.615 5.86 0.00 35.09 4.30
3274 3383 5.880332 TGCAGAATTAAGCGGAATAAGTCTT 59.120 36.000 0.00 0.00 36.02 3.01
3281 3390 1.064060 GCGTGCAGAATTAAGCGGAAT 59.936 47.619 0.00 0.00 0.00 3.01
3282 3391 0.446222 GCGTGCAGAATTAAGCGGAA 59.554 50.000 0.00 0.00 0.00 4.30
3378 3504 6.341316 TCAGTAAAGCTTCACCATAGATCAC 58.659 40.000 0.00 0.00 0.00 3.06
3379 3505 6.544928 TCAGTAAAGCTTCACCATAGATCA 57.455 37.500 0.00 0.00 0.00 2.92
3380 3506 7.384660 CAGATCAGTAAAGCTTCACCATAGATC 59.615 40.741 0.00 6.69 0.00 2.75
3385 3511 5.426689 TCAGATCAGTAAAGCTTCACCAT 57.573 39.130 0.00 0.00 0.00 3.55
3414 3540 4.989875 ATATCCTCTCCCAGTTTCCATG 57.010 45.455 0.00 0.00 0.00 3.66
3423 3549 5.222130 GGCCTTTTTCATATATCCTCTCCCA 60.222 44.000 0.00 0.00 0.00 4.37
3449 3575 2.108250 ACCAACACATTAGACTGGCCTT 59.892 45.455 3.32 0.00 0.00 4.35
3450 3576 1.705186 ACCAACACATTAGACTGGCCT 59.295 47.619 3.32 0.00 0.00 5.19
3451 3577 2.084546 GACCAACACATTAGACTGGCC 58.915 52.381 0.00 0.00 0.00 5.36
3452 3578 2.084546 GGACCAACACATTAGACTGGC 58.915 52.381 0.00 0.00 0.00 4.85
3453 3579 3.244561 ACAGGACCAACACATTAGACTGG 60.245 47.826 0.00 0.00 0.00 4.00
3454 3580 4.008074 ACAGGACCAACACATTAGACTG 57.992 45.455 0.00 0.00 0.00 3.51
3461 3587 3.297134 AACTCAACAGGACCAACACAT 57.703 42.857 0.00 0.00 0.00 3.21
3509 3644 1.422402 TCCCCTACCACAAAACACCTC 59.578 52.381 0.00 0.00 0.00 3.85
3517 3652 1.540367 CACCCCTCCCCTACCACAA 60.540 63.158 0.00 0.00 0.00 3.33
3534 3669 1.281867 GTGACCAGGATTCATCACCCA 59.718 52.381 0.00 0.00 36.31 4.51
3535 3670 1.281867 TGTGACCAGGATTCATCACCC 59.718 52.381 0.00 0.00 40.63 4.61
3536 3671 2.787473 TGTGACCAGGATTCATCACC 57.213 50.000 0.00 0.00 40.63 4.02
3537 3672 3.877559 TGATGTGACCAGGATTCATCAC 58.122 45.455 15.69 9.57 39.53 3.06
3578 3713 9.391006 GAAACCACAATAAATACTGGAGATGTA 57.609 33.333 0.00 0.00 0.00 2.29
3594 3729 4.524328 GGGAAGTTGATCAGAAACCACAAT 59.476 41.667 0.00 0.00 0.00 2.71
3622 3757 1.980772 GCTCTTGGGGCAATGCAGT 60.981 57.895 7.79 0.00 0.00 4.40
3743 3888 2.605097 GGGTAGCTTAATCGAGACTCGC 60.605 54.545 20.11 4.85 40.21 5.03
3757 3902 3.904339 TCTCTTCTTGTGAAAGGGTAGCT 59.096 43.478 0.00 0.00 0.00 3.32
3758 3903 3.997681 GTCTCTTCTTGTGAAAGGGTAGC 59.002 47.826 0.00 0.00 0.00 3.58
3806 3951 3.650461 AGGGCTTTCTCTCTTTCACTCTT 59.350 43.478 0.00 0.00 0.00 2.85
3830 3978 5.472137 GCTTACGGGGAAAGCAATAATCATA 59.528 40.000 3.07 0.00 46.85 2.15
3920 4068 1.982073 GCTTGCCGAAAGACGATGGG 61.982 60.000 0.00 0.00 45.77 4.00
4059 4212 3.436470 GCAGAGGAAGGGGGCAATTATTA 60.436 47.826 0.00 0.00 0.00 0.98
4060 4213 2.690936 GCAGAGGAAGGGGGCAATTATT 60.691 50.000 0.00 0.00 0.00 1.40
4061 4214 1.133356 GCAGAGGAAGGGGGCAATTAT 60.133 52.381 0.00 0.00 0.00 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.