Multiple sequence alignment - TraesCS2B01G306800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G306800 chr2B 100.000 5737 0 0 1 5737 439216615 439222351 0.000000e+00 10595.0
1 TraesCS2B01G306800 chr2B 100.000 1991 0 0 6021 8011 439222635 439224625 0.000000e+00 3677.0
2 TraesCS2B01G306800 chr2B 94.887 665 26 4 109 766 776690454 776689791 0.000000e+00 1033.0
3 TraesCS2B01G306800 chr2B 94.578 664 29 5 109 766 30631820 30632482 0.000000e+00 1020.0
4 TraesCS2B01G306800 chr2B 94.268 663 30 5 109 766 5263197 5263856 0.000000e+00 1007.0
5 TraesCS2B01G306800 chr2B 86.047 86 12 0 1756 1841 607109729 607109814 8.560000e-15 93.5
6 TraesCS2B01G306800 chr2A 95.721 1893 61 9 6021 7905 500529163 500531043 0.000000e+00 3029.0
7 TraesCS2B01G306800 chr2A 95.171 1346 62 2 765 2110 500524340 500525682 0.000000e+00 2122.0
8 TraesCS2B01G306800 chr2A 97.651 1107 20 3 4590 5693 500527902 500529005 0.000000e+00 1895.0
9 TraesCS2B01G306800 chr2A 95.849 1084 24 14 1655 2734 500525687 500526753 0.000000e+00 1733.0
10 TraesCS2B01G306800 chr2A 99.879 827 1 0 2735 3561 443775315 443776141 0.000000e+00 1522.0
11 TraesCS2B01G306800 chr2A 93.287 998 38 5 3622 4591 500526745 500527741 0.000000e+00 1445.0
12 TraesCS2B01G306800 chr2A 94.843 892 38 2 2734 3620 448619480 448618592 0.000000e+00 1386.0
13 TraesCS2B01G306800 chr2A 97.500 280 6 1 1888 2167 147784846 147784568 2.020000e-130 477.0
14 TraesCS2B01G306800 chr2A 97.153 281 8 0 1888 2168 692413377 692413657 7.270000e-130 475.0
15 TraesCS2B01G306800 chr2A 100.000 45 0 0 5693 5737 500529079 500529123 5.150000e-12 84.2
16 TraesCS2B01G306800 chr2D 93.237 2011 97 15 6021 8008 369478684 369480678 0.000000e+00 2924.0
17 TraesCS2B01G306800 chr2D 94.573 1253 54 6 4448 5693 369471563 369472808 0.000000e+00 1925.0
18 TraesCS2B01G306800 chr2D 93.049 892 37 5 765 1648 369466222 369467096 0.000000e+00 1280.0
19 TraesCS2B01G306800 chr2D 90.930 871 43 10 3622 4457 369469210 369470079 0.000000e+00 1138.0
20 TraesCS2B01G306800 chr2D 93.146 569 24 7 2171 2734 369468660 369469218 0.000000e+00 821.0
21 TraesCS2B01G306800 chr2D 93.130 262 13 2 1632 1888 369468399 369468660 5.870000e-101 379.0
22 TraesCS2B01G306800 chr2D 93.548 93 6 0 1876 1968 246599004 246599096 1.080000e-28 139.0
23 TraesCS2B01G306800 chr2D 97.778 45 1 0 5693 5737 369472882 369472926 2.400000e-10 78.7
24 TraesCS2B01G306800 chr5A 97.303 890 20 2 2734 3623 383048753 383049638 0.000000e+00 1507.0
25 TraesCS2B01G306800 chr5A 78.295 903 127 44 2734 3623 150395823 150394977 1.190000e-142 518.0
26 TraesCS2B01G306800 chr5A 97.810 274 6 0 1892 2165 469115704 469115977 2.620000e-129 473.0
27 TraesCS2B01G306800 chr5A 90.164 61 6 0 1776 1836 560473830 560473770 6.660000e-11 80.5
28 TraesCS2B01G306800 chr5A 92.857 42 3 0 1793 1834 640909213 640909254 2.410000e-05 62.1
29 TraesCS2B01G306800 chr5A 100.000 28 0 0 1646 1673 374620833 374620860 1.500000e-02 52.8
30 TraesCS2B01G306800 chr4B 94.570 663 31 4 109 768 666735177 666734517 0.000000e+00 1020.0
31 TraesCS2B01G306800 chr4B 94.294 666 29 6 109 768 27785141 27785803 0.000000e+00 1011.0
32 TraesCS2B01G306800 chr4B 74.006 931 170 54 2735 3624 243861221 243862120 6.040000e-81 313.0
33 TraesCS2B01G306800 chr4B 88.889 162 9 9 1 161 171518881 171518728 2.950000e-44 191.0
34 TraesCS2B01G306800 chr4B 93.701 127 7 1 1 126 250978526 250978652 1.060000e-43 189.0
35 TraesCS2B01G306800 chr4B 92.969 128 9 0 1 128 278756785 278756658 3.820000e-43 187.0
36 TraesCS2B01G306800 chr4B 77.064 218 44 5 2731 2946 513490070 513490283 3.930000e-23 121.0
37 TraesCS2B01G306800 chr4A 94.428 664 29 6 109 766 665954997 665955658 0.000000e+00 1014.0
38 TraesCS2B01G306800 chr4A 94.428 664 29 5 109 766 707938970 707938309 0.000000e+00 1014.0
39 TraesCS2B01G306800 chr4A 94.303 667 29 6 109 768 737554620 737555284 0.000000e+00 1013.0
40 TraesCS2B01G306800 chr4A 98.566 279 4 0 1887 2165 677116959 677117237 2.010000e-135 494.0
41 TraesCS2B01G306800 chr4A 83.077 195 28 4 2727 2918 179156118 179156310 1.070000e-38 172.0
42 TraesCS2B01G306800 chr6B 94.118 663 34 3 109 766 64203935 64204597 0.000000e+00 1003.0
43 TraesCS2B01G306800 chr6B 98.616 289 4 0 1879 2167 648093165 648092877 5.540000e-141 512.0
44 TraesCS2B01G306800 chr6B 82.447 188 31 2 2725 2912 187697 187882 6.430000e-36 163.0
45 TraesCS2B01G306800 chr3B 98.921 278 3 0 1888 2165 612802933 612802656 1.550000e-136 497.0
46 TraesCS2B01G306800 chr3B 95.082 122 6 0 1 122 696396821 696396700 8.200000e-45 193.0
47 TraesCS2B01G306800 chr3B 91.791 134 8 3 1 133 660502904 660502773 4.940000e-42 183.0
48 TraesCS2B01G306800 chr3B 73.881 536 101 25 3115 3622 768762850 768762326 2.300000e-40 178.0
49 TraesCS2B01G306800 chr7A 95.789 285 11 1 1883 2167 413650839 413650556 7.330000e-125 459.0
50 TraesCS2B01G306800 chr7A 93.701 127 6 2 1 127 723270446 723270570 1.060000e-43 189.0
51 TraesCS2B01G306800 chr7D 74.812 929 164 55 2735 3624 574932976 574932079 9.890000e-94 355.0
52 TraesCS2B01G306800 chr7D 71.585 820 167 50 2840 3622 257496300 257495510 6.430000e-36 163.0
53 TraesCS2B01G306800 chr7D 85.897 78 10 1 1756 1833 39518709 39518633 1.850000e-11 82.4
54 TraesCS2B01G306800 chr7D 92.683 41 3 0 1802 1842 78182498 78182458 8.680000e-05 60.2
55 TraesCS2B01G306800 chr4D 84.507 284 36 7 3342 3622 28358992 28358714 2.850000e-69 274.0
56 TraesCS2B01G306800 chr4D 98.780 82 1 0 1887 1968 380190691 380190772 6.480000e-31 147.0
57 TraesCS2B01G306800 chr4D 98.780 82 1 0 1887 1968 407569089 407569170 6.480000e-31 147.0
58 TraesCS2B01G306800 chr4D 98.780 82 1 0 1887 1968 427874891 427874972 6.480000e-31 147.0
59 TraesCS2B01G306800 chr4D 98.780 82 1 0 1887 1968 487819246 487819327 6.480000e-31 147.0
60 TraesCS2B01G306800 chr4D 91.919 99 5 3 1871 1968 50032642 50032738 1.400000e-27 135.0
61 TraesCS2B01G306800 chr4D 78.771 179 31 7 3447 3622 116162371 116162197 6.570000e-21 113.0
62 TraesCS2B01G306800 chr4D 89.091 55 6 0 3573 3627 463096372 463096318 1.440000e-07 69.4
63 TraesCS2B01G306800 chr6D 79.319 411 68 13 3216 3622 167268280 167268677 1.020000e-68 272.0
64 TraesCS2B01G306800 chr6D 76.923 546 70 34 3113 3624 276868750 276869273 7.980000e-65 259.0
65 TraesCS2B01G306800 chr6D 98.765 81 1 0 1888 1968 153360356 153360436 2.330000e-30 145.0
66 TraesCS2B01G306800 chr6D 97.561 82 2 0 1887 1968 170424802 170424721 3.010000e-29 141.0
67 TraesCS2B01G306800 chr6D 93.684 95 5 1 1875 1968 387378825 387378731 3.010000e-29 141.0
68 TraesCS2B01G306800 chr6D 97.561 82 2 0 1887 1968 422418350 422418269 3.010000e-29 141.0
69 TraesCS2B01G306800 chr6D 97.531 81 2 0 1888 1968 320895864 320895784 1.080000e-28 139.0
70 TraesCS2B01G306800 chr6D 96.341 82 3 0 1887 1968 163254837 163254918 1.400000e-27 135.0
71 TraesCS2B01G306800 chr6D 96.341 82 3 0 1887 1968 314816057 314815976 1.400000e-27 135.0
72 TraesCS2B01G306800 chr6D 96.341 82 3 0 1887 1968 359055913 359055832 1.400000e-27 135.0
73 TraesCS2B01G306800 chr6D 84.416 77 12 0 1760 1836 31826668 31826744 8.620000e-10 76.8
74 TraesCS2B01G306800 chr5B 77.724 413 76 10 3214 3622 82685498 82685098 1.040000e-58 239.0
75 TraesCS2B01G306800 chr5B 100.000 29 0 0 1805 1833 669679282 669679310 4.000000e-03 54.7
76 TraesCS2B01G306800 chr1B 96.581 117 4 0 1 117 169423636 169423520 2.280000e-45 195.0
77 TraesCS2B01G306800 chrUn 92.647 136 5 4 1 134 467414673 467414541 2.950000e-44 191.0
78 TraesCS2B01G306800 chrUn 91.912 136 6 4 1 134 314512552 314512684 1.370000e-42 185.0
79 TraesCS2B01G306800 chrUn 93.671 79 4 1 1887 1965 371199855 371199778 5.080000e-22 117.0
80 TraesCS2B01G306800 chrUn 91.525 59 5 0 1899 1957 98813191 98813133 1.850000e-11 82.4
81 TraesCS2B01G306800 chr1D 81.281 203 27 10 3423 3621 411535665 411535860 3.870000e-33 154.0
82 TraesCS2B01G306800 chr1D 98.780 82 1 0 1887 1968 39071974 39071893 6.480000e-31 147.0
83 TraesCS2B01G306800 chr1D 98.780 82 1 0 1887 1968 294774075 294773994 6.480000e-31 147.0
84 TraesCS2B01G306800 chr1D 97.561 82 2 0 1887 1968 31623611 31623692 3.010000e-29 141.0
85 TraesCS2B01G306800 chr1D 97.561 82 2 0 1887 1968 50408587 50408668 3.010000e-29 141.0
86 TraesCS2B01G306800 chr6A 81.765 170 31 0 3454 3623 129375170 129375339 8.380000e-30 143.0
87 TraesCS2B01G306800 chr6A 75.691 181 28 13 3447 3622 210837513 210837682 8.620000e-10 76.8
88 TraesCS2B01G306800 chr6A 91.667 48 4 0 1787 1834 595027915 595027868 5.190000e-07 67.6
89 TraesCS2B01G306800 chr3A 93.684 95 4 2 1872 1966 217823471 217823563 3.010000e-29 141.0
90 TraesCS2B01G306800 chr3A 83.784 148 24 0 2735 2882 645221063 645221210 3.010000e-29 141.0
91 TraesCS2B01G306800 chr3A 79.330 179 34 3 2735 2912 190119322 190119146 1.090000e-23 122.0
92 TraesCS2B01G306800 chr3D 93.684 95 3 3 1872 1966 177060058 177060149 1.080000e-28 139.0
93 TraesCS2B01G306800 chr7B 85.714 84 12 0 4685 4768 262004943 262004860 1.110000e-13 89.8
94 TraesCS2B01G306800 chr7B 93.750 48 3 0 1799 1846 192795185 192795232 1.120000e-08 73.1
95 TraesCS2B01G306800 chr5D 100.000 28 0 0 1646 1673 499238728 499238701 1.500000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G306800 chr2B 439216615 439224625 8010 False 7136.000000 10595 100.000000 1 8011 2 chr2B.!!$F4 8010
1 TraesCS2B01G306800 chr2B 776689791 776690454 663 True 1033.000000 1033 94.887000 109 766 1 chr2B.!!$R1 657
2 TraesCS2B01G306800 chr2B 30631820 30632482 662 False 1020.000000 1020 94.578000 109 766 1 chr2B.!!$F2 657
3 TraesCS2B01G306800 chr2B 5263197 5263856 659 False 1007.000000 1007 94.268000 109 766 1 chr2B.!!$F1 657
4 TraesCS2B01G306800 chr2A 500524340 500531043 6703 False 1718.033333 3029 96.279833 765 7905 6 chr2A.!!$F3 7140
5 TraesCS2B01G306800 chr2A 443775315 443776141 826 False 1522.000000 1522 99.879000 2735 3561 1 chr2A.!!$F1 826
6 TraesCS2B01G306800 chr2A 448618592 448619480 888 True 1386.000000 1386 94.843000 2734 3620 1 chr2A.!!$R2 886
7 TraesCS2B01G306800 chr2D 369478684 369480678 1994 False 2924.000000 2924 93.237000 6021 8008 1 chr2D.!!$F2 1987
8 TraesCS2B01G306800 chr2D 369466222 369472926 6704 False 936.950000 1925 93.767667 765 5737 6 chr2D.!!$F3 4972
9 TraesCS2B01G306800 chr5A 383048753 383049638 885 False 1507.000000 1507 97.303000 2734 3623 1 chr5A.!!$F2 889
10 TraesCS2B01G306800 chr5A 150394977 150395823 846 True 518.000000 518 78.295000 2734 3623 1 chr5A.!!$R1 889
11 TraesCS2B01G306800 chr4B 666734517 666735177 660 True 1020.000000 1020 94.570000 109 768 1 chr4B.!!$R3 659
12 TraesCS2B01G306800 chr4B 27785141 27785803 662 False 1011.000000 1011 94.294000 109 768 1 chr4B.!!$F1 659
13 TraesCS2B01G306800 chr4B 243861221 243862120 899 False 313.000000 313 74.006000 2735 3624 1 chr4B.!!$F2 889
14 TraesCS2B01G306800 chr4A 665954997 665955658 661 False 1014.000000 1014 94.428000 109 766 1 chr4A.!!$F2 657
15 TraesCS2B01G306800 chr4A 707938309 707938970 661 True 1014.000000 1014 94.428000 109 766 1 chr4A.!!$R1 657
16 TraesCS2B01G306800 chr4A 737554620 737555284 664 False 1013.000000 1013 94.303000 109 768 1 chr4A.!!$F4 659
17 TraesCS2B01G306800 chr6B 64203935 64204597 662 False 1003.000000 1003 94.118000 109 766 1 chr6B.!!$F2 657
18 TraesCS2B01G306800 chr7D 574932079 574932976 897 True 355.000000 355 74.812000 2735 3624 1 chr7D.!!$R4 889
19 TraesCS2B01G306800 chr6D 276868750 276869273 523 False 259.000000 259 76.923000 3113 3624 1 chr6D.!!$F5 511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
33 34 0.043940 AGATGCACTCTCCTTCCCCT 59.956 55.000 0.00 0.0 0.00 4.79 F
1160 1187 0.116541 TTTCTCTCCCCGTCTCCCTT 59.883 55.000 0.00 0.0 0.00 3.95 F
1690 3038 0.175760 GCATCGCTGGGAGACTAACA 59.824 55.000 0.00 0.0 0.00 2.41 F
3632 5571 0.254178 CCAGTCCTAGCAGCAACCAT 59.746 55.000 0.00 0.0 0.00 3.55 F
3707 5646 0.030235 CGGTGAGACGTGTGAGTCAA 59.970 55.000 0.00 0.0 43.24 3.18 F
4002 5945 0.038892 CACTGCCAAGTGCCAATCAC 60.039 55.000 0.00 0.0 46.98 3.06 F
4104 6052 0.826715 GCCTCCACTGTGCTAGATCA 59.173 55.000 1.29 0.0 0.00 2.92 F
4293 6251 0.829333 AAATGCTGCAAACACCACCA 59.171 45.000 6.36 0.0 0.00 4.17 F
4423 6407 1.261480 GAGTCTGTGGAGCCTCTTCA 58.739 55.000 0.00 0.0 0.00 3.02 F
5657 9307 4.201950 GGTGAAGCAAATACCATAGCAGTG 60.202 45.833 0.00 0.0 34.61 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1207 1234 0.319727 ACCCATTGCACGCACAATTG 60.320 50.000 3.24 3.24 38.19 2.32 R
2263 4074 0.106819 AGGCTTCAGATGGGATGTGC 60.107 55.000 0.00 0.00 0.00 4.57 R
3675 5614 0.107508 CTCACCGGAGCATGAATGGT 60.108 55.000 9.46 0.00 41.89 3.55 R
4934 8575 1.133790 CGACGTTCGGGGTTAGAGAAT 59.866 52.381 0.00 0.00 36.00 2.40 R
5657 9307 1.606606 CAAATTCTTTCGCAGCGTCC 58.393 50.000 15.93 0.00 0.00 4.79 R
5685 9335 2.625737 AGTTCAGTCATGGATCGCAAG 58.374 47.619 0.00 0.00 0.00 4.01 R
6042 9766 4.080015 TGTCAATTGTGGACTTATAGGGGG 60.080 45.833 5.13 0.00 36.26 5.40 R
6091 9815 4.124851 AGTGGTCACGGAGTAATTGATC 57.875 45.455 0.00 0.00 41.61 2.92 R
6334 10062 1.689273 AGGATAGCAAGCTCCCTAACG 59.311 52.381 12.43 0.00 30.79 3.18 R
7318 11057 0.535335 TTGCCTGAAGCCGTACTAGG 59.465 55.000 0.00 0.00 42.71 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.408182 ACAAGGGTATGTAGATGCACTC 57.592 45.455 0.00 0.00 25.83 3.51
24 25 4.033709 ACAAGGGTATGTAGATGCACTCT 58.966 43.478 0.00 0.00 38.06 3.24
25 26 4.100189 ACAAGGGTATGTAGATGCACTCTC 59.900 45.833 0.00 0.00 35.28 3.20
26 27 3.235200 AGGGTATGTAGATGCACTCTCC 58.765 50.000 0.00 0.00 35.28 3.71
27 28 3.116939 AGGGTATGTAGATGCACTCTCCT 60.117 47.826 0.00 0.00 35.28 3.69
28 29 3.643792 GGGTATGTAGATGCACTCTCCTT 59.356 47.826 0.00 0.00 35.28 3.36
29 30 4.262249 GGGTATGTAGATGCACTCTCCTTC 60.262 50.000 0.00 0.00 35.28 3.46
30 31 4.262249 GGTATGTAGATGCACTCTCCTTCC 60.262 50.000 0.00 0.00 35.28 3.46
31 32 2.111384 TGTAGATGCACTCTCCTTCCC 58.889 52.381 0.00 0.00 35.28 3.97
32 33 1.414550 GTAGATGCACTCTCCTTCCCC 59.585 57.143 0.00 0.00 35.28 4.81
33 34 0.043940 AGATGCACTCTCCTTCCCCT 59.956 55.000 0.00 0.00 0.00 4.79
34 35 0.467804 GATGCACTCTCCTTCCCCTC 59.532 60.000 0.00 0.00 0.00 4.30
35 36 1.333636 ATGCACTCTCCTTCCCCTCG 61.334 60.000 0.00 0.00 0.00 4.63
36 37 1.985116 GCACTCTCCTTCCCCTCGT 60.985 63.158 0.00 0.00 0.00 4.18
37 38 1.545706 GCACTCTCCTTCCCCTCGTT 61.546 60.000 0.00 0.00 0.00 3.85
38 39 0.247736 CACTCTCCTTCCCCTCGTTG 59.752 60.000 0.00 0.00 0.00 4.10
39 40 1.219393 CTCTCCTTCCCCTCGTTGC 59.781 63.158 0.00 0.00 0.00 4.17
40 41 1.229209 TCTCCTTCCCCTCGTTGCT 60.229 57.895 0.00 0.00 0.00 3.91
41 42 1.078848 CTCCTTCCCCTCGTTGCTG 60.079 63.158 0.00 0.00 0.00 4.41
42 43 2.045926 CCTTCCCCTCGTTGCTGG 60.046 66.667 0.00 0.00 0.00 4.85
43 44 2.750350 CTTCCCCTCGTTGCTGGT 59.250 61.111 0.00 0.00 0.00 4.00
44 45 1.073199 CTTCCCCTCGTTGCTGGTT 59.927 57.895 0.00 0.00 0.00 3.67
45 46 0.537371 CTTCCCCTCGTTGCTGGTTT 60.537 55.000 0.00 0.00 0.00 3.27
46 47 0.536460 TTCCCCTCGTTGCTGGTTTC 60.536 55.000 0.00 0.00 0.00 2.78
47 48 1.073199 CCCCTCGTTGCTGGTTTCT 59.927 57.895 0.00 0.00 0.00 2.52
48 49 0.537371 CCCCTCGTTGCTGGTTTCTT 60.537 55.000 0.00 0.00 0.00 2.52
49 50 0.875059 CCCTCGTTGCTGGTTTCTTC 59.125 55.000 0.00 0.00 0.00 2.87
50 51 1.593196 CCTCGTTGCTGGTTTCTTCA 58.407 50.000 0.00 0.00 0.00 3.02
51 52 2.154462 CCTCGTTGCTGGTTTCTTCAT 58.846 47.619 0.00 0.00 0.00 2.57
52 53 3.334691 CCTCGTTGCTGGTTTCTTCATA 58.665 45.455 0.00 0.00 0.00 2.15
53 54 3.372206 CCTCGTTGCTGGTTTCTTCATAG 59.628 47.826 0.00 0.00 0.00 2.23
54 55 4.245660 CTCGTTGCTGGTTTCTTCATAGA 58.754 43.478 0.00 0.00 0.00 1.98
55 56 4.832248 TCGTTGCTGGTTTCTTCATAGAT 58.168 39.130 0.00 0.00 0.00 1.98
56 57 5.972935 TCGTTGCTGGTTTCTTCATAGATA 58.027 37.500 0.00 0.00 0.00 1.98
57 58 6.042777 TCGTTGCTGGTTTCTTCATAGATAG 58.957 40.000 0.00 0.00 0.00 2.08
58 59 6.042777 CGTTGCTGGTTTCTTCATAGATAGA 58.957 40.000 0.00 0.00 0.00 1.98
59 60 6.703607 CGTTGCTGGTTTCTTCATAGATAGAT 59.296 38.462 0.00 0.00 0.00 1.98
60 61 7.095857 CGTTGCTGGTTTCTTCATAGATAGATC 60.096 40.741 0.00 0.00 0.00 2.75
61 62 7.609097 TGCTGGTTTCTTCATAGATAGATCT 57.391 36.000 0.00 0.00 40.86 2.75
62 63 8.027524 TGCTGGTTTCTTCATAGATAGATCTT 57.972 34.615 0.00 0.00 38.32 2.40
63 64 7.930325 TGCTGGTTTCTTCATAGATAGATCTTG 59.070 37.037 0.00 0.00 38.32 3.02
64 65 7.387397 GCTGGTTTCTTCATAGATAGATCTTGG 59.613 40.741 0.00 0.00 38.32 3.61
65 66 8.324191 TGGTTTCTTCATAGATAGATCTTGGT 57.676 34.615 0.00 0.00 38.32 3.67
66 67 8.206867 TGGTTTCTTCATAGATAGATCTTGGTG 58.793 37.037 0.00 0.00 38.32 4.17
67 68 8.424918 GGTTTCTTCATAGATAGATCTTGGTGA 58.575 37.037 0.00 0.00 38.32 4.02
68 69 9.255304 GTTTCTTCATAGATAGATCTTGGTGAC 57.745 37.037 0.00 0.00 38.32 3.67
69 70 8.539117 TTCTTCATAGATAGATCTTGGTGACA 57.461 34.615 0.00 0.00 38.32 3.58
70 71 7.946207 TCTTCATAGATAGATCTTGGTGACAC 58.054 38.462 0.00 0.00 42.67 3.67
71 72 6.319141 TCATAGATAGATCTTGGTGACACG 57.681 41.667 0.00 0.00 42.67 4.49
72 73 5.828328 TCATAGATAGATCTTGGTGACACGT 59.172 40.000 0.00 0.00 42.67 4.49
73 74 6.996282 TCATAGATAGATCTTGGTGACACGTA 59.004 38.462 0.00 0.00 42.67 3.57
74 75 5.759506 AGATAGATCTTGGTGACACGTAG 57.240 43.478 0.00 0.00 42.67 3.51
75 76 4.580995 AGATAGATCTTGGTGACACGTAGG 59.419 45.833 0.00 0.00 42.67 3.18
76 77 2.803956 AGATCTTGGTGACACGTAGGA 58.196 47.619 0.00 0.00 42.67 2.94
77 78 3.162666 AGATCTTGGTGACACGTAGGAA 58.837 45.455 0.00 0.00 42.67 3.36
78 79 3.576982 AGATCTTGGTGACACGTAGGAAA 59.423 43.478 0.00 0.00 42.67 3.13
79 80 3.823281 TCTTGGTGACACGTAGGAAAA 57.177 42.857 0.00 0.00 42.67 2.29
80 81 4.345859 TCTTGGTGACACGTAGGAAAAT 57.654 40.909 0.00 0.00 42.67 1.82
81 82 4.710324 TCTTGGTGACACGTAGGAAAATT 58.290 39.130 0.00 0.00 42.67 1.82
82 83 5.127491 TCTTGGTGACACGTAGGAAAATTT 58.873 37.500 0.00 0.00 42.67 1.82
83 84 5.591067 TCTTGGTGACACGTAGGAAAATTTT 59.409 36.000 2.28 2.28 42.67 1.82
84 85 5.176407 TGGTGACACGTAGGAAAATTTTG 57.824 39.130 8.47 0.00 33.40 2.44
85 86 4.882427 TGGTGACACGTAGGAAAATTTTGA 59.118 37.500 8.47 0.00 33.40 2.69
86 87 5.357314 TGGTGACACGTAGGAAAATTTTGAA 59.643 36.000 8.47 0.00 33.40 2.69
87 88 6.039941 TGGTGACACGTAGGAAAATTTTGAAT 59.960 34.615 8.47 0.00 33.40 2.57
88 89 6.921307 GGTGACACGTAGGAAAATTTTGAATT 59.079 34.615 8.47 0.00 0.00 2.17
89 90 7.436970 GGTGACACGTAGGAAAATTTTGAATTT 59.563 33.333 8.47 0.00 0.00 1.82
90 91 8.476925 GTGACACGTAGGAAAATTTTGAATTTC 58.523 33.333 8.47 0.00 35.33 2.17
91 92 8.410141 TGACACGTAGGAAAATTTTGAATTTCT 58.590 29.630 8.47 0.00 36.15 2.52
92 93 8.574196 ACACGTAGGAAAATTTTGAATTTCTG 57.426 30.769 8.47 0.00 36.15 3.02
93 94 7.169140 ACACGTAGGAAAATTTTGAATTTCTGC 59.831 33.333 8.47 0.00 36.15 4.26
94 95 7.382218 CACGTAGGAAAATTTTGAATTTCTGCT 59.618 33.333 8.47 0.00 36.15 4.24
95 96 8.573035 ACGTAGGAAAATTTTGAATTTCTGCTA 58.427 29.630 8.47 0.00 36.15 3.49
96 97 9.573133 CGTAGGAAAATTTTGAATTTCTGCTAT 57.427 29.630 8.47 0.00 36.15 2.97
99 100 9.783081 AGGAAAATTTTGAATTTCTGCTATGTT 57.217 25.926 8.47 0.00 36.15 2.71
102 103 8.552083 AAATTTTGAATTTCTGCTATGTTCCC 57.448 30.769 0.00 0.00 0.00 3.97
103 104 5.659440 TTTGAATTTCTGCTATGTTCCCC 57.341 39.130 0.00 0.00 0.00 4.81
104 105 4.591321 TGAATTTCTGCTATGTTCCCCT 57.409 40.909 0.00 0.00 0.00 4.79
105 106 5.708736 TGAATTTCTGCTATGTTCCCCTA 57.291 39.130 0.00 0.00 0.00 3.53
106 107 5.437060 TGAATTTCTGCTATGTTCCCCTAC 58.563 41.667 0.00 0.00 0.00 3.18
107 108 5.045213 TGAATTTCTGCTATGTTCCCCTACA 60.045 40.000 0.00 0.00 0.00 2.74
460 470 1.229209 TCAAGGAGGAGAAGGCCGT 60.229 57.895 0.00 0.00 0.00 5.68
467 477 2.772691 GGAGAAGGCCGTCGACGAT 61.773 63.158 37.65 20.54 43.02 3.73
595 605 4.800784 TGTTTGGCCGAAATTTAACTAGC 58.199 39.130 7.10 0.00 0.00 3.42
602 612 7.832769 TGGCCGAAATTTAACTAGCTTTTATT 58.167 30.769 0.00 0.00 0.00 1.40
654 669 4.802051 TACGCGCCTAGGGACGGT 62.802 66.667 11.72 9.06 36.53 4.83
768 789 4.887615 GGCTGGAGATGCCCTTAC 57.112 61.111 0.00 0.00 44.32 2.34
769 790 1.227674 GGCTGGAGATGCCCTTACG 60.228 63.158 0.00 0.00 44.32 3.18
770 791 1.889573 GCTGGAGATGCCCTTACGC 60.890 63.158 0.00 0.00 34.97 4.42
771 792 1.227674 CTGGAGATGCCCTTACGCC 60.228 63.158 0.00 0.00 34.97 5.68
772 793 1.971505 CTGGAGATGCCCTTACGCCA 61.972 60.000 0.00 0.00 34.97 5.69
773 794 1.523938 GGAGATGCCCTTACGCCAC 60.524 63.158 0.00 0.00 0.00 5.01
774 795 1.883084 GAGATGCCCTTACGCCACG 60.883 63.158 0.00 0.00 0.00 4.94
775 796 3.573491 GATGCCCTTACGCCACGC 61.573 66.667 0.00 0.00 0.00 5.34
843 870 2.034687 CTCCAACCCCACAGCCAG 59.965 66.667 0.00 0.00 0.00 4.85
867 894 3.097728 CGAAACGAGACGCACGCT 61.098 61.111 0.00 0.00 0.00 5.07
899 926 3.382832 CCGTTCGCTCACTCCCCT 61.383 66.667 0.00 0.00 0.00 4.79
903 930 3.239627 TTCGCTCACTCCCCTCCCT 62.240 63.158 0.00 0.00 0.00 4.20
907 934 3.615811 TCACTCCCCTCCCTGCCT 61.616 66.667 0.00 0.00 0.00 4.75
1160 1187 0.116541 TTTCTCTCCCCGTCTCCCTT 59.883 55.000 0.00 0.00 0.00 3.95
1161 1188 0.614979 TTCTCTCCCCGTCTCCCTTG 60.615 60.000 0.00 0.00 0.00 3.61
1171 1198 0.687354 GTCTCCCTTGCCTTCTCACA 59.313 55.000 0.00 0.00 0.00 3.58
1207 1234 1.729838 GACCGAGTGACGACTGCAC 60.730 63.158 0.00 0.00 45.77 4.57
1225 1252 0.319727 ACAATTGTGCGTGCAATGGG 60.320 50.000 11.07 8.13 38.87 4.00
1255 1282 2.734606 TCCGTCTTAGTTTGCATTGACG 59.265 45.455 0.00 0.00 44.32 4.35
1262 1289 0.775861 GTTTGCATTGACGCGGTTTC 59.224 50.000 12.47 0.00 33.35 2.78
1314 1341 4.531426 TTTGCTGCCCCCGGTGTT 62.531 61.111 0.00 0.00 0.00 3.32
1347 1374 3.119101 ACTCTTCTACGCCAATCGATGTT 60.119 43.478 0.00 0.00 41.67 2.71
1419 1446 3.869272 CATTCGGCAGCGCTGTCC 61.869 66.667 34.36 31.61 36.18 4.02
1420 1447 4.393155 ATTCGGCAGCGCTGTCCA 62.393 61.111 34.33 24.76 36.18 4.02
1496 1525 2.290323 GCAGATTGTAGTGTTGGGAGGT 60.290 50.000 0.00 0.00 0.00 3.85
1573 1602 0.390472 GTGAGCCTCAGCAGGTACAC 60.390 60.000 0.00 6.22 42.74 2.90
1676 3024 1.902508 ACCCTACCCATATGAGCATCG 59.097 52.381 3.65 0.00 38.61 3.84
1690 3038 0.175760 GCATCGCTGGGAGACTAACA 59.824 55.000 0.00 0.00 0.00 2.41
1797 3602 1.221021 CTAGGACTTGAACCCGGGC 59.779 63.158 24.08 5.60 0.00 6.13
1836 3646 4.686191 AGGAATCTAACCATCTGAGCTG 57.314 45.455 0.00 0.00 0.00 4.24
2068 3879 2.288458 CCTTGTTGCAAAAATGCCACAG 59.712 45.455 1.65 3.75 40.66 3.66
2083 3894 2.875672 GCCACAGCTTACCTCACAATCA 60.876 50.000 0.00 0.00 35.50 2.57
2141 3952 2.485426 CAGACACACCATCATCACCAAC 59.515 50.000 0.00 0.00 0.00 3.77
2155 3966 8.824781 CATCATCACCAACTGAGTCTTTTATAG 58.175 37.037 0.00 0.00 30.20 1.31
2163 3974 8.410141 CCAACTGAGTCTTTTATAGGAGTAGAG 58.590 40.741 0.00 0.00 0.00 2.43
2164 3975 9.179909 CAACTGAGTCTTTTATAGGAGTAGAGA 57.820 37.037 0.00 0.00 0.00 3.10
2165 3976 9.930158 AACTGAGTCTTTTATAGGAGTAGAGAT 57.070 33.333 0.00 0.00 0.00 2.75
2209 4020 2.711009 TCCCTTGAGTGAGTTGTCCATT 59.289 45.455 0.00 0.00 0.00 3.16
2262 4073 7.006509 TCTTTTCCAGAGACCAAATTCAAGAT 58.993 34.615 0.00 0.00 0.00 2.40
2263 4074 6.579666 TTTCCAGAGACCAAATTCAAGATG 57.420 37.500 0.00 0.00 0.00 2.90
2424 4236 0.464373 CAGTCCAAGCACACACACCT 60.464 55.000 0.00 0.00 0.00 4.00
2585 4401 3.379650 CGGATGTCGTTGGCCTTAT 57.620 52.632 3.32 0.00 0.00 1.73
2603 4419 2.754946 ATCGCACTAAAAGGAACCGA 57.245 45.000 0.00 0.00 0.00 4.69
2612 4428 5.987347 CACTAAAAGGAACCGACACTAAAGA 59.013 40.000 0.00 0.00 0.00 2.52
3624 5563 1.522092 CGAATGCCCAGTCCTAGCA 59.478 57.895 0.00 0.00 41.50 3.49
3625 5564 0.531532 CGAATGCCCAGTCCTAGCAG 60.532 60.000 0.00 0.00 40.40 4.24
3626 5565 0.817229 GAATGCCCAGTCCTAGCAGC 60.817 60.000 0.00 0.00 40.40 5.25
3627 5566 1.565390 AATGCCCAGTCCTAGCAGCA 61.565 55.000 0.00 0.00 40.40 4.41
3628 5567 1.565390 ATGCCCAGTCCTAGCAGCAA 61.565 55.000 0.00 0.00 40.40 3.91
3629 5568 1.746991 GCCCAGTCCTAGCAGCAAC 60.747 63.158 0.00 0.00 0.00 4.17
3632 5571 0.254178 CCAGTCCTAGCAGCAACCAT 59.746 55.000 0.00 0.00 0.00 3.55
3645 5584 0.682209 CAACCATCTCCCCTTGCCAG 60.682 60.000 0.00 0.00 0.00 4.85
3707 5646 0.030235 CGGTGAGACGTGTGAGTCAA 59.970 55.000 0.00 0.00 43.24 3.18
3806 5749 2.535012 GATCCAGAGAAACCGGATCC 57.465 55.000 9.46 0.00 46.40 3.36
3874 5817 0.179100 CACGATGACGCCTCCAAGAT 60.179 55.000 0.00 0.00 43.96 2.40
3882 5825 3.055458 TGACGCCTCCAAGATAAATGACA 60.055 43.478 0.00 0.00 0.00 3.58
3920 5863 2.159184 TCATTTGTGCGAACAAAAGCCA 60.159 40.909 25.00 2.65 42.04 4.75
4002 5945 0.038892 CACTGCCAAGTGCCAATCAC 60.039 55.000 0.00 0.00 46.98 3.06
4067 6015 4.073200 GCATGCACACCAAGCCCC 62.073 66.667 14.21 0.00 32.20 5.80
4104 6052 0.826715 GCCTCCACTGTGCTAGATCA 59.173 55.000 1.29 0.00 0.00 2.92
4111 6059 2.954989 CACTGTGCTAGATCAGGAGCTA 59.045 50.000 15.52 0.00 39.54 3.32
4129 6087 2.289002 GCTACCTTTCAGATCCATTGCG 59.711 50.000 0.00 0.00 0.00 4.85
4256 6214 2.035237 TTTGAGGACCGAACACCGCT 62.035 55.000 0.00 0.00 36.84 5.52
4293 6251 0.829333 AAATGCTGCAAACACCACCA 59.171 45.000 6.36 0.00 0.00 4.17
4423 6407 1.261480 GAGTCTGTGGAGCCTCTTCA 58.739 55.000 0.00 0.00 0.00 3.02
4934 8575 7.343574 TGTGAACTGCTCCCTATATTAGTTACA 59.656 37.037 0.00 0.00 0.00 2.41
5103 8749 7.177184 TGTTCTGGACTAATAGTGGTACAGTA 58.823 38.462 17.16 6.47 45.29 2.74
5227 8876 6.850752 TGGATCCTTTGAAACTAATTTCCC 57.149 37.500 14.23 0.00 43.18 3.97
5365 9014 5.164061 GCTAATTGCGAATGTGTTTTCTTGG 60.164 40.000 0.00 0.00 0.00 3.61
5371 9020 4.290155 CGAATGTGTTTTCTTGGGAAGTG 58.710 43.478 0.00 0.00 32.61 3.16
5392 9041 7.447374 AGTGCTGTATTGCTTTAACATTACA 57.553 32.000 0.00 0.00 35.92 2.41
5515 9165 6.876257 GGCCCTCTCATATTCAGTTAAGTATG 59.124 42.308 0.00 0.00 0.00 2.39
5657 9307 4.201950 GGTGAAGCAAATACCATAGCAGTG 60.202 45.833 0.00 0.00 34.61 3.66
6091 9815 7.275920 ACTCTATGGAATAGTTTAGTTGCAGG 58.724 38.462 0.00 0.00 46.98 4.85
6103 9827 6.599638 AGTTTAGTTGCAGGATCAATTACTCC 59.400 38.462 0.00 0.00 0.00 3.85
6300 10027 9.996554 AAAAGAAAACTTTATCATTAAGGGTGG 57.003 29.630 0.00 0.00 0.00 4.61
6457 10194 4.881850 AGTTATATTGTGTTGCCTAGCACC 59.118 41.667 0.00 0.00 38.71 5.01
6459 10196 1.538047 ATTGTGTTGCCTAGCACCTG 58.462 50.000 0.00 0.00 38.71 4.00
6675 10414 5.009610 CCTCAGGTTAGATCTCTGCTACTTC 59.990 48.000 0.00 0.00 0.00 3.01
6714 10453 9.987272 TGTGTTTATGAGAGTATATCCAATCTG 57.013 33.333 0.00 0.00 0.00 2.90
6717 10456 9.347934 GTTTATGAGAGTATATCCAATCTGACG 57.652 37.037 0.00 0.00 0.00 4.35
6920 10659 1.359117 CGTGGACGATGTCGCCTAT 59.641 57.895 13.93 0.00 44.43 2.57
6944 10683 2.743938 GTGATCAACGCCGTCATAGAT 58.256 47.619 0.00 0.00 0.00 1.98
6965 10704 2.158957 TGACAGCTTCTTCGGAGTGTTT 60.159 45.455 0.00 0.00 0.00 2.83
6989 10728 2.479566 TCGAGCAAATCAAGGAAGCT 57.520 45.000 0.00 0.00 38.43 3.74
7109 10848 2.554032 GCCAAACTCAGTACTGCAATGT 59.446 45.455 18.45 10.71 0.00 2.71
7133 10872 6.486253 TGTGCTTAGAGAGTTTAAATGCAG 57.514 37.500 0.00 0.00 0.00 4.41
7256 10995 3.119708 GCACAAAAATGGGTTGCAACAAA 60.120 39.130 29.55 17.72 0.00 2.83
7309 11048 6.681729 TCTTTAACCTCACACATAACCTCT 57.318 37.500 0.00 0.00 0.00 3.69
7317 11056 2.485426 CACACATAACCTCTGTTGCCTG 59.515 50.000 0.00 0.00 35.87 4.85
7318 11057 1.470098 CACATAACCTCTGTTGCCTGC 59.530 52.381 0.00 0.00 35.87 4.85
7319 11058 1.098050 CATAACCTCTGTTGCCTGCC 58.902 55.000 0.00 0.00 35.87 4.85
7320 11059 0.995024 ATAACCTCTGTTGCCTGCCT 59.005 50.000 0.00 0.00 35.87 4.75
7391 11130 3.827898 CCCTCCGACGAGCCTGAC 61.828 72.222 0.00 0.00 34.49 3.51
7477 11216 3.615811 TCCCAGGCTGTCCTCCCT 61.616 66.667 14.43 0.00 41.93 4.20
7557 11296 1.360852 TCTTCTTCCTCTGCTCCCTCT 59.639 52.381 0.00 0.00 0.00 3.69
7631 11371 2.930040 CGCTCTCTATCTCTCTCCGATC 59.070 54.545 0.00 0.00 0.00 3.69
7683 11423 0.605319 GGCTGGATCACCAACACGAA 60.605 55.000 0.00 0.00 46.32 3.85
7710 11450 0.258774 GCAGAGGAAGGGGGCAATTA 59.741 55.000 0.00 0.00 0.00 1.40
7711 11451 1.133356 GCAGAGGAAGGGGGCAATTAT 60.133 52.381 0.00 0.00 0.00 1.28
7712 11452 2.690936 GCAGAGGAAGGGGGCAATTATT 60.691 50.000 0.00 0.00 0.00 1.40
7852 11597 1.982073 GCTTGCCGAAAGACGATGGG 61.982 60.000 0.00 0.00 45.77 4.00
7942 11687 5.472137 GCTTACGGGGAAAGCAATAATCATA 59.528 40.000 3.07 0.00 46.85 2.15
7966 11714 3.650461 AGGGCTTTCTCTCTTTCACTCTT 59.350 43.478 0.00 0.00 0.00 2.85
7978 11726 6.701841 TCTCTTTCACTCTTGTGTATTGTGAC 59.298 38.462 0.00 0.00 44.14 3.67
8008 11756 6.293845 CCCATTCTTGTCTCTTCTTGTGAAAG 60.294 42.308 0.00 0.00 0.00 2.62
8009 11757 6.293845 CCATTCTTGTCTCTTCTTGTGAAAGG 60.294 42.308 0.00 0.00 0.00 3.11
8010 11758 4.708177 TCTTGTCTCTTCTTGTGAAAGGG 58.292 43.478 0.00 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.033709 AGAGTGCATCTACATACCCTTGT 58.966 43.478 0.00 0.00 36.10 3.16
3 4 4.502259 GGAGAGTGCATCTACATACCCTTG 60.502 50.000 0.00 0.00 38.94 3.61
4 5 3.643792 GGAGAGTGCATCTACATACCCTT 59.356 47.826 0.00 0.00 38.94 3.95
5 6 3.116939 AGGAGAGTGCATCTACATACCCT 60.117 47.826 9.98 4.47 42.01 4.34
6 7 3.235200 AGGAGAGTGCATCTACATACCC 58.765 50.000 9.98 2.71 42.01 3.69
7 8 4.262249 GGAAGGAGAGTGCATCTACATACC 60.262 50.000 9.98 6.83 42.01 2.73
8 9 4.262249 GGGAAGGAGAGTGCATCTACATAC 60.262 50.000 9.98 0.82 42.01 2.39
9 10 3.898123 GGGAAGGAGAGTGCATCTACATA 59.102 47.826 9.98 0.00 42.01 2.29
10 11 2.703007 GGGAAGGAGAGTGCATCTACAT 59.297 50.000 9.98 0.00 42.01 2.29
11 12 2.111384 GGGAAGGAGAGTGCATCTACA 58.889 52.381 9.98 0.00 42.01 2.74
12 13 1.414550 GGGGAAGGAGAGTGCATCTAC 59.585 57.143 0.00 0.00 38.84 2.59
13 14 1.292242 AGGGGAAGGAGAGTGCATCTA 59.708 52.381 0.00 0.00 38.84 1.98
14 15 0.043940 AGGGGAAGGAGAGTGCATCT 59.956 55.000 0.00 0.00 42.61 2.90
15 16 0.467804 GAGGGGAAGGAGAGTGCATC 59.532 60.000 0.00 0.00 0.00 3.91
16 17 1.333636 CGAGGGGAAGGAGAGTGCAT 61.334 60.000 0.00 0.00 0.00 3.96
17 18 1.984570 CGAGGGGAAGGAGAGTGCA 60.985 63.158 0.00 0.00 0.00 4.57
18 19 1.545706 AACGAGGGGAAGGAGAGTGC 61.546 60.000 0.00 0.00 0.00 4.40
19 20 0.247736 CAACGAGGGGAAGGAGAGTG 59.752 60.000 0.00 0.00 0.00 3.51
20 21 1.545706 GCAACGAGGGGAAGGAGAGT 61.546 60.000 0.00 0.00 0.00 3.24
21 22 1.219393 GCAACGAGGGGAAGGAGAG 59.781 63.158 0.00 0.00 0.00 3.20
22 23 1.229209 AGCAACGAGGGGAAGGAGA 60.229 57.895 0.00 0.00 0.00 3.71
23 24 1.078848 CAGCAACGAGGGGAAGGAG 60.079 63.158 0.00 0.00 0.00 3.69
24 25 2.592993 CCAGCAACGAGGGGAAGGA 61.593 63.158 0.00 0.00 0.00 3.36
25 26 2.045926 CCAGCAACGAGGGGAAGG 60.046 66.667 0.00 0.00 0.00 3.46
26 27 0.537371 AAACCAGCAACGAGGGGAAG 60.537 55.000 0.00 0.00 0.00 3.46
27 28 0.536460 GAAACCAGCAACGAGGGGAA 60.536 55.000 0.00 0.00 0.00 3.97
28 29 1.072505 GAAACCAGCAACGAGGGGA 59.927 57.895 0.00 0.00 0.00 4.81
29 30 0.537371 AAGAAACCAGCAACGAGGGG 60.537 55.000 0.00 0.00 0.00 4.79
30 31 0.875059 GAAGAAACCAGCAACGAGGG 59.125 55.000 0.00 0.00 0.00 4.30
31 32 1.593196 TGAAGAAACCAGCAACGAGG 58.407 50.000 0.00 0.00 0.00 4.63
32 33 4.245660 TCTATGAAGAAACCAGCAACGAG 58.754 43.478 0.00 0.00 0.00 4.18
33 34 4.265904 TCTATGAAGAAACCAGCAACGA 57.734 40.909 0.00 0.00 0.00 3.85
34 35 6.042777 TCTATCTATGAAGAAACCAGCAACG 58.957 40.000 0.00 0.00 34.73 4.10
35 36 7.930865 AGATCTATCTATGAAGAAACCAGCAAC 59.069 37.037 0.00 0.00 34.85 4.17
36 37 8.027524 AGATCTATCTATGAAGAAACCAGCAA 57.972 34.615 0.00 0.00 34.85 3.91
37 38 7.609097 AGATCTATCTATGAAGAAACCAGCA 57.391 36.000 0.00 0.00 34.85 4.41
38 39 7.387397 CCAAGATCTATCTATGAAGAAACCAGC 59.613 40.741 0.00 0.00 35.76 4.85
39 40 8.428063 ACCAAGATCTATCTATGAAGAAACCAG 58.572 37.037 0.00 0.00 35.76 4.00
40 41 8.206867 CACCAAGATCTATCTATGAAGAAACCA 58.793 37.037 0.00 0.00 35.76 3.67
41 42 8.424918 TCACCAAGATCTATCTATGAAGAAACC 58.575 37.037 0.00 0.00 35.76 3.27
42 43 9.255304 GTCACCAAGATCTATCTATGAAGAAAC 57.745 37.037 0.00 0.00 35.76 2.78
43 44 8.981659 TGTCACCAAGATCTATCTATGAAGAAA 58.018 33.333 0.00 0.00 35.76 2.52
44 45 8.417106 GTGTCACCAAGATCTATCTATGAAGAA 58.583 37.037 0.00 0.00 35.76 2.52
45 46 7.255277 CGTGTCACCAAGATCTATCTATGAAGA 60.255 40.741 0.00 0.00 35.76 2.87
46 47 6.860539 CGTGTCACCAAGATCTATCTATGAAG 59.139 42.308 0.00 0.00 35.76 3.02
47 48 6.321435 ACGTGTCACCAAGATCTATCTATGAA 59.679 38.462 0.00 0.00 35.76 2.57
48 49 5.828328 ACGTGTCACCAAGATCTATCTATGA 59.172 40.000 0.00 0.00 35.76 2.15
49 50 6.078202 ACGTGTCACCAAGATCTATCTATG 57.922 41.667 0.00 0.00 35.76 2.23
50 51 6.431543 CCTACGTGTCACCAAGATCTATCTAT 59.568 42.308 0.00 0.00 35.76 1.98
51 52 5.763698 CCTACGTGTCACCAAGATCTATCTA 59.236 44.000 0.00 0.00 35.76 1.98
52 53 4.580995 CCTACGTGTCACCAAGATCTATCT 59.419 45.833 0.00 0.00 39.22 1.98
53 54 4.579340 TCCTACGTGTCACCAAGATCTATC 59.421 45.833 0.00 0.00 0.00 2.08
54 55 4.533815 TCCTACGTGTCACCAAGATCTAT 58.466 43.478 0.00 0.00 0.00 1.98
55 56 3.959293 TCCTACGTGTCACCAAGATCTA 58.041 45.455 0.00 0.00 0.00 1.98
56 57 2.803956 TCCTACGTGTCACCAAGATCT 58.196 47.619 0.00 0.00 0.00 2.75
57 58 3.587797 TTCCTACGTGTCACCAAGATC 57.412 47.619 0.00 0.00 0.00 2.75
58 59 4.345859 TTTTCCTACGTGTCACCAAGAT 57.654 40.909 0.00 0.00 0.00 2.40
59 60 3.823281 TTTTCCTACGTGTCACCAAGA 57.177 42.857 0.00 0.00 0.00 3.02
60 61 5.432885 AAATTTTCCTACGTGTCACCAAG 57.567 39.130 0.00 0.00 0.00 3.61
61 62 5.357314 TCAAAATTTTCCTACGTGTCACCAA 59.643 36.000 0.00 0.00 0.00 3.67
62 63 4.882427 TCAAAATTTTCCTACGTGTCACCA 59.118 37.500 0.00 0.00 0.00 4.17
63 64 5.427036 TCAAAATTTTCCTACGTGTCACC 57.573 39.130 0.00 0.00 0.00 4.02
64 65 7.924103 AATTCAAAATTTTCCTACGTGTCAC 57.076 32.000 0.00 0.00 0.00 3.67
65 66 8.410141 AGAAATTCAAAATTTTCCTACGTGTCA 58.590 29.630 0.00 0.00 33.30 3.58
66 67 8.690840 CAGAAATTCAAAATTTTCCTACGTGTC 58.309 33.333 0.00 0.00 33.30 3.67
67 68 7.169140 GCAGAAATTCAAAATTTTCCTACGTGT 59.831 33.333 0.00 0.00 33.30 4.49
68 69 7.382218 AGCAGAAATTCAAAATTTTCCTACGTG 59.618 33.333 0.00 0.00 33.30 4.49
69 70 7.433680 AGCAGAAATTCAAAATTTTCCTACGT 58.566 30.769 0.00 0.00 33.30 3.57
70 71 7.873739 AGCAGAAATTCAAAATTTTCCTACG 57.126 32.000 0.00 0.00 33.30 3.51
73 74 9.783081 AACATAGCAGAAATTCAAAATTTTCCT 57.217 25.926 0.00 0.86 33.30 3.36
76 77 9.002600 GGGAACATAGCAGAAATTCAAAATTTT 57.997 29.630 0.00 0.00 0.00 1.82
77 78 7.607607 GGGGAACATAGCAGAAATTCAAAATTT 59.392 33.333 0.00 0.00 0.00 1.82
78 79 7.038088 AGGGGAACATAGCAGAAATTCAAAATT 60.038 33.333 0.00 0.00 0.00 1.82
79 80 6.441604 AGGGGAACATAGCAGAAATTCAAAAT 59.558 34.615 0.00 0.00 0.00 1.82
80 81 5.779771 AGGGGAACATAGCAGAAATTCAAAA 59.220 36.000 0.00 0.00 0.00 2.44
81 82 5.332743 AGGGGAACATAGCAGAAATTCAAA 58.667 37.500 0.00 0.00 0.00 2.69
82 83 4.934356 AGGGGAACATAGCAGAAATTCAA 58.066 39.130 0.00 0.00 0.00 2.69
83 84 4.591321 AGGGGAACATAGCAGAAATTCA 57.409 40.909 0.00 0.00 0.00 2.57
84 85 5.437060 TGTAGGGGAACATAGCAGAAATTC 58.563 41.667 0.00 0.00 0.00 2.17
85 86 5.440610 CTGTAGGGGAACATAGCAGAAATT 58.559 41.667 0.00 0.00 31.75 1.82
86 87 4.687219 GCTGTAGGGGAACATAGCAGAAAT 60.687 45.833 0.00 0.00 31.75 2.17
87 88 3.370527 GCTGTAGGGGAACATAGCAGAAA 60.371 47.826 0.00 0.00 31.75 2.52
88 89 2.170607 GCTGTAGGGGAACATAGCAGAA 59.829 50.000 0.00 0.00 31.75 3.02
89 90 1.762957 GCTGTAGGGGAACATAGCAGA 59.237 52.381 0.00 0.00 31.75 4.26
90 91 1.202698 GGCTGTAGGGGAACATAGCAG 60.203 57.143 0.00 0.00 32.61 4.24
91 92 0.837272 GGCTGTAGGGGAACATAGCA 59.163 55.000 0.00 0.00 0.00 3.49
92 93 1.070914 GAGGCTGTAGGGGAACATAGC 59.929 57.143 0.00 0.00 0.00 2.97
93 94 1.341531 CGAGGCTGTAGGGGAACATAG 59.658 57.143 0.00 0.00 0.00 2.23
94 95 1.342674 ACGAGGCTGTAGGGGAACATA 60.343 52.381 0.00 0.00 0.00 2.29
95 96 0.617820 ACGAGGCTGTAGGGGAACAT 60.618 55.000 0.00 0.00 0.00 2.71
96 97 1.229082 ACGAGGCTGTAGGGGAACA 60.229 57.895 0.00 0.00 0.00 3.18
97 98 1.516423 GACGAGGCTGTAGGGGAAC 59.484 63.158 0.00 0.00 0.00 3.62
98 99 1.684734 GGACGAGGCTGTAGGGGAA 60.685 63.158 0.00 0.00 0.00 3.97
99 100 2.043248 GGACGAGGCTGTAGGGGA 60.043 66.667 0.00 0.00 0.00 4.81
100 101 2.042843 AGGACGAGGCTGTAGGGG 60.043 66.667 0.00 0.00 0.00 4.79
101 102 2.482333 CGAGGACGAGGCTGTAGGG 61.482 68.421 0.00 0.00 42.66 3.53
102 103 1.716826 GACGAGGACGAGGCTGTAGG 61.717 65.000 0.00 0.00 42.66 3.18
103 104 1.722677 GACGAGGACGAGGCTGTAG 59.277 63.158 0.00 0.00 42.66 2.74
104 105 2.104859 CGACGAGGACGAGGCTGTA 61.105 63.158 0.00 0.00 42.66 2.74
105 106 3.432588 CGACGAGGACGAGGCTGT 61.433 66.667 0.00 0.00 42.66 4.40
106 107 4.180946 CCGACGAGGACGAGGCTG 62.181 72.222 0.00 0.00 45.00 4.85
229 230 4.547367 GGCGCGCCCATTCTAGGT 62.547 66.667 39.89 0.00 0.00 3.08
460 470 2.024163 CGCCATCGTCATCGTCGA 59.976 61.111 0.00 0.00 41.45 4.20
595 605 6.699063 ACGTTCGGCGAAGTTATAATAAAAG 58.301 36.000 24.41 1.72 44.77 2.27
602 612 2.419673 TGAGACGTTCGGCGAAGTTATA 59.580 45.455 24.41 5.47 44.77 0.98
775 796 4.729918 GCTCTGGCCTGGTGTGGG 62.730 72.222 10.07 0.00 0.00 4.61
843 870 2.713894 CGTCTCGTTTCGGTTCCGC 61.714 63.158 6.35 0.00 0.00 5.54
899 926 3.702048 CGACGGGAAAGGCAGGGA 61.702 66.667 0.00 0.00 0.00 4.20
907 934 3.540367 GAAGGGTGGCGACGGGAAA 62.540 63.158 0.00 0.00 0.00 3.13
1007 1034 1.797933 CGGACGAGCAGTGTCGAAG 60.798 63.158 17.92 7.85 42.85 3.79
1008 1035 2.254350 CGGACGAGCAGTGTCGAA 59.746 61.111 17.92 0.00 42.85 3.71
1119 1146 2.028130 CTAGAGAACTGAGCCACGGAT 58.972 52.381 0.00 0.00 0.00 4.18
1160 1187 2.224018 GCAAAAACCATGTGAGAAGGCA 60.224 45.455 0.00 0.00 0.00 4.75
1161 1188 2.036346 AGCAAAAACCATGTGAGAAGGC 59.964 45.455 0.00 0.00 0.00 4.35
1171 1198 1.798813 GTCGACGAGAGCAAAAACCAT 59.201 47.619 0.00 0.00 0.00 3.55
1207 1234 0.319727 ACCCATTGCACGCACAATTG 60.320 50.000 3.24 3.24 38.19 2.32
1219 1246 1.063469 GACGGAAATACGCACCCATTG 59.937 52.381 0.00 0.00 37.37 2.82
1225 1252 4.634991 CAAACTAAGACGGAAATACGCAC 58.365 43.478 0.00 0.00 37.37 5.34
1262 1289 1.097547 CAGCCTGCGTAATCAAGGGG 61.098 60.000 0.00 0.00 0.00 4.79
1347 1374 3.446310 TCTGTTTTCACGTCTGCTACA 57.554 42.857 0.00 0.00 0.00 2.74
1419 1446 1.269778 TGGAGAAACAGAGTCGTGCTG 60.270 52.381 0.00 0.00 39.26 4.41
1420 1447 1.000283 CTGGAGAAACAGAGTCGTGCT 60.000 52.381 0.00 0.00 40.97 4.40
1496 1525 4.098914 AGCAGAACCAACAAATCCACTA 57.901 40.909 0.00 0.00 0.00 2.74
1611 1640 6.147656 TGTTTGTGAACTGTCTGCATATGTAG 59.852 38.462 14.12 14.12 36.70 2.74
1729 3534 9.189156 TCCTGAATTTATTTATTCCAGTCCTTG 57.811 33.333 0.00 0.00 34.34 3.61
1836 3646 6.740411 AGAGAAAAGATGAGAATTGAGCAC 57.260 37.500 0.00 0.00 0.00 4.40
2068 3879 5.528690 TGCATCTAATGATTGTGAGGTAAGC 59.471 40.000 0.00 0.00 0.00 3.09
2083 3894 7.550597 TCTAACCATCAGATCTGCATCTAAT 57.449 36.000 18.36 2.09 37.25 1.73
2155 3966 6.882678 GGAAGTGGTATCTCTATCTCTACTCC 59.117 46.154 0.00 0.00 0.00 3.85
2163 3974 5.537300 TTGCAGGAAGTGGTATCTCTATC 57.463 43.478 0.00 0.00 0.00 2.08
2164 3975 5.957771 TTTGCAGGAAGTGGTATCTCTAT 57.042 39.130 0.00 0.00 0.00 1.98
2165 3976 5.755409 TTTTGCAGGAAGTGGTATCTCTA 57.245 39.130 0.00 0.00 0.00 2.43
2166 3977 4.640771 TTTTGCAGGAAGTGGTATCTCT 57.359 40.909 0.00 0.00 0.00 3.10
2167 3978 4.336713 GGATTTTGCAGGAAGTGGTATCTC 59.663 45.833 0.00 0.00 0.00 2.75
2168 3979 4.273318 GGATTTTGCAGGAAGTGGTATCT 58.727 43.478 0.00 0.00 0.00 1.98
2209 4020 3.621268 GCTGGATTGATAACGTGCACTAA 59.379 43.478 16.19 0.00 0.00 2.24
2262 4073 0.394762 GGCTTCAGATGGGATGTGCA 60.395 55.000 0.00 0.00 0.00 4.57
2263 4074 0.106819 AGGCTTCAGATGGGATGTGC 60.107 55.000 0.00 0.00 0.00 4.57
2376 4188 4.202151 GCACCCCATTGTATCCTGAATTTC 60.202 45.833 0.00 0.00 0.00 2.17
2377 4189 3.706086 GCACCCCATTGTATCCTGAATTT 59.294 43.478 0.00 0.00 0.00 1.82
2378 4190 3.299503 GCACCCCATTGTATCCTGAATT 58.700 45.455 0.00 0.00 0.00 2.17
2379 4191 2.244510 TGCACCCCATTGTATCCTGAAT 59.755 45.455 0.00 0.00 0.00 2.57
2380 4192 1.638070 TGCACCCCATTGTATCCTGAA 59.362 47.619 0.00 0.00 0.00 3.02
2381 4193 1.294041 TGCACCCCATTGTATCCTGA 58.706 50.000 0.00 0.00 0.00 3.86
2382 4194 2.142356 TTGCACCCCATTGTATCCTG 57.858 50.000 0.00 0.00 0.00 3.86
2383 4195 2.669781 CATTGCACCCCATTGTATCCT 58.330 47.619 0.00 0.00 0.00 3.24
2392 4204 2.283101 GACTGCCATTGCACCCCA 60.283 61.111 0.00 0.00 44.23 4.96
2424 4236 6.272792 TCTTTTGTTACCCCTATTGTAGTGGA 59.727 38.462 0.00 0.00 0.00 4.02
2555 4371 0.736325 GACATCCGTGTGTTCTCGGG 60.736 60.000 8.45 0.00 46.55 5.14
2571 4387 1.017177 GTGCGATAAGGCCAACGACA 61.017 55.000 5.01 4.93 0.00 4.35
2585 4401 1.068895 TGTCGGTTCCTTTTAGTGCGA 59.931 47.619 0.00 0.00 0.00 5.10
2603 4419 4.809426 CACGTTCTTCCAGTTCTTTAGTGT 59.191 41.667 0.00 0.00 0.00 3.55
2644 4460 2.296831 TTGTTGACGTCTTTCGACCA 57.703 45.000 17.92 0.14 42.86 4.02
3624 5563 1.000396 GCAAGGGGAGATGGTTGCT 60.000 57.895 0.00 0.00 41.69 3.91
3625 5564 2.054453 GGCAAGGGGAGATGGTTGC 61.054 63.158 0.00 0.00 43.73 4.17
3626 5565 0.682209 CTGGCAAGGGGAGATGGTTG 60.682 60.000 0.00 0.00 0.00 3.77
3627 5566 1.693640 CTGGCAAGGGGAGATGGTT 59.306 57.895 0.00 0.00 0.00 3.67
3628 5567 2.988839 GCTGGCAAGGGGAGATGGT 61.989 63.158 0.00 0.00 0.00 3.55
3629 5568 2.123982 GCTGGCAAGGGGAGATGG 60.124 66.667 0.00 0.00 0.00 3.51
3632 5571 2.005606 TTTGTGCTGGCAAGGGGAGA 62.006 55.000 0.00 0.00 0.00 3.71
3675 5614 0.107508 CTCACCGGAGCATGAATGGT 60.108 55.000 9.46 0.00 41.89 3.55
3707 5646 1.003233 GATCCCTCGTTGGTTGGTTCT 59.997 52.381 0.00 0.00 0.00 3.01
3806 5749 3.252974 ACTGTCAGGATAAAAGCCTCG 57.747 47.619 4.53 0.00 32.12 4.63
3882 5825 2.674380 ACGTCGACGCCTTAGGGT 60.674 61.111 35.92 12.80 44.43 4.34
4002 5945 2.551459 CAAGTTCAAGAGCTTCCAGTGG 59.449 50.000 1.40 1.40 29.11 4.00
4067 6015 0.747283 GCATCTGGTGGCCTTGAGAG 60.747 60.000 3.32 0.00 0.00 3.20
4111 6059 1.004745 ACCGCAATGGATCTGAAAGGT 59.995 47.619 0.00 0.00 42.00 3.50
4125 6083 2.159338 GGTCGTCATAGTCTAACCGCAA 60.159 50.000 0.00 0.00 0.00 4.85
4129 6087 2.223433 CGGTGGTCGTCATAGTCTAACC 60.223 54.545 0.00 0.00 0.00 2.85
4256 6214 3.985019 TTTTCGGATGGCTAGTTGGTA 57.015 42.857 0.00 0.00 0.00 3.25
4293 6251 2.110188 TGGGAGTTCTCTCTAGTGGTGT 59.890 50.000 1.33 0.00 40.29 4.16
4339 6297 2.202987 CTGCCCCTCATCGTCAGC 60.203 66.667 0.00 0.00 0.00 4.26
4341 6299 2.284625 ACCTGCCCCTCATCGTCA 60.285 61.111 0.00 0.00 0.00 4.35
4343 6301 3.402681 CCACCTGCCCCTCATCGT 61.403 66.667 0.00 0.00 0.00 3.73
4396 6380 1.763968 CTCCACAGACTCCCGTATCA 58.236 55.000 0.00 0.00 0.00 2.15
4409 6393 1.277273 CTGACATGAAGAGGCTCCACA 59.723 52.381 11.71 12.07 0.00 4.17
4423 6407 7.639062 ATTCCCTTGATTATCTACCTGACAT 57.361 36.000 0.00 0.00 0.00 3.06
4499 7976 6.116126 ACTTCCTTAATTATCTGCCTGACAC 58.884 40.000 0.00 0.00 0.00 3.67
4934 8575 1.133790 CGACGTTCGGGGTTAGAGAAT 59.866 52.381 0.00 0.00 36.00 2.40
5214 8863 7.940178 AACAAAATGACGGGAAATTAGTTTC 57.060 32.000 2.22 2.22 42.39 2.78
5365 9014 5.371115 TGTTAAAGCAATACAGCACTTCC 57.629 39.130 0.00 0.00 36.85 3.46
5371 9020 6.852664 AGGTGTAATGTTAAAGCAATACAGC 58.147 36.000 13.20 13.20 45.79 4.40
5392 9041 5.949952 GGAAATACCAAGGTTCATACAAGGT 59.050 40.000 0.00 0.00 38.79 3.50
5515 9165 6.743575 AAACATCTCCTGCATAACAGTAAC 57.256 37.500 0.00 0.00 45.68 2.50
5657 9307 1.606606 CAAATTCTTTCGCAGCGTCC 58.393 50.000 15.93 0.00 0.00 4.79
5685 9335 2.625737 AGTTCAGTCATGGATCGCAAG 58.374 47.619 0.00 0.00 0.00 4.01
6042 9766 4.080015 TGTCAATTGTGGACTTATAGGGGG 60.080 45.833 5.13 0.00 36.26 5.40
6046 9770 9.823647 ATAGAGTTGTCAATTGTGGACTTATAG 57.176 33.333 5.13 0.00 36.26 1.31
6091 9815 4.124851 AGTGGTCACGGAGTAATTGATC 57.875 45.455 0.00 0.00 41.61 2.92
6103 9827 8.833231 ATATTCCTATAATTCAAGTGGTCACG 57.167 34.615 0.00 0.00 36.20 4.35
6334 10062 1.689273 AGGATAGCAAGCTCCCTAACG 59.311 52.381 12.43 0.00 30.79 3.18
6457 10194 6.881602 AGACAATAAAAGGAAGAGTAAGCCAG 59.118 38.462 0.00 0.00 0.00 4.85
6459 10196 6.879458 TCAGACAATAAAAGGAAGAGTAAGCC 59.121 38.462 0.00 0.00 0.00 4.35
6515 10254 3.117888 GGGATCCCTGCAGAAGAACATAA 60.118 47.826 24.69 0.00 0.00 1.90
6697 10436 9.562583 GATAAACGTCAGATTGGATATACTCTC 57.437 37.037 0.00 0.00 0.00 3.20
6714 10453 5.668558 ACAACACCTGAAAGATAAACGTC 57.331 39.130 0.00 0.00 34.07 4.34
6717 10456 8.237267 CCTCAATACAACACCTGAAAGATAAAC 58.763 37.037 0.00 0.00 34.07 2.01
6944 10683 1.040646 ACACTCCGAAGAAGCTGTCA 58.959 50.000 0.00 0.00 0.00 3.58
6965 10704 4.094887 GCTTCCTTGATTTGCTCGATTGTA 59.905 41.667 0.00 0.00 0.00 2.41
7037 10776 1.747355 CAACAACATGAGCATCCCTCC 59.253 52.381 0.00 0.00 39.98 4.30
7109 10848 6.486657 ACTGCATTTAAACTCTCTAAGCACAA 59.513 34.615 0.00 0.00 0.00 3.33
7133 10872 5.634859 CAGCTTTTGGAATGGATTGTGTTAC 59.365 40.000 0.00 0.00 0.00 2.50
7256 10995 2.040412 GGGGTTCTTCTGATGGTGAAGT 59.960 50.000 0.00 0.00 41.04 3.01
7309 11048 1.594833 CCGTACTAGGCAGGCAACA 59.405 57.895 0.00 0.00 41.41 3.33
7318 11057 0.535335 TTGCCTGAAGCCGTACTAGG 59.465 55.000 0.00 0.00 42.71 3.02
7319 11058 2.474816 GATTGCCTGAAGCCGTACTAG 58.525 52.381 0.00 0.00 42.71 2.57
7320 11059 1.202371 CGATTGCCTGAAGCCGTACTA 60.202 52.381 0.00 0.00 42.71 1.82
7408 11147 1.515736 GGCGTCTTACCTTCGTCCG 60.516 63.158 0.00 0.00 0.00 4.79
7415 11154 2.660802 CCAACCGGCGTCTTACCT 59.339 61.111 6.01 0.00 0.00 3.08
7557 11296 0.743688 AACAAGCGCAACATGGTGAA 59.256 45.000 16.85 0.00 0.00 3.18
7631 11371 1.569548 TGGAGGTAGGAGTAGTCCAGG 59.430 57.143 19.00 0.00 46.80 4.45
7683 11423 0.535102 CCCTTCCTCTGCGTTTGTGT 60.535 55.000 0.00 0.00 0.00 3.72
7710 11450 5.009811 GGCTTGAGACCAGTCGTAGTATAAT 59.990 44.000 0.00 0.00 34.09 1.28
7711 11451 4.337555 GGCTTGAGACCAGTCGTAGTATAA 59.662 45.833 0.00 0.00 34.09 0.98
7712 11452 3.881688 GGCTTGAGACCAGTCGTAGTATA 59.118 47.826 0.00 0.00 34.09 1.47
7765 11510 3.049674 GCTTGCGTGCTGTGCCTA 61.050 61.111 0.00 0.00 0.00 3.93
7821 11566 2.134346 TCGGCAAGCATTTCTTTTTGC 58.866 42.857 0.00 0.00 43.81 3.68
7862 11607 5.626116 CGGAGTGTAGTTACTAGGGCATTTT 60.626 44.000 0.00 0.00 0.00 1.82
7863 11608 4.142004 CGGAGTGTAGTTACTAGGGCATTT 60.142 45.833 0.00 0.00 0.00 2.32
7913 11658 0.249398 GCTTTCCCCGTAAGCAGAGA 59.751 55.000 0.00 0.00 45.64 3.10
7942 11687 2.708325 AGTGAAAGAGAGAAAGCCCTGT 59.292 45.455 0.00 0.00 0.00 4.00
7966 11714 4.746535 ATGGGTATCGTCACAATACACA 57.253 40.909 0.00 0.00 44.69 3.72
7978 11726 5.269505 AGAAGAGACAAGAATGGGTATCG 57.730 43.478 0.00 0.00 30.90 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.