Multiple sequence alignment - TraesCS2B01G305400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G305400 chr2B 100.000 3937 0 0 1 3937 435478140 435482076 0.000000e+00 7271
1 TraesCS2B01G305400 chr2A 93.876 2988 118 33 481 3422 496385334 496388302 0.000000e+00 4444
2 TraesCS2B01G305400 chr2A 87.633 469 44 9 1 458 118438657 118438192 2.080000e-147 532
3 TraesCS2B01G305400 chr2A 80.080 502 65 20 3455 3937 496390175 496390660 1.350000e-89 340
4 TraesCS2B01G305400 chr2D 96.962 1679 37 8 1792 3457 366924775 366926452 0.000000e+00 2806
5 TraesCS2B01G305400 chr2D 94.934 1204 31 15 609 1794 366923423 366924614 0.000000e+00 1858
6 TraesCS2B01G305400 chr2D 86.316 475 47 14 1 461 378278527 378278057 5.870000e-138 501
7 TraesCS2B01G305400 chr2D 91.373 255 14 4 3683 3937 366926649 366926895 3.770000e-90 342
8 TraesCS2B01G305400 chr2D 84.783 276 39 2 3149 3422 601423987 601423713 1.390000e-69 274
9 TraesCS2B01G305400 chr2D 92.143 140 11 0 3455 3594 366926495 366926634 8.630000e-47 198
10 TraesCS2B01G305400 chr6D 88.445 476 40 9 1 465 141140978 141140507 9.550000e-156 560
11 TraesCS2B01G305400 chr4B 88.462 468 40 8 3 461 3640813 3640351 1.600000e-153 553
12 TraesCS2B01G305400 chr4B 77.811 338 51 18 3489 3808 25353350 25353019 1.870000e-43 187
13 TraesCS2B01G305400 chr3D 87.746 457 44 6 1 446 15024890 15024435 1.250000e-144 523
14 TraesCS2B01G305400 chr7A 86.809 470 47 10 1 458 518573141 518573607 9.760000e-141 510
15 TraesCS2B01G305400 chr7A 86.596 470 49 9 1 458 69551988 69551521 1.260000e-139 507
16 TraesCS2B01G305400 chr5A 86.128 483 52 12 1 470 534454232 534454712 1.260000e-139 507
17 TraesCS2B01G305400 chr4A 86.134 476 48 12 1 462 563085649 563086120 7.600000e-137 497
18 TraesCS2B01G305400 chr4A 79.753 405 41 25 3486 3872 465279298 465278917 5.050000e-64 255
19 TraesCS2B01G305400 chr3A 81.454 399 42 21 3486 3867 36665651 36665268 8.270000e-77 298
20 TraesCS2B01G305400 chr3A 79.455 404 50 22 3486 3872 730597647 730598034 5.050000e-64 255
21 TraesCS2B01G305400 chr5D 82.164 342 39 18 3486 3809 547999089 547998752 1.390000e-69 274
22 TraesCS2B01G305400 chr5B 80.247 405 43 24 3486 3872 505364892 505364507 1.800000e-68 270
23 TraesCS2B01G305400 chr7D 79.803 406 52 23 3458 3848 621732503 621732113 6.480000e-68 268
24 TraesCS2B01G305400 chr3B 81.197 351 39 22 3531 3872 170828271 170827939 1.400000e-64 257
25 TraesCS2B01G305400 chr3B 76.246 341 54 19 3496 3815 131568371 131568037 5.270000e-34 156
26 TraesCS2B01G305400 chr1A 82.274 299 34 12 3486 3770 345187495 345187788 1.410000e-59 241
27 TraesCS2B01G305400 chr1A 86.429 140 12 4 3684 3822 546905323 546905190 3.170000e-31 147
28 TraesCS2B01G305400 chr4D 78.304 401 56 18 3486 3872 51294037 51294420 3.060000e-56 230
29 TraesCS2B01G305400 chr7B 76.991 339 56 15 3486 3808 718148944 718148612 1.450000e-39 174


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G305400 chr2B 435478140 435482076 3936 False 7271 7271 100.000 1 3937 1 chr2B.!!$F1 3936
1 TraesCS2B01G305400 chr2A 496385334 496390660 5326 False 2392 4444 86.978 481 3937 2 chr2A.!!$F1 3456
2 TraesCS2B01G305400 chr2D 366923423 366926895 3472 False 1301 2806 93.853 609 3937 4 chr2D.!!$F1 3328

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
232 233 0.034089 GAAATGTGGAGAGGGGGTGG 60.034 60.0 0.00 0.00 0.00 4.61 F
361 362 0.037046 ATTTTACGGGCCGAACGAGT 60.037 50.0 35.78 11.90 34.93 4.18 F
364 365 0.101040 TTACGGGCCGAACGAGTATG 59.899 55.0 35.78 0.00 34.93 2.39 F
382 383 0.108138 TGTTTTGGTTTGTTGGCCGG 60.108 50.0 0.00 0.00 0.00 6.13 F
383 384 0.175989 GTTTTGGTTTGTTGGCCGGA 59.824 50.0 5.05 0.00 0.00 5.14 F
415 416 0.249489 GCCCGCATACTCGTCAGAAT 60.249 55.0 0.00 0.00 0.00 2.40 F
1640 1682 0.534427 GGCGGGTGAGGTAATTAGCC 60.534 60.0 10.99 1.94 36.32 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1040 1057 0.391793 GCGTCAGGGAAGAAGAAGGG 60.392 60.000 0.00 0.0 0.00 3.95 R
1800 2005 0.687354 TCCTTGTCTTGTCTCCTGGC 59.313 55.000 0.00 0.0 0.00 4.85 R
2104 2309 2.939103 AGCTGATTGTTTAGATCGGTGC 59.061 45.455 0.00 0.0 33.39 5.01 R
2379 2584 4.804420 TCCGCTGGGGAGAGCCAT 62.804 66.667 9.69 0.0 40.94 4.40 R
2536 2741 3.573626 TGCTTATGCACATGCCAGA 57.426 47.368 0.00 0.0 45.31 3.86 R
2656 2861 9.656040 ATCAGATGATATTTCTGTCTGCTTATC 57.344 33.333 13.36 0.0 41.13 1.75 R
3221 3437 0.107456 CCCTGATGCGCCTCTACAAT 59.893 55.000 13.93 0.0 0.00 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.882025 GGTCGTACTCGTCCGTCT 58.118 61.111 0.00 0.00 35.87 4.18
20 21 1.712663 GGTCGTACTCGTCCGTCTC 59.287 63.158 0.00 0.00 35.87 3.36
21 22 1.343147 GTCGTACTCGTCCGTCTCG 59.657 63.158 0.00 0.00 38.33 4.04
22 23 2.021106 CGTACTCGTCCGTCTCGC 59.979 66.667 0.00 0.00 0.00 5.03
23 24 2.021106 GTACTCGTCCGTCTCGCG 59.979 66.667 0.00 0.00 40.95 5.87
64 65 3.047877 CCGCGGTTGGTCCACTTC 61.048 66.667 19.50 0.00 35.57 3.01
65 66 3.047877 CGCGGTTGGTCCACTTCC 61.048 66.667 0.00 0.00 35.57 3.46
66 67 2.430367 GCGGTTGGTCCACTTCCT 59.570 61.111 0.00 0.00 35.57 3.36
67 68 1.671379 GCGGTTGGTCCACTTCCTC 60.671 63.158 0.00 0.00 35.57 3.71
68 69 1.374252 CGGTTGGTCCACTTCCTCG 60.374 63.158 0.00 0.00 35.57 4.63
69 70 1.671379 GGTTGGTCCACTTCCTCGC 60.671 63.158 0.00 0.00 35.97 5.03
70 71 1.671379 GTTGGTCCACTTCCTCGCC 60.671 63.158 0.00 0.00 0.00 5.54
71 72 2.890766 TTGGTCCACTTCCTCGCCC 61.891 63.158 0.00 0.00 0.00 6.13
72 73 4.097361 GGTCCACTTCCTCGCCCC 62.097 72.222 0.00 0.00 0.00 5.80
73 74 3.319198 GTCCACTTCCTCGCCCCA 61.319 66.667 0.00 0.00 0.00 4.96
74 75 3.319198 TCCACTTCCTCGCCCCAC 61.319 66.667 0.00 0.00 0.00 4.61
75 76 4.760047 CCACTTCCTCGCCCCACG 62.760 72.222 0.00 0.00 45.62 4.94
78 79 4.394712 CTTCCTCGCCCCACGCTT 62.395 66.667 0.00 0.00 43.23 4.68
79 80 4.388499 TTCCTCGCCCCACGCTTC 62.388 66.667 0.00 0.00 43.23 3.86
82 83 4.821589 CTCGCCCCACGCTTCCTC 62.822 72.222 0.00 0.00 43.23 3.71
159 160 4.443266 GAAGCCGCGTCCAGAGCT 62.443 66.667 4.92 1.66 37.10 4.09
160 161 4.443266 AAGCCGCGTCCAGAGCTC 62.443 66.667 5.27 5.27 33.56 4.09
163 164 4.803426 CCGCGTCCAGAGCTCCAC 62.803 72.222 10.93 3.98 0.00 4.02
164 165 4.056125 CGCGTCCAGAGCTCCACA 62.056 66.667 10.93 0.00 0.00 4.17
165 166 2.581354 GCGTCCAGAGCTCCACAT 59.419 61.111 10.93 0.00 0.00 3.21
166 167 1.816537 GCGTCCAGAGCTCCACATA 59.183 57.895 10.93 0.00 0.00 2.29
167 168 0.528684 GCGTCCAGAGCTCCACATAC 60.529 60.000 10.93 1.22 0.00 2.39
168 169 0.248661 CGTCCAGAGCTCCACATACG 60.249 60.000 10.93 9.94 0.00 3.06
169 170 1.103803 GTCCAGAGCTCCACATACGA 58.896 55.000 10.93 0.00 0.00 3.43
170 171 1.103803 TCCAGAGCTCCACATACGAC 58.896 55.000 10.93 0.00 0.00 4.34
171 172 0.103208 CCAGAGCTCCACATACGACC 59.897 60.000 10.93 0.00 0.00 4.79
172 173 0.103208 CAGAGCTCCACATACGACCC 59.897 60.000 10.93 0.00 0.00 4.46
173 174 1.043673 AGAGCTCCACATACGACCCC 61.044 60.000 10.93 0.00 0.00 4.95
174 175 1.305802 AGCTCCACATACGACCCCA 60.306 57.895 0.00 0.00 0.00 4.96
175 176 1.153429 GCTCCACATACGACCCCAC 60.153 63.158 0.00 0.00 0.00 4.61
176 177 1.895020 GCTCCACATACGACCCCACA 61.895 60.000 0.00 0.00 0.00 4.17
177 178 0.830648 CTCCACATACGACCCCACAT 59.169 55.000 0.00 0.00 0.00 3.21
178 179 0.539518 TCCACATACGACCCCACATG 59.460 55.000 0.00 0.00 0.00 3.21
179 180 0.463654 CCACATACGACCCCACATGG 60.464 60.000 0.00 0.00 0.00 3.66
180 181 1.095228 CACATACGACCCCACATGGC 61.095 60.000 0.00 0.00 0.00 4.40
181 182 1.223211 CATACGACCCCACATGGCA 59.777 57.895 0.00 0.00 0.00 4.92
182 183 0.815213 CATACGACCCCACATGGCAG 60.815 60.000 0.00 0.00 0.00 4.85
183 184 2.608970 ATACGACCCCACATGGCAGC 62.609 60.000 0.00 0.00 0.00 5.25
184 185 4.415150 CGACCCCACATGGCAGCT 62.415 66.667 0.00 0.00 0.00 4.24
185 186 2.753043 GACCCCACATGGCAGCTG 60.753 66.667 10.11 10.11 0.00 4.24
186 187 4.371417 ACCCCACATGGCAGCTGG 62.371 66.667 17.12 6.29 0.00 4.85
187 188 4.051167 CCCCACATGGCAGCTGGA 62.051 66.667 17.12 0.00 0.00 3.86
188 189 2.439701 CCCACATGGCAGCTGGAG 60.440 66.667 17.12 0.00 0.00 3.86
189 190 2.439701 CCACATGGCAGCTGGAGG 60.440 66.667 17.12 2.69 0.00 4.30
190 191 3.138798 CACATGGCAGCTGGAGGC 61.139 66.667 17.12 1.96 42.19 4.70
219 220 3.263941 GCCAACGGCGAGAAATGT 58.736 55.556 16.62 0.00 39.62 2.71
220 221 1.154225 GCCAACGGCGAGAAATGTG 60.154 57.895 16.62 0.00 39.62 3.21
221 222 1.501741 CCAACGGCGAGAAATGTGG 59.498 57.895 16.62 5.14 0.00 4.17
222 223 0.953471 CCAACGGCGAGAAATGTGGA 60.953 55.000 16.62 0.00 0.00 4.02
223 224 0.443869 CAACGGCGAGAAATGTGGAG 59.556 55.000 16.62 0.00 0.00 3.86
224 225 0.320374 AACGGCGAGAAATGTGGAGA 59.680 50.000 16.62 0.00 0.00 3.71
225 226 0.108615 ACGGCGAGAAATGTGGAGAG 60.109 55.000 16.62 0.00 0.00 3.20
226 227 0.807667 CGGCGAGAAATGTGGAGAGG 60.808 60.000 0.00 0.00 0.00 3.69
227 228 0.462759 GGCGAGAAATGTGGAGAGGG 60.463 60.000 0.00 0.00 0.00 4.30
228 229 0.462759 GCGAGAAATGTGGAGAGGGG 60.463 60.000 0.00 0.00 0.00 4.79
229 230 0.179000 CGAGAAATGTGGAGAGGGGG 59.821 60.000 0.00 0.00 0.00 5.40
230 231 1.290134 GAGAAATGTGGAGAGGGGGT 58.710 55.000 0.00 0.00 0.00 4.95
231 232 0.995024 AGAAATGTGGAGAGGGGGTG 59.005 55.000 0.00 0.00 0.00 4.61
232 233 0.034089 GAAATGTGGAGAGGGGGTGG 60.034 60.000 0.00 0.00 0.00 4.61
233 234 1.509548 AAATGTGGAGAGGGGGTGGG 61.510 60.000 0.00 0.00 0.00 4.61
234 235 3.970363 ATGTGGAGAGGGGGTGGGG 62.970 68.421 0.00 0.00 0.00 4.96
235 236 4.348495 GTGGAGAGGGGGTGGGGA 62.348 72.222 0.00 0.00 0.00 4.81
236 237 3.547737 TGGAGAGGGGGTGGGGAA 61.548 66.667 0.00 0.00 0.00 3.97
237 238 2.044620 GGAGAGGGGGTGGGGAAT 59.955 66.667 0.00 0.00 0.00 3.01
238 239 1.622752 GGAGAGGGGGTGGGGAATT 60.623 63.158 0.00 0.00 0.00 2.17
239 240 1.615262 GAGAGGGGGTGGGGAATTG 59.385 63.158 0.00 0.00 0.00 2.32
240 241 2.042944 GAGGGGGTGGGGAATTGC 60.043 66.667 0.00 0.00 0.00 3.56
241 242 4.060667 AGGGGGTGGGGAATTGCG 62.061 66.667 0.00 0.00 0.00 4.85
242 243 4.376170 GGGGGTGGGGAATTGCGT 62.376 66.667 0.00 0.00 0.00 5.24
243 244 2.678470 GGGGTGGGGAATTGCGTA 59.322 61.111 0.00 0.00 0.00 4.42
244 245 1.453197 GGGGTGGGGAATTGCGTAG 60.453 63.158 0.00 0.00 0.00 3.51
269 270 3.547513 GCGGCGGAGGGATAGGTT 61.548 66.667 9.78 0.00 0.00 3.50
270 271 3.103091 GCGGCGGAGGGATAGGTTT 62.103 63.158 9.78 0.00 0.00 3.27
271 272 1.069258 CGGCGGAGGGATAGGTTTC 59.931 63.158 0.00 0.00 0.00 2.78
272 273 1.682451 CGGCGGAGGGATAGGTTTCA 61.682 60.000 0.00 0.00 0.00 2.69
273 274 0.544697 GGCGGAGGGATAGGTTTCAA 59.455 55.000 0.00 0.00 0.00 2.69
274 275 1.664873 GCGGAGGGATAGGTTTCAAC 58.335 55.000 0.00 0.00 0.00 3.18
284 285 2.527671 GGTTTCAACCCGCAAATGC 58.472 52.632 0.00 0.00 43.43 3.56
301 302 4.564116 CGCCGCGAACCCGTAGAT 62.564 66.667 8.23 0.00 38.24 1.98
302 303 2.723746 GCCGCGAACCCGTAGATA 59.276 61.111 8.23 0.00 38.24 1.98
303 304 1.288127 GCCGCGAACCCGTAGATAT 59.712 57.895 8.23 0.00 38.24 1.63
304 305 0.523072 GCCGCGAACCCGTAGATATA 59.477 55.000 8.23 0.00 38.24 0.86
305 306 1.730446 GCCGCGAACCCGTAGATATAC 60.730 57.143 8.23 0.00 38.24 1.47
306 307 1.808945 CCGCGAACCCGTAGATATACT 59.191 52.381 8.23 0.00 38.24 2.12
307 308 2.413765 CCGCGAACCCGTAGATATACTG 60.414 54.545 8.23 0.00 38.24 2.74
308 309 2.413765 CGCGAACCCGTAGATATACTGG 60.414 54.545 0.00 6.43 38.24 4.00
309 310 2.555757 GCGAACCCGTAGATATACTGGT 59.444 50.000 7.70 7.70 38.87 4.00
310 311 3.365767 GCGAACCCGTAGATATACTGGTC 60.366 52.174 13.19 7.10 36.70 4.02
311 312 3.120408 CGAACCCGTAGATATACTGGTCG 60.120 52.174 13.19 13.52 36.70 4.79
312 313 2.787994 ACCCGTAGATATACTGGTCGG 58.212 52.381 7.70 0.00 33.15 4.79
313 314 2.089980 CCCGTAGATATACTGGTCGGG 58.910 57.143 5.38 5.38 44.53 5.14
314 315 2.089980 CCGTAGATATACTGGTCGGGG 58.910 57.143 0.00 0.00 36.20 5.73
315 316 1.471684 CGTAGATATACTGGTCGGGGC 59.528 57.143 0.00 0.00 0.00 5.80
316 317 1.471684 GTAGATATACTGGTCGGGGCG 59.528 57.143 0.00 0.00 0.00 6.13
317 318 0.178970 AGATATACTGGTCGGGGCGT 60.179 55.000 0.00 0.00 0.00 5.68
318 319 0.038526 GATATACTGGTCGGGGCGTG 60.039 60.000 0.00 0.00 0.00 5.34
319 320 2.095978 ATATACTGGTCGGGGCGTGC 62.096 60.000 0.00 0.00 0.00 5.34
342 343 3.501548 GCGGGCCGCGACAAATTA 61.502 61.111 37.09 0.00 44.55 1.40
343 344 2.830285 GCGGGCCGCGACAAATTAT 61.830 57.895 37.09 0.00 44.55 1.28
344 345 1.725066 CGGGCCGCGACAAATTATT 59.275 52.632 15.42 0.00 0.00 1.40
345 346 0.099791 CGGGCCGCGACAAATTATTT 59.900 50.000 15.42 0.00 0.00 1.40
346 347 1.468395 CGGGCCGCGACAAATTATTTT 60.468 47.619 15.42 0.00 0.00 1.82
347 348 2.223294 CGGGCCGCGACAAATTATTTTA 60.223 45.455 15.42 0.00 0.00 1.52
348 349 3.110358 GGGCCGCGACAAATTATTTTAC 58.890 45.455 8.23 0.00 0.00 2.01
349 350 2.779471 GGCCGCGACAAATTATTTTACG 59.221 45.455 8.23 8.23 0.00 3.18
350 351 2.779471 GCCGCGACAAATTATTTTACGG 59.221 45.455 8.23 11.67 40.97 4.02
351 352 3.356145 CCGCGACAAATTATTTTACGGG 58.644 45.455 8.23 16.60 36.96 5.28
352 353 2.779471 CGCGACAAATTATTTTACGGGC 59.221 45.455 0.00 3.16 33.72 6.13
353 354 3.110358 GCGACAAATTATTTTACGGGCC 58.890 45.455 0.00 0.00 0.00 5.80
354 355 3.356145 CGACAAATTATTTTACGGGCCG 58.644 45.455 27.06 27.06 0.00 6.13
355 356 3.063725 CGACAAATTATTTTACGGGCCGA 59.936 43.478 35.78 13.93 0.00 5.54
356 357 4.437121 CGACAAATTATTTTACGGGCCGAA 60.437 41.667 35.78 17.76 0.00 4.30
357 358 4.735985 ACAAATTATTTTACGGGCCGAAC 58.264 39.130 35.78 0.00 0.00 3.95
358 359 3.678915 AATTATTTTACGGGCCGAACG 57.321 42.857 35.78 6.05 37.36 3.95
359 360 2.376808 TTATTTTACGGGCCGAACGA 57.623 45.000 35.78 15.91 34.93 3.85
360 361 1.925229 TATTTTACGGGCCGAACGAG 58.075 50.000 35.78 1.74 34.93 4.18
361 362 0.037046 ATTTTACGGGCCGAACGAGT 60.037 50.000 35.78 11.90 34.93 4.18
362 363 0.600557 TTTTACGGGCCGAACGAGTA 59.399 50.000 35.78 10.68 34.93 2.59
363 364 0.817013 TTTACGGGCCGAACGAGTAT 59.183 50.000 35.78 10.16 34.93 2.12
364 365 0.101040 TTACGGGCCGAACGAGTATG 59.899 55.000 35.78 0.00 34.93 2.39
365 366 1.031571 TACGGGCCGAACGAGTATGT 61.032 55.000 35.78 8.45 34.93 2.29
366 367 1.153706 CGGGCCGAACGAGTATGTT 60.154 57.895 24.41 0.00 34.02 2.71
367 368 0.738412 CGGGCCGAACGAGTATGTTT 60.738 55.000 24.41 0.00 30.75 2.83
368 369 1.445871 GGGCCGAACGAGTATGTTTT 58.554 50.000 0.00 0.00 30.75 2.43
369 370 1.129811 GGGCCGAACGAGTATGTTTTG 59.870 52.381 0.00 0.00 30.75 2.44
370 371 1.129811 GGCCGAACGAGTATGTTTTGG 59.870 52.381 0.00 0.00 33.35 3.28
371 372 1.802365 GCCGAACGAGTATGTTTTGGT 59.198 47.619 0.00 0.00 33.00 3.67
372 373 2.224784 GCCGAACGAGTATGTTTTGGTT 59.775 45.455 0.00 0.00 33.00 3.67
373 374 3.304190 GCCGAACGAGTATGTTTTGGTTT 60.304 43.478 0.00 0.00 33.00 3.27
374 375 4.215965 CCGAACGAGTATGTTTTGGTTTG 58.784 43.478 0.00 0.00 30.75 2.93
375 376 4.260866 CCGAACGAGTATGTTTTGGTTTGT 60.261 41.667 0.00 0.00 30.75 2.83
376 377 5.267776 CGAACGAGTATGTTTTGGTTTGTT 58.732 37.500 0.00 0.00 30.75 2.83
377 378 5.170625 CGAACGAGTATGTTTTGGTTTGTTG 59.829 40.000 0.00 0.00 30.75 3.33
378 379 4.927422 ACGAGTATGTTTTGGTTTGTTGG 58.073 39.130 0.00 0.00 0.00 3.77
379 380 3.733727 CGAGTATGTTTTGGTTTGTTGGC 59.266 43.478 0.00 0.00 0.00 4.52
380 381 4.055360 GAGTATGTTTTGGTTTGTTGGCC 58.945 43.478 0.00 0.00 0.00 5.36
381 382 1.946745 ATGTTTTGGTTTGTTGGCCG 58.053 45.000 0.00 0.00 0.00 6.13
382 383 0.108138 TGTTTTGGTTTGTTGGCCGG 60.108 50.000 0.00 0.00 0.00 6.13
383 384 0.175989 GTTTTGGTTTGTTGGCCGGA 59.824 50.000 5.05 0.00 0.00 5.14
384 385 0.902531 TTTTGGTTTGTTGGCCGGAA 59.097 45.000 5.05 0.00 0.00 4.30
385 386 0.902531 TTTGGTTTGTTGGCCGGAAA 59.097 45.000 5.05 0.00 0.00 3.13
386 387 0.902531 TTGGTTTGTTGGCCGGAAAA 59.097 45.000 5.05 0.00 0.00 2.29
387 388 1.123928 TGGTTTGTTGGCCGGAAAAT 58.876 45.000 5.05 0.00 0.00 1.82
388 389 1.486726 TGGTTTGTTGGCCGGAAAATT 59.513 42.857 5.05 0.00 0.00 1.82
389 390 1.870402 GGTTTGTTGGCCGGAAAATTG 59.130 47.619 5.05 0.00 0.00 2.32
390 391 1.870402 GTTTGTTGGCCGGAAAATTGG 59.130 47.619 5.05 0.00 0.00 3.16
391 392 0.394565 TTGTTGGCCGGAAAATTGGG 59.605 50.000 5.05 0.00 0.00 4.12
407 408 4.971125 GGCCGAGCCCGCATACTC 62.971 72.222 3.73 0.00 44.06 2.59
411 412 2.805546 GAGCCCGCATACTCGTCA 59.194 61.111 0.00 0.00 0.00 4.35
412 413 1.299468 GAGCCCGCATACTCGTCAG 60.299 63.158 0.00 0.00 0.00 3.51
413 414 1.725557 GAGCCCGCATACTCGTCAGA 61.726 60.000 0.00 0.00 0.00 3.27
414 415 1.141019 GCCCGCATACTCGTCAGAA 59.859 57.895 0.00 0.00 0.00 3.02
415 416 0.249489 GCCCGCATACTCGTCAGAAT 60.249 55.000 0.00 0.00 0.00 2.40
416 417 1.806623 GCCCGCATACTCGTCAGAATT 60.807 52.381 0.00 0.00 0.00 2.17
417 418 2.550978 CCCGCATACTCGTCAGAATTT 58.449 47.619 0.00 0.00 0.00 1.82
418 419 2.936498 CCCGCATACTCGTCAGAATTTT 59.064 45.455 0.00 0.00 0.00 1.82
419 420 3.242413 CCCGCATACTCGTCAGAATTTTG 60.242 47.826 0.00 0.00 0.00 2.44
420 421 3.345714 CGCATACTCGTCAGAATTTTGC 58.654 45.455 0.00 0.00 0.00 3.68
421 422 3.345714 GCATACTCGTCAGAATTTTGCG 58.654 45.455 6.51 6.51 0.00 4.85
422 423 3.785505 GCATACTCGTCAGAATTTTGCGG 60.786 47.826 11.00 6.45 0.00 5.69
423 424 1.156736 ACTCGTCAGAATTTTGCGGG 58.843 50.000 9.87 9.87 0.00 6.13
424 425 1.156736 CTCGTCAGAATTTTGCGGGT 58.843 50.000 11.00 0.00 0.00 5.28
425 426 1.535462 CTCGTCAGAATTTTGCGGGTT 59.465 47.619 11.00 0.00 0.00 4.11
426 427 1.533731 TCGTCAGAATTTTGCGGGTTC 59.466 47.619 11.00 0.00 0.00 3.62
427 428 1.724654 CGTCAGAATTTTGCGGGTTCG 60.725 52.381 5.35 0.00 39.81 3.95
437 438 2.127383 CGGGTTCGCGTCTTTTGC 60.127 61.111 5.77 0.00 0.00 3.68
444 445 3.330275 GCGTCTTTTGCGTGGTCT 58.670 55.556 0.00 0.00 0.00 3.85
445 446 1.082756 GCGTCTTTTGCGTGGTCTG 60.083 57.895 0.00 0.00 0.00 3.51
446 447 1.772063 GCGTCTTTTGCGTGGTCTGT 61.772 55.000 0.00 0.00 0.00 3.41
447 448 0.655733 CGTCTTTTGCGTGGTCTGTT 59.344 50.000 0.00 0.00 0.00 3.16
448 449 1.862201 CGTCTTTTGCGTGGTCTGTTA 59.138 47.619 0.00 0.00 0.00 2.41
449 450 2.096909 CGTCTTTTGCGTGGTCTGTTAG 60.097 50.000 0.00 0.00 0.00 2.34
450 451 3.128349 GTCTTTTGCGTGGTCTGTTAGA 58.872 45.455 0.00 0.00 0.00 2.10
451 452 3.184581 GTCTTTTGCGTGGTCTGTTAGAG 59.815 47.826 0.00 0.00 0.00 2.43
452 453 2.902705 TTTGCGTGGTCTGTTAGAGT 57.097 45.000 0.00 0.00 0.00 3.24
453 454 2.902705 TTGCGTGGTCTGTTAGAGTT 57.097 45.000 0.00 0.00 0.00 3.01
454 455 2.148916 TGCGTGGTCTGTTAGAGTTG 57.851 50.000 0.00 0.00 0.00 3.16
455 456 0.790814 GCGTGGTCTGTTAGAGTTGC 59.209 55.000 0.00 0.00 0.00 4.17
456 457 1.605712 GCGTGGTCTGTTAGAGTTGCT 60.606 52.381 0.00 0.00 0.00 3.91
457 458 2.329379 CGTGGTCTGTTAGAGTTGCTC 58.671 52.381 0.00 0.00 0.00 4.26
458 459 2.689646 GTGGTCTGTTAGAGTTGCTCC 58.310 52.381 0.00 0.00 0.00 4.70
459 460 2.037251 GTGGTCTGTTAGAGTTGCTCCA 59.963 50.000 0.00 0.00 0.00 3.86
460 461 2.703536 TGGTCTGTTAGAGTTGCTCCAA 59.296 45.455 0.00 0.00 0.00 3.53
461 462 3.244215 TGGTCTGTTAGAGTTGCTCCAAG 60.244 47.826 0.00 0.00 0.00 3.61
462 463 3.330267 GTCTGTTAGAGTTGCTCCAAGG 58.670 50.000 0.00 0.00 0.00 3.61
463 464 2.972713 TCTGTTAGAGTTGCTCCAAGGT 59.027 45.455 0.00 0.00 0.00 3.50
464 465 3.391296 TCTGTTAGAGTTGCTCCAAGGTT 59.609 43.478 0.00 0.00 0.00 3.50
465 466 3.476552 TGTTAGAGTTGCTCCAAGGTTG 58.523 45.455 0.00 0.00 0.00 3.77
466 467 3.118038 TGTTAGAGTTGCTCCAAGGTTGT 60.118 43.478 0.00 0.00 0.00 3.32
467 468 4.101898 TGTTAGAGTTGCTCCAAGGTTGTA 59.898 41.667 0.00 0.00 0.00 2.41
468 469 3.857157 AGAGTTGCTCCAAGGTTGTAA 57.143 42.857 0.00 0.00 0.00 2.41
469 470 4.164843 AGAGTTGCTCCAAGGTTGTAAA 57.835 40.909 0.00 0.00 0.00 2.01
470 471 4.137543 AGAGTTGCTCCAAGGTTGTAAAG 58.862 43.478 0.00 0.00 0.00 1.85
471 472 4.134563 GAGTTGCTCCAAGGTTGTAAAGA 58.865 43.478 0.00 0.00 0.00 2.52
472 473 4.532834 AGTTGCTCCAAGGTTGTAAAGAA 58.467 39.130 0.00 0.00 0.00 2.52
473 474 4.953579 AGTTGCTCCAAGGTTGTAAAGAAA 59.046 37.500 0.00 0.00 0.00 2.52
474 475 5.420739 AGTTGCTCCAAGGTTGTAAAGAAAA 59.579 36.000 0.00 0.00 0.00 2.29
475 476 5.923733 TGCTCCAAGGTTGTAAAGAAAAA 57.076 34.783 0.00 0.00 0.00 1.94
476 477 6.478512 TGCTCCAAGGTTGTAAAGAAAAAT 57.521 33.333 0.00 0.00 0.00 1.82
477 478 7.589958 TGCTCCAAGGTTGTAAAGAAAAATA 57.410 32.000 0.00 0.00 0.00 1.40
478 479 7.657336 TGCTCCAAGGTTGTAAAGAAAAATAG 58.343 34.615 0.00 0.00 0.00 1.73
479 480 7.504238 TGCTCCAAGGTTGTAAAGAAAAATAGA 59.496 33.333 0.00 0.00 0.00 1.98
499 500 9.981460 AAATAGATTTAAGATTCTGGGTGAAGT 57.019 29.630 0.00 0.00 38.18 3.01
505 506 2.040412 AGATTCTGGGTGAAGTTGGGTC 59.960 50.000 0.00 0.00 38.18 4.46
509 511 1.074951 GGGTGAAGTTGGGTCAGGG 59.925 63.158 0.00 0.00 0.00 4.45
518 520 1.003233 GTTGGGTCAGGGTCGATTCTT 59.997 52.381 0.00 0.00 0.00 2.52
519 521 2.235402 GTTGGGTCAGGGTCGATTCTTA 59.765 50.000 0.00 0.00 0.00 2.10
526 528 5.880887 GGTCAGGGTCGATTCTTAAAATTCT 59.119 40.000 0.00 0.00 0.00 2.40
529 531 6.818644 TCAGGGTCGATTCTTAAAATTCTGAG 59.181 38.462 0.00 0.00 0.00 3.35
543 545 5.557891 AATTCTGAGAGAATCGGCAAAAG 57.442 39.130 0.00 0.00 43.67 2.27
550 552 5.299279 TGAGAGAATCGGCAAAAGAAAAACT 59.701 36.000 0.00 0.00 42.67 2.66
557 559 3.791353 CGGCAAAAGAAAAACTGAGTGTC 59.209 43.478 0.00 0.00 0.00 3.67
560 562 5.037385 GCAAAAGAAAAACTGAGTGTCCTC 58.963 41.667 0.00 0.00 38.27 3.71
565 567 2.246719 AAACTGAGTGTCCTCTGTGC 57.753 50.000 3.48 0.00 45.78 4.57
567 569 0.965439 ACTGAGTGTCCTCTGTGCTC 59.035 55.000 2.04 0.00 45.07 4.26
573 575 1.216710 GTCCTCTGTGCTCTTCCCG 59.783 63.158 0.00 0.00 0.00 5.14
574 576 1.228894 TCCTCTGTGCTCTTCCCGT 60.229 57.895 0.00 0.00 0.00 5.28
575 577 1.079543 CCTCTGTGCTCTTCCCGTG 60.080 63.158 0.00 0.00 0.00 4.94
576 578 1.739562 CTCTGTGCTCTTCCCGTGC 60.740 63.158 0.00 0.00 0.00 5.34
577 579 2.031012 CTGTGCTCTTCCCGTGCA 59.969 61.111 0.00 0.00 39.60 4.57
581 583 1.090052 GTGCTCTTCCCGTGCATACC 61.090 60.000 0.00 0.00 43.22 2.73
600 614 8.629158 TGCATACCACACATTTATAAATTCTCC 58.371 33.333 8.01 0.00 0.00 3.71
767 784 2.027469 CCCTTTGTTTACTACTCCCGCT 60.027 50.000 0.00 0.00 0.00 5.52
936 953 3.699894 CGCCAGTGGTGAGAGCCT 61.700 66.667 18.34 0.00 34.74 4.58
943 960 2.762887 CAGTGGTGAGAGCCTCAGATAA 59.237 50.000 5.28 0.00 41.46 1.75
957 974 1.474077 CAGATAACCAGTTTGCTGCCC 59.526 52.381 0.00 0.00 41.26 5.36
973 990 1.382146 CCCCCTCCGTTACTGCCTA 60.382 63.158 0.00 0.00 0.00 3.93
1014 1031 2.125350 CTGGGCTCTCTGTTCCGC 60.125 66.667 0.00 0.00 0.00 5.54
1028 1045 1.070776 GTTCCGCGTTCTGTTTCTGTC 60.071 52.381 4.92 0.00 0.00 3.51
1030 1047 1.202486 TCCGCGTTCTGTTTCTGTCTT 60.202 47.619 4.92 0.00 0.00 3.01
1036 1053 3.303395 CGTTCTGTTTCTGTCTTTGCTCC 60.303 47.826 0.00 0.00 0.00 4.70
1038 1055 3.470709 TCTGTTTCTGTCTTTGCTCCTG 58.529 45.455 0.00 0.00 0.00 3.86
1039 1056 3.118261 TCTGTTTCTGTCTTTGCTCCTGT 60.118 43.478 0.00 0.00 0.00 4.00
1040 1057 3.206150 TGTTTCTGTCTTTGCTCCTGTC 58.794 45.455 0.00 0.00 0.00 3.51
1042 1059 0.687354 TCTGTCTTTGCTCCTGTCCC 59.313 55.000 0.00 0.00 0.00 4.46
1043 1060 0.689623 CTGTCTTTGCTCCTGTCCCT 59.310 55.000 0.00 0.00 0.00 4.20
1044 1061 1.072965 CTGTCTTTGCTCCTGTCCCTT 59.927 52.381 0.00 0.00 0.00 3.95
1051 1086 1.625818 TGCTCCTGTCCCTTCTTCTTC 59.374 52.381 0.00 0.00 0.00 2.87
1072 1107 3.204827 GACGCGGCAATGGCATCT 61.205 61.111 7.34 0.00 43.71 2.90
1087 1122 1.063327 ATCTGAGAAGCTCGTCGCG 59.937 57.895 0.00 0.00 45.59 5.87
1340 1379 3.327757 ACACCAACTCACAGTACCATCAT 59.672 43.478 0.00 0.00 0.00 2.45
1371 1410 2.400798 GCGACATGCATCCACGTG 59.599 61.111 9.08 9.08 45.45 4.49
1392 1431 2.922387 GCTGATCGATCGATGGATTGAG 59.078 50.000 33.86 19.77 44.38 3.02
1496 1535 5.065218 GGGCAACATCAATGTAACTACTCTG 59.935 44.000 0.00 0.00 40.80 3.35
1537 1576 2.421388 GGCATGCATCACCAACCTAGTA 60.421 50.000 21.36 0.00 0.00 1.82
1538 1577 3.480470 GCATGCATCACCAACCTAGTAT 58.520 45.455 14.21 0.00 0.00 2.12
1539 1578 4.504864 GGCATGCATCACCAACCTAGTATA 60.505 45.833 21.36 0.00 0.00 1.47
1540 1579 4.692625 GCATGCATCACCAACCTAGTATAG 59.307 45.833 14.21 0.00 38.80 1.31
1541 1580 5.743130 GCATGCATCACCAACCTAGTATAGT 60.743 44.000 14.21 0.00 36.82 2.12
1589 1628 5.048782 TGAACAGCTAATGGTGCAAGTTTAG 60.049 40.000 0.00 0.00 44.77 1.85
1640 1682 0.534427 GGCGGGTGAGGTAATTAGCC 60.534 60.000 10.99 1.94 36.32 3.93
1656 1698 5.871396 ATTAGCCGATTTGACCTCTAGAA 57.129 39.130 0.00 0.00 0.00 2.10
1666 1708 8.600449 GATTTGACCTCTAGAAATCGATTGAT 57.400 34.615 12.25 6.01 35.98 2.57
1983 2188 1.445518 TGGCTTGTCGTCAGAAGCA 59.554 52.632 8.04 0.00 45.36 3.91
2104 2309 0.583438 CGTGTCTGCTGTTTGTCCAG 59.417 55.000 0.00 0.00 35.49 3.86
2208 2413 6.370442 TGTTTCTGATAGGAAATTACCACGTG 59.630 38.462 9.08 9.08 37.50 4.49
2379 2584 2.031465 GAAACCCACGGAAGGCGA 59.969 61.111 0.00 0.00 0.00 5.54
3178 3391 0.905357 AGTCCACCATCTGTACCAGC 59.095 55.000 0.00 0.00 0.00 4.85
3179 3392 0.613260 GTCCACCATCTGTACCAGCA 59.387 55.000 0.00 0.00 0.00 4.41
3180 3393 0.904649 TCCACCATCTGTACCAGCAG 59.095 55.000 0.00 0.00 37.81 4.24
3422 3640 5.512060 GCAAGCTCCAATAGATCCTATGTGA 60.512 44.000 0.00 0.00 0.00 3.58
3423 3641 5.999205 AGCTCCAATAGATCCTATGTGAG 57.001 43.478 0.00 0.00 0.00 3.51
3434 3676 2.965831 TCCTATGTGAGGCATGGAGTAC 59.034 50.000 0.00 0.00 46.25 2.73
3436 3678 0.179073 ATGTGAGGCATGGAGTACGC 60.179 55.000 0.00 0.00 36.26 4.42
3485 5546 2.391389 GCTTTTGGAGGTCGAGGCG 61.391 63.158 0.00 0.00 0.00 5.52
3504 5569 4.342665 AGGCGAGGTGGTTATTTTGAAAAA 59.657 37.500 0.00 0.00 0.00 1.94
3614 5680 7.281841 TCTGATGCTGAAATACATTATGGTGA 58.718 34.615 0.00 0.00 0.00 4.02
3656 5722 7.647907 AAATCACAAATTGAAACTGATGAGC 57.352 32.000 0.00 0.00 37.92 4.26
3657 5723 5.771153 TCACAAATTGAAACTGATGAGCA 57.229 34.783 0.00 0.00 0.00 4.26
3658 5724 5.522456 TCACAAATTGAAACTGATGAGCAC 58.478 37.500 0.00 0.00 0.00 4.40
3659 5725 5.300034 TCACAAATTGAAACTGATGAGCACT 59.700 36.000 0.00 0.00 0.00 4.40
3660 5726 5.401376 CACAAATTGAAACTGATGAGCACTG 59.599 40.000 0.00 0.00 0.00 3.66
3661 5727 5.068198 ACAAATTGAAACTGATGAGCACTGT 59.932 36.000 0.00 0.00 0.00 3.55
3663 5729 4.818534 TTGAAACTGATGAGCACTGTTC 57.181 40.909 0.00 0.00 0.00 3.18
3664 5730 3.807553 TGAAACTGATGAGCACTGTTCA 58.192 40.909 0.00 0.00 0.00 3.18
3665 5731 3.561310 TGAAACTGATGAGCACTGTTCAC 59.439 43.478 0.00 0.00 0.00 3.18
3667 5733 4.607293 AACTGATGAGCACTGTTCACTA 57.393 40.909 0.00 0.00 0.00 2.74
3668 5734 4.815533 ACTGATGAGCACTGTTCACTAT 57.184 40.909 0.00 0.00 0.00 2.12
3669 5735 5.157940 ACTGATGAGCACTGTTCACTATT 57.842 39.130 0.00 0.00 0.00 1.73
3670 5736 6.286240 ACTGATGAGCACTGTTCACTATTA 57.714 37.500 0.00 0.00 0.00 0.98
3672 5738 6.153510 ACTGATGAGCACTGTTCACTATTAGA 59.846 38.462 0.00 0.00 0.00 2.10
3673 5739 6.935167 TGATGAGCACTGTTCACTATTAGAA 58.065 36.000 0.00 0.00 0.00 2.10
3674 5740 7.386059 TGATGAGCACTGTTCACTATTAGAAA 58.614 34.615 0.00 0.00 0.00 2.52
3675 5741 8.043113 TGATGAGCACTGTTCACTATTAGAAAT 58.957 33.333 0.00 0.00 0.00 2.17
3676 5742 7.601073 TGAGCACTGTTCACTATTAGAAATG 57.399 36.000 0.00 0.00 0.00 2.32
3680 5746 6.676456 GCACTGTTCACTATTAGAAATGCAGG 60.676 42.308 0.00 0.00 33.90 4.85
3681 5747 6.595326 CACTGTTCACTATTAGAAATGCAGGA 59.405 38.462 0.00 0.00 0.00 3.86
3848 5927 4.715534 TTCAAAGTAACCACCTCCATGA 57.284 40.909 0.00 0.00 0.00 3.07
3857 5936 1.352352 CCACCTCCATGAAAGTCACCT 59.648 52.381 0.00 0.00 0.00 4.00
3885 5964 6.916360 TTGGCATTTTCCTATTTGTCTTCT 57.084 33.333 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.712663 GAGACGGACGAGTACGACC 59.287 63.158 15.36 5.95 46.96 4.79
3 4 1.343147 CGAGACGGACGAGTACGAC 59.657 63.158 15.36 8.57 39.85 4.34
4 5 2.447887 GCGAGACGGACGAGTACGA 61.448 63.158 15.36 0.00 39.85 3.43
5 6 2.021106 GCGAGACGGACGAGTACG 59.979 66.667 6.28 6.28 43.89 3.67
6 7 2.021106 CGCGAGACGGACGAGTAC 59.979 66.667 0.00 0.00 38.44 2.73
50 51 1.374252 CGAGGAAGTGGACCAACCG 60.374 63.158 0.00 0.00 42.61 4.44
51 52 1.671379 GCGAGGAAGTGGACCAACC 60.671 63.158 0.00 0.17 39.54 3.77
52 53 1.671379 GGCGAGGAAGTGGACCAAC 60.671 63.158 0.00 0.00 0.00 3.77
53 54 2.747686 GGCGAGGAAGTGGACCAA 59.252 61.111 0.00 0.00 0.00 3.67
54 55 3.319198 GGGCGAGGAAGTGGACCA 61.319 66.667 0.00 0.00 0.00 4.02
55 56 4.097361 GGGGCGAGGAAGTGGACC 62.097 72.222 0.00 0.00 0.00 4.46
56 57 3.319198 TGGGGCGAGGAAGTGGAC 61.319 66.667 0.00 0.00 0.00 4.02
57 58 3.319198 GTGGGGCGAGGAAGTGGA 61.319 66.667 0.00 0.00 0.00 4.02
58 59 4.760047 CGTGGGGCGAGGAAGTGG 62.760 72.222 0.00 0.00 44.77 4.00
142 143 4.443266 AGCTCTGGACGCGGCTTC 62.443 66.667 13.91 0.00 0.00 3.86
143 144 4.443266 GAGCTCTGGACGCGGCTT 62.443 66.667 13.91 0.00 35.01 4.35
146 147 4.803426 GTGGAGCTCTGGACGCGG 62.803 72.222 14.64 0.00 0.00 6.46
147 148 2.004808 TATGTGGAGCTCTGGACGCG 62.005 60.000 14.64 3.53 0.00 6.01
148 149 0.528684 GTATGTGGAGCTCTGGACGC 60.529 60.000 14.64 3.94 0.00 5.19
149 150 0.248661 CGTATGTGGAGCTCTGGACG 60.249 60.000 14.64 12.31 0.00 4.79
150 151 1.103803 TCGTATGTGGAGCTCTGGAC 58.896 55.000 14.64 8.74 0.00 4.02
151 152 1.103803 GTCGTATGTGGAGCTCTGGA 58.896 55.000 14.64 0.00 0.00 3.86
152 153 0.103208 GGTCGTATGTGGAGCTCTGG 59.897 60.000 14.64 0.00 0.00 3.86
153 154 0.103208 GGGTCGTATGTGGAGCTCTG 59.897 60.000 14.64 0.00 32.69 3.35
154 155 1.043673 GGGGTCGTATGTGGAGCTCT 61.044 60.000 14.64 0.00 32.69 4.09
155 156 1.327690 TGGGGTCGTATGTGGAGCTC 61.328 60.000 4.71 4.71 33.08 4.09
156 157 1.305802 TGGGGTCGTATGTGGAGCT 60.306 57.895 0.00 0.00 32.69 4.09
157 158 1.153429 GTGGGGTCGTATGTGGAGC 60.153 63.158 0.00 0.00 0.00 4.70
158 159 0.830648 ATGTGGGGTCGTATGTGGAG 59.169 55.000 0.00 0.00 0.00 3.86
159 160 0.539518 CATGTGGGGTCGTATGTGGA 59.460 55.000 0.00 0.00 0.00 4.02
160 161 0.463654 CCATGTGGGGTCGTATGTGG 60.464 60.000 0.00 0.00 0.00 4.17
161 162 1.095228 GCCATGTGGGGTCGTATGTG 61.095 60.000 0.54 0.00 37.04 3.21
162 163 1.223487 GCCATGTGGGGTCGTATGT 59.777 57.895 0.54 0.00 37.04 2.29
163 164 0.815213 CTGCCATGTGGGGTCGTATG 60.815 60.000 0.54 0.00 37.04 2.39
164 165 1.526887 CTGCCATGTGGGGTCGTAT 59.473 57.895 0.54 0.00 37.04 3.06
165 166 2.986290 CTGCCATGTGGGGTCGTA 59.014 61.111 0.54 0.00 37.04 3.43
166 167 4.722700 GCTGCCATGTGGGGTCGT 62.723 66.667 0.54 0.00 37.04 4.34
167 168 4.415150 AGCTGCCATGTGGGGTCG 62.415 66.667 0.54 0.00 37.04 4.79
168 169 2.753043 CAGCTGCCATGTGGGGTC 60.753 66.667 0.00 0.00 37.04 4.46
169 170 4.371417 CCAGCTGCCATGTGGGGT 62.371 66.667 8.66 0.00 37.04 4.95
170 171 4.051167 TCCAGCTGCCATGTGGGG 62.051 66.667 8.66 0.00 37.04 4.96
171 172 2.439701 CTCCAGCTGCCATGTGGG 60.440 66.667 8.66 0.00 40.85 4.61
172 173 2.439701 CCTCCAGCTGCCATGTGG 60.440 66.667 8.66 1.07 38.53 4.17
173 174 3.138798 GCCTCCAGCTGCCATGTG 61.139 66.667 8.66 0.00 38.99 3.21
174 175 4.790962 CGCCTCCAGCTGCCATGT 62.791 66.667 8.66 0.00 40.39 3.21
180 181 4.479993 CCCTTCCGCCTCCAGCTG 62.480 72.222 6.78 6.78 40.39 4.24
202 203 1.154225 CACATTTCTCGCCGTTGGC 60.154 57.895 0.00 0.00 46.75 4.52
203 204 0.953471 TCCACATTTCTCGCCGTTGG 60.953 55.000 0.00 0.00 0.00 3.77
204 205 0.443869 CTCCACATTTCTCGCCGTTG 59.556 55.000 0.00 0.00 0.00 4.10
205 206 0.320374 TCTCCACATTTCTCGCCGTT 59.680 50.000 0.00 0.00 0.00 4.44
206 207 0.108615 CTCTCCACATTTCTCGCCGT 60.109 55.000 0.00 0.00 0.00 5.68
207 208 0.807667 CCTCTCCACATTTCTCGCCG 60.808 60.000 0.00 0.00 0.00 6.46
208 209 0.462759 CCCTCTCCACATTTCTCGCC 60.463 60.000 0.00 0.00 0.00 5.54
209 210 0.462759 CCCCTCTCCACATTTCTCGC 60.463 60.000 0.00 0.00 0.00 5.03
210 211 0.179000 CCCCCTCTCCACATTTCTCG 59.821 60.000 0.00 0.00 0.00 4.04
211 212 1.065126 CACCCCCTCTCCACATTTCTC 60.065 57.143 0.00 0.00 0.00 2.87
212 213 0.995024 CACCCCCTCTCCACATTTCT 59.005 55.000 0.00 0.00 0.00 2.52
213 214 0.034089 CCACCCCCTCTCCACATTTC 60.034 60.000 0.00 0.00 0.00 2.17
214 215 1.509548 CCCACCCCCTCTCCACATTT 61.510 60.000 0.00 0.00 0.00 2.32
215 216 1.930656 CCCACCCCCTCTCCACATT 60.931 63.158 0.00 0.00 0.00 2.71
216 217 2.286425 CCCACCCCCTCTCCACAT 60.286 66.667 0.00 0.00 0.00 3.21
217 218 4.675303 CCCCACCCCCTCTCCACA 62.675 72.222 0.00 0.00 0.00 4.17
218 219 3.883822 TTCCCCACCCCCTCTCCAC 62.884 68.421 0.00 0.00 0.00 4.02
219 220 2.446337 AATTCCCCACCCCCTCTCCA 62.446 60.000 0.00 0.00 0.00 3.86
220 221 1.622752 AATTCCCCACCCCCTCTCC 60.623 63.158 0.00 0.00 0.00 3.71
221 222 1.615262 CAATTCCCCACCCCCTCTC 59.385 63.158 0.00 0.00 0.00 3.20
222 223 2.626467 GCAATTCCCCACCCCCTCT 61.626 63.158 0.00 0.00 0.00 3.69
223 224 2.042944 GCAATTCCCCACCCCCTC 60.043 66.667 0.00 0.00 0.00 4.30
224 225 4.060667 CGCAATTCCCCACCCCCT 62.061 66.667 0.00 0.00 0.00 4.79
225 226 2.904178 CTACGCAATTCCCCACCCCC 62.904 65.000 0.00 0.00 0.00 5.40
226 227 1.453197 CTACGCAATTCCCCACCCC 60.453 63.158 0.00 0.00 0.00 4.95
227 228 2.119029 GCTACGCAATTCCCCACCC 61.119 63.158 0.00 0.00 0.00 4.61
228 229 1.077716 AGCTACGCAATTCCCCACC 60.078 57.895 0.00 0.00 0.00 4.61
229 230 1.429148 CGAGCTACGCAATTCCCCAC 61.429 60.000 0.00 0.00 34.51 4.61
230 231 1.153449 CGAGCTACGCAATTCCCCA 60.153 57.895 0.00 0.00 34.51 4.96
231 232 1.887707 CCGAGCTACGCAATTCCCC 60.888 63.158 0.00 0.00 41.07 4.81
232 233 2.534903 GCCGAGCTACGCAATTCCC 61.535 63.158 0.00 0.00 41.07 3.97
233 234 2.871427 CGCCGAGCTACGCAATTCC 61.871 63.158 5.43 0.00 41.07 3.01
234 235 2.621000 CGCCGAGCTACGCAATTC 59.379 61.111 5.43 0.00 41.07 2.17
235 236 2.890474 CCGCCGAGCTACGCAATT 60.890 61.111 5.43 0.00 41.07 2.32
252 253 2.990830 GAAACCTATCCCTCCGCCGC 62.991 65.000 0.00 0.00 0.00 6.53
253 254 1.069258 GAAACCTATCCCTCCGCCG 59.931 63.158 0.00 0.00 0.00 6.46
254 255 0.544697 TTGAAACCTATCCCTCCGCC 59.455 55.000 0.00 0.00 0.00 6.13
255 256 1.664873 GTTGAAACCTATCCCTCCGC 58.335 55.000 0.00 0.00 0.00 5.54
256 257 2.327200 GGTTGAAACCTATCCCTCCG 57.673 55.000 4.92 0.00 45.75 4.63
284 285 2.467946 ATATCTACGGGTTCGCGGCG 62.468 60.000 17.70 17.70 40.63 6.46
285 286 0.523072 TATATCTACGGGTTCGCGGC 59.477 55.000 6.13 0.00 40.63 6.53
286 287 1.808945 AGTATATCTACGGGTTCGCGG 59.191 52.381 6.13 0.00 40.63 6.46
287 288 2.413765 CCAGTATATCTACGGGTTCGCG 60.414 54.545 0.00 0.00 38.12 5.87
288 289 3.213249 CCAGTATATCTACGGGTTCGC 57.787 52.381 0.07 0.00 38.12 4.70
293 294 2.089980 CCCGACCAGTATATCTACGGG 58.910 57.143 0.00 0.00 45.57 5.28
294 295 2.089980 CCCCGACCAGTATATCTACGG 58.910 57.143 0.00 0.00 36.81 4.02
295 296 1.471684 GCCCCGACCAGTATATCTACG 59.528 57.143 0.00 0.00 32.82 3.51
296 297 1.471684 CGCCCCGACCAGTATATCTAC 59.528 57.143 0.00 0.00 0.00 2.59
297 298 1.074405 ACGCCCCGACCAGTATATCTA 59.926 52.381 0.00 0.00 0.00 1.98
298 299 0.178970 ACGCCCCGACCAGTATATCT 60.179 55.000 0.00 0.00 0.00 1.98
299 300 0.038526 CACGCCCCGACCAGTATATC 60.039 60.000 0.00 0.00 0.00 1.63
300 301 2.046938 CACGCCCCGACCAGTATAT 58.953 57.895 0.00 0.00 0.00 0.86
301 302 2.788640 GCACGCCCCGACCAGTATA 61.789 63.158 0.00 0.00 0.00 1.47
302 303 4.157120 GCACGCCCCGACCAGTAT 62.157 66.667 0.00 0.00 0.00 2.12
326 327 0.099791 AAATAATTTGTCGCGGCCCG 59.900 50.000 8.89 0.00 38.61 6.13
327 328 2.287393 AAAATAATTTGTCGCGGCCC 57.713 45.000 8.89 0.00 0.00 5.80
328 329 2.779471 CGTAAAATAATTTGTCGCGGCC 59.221 45.455 8.89 0.00 0.00 6.13
329 330 2.779471 CCGTAAAATAATTTGTCGCGGC 59.221 45.455 2.29 2.29 30.56 6.53
330 331 3.356145 CCCGTAAAATAATTTGTCGCGG 58.644 45.455 6.13 0.00 34.16 6.46
331 332 2.779471 GCCCGTAAAATAATTTGTCGCG 59.221 45.455 0.00 0.00 0.00 5.87
332 333 3.110358 GGCCCGTAAAATAATTTGTCGC 58.890 45.455 0.00 0.00 0.00 5.19
333 334 3.063725 TCGGCCCGTAAAATAATTTGTCG 59.936 43.478 1.63 0.00 0.00 4.35
334 335 4.619437 TCGGCCCGTAAAATAATTTGTC 57.381 40.909 1.63 0.00 0.00 3.18
335 336 4.672283 CGTTCGGCCCGTAAAATAATTTGT 60.672 41.667 1.63 0.00 0.00 2.83
336 337 3.787105 CGTTCGGCCCGTAAAATAATTTG 59.213 43.478 1.63 0.00 0.00 2.32
337 338 3.688673 TCGTTCGGCCCGTAAAATAATTT 59.311 39.130 1.63 0.00 0.00 1.82
338 339 3.269178 TCGTTCGGCCCGTAAAATAATT 58.731 40.909 1.63 0.00 0.00 1.40
339 340 2.867975 CTCGTTCGGCCCGTAAAATAAT 59.132 45.455 1.63 0.00 0.00 1.28
340 341 2.270047 CTCGTTCGGCCCGTAAAATAA 58.730 47.619 1.63 0.00 0.00 1.40
341 342 1.204467 ACTCGTTCGGCCCGTAAAATA 59.796 47.619 1.63 0.00 0.00 1.40
342 343 0.037046 ACTCGTTCGGCCCGTAAAAT 60.037 50.000 1.63 0.00 0.00 1.82
343 344 0.600557 TACTCGTTCGGCCCGTAAAA 59.399 50.000 1.63 0.00 0.00 1.52
344 345 0.817013 ATACTCGTTCGGCCCGTAAA 59.183 50.000 1.63 0.00 0.00 2.01
345 346 0.101040 CATACTCGTTCGGCCCGTAA 59.899 55.000 1.63 0.00 0.00 3.18
346 347 1.031571 ACATACTCGTTCGGCCCGTA 61.032 55.000 1.63 0.00 0.00 4.02
347 348 1.880819 AACATACTCGTTCGGCCCGT 61.881 55.000 1.63 0.00 0.00 5.28
348 349 0.738412 AAACATACTCGTTCGGCCCG 60.738 55.000 0.00 0.00 0.00 6.13
349 350 1.129811 CAAAACATACTCGTTCGGCCC 59.870 52.381 0.00 0.00 0.00 5.80
350 351 1.129811 CCAAAACATACTCGTTCGGCC 59.870 52.381 0.00 0.00 0.00 6.13
351 352 1.802365 ACCAAAACATACTCGTTCGGC 59.198 47.619 0.00 0.00 0.00 5.54
352 353 4.215965 CAAACCAAAACATACTCGTTCGG 58.784 43.478 0.00 0.00 0.00 4.30
353 354 4.839796 ACAAACCAAAACATACTCGTTCG 58.160 39.130 0.00 0.00 0.00 3.95
354 355 5.457473 CCAACAAACCAAAACATACTCGTTC 59.543 40.000 0.00 0.00 0.00 3.95
355 356 5.344884 CCAACAAACCAAAACATACTCGTT 58.655 37.500 0.00 0.00 0.00 3.85
356 357 4.735283 GCCAACAAACCAAAACATACTCGT 60.735 41.667 0.00 0.00 0.00 4.18
357 358 3.733727 GCCAACAAACCAAAACATACTCG 59.266 43.478 0.00 0.00 0.00 4.18
358 359 4.055360 GGCCAACAAACCAAAACATACTC 58.945 43.478 0.00 0.00 0.00 2.59
359 360 3.491792 CGGCCAACAAACCAAAACATACT 60.492 43.478 2.24 0.00 0.00 2.12
360 361 2.797719 CGGCCAACAAACCAAAACATAC 59.202 45.455 2.24 0.00 0.00 2.39
361 362 2.224066 CCGGCCAACAAACCAAAACATA 60.224 45.455 2.24 0.00 0.00 2.29
362 363 1.474143 CCGGCCAACAAACCAAAACAT 60.474 47.619 2.24 0.00 0.00 2.71
363 364 0.108138 CCGGCCAACAAACCAAAACA 60.108 50.000 2.24 0.00 0.00 2.83
364 365 0.175989 TCCGGCCAACAAACCAAAAC 59.824 50.000 2.24 0.00 0.00 2.43
365 366 0.902531 TTCCGGCCAACAAACCAAAA 59.097 45.000 2.24 0.00 0.00 2.44
366 367 0.902531 TTTCCGGCCAACAAACCAAA 59.097 45.000 2.24 0.00 0.00 3.28
367 368 0.902531 TTTTCCGGCCAACAAACCAA 59.097 45.000 2.24 0.00 0.00 3.67
368 369 1.123928 ATTTTCCGGCCAACAAACCA 58.876 45.000 2.24 0.00 0.00 3.67
369 370 1.870402 CAATTTTCCGGCCAACAAACC 59.130 47.619 2.24 0.00 0.00 3.27
370 371 1.870402 CCAATTTTCCGGCCAACAAAC 59.130 47.619 2.24 0.00 0.00 2.93
371 372 1.202698 CCCAATTTTCCGGCCAACAAA 60.203 47.619 2.24 0.00 0.00 2.83
372 373 0.394565 CCCAATTTTCCGGCCAACAA 59.605 50.000 2.24 0.00 0.00 2.83
373 374 2.053618 CCCAATTTTCCGGCCAACA 58.946 52.632 2.24 0.00 0.00 3.33
374 375 1.375396 GCCCAATTTTCCGGCCAAC 60.375 57.895 2.24 0.00 36.63 3.77
375 376 3.064416 GCCCAATTTTCCGGCCAA 58.936 55.556 2.24 0.00 36.63 4.52
378 379 3.063743 CTCGGCCCAATTTTCCGGC 62.064 63.158 0.00 2.83 43.10 6.13
379 380 3.063743 GCTCGGCCCAATTTTCCGG 62.064 63.158 0.00 0.00 43.10 5.14
380 381 2.489751 GCTCGGCCCAATTTTCCG 59.510 61.111 0.00 4.00 44.16 4.30
381 382 2.892640 GGCTCGGCCCAATTTTCC 59.107 61.111 0.00 0.00 44.06 3.13
394 395 1.299468 CTGACGAGTATGCGGGCTC 60.299 63.158 0.00 0.00 35.12 4.70
395 396 1.320344 TTCTGACGAGTATGCGGGCT 61.320 55.000 0.00 0.00 35.12 5.19
396 397 0.249489 ATTCTGACGAGTATGCGGGC 60.249 55.000 0.00 0.00 35.12 6.13
397 398 2.225068 AATTCTGACGAGTATGCGGG 57.775 50.000 0.00 0.00 35.12 6.13
398 399 3.785505 GCAAAATTCTGACGAGTATGCGG 60.786 47.826 0.00 0.00 35.12 5.69
399 400 3.345714 GCAAAATTCTGACGAGTATGCG 58.654 45.455 0.00 0.00 37.29 4.73
400 401 3.345714 CGCAAAATTCTGACGAGTATGC 58.654 45.455 0.00 0.00 0.00 3.14
401 402 3.242413 CCCGCAAAATTCTGACGAGTATG 60.242 47.826 0.00 0.00 0.00 2.39
402 403 2.936498 CCCGCAAAATTCTGACGAGTAT 59.064 45.455 0.00 0.00 0.00 2.12
403 404 2.289195 ACCCGCAAAATTCTGACGAGTA 60.289 45.455 0.00 0.00 0.00 2.59
404 405 1.156736 CCCGCAAAATTCTGACGAGT 58.843 50.000 0.00 0.00 0.00 4.18
405 406 1.156736 ACCCGCAAAATTCTGACGAG 58.843 50.000 0.00 0.00 0.00 4.18
406 407 1.533731 GAACCCGCAAAATTCTGACGA 59.466 47.619 0.00 0.00 0.00 4.20
407 408 1.724654 CGAACCCGCAAAATTCTGACG 60.725 52.381 0.00 0.00 0.00 4.35
408 409 1.963747 CGAACCCGCAAAATTCTGAC 58.036 50.000 0.00 0.00 0.00 3.51
420 421 2.127383 GCAAAAGACGCGAACCCG 60.127 61.111 15.93 0.00 39.16 5.28
427 428 1.082756 CAGACCACGCAAAAGACGC 60.083 57.895 0.00 0.00 0.00 5.19
428 429 0.655733 AACAGACCACGCAAAAGACG 59.344 50.000 0.00 0.00 0.00 4.18
429 430 3.128349 TCTAACAGACCACGCAAAAGAC 58.872 45.455 0.00 0.00 0.00 3.01
430 431 3.181469 ACTCTAACAGACCACGCAAAAGA 60.181 43.478 0.00 0.00 0.00 2.52
431 432 3.131396 ACTCTAACAGACCACGCAAAAG 58.869 45.455 0.00 0.00 0.00 2.27
432 433 3.188159 ACTCTAACAGACCACGCAAAA 57.812 42.857 0.00 0.00 0.00 2.44
433 434 2.869801 CAACTCTAACAGACCACGCAAA 59.130 45.455 0.00 0.00 0.00 3.68
434 435 2.479837 CAACTCTAACAGACCACGCAA 58.520 47.619 0.00 0.00 0.00 4.85
435 436 1.872237 GCAACTCTAACAGACCACGCA 60.872 52.381 0.00 0.00 0.00 5.24
436 437 0.790814 GCAACTCTAACAGACCACGC 59.209 55.000 0.00 0.00 0.00 5.34
437 438 2.329379 GAGCAACTCTAACAGACCACG 58.671 52.381 0.00 0.00 0.00 4.94
438 439 2.037251 TGGAGCAACTCTAACAGACCAC 59.963 50.000 0.00 0.00 0.00 4.16
439 440 2.325484 TGGAGCAACTCTAACAGACCA 58.675 47.619 0.00 0.00 0.00 4.02
440 441 3.330267 CTTGGAGCAACTCTAACAGACC 58.670 50.000 0.00 0.00 28.50 3.85
441 442 3.244249 ACCTTGGAGCAACTCTAACAGAC 60.244 47.826 0.00 0.00 28.50 3.51
442 443 2.972713 ACCTTGGAGCAACTCTAACAGA 59.027 45.455 0.00 0.00 28.50 3.41
443 444 3.409026 ACCTTGGAGCAACTCTAACAG 57.591 47.619 0.00 0.00 28.50 3.16
444 445 3.118038 ACAACCTTGGAGCAACTCTAACA 60.118 43.478 0.00 0.00 28.50 2.41
445 446 3.477530 ACAACCTTGGAGCAACTCTAAC 58.522 45.455 0.00 0.00 28.50 2.34
446 447 3.857157 ACAACCTTGGAGCAACTCTAA 57.143 42.857 0.00 0.00 30.63 2.10
447 448 4.967084 TTACAACCTTGGAGCAACTCTA 57.033 40.909 0.00 0.00 0.00 2.43
448 449 3.857157 TTACAACCTTGGAGCAACTCT 57.143 42.857 0.00 0.00 0.00 3.24
449 450 4.134563 TCTTTACAACCTTGGAGCAACTC 58.865 43.478 0.00 0.00 0.00 3.01
450 451 4.164843 TCTTTACAACCTTGGAGCAACT 57.835 40.909 0.00 0.00 0.00 3.16
451 452 4.911514 TTCTTTACAACCTTGGAGCAAC 57.088 40.909 0.00 0.00 0.00 4.17
452 453 5.923733 TTTTCTTTACAACCTTGGAGCAA 57.076 34.783 0.00 0.00 0.00 3.91
453 454 5.923733 TTTTTCTTTACAACCTTGGAGCA 57.076 34.783 0.00 0.00 0.00 4.26
454 455 7.882179 TCTATTTTTCTTTACAACCTTGGAGC 58.118 34.615 0.00 0.00 0.00 4.70
473 474 9.981460 ACTTCACCCAGAATCTTAAATCTATTT 57.019 29.630 0.00 0.00 35.25 1.40
474 475 9.981460 AACTTCACCCAGAATCTTAAATCTATT 57.019 29.630 0.00 0.00 35.25 1.73
475 476 9.401058 CAACTTCACCCAGAATCTTAAATCTAT 57.599 33.333 0.00 0.00 35.25 1.98
476 477 7.829211 CCAACTTCACCCAGAATCTTAAATCTA 59.171 37.037 0.00 0.00 35.25 1.98
477 478 6.660949 CCAACTTCACCCAGAATCTTAAATCT 59.339 38.462 0.00 0.00 35.25 2.40
478 479 6.127619 CCCAACTTCACCCAGAATCTTAAATC 60.128 42.308 0.00 0.00 35.25 2.17
479 480 5.716703 CCCAACTTCACCCAGAATCTTAAAT 59.283 40.000 0.00 0.00 35.25 1.40
482 483 3.655777 ACCCAACTTCACCCAGAATCTTA 59.344 43.478 0.00 0.00 35.25 2.10
492 493 0.250770 GACCCTGACCCAACTTCACC 60.251 60.000 0.00 0.00 0.00 4.02
494 495 0.761323 TCGACCCTGACCCAACTTCA 60.761 55.000 0.00 0.00 0.00 3.02
496 497 1.003233 GAATCGACCCTGACCCAACTT 59.997 52.381 0.00 0.00 0.00 2.66
499 500 1.358152 AAGAATCGACCCTGACCCAA 58.642 50.000 0.00 0.00 0.00 4.12
505 506 6.818644 TCTCAGAATTTTAAGAATCGACCCTG 59.181 38.462 0.00 0.00 0.00 4.45
518 520 7.390440 TCTTTTGCCGATTCTCTCAGAATTTTA 59.610 33.333 0.37 0.00 44.41 1.52
519 521 5.964958 TTTGCCGATTCTCTCAGAATTTT 57.035 34.783 0.37 0.00 44.41 1.82
526 528 5.299279 AGTTTTTCTTTTGCCGATTCTCTCA 59.701 36.000 0.00 0.00 0.00 3.27
529 531 5.519722 TCAGTTTTTCTTTTGCCGATTCTC 58.480 37.500 0.00 0.00 0.00 2.87
543 545 3.002759 GCACAGAGGACACTCAGTTTTTC 59.997 47.826 0.00 0.00 46.44 2.29
550 552 1.615883 GAAGAGCACAGAGGACACTCA 59.384 52.381 0.00 0.00 46.44 3.41
557 559 1.079543 CACGGGAAGAGCACAGAGG 60.080 63.158 0.00 0.00 0.00 3.69
560 562 2.031012 TGCACGGGAAGAGCACAG 59.969 61.111 0.00 0.00 41.41 3.66
565 567 0.249120 TGTGGTATGCACGGGAAGAG 59.751 55.000 0.00 0.00 0.00 2.85
567 569 0.321210 TGTGTGGTATGCACGGGAAG 60.321 55.000 0.00 0.00 39.53 3.46
573 575 9.450807 GAGAATTTATAAATGTGTGGTATGCAC 57.549 33.333 11.42 0.00 37.37 4.57
574 576 8.629158 GGAGAATTTATAAATGTGTGGTATGCA 58.371 33.333 11.42 0.00 0.00 3.96
575 577 7.803189 CGGAGAATTTATAAATGTGTGGTATGC 59.197 37.037 11.42 0.00 0.00 3.14
576 578 8.836413 ACGGAGAATTTATAAATGTGTGGTATG 58.164 33.333 11.42 0.04 0.00 2.39
577 579 8.974060 ACGGAGAATTTATAAATGTGTGGTAT 57.026 30.769 11.42 0.00 0.00 2.73
581 583 6.036735 ACGGACGGAGAATTTATAAATGTGTG 59.963 38.462 11.42 4.32 0.00 3.82
767 784 5.106555 GGAGAGAAAACTGCGAATGATTTGA 60.107 40.000 0.00 0.00 0.00 2.69
936 953 2.436417 GGCAGCAAACTGGTTATCTGA 58.564 47.619 10.02 0.00 44.63 3.27
943 960 3.511610 AGGGGGCAGCAAACTGGT 61.512 61.111 0.00 0.00 44.63 4.00
957 974 0.686769 AGGTAGGCAGTAACGGAGGG 60.687 60.000 0.00 0.00 0.00 4.30
1014 1031 3.303395 GGAGCAAAGACAGAAACAGAACG 60.303 47.826 0.00 0.00 0.00 3.95
1028 1045 2.039613 AGAAGAAGGGACAGGAGCAAAG 59.960 50.000 0.00 0.00 0.00 2.77
1030 1047 1.734655 AGAAGAAGGGACAGGAGCAA 58.265 50.000 0.00 0.00 0.00 3.91
1036 1053 2.027653 GTCAGGGAAGAAGAAGGGACAG 60.028 54.545 0.00 0.00 0.00 3.51
1038 1055 1.066787 CGTCAGGGAAGAAGAAGGGAC 60.067 57.143 0.00 0.00 0.00 4.46
1039 1056 1.267121 CGTCAGGGAAGAAGAAGGGA 58.733 55.000 0.00 0.00 0.00 4.20
1040 1057 0.391793 GCGTCAGGGAAGAAGAAGGG 60.392 60.000 0.00 0.00 0.00 3.95
1042 1059 0.737715 CCGCGTCAGGGAAGAAGAAG 60.738 60.000 4.92 0.00 0.00 2.85
1043 1060 1.292223 CCGCGTCAGGGAAGAAGAA 59.708 57.895 4.92 0.00 0.00 2.52
1044 1061 2.970639 CCGCGTCAGGGAAGAAGA 59.029 61.111 4.92 0.00 0.00 2.87
1072 1107 2.481009 CTCGCGACGAGCTTCTCA 59.519 61.111 3.71 0.00 46.75 3.27
1087 1122 1.077858 CCTGAGCCTGCCTTTCCTC 60.078 63.158 0.00 0.00 0.00 3.71
1173 1208 2.270352 AAGAACGGCTTGGAACATGA 57.730 45.000 0.00 0.00 39.30 3.07
1371 1410 2.922387 CTCAATCCATCGATCGATCAGC 59.078 50.000 27.20 0.00 31.62 4.26
1392 1431 2.650778 CCAGCCGCCCTGAAAAAC 59.349 61.111 3.22 0.00 44.64 2.43
1496 1535 3.065925 GCCAAGGAAAGATATGTGTGAGC 59.934 47.826 0.00 0.00 0.00 4.26
1741 1783 9.194972 AGATTTTATCAAGAGAGAAAAATCCCC 57.805 33.333 16.74 3.67 45.01 4.81
1800 2005 0.687354 TCCTTGTCTTGTCTCCTGGC 59.313 55.000 0.00 0.00 0.00 4.85
1843 2048 4.116961 CCACGTCACACCGAATATGTAAT 58.883 43.478 0.00 0.00 0.00 1.89
1983 2188 4.230455 TGAAAATTGTTCCAGGGGACAAT 58.770 39.130 17.48 17.48 36.10 2.71
2104 2309 2.939103 AGCTGATTGTTTAGATCGGTGC 59.061 45.455 0.00 0.00 33.39 5.01
2379 2584 4.804420 TCCGCTGGGGAGAGCCAT 62.804 66.667 9.69 0.00 40.94 4.40
2536 2741 3.573626 TGCTTATGCACATGCCAGA 57.426 47.368 0.00 0.00 45.31 3.86
2656 2861 9.656040 ATCAGATGATATTTCTGTCTGCTTATC 57.344 33.333 13.36 0.00 41.13 1.75
2936 3142 6.567687 TGACAAAATATGTTGAACCACGAT 57.432 33.333 12.75 0.00 44.12 3.73
3105 3318 1.607467 ACTGGTGATTGCTTGGCCC 60.607 57.895 0.00 0.00 0.00 5.80
3180 3393 3.023591 GCAAGTTGTAGCGGTCGGC 62.024 63.158 4.48 0.00 44.05 5.54
3221 3437 0.107456 CCCTGATGCGCCTCTACAAT 59.893 55.000 13.93 0.00 0.00 2.71
3434 3676 1.605232 AGGGTTAAAGTTCGTTTGGCG 59.395 47.619 0.00 0.00 43.01 5.69
3436 3678 5.278604 CAAAGAGGGTTAAAGTTCGTTTGG 58.721 41.667 0.00 0.00 0.00 3.28
3594 5660 5.528690 GCTCTCACCATAATGTATTTCAGCA 59.471 40.000 0.00 0.00 0.00 4.41
3604 5670 6.741992 TTTTGTGTAGCTCTCACCATAATG 57.258 37.500 15.99 0.00 35.25 1.90
3630 5696 9.195411 GCTCATCAGTTTCAATTTGTGATTTTA 57.805 29.630 0.00 0.00 35.70 1.52
3636 5702 5.401376 CAGTGCTCATCAGTTTCAATTTGTG 59.599 40.000 0.00 0.00 0.00 3.33
3637 5703 5.068198 ACAGTGCTCATCAGTTTCAATTTGT 59.932 36.000 0.00 0.00 0.00 2.83
3638 5704 5.526115 ACAGTGCTCATCAGTTTCAATTTG 58.474 37.500 0.00 0.00 0.00 2.32
3639 5705 5.779529 ACAGTGCTCATCAGTTTCAATTT 57.220 34.783 0.00 0.00 0.00 1.82
3640 5706 5.300034 TGAACAGTGCTCATCAGTTTCAATT 59.700 36.000 0.00 0.00 30.06 2.32
3641 5707 4.823442 TGAACAGTGCTCATCAGTTTCAAT 59.177 37.500 0.00 0.00 30.06 2.57
3642 5708 4.035558 GTGAACAGTGCTCATCAGTTTCAA 59.964 41.667 0.00 0.00 32.41 2.69
3644 5710 3.812053 AGTGAACAGTGCTCATCAGTTTC 59.188 43.478 0.00 0.00 0.00 2.78
3645 5711 3.813443 AGTGAACAGTGCTCATCAGTTT 58.187 40.909 0.00 0.00 0.00 2.66
3646 5712 3.482156 AGTGAACAGTGCTCATCAGTT 57.518 42.857 0.00 0.00 0.00 3.16
3647 5713 4.815533 ATAGTGAACAGTGCTCATCAGT 57.184 40.909 0.00 1.17 0.00 3.41
3648 5714 6.567959 TCTAATAGTGAACAGTGCTCATCAG 58.432 40.000 0.00 0.00 0.00 2.90
3649 5715 6.530019 TCTAATAGTGAACAGTGCTCATCA 57.470 37.500 0.00 0.00 0.00 3.07
3650 5716 7.834068 TTTCTAATAGTGAACAGTGCTCATC 57.166 36.000 0.00 0.00 0.00 2.92
3651 5717 7.201679 GCATTTCTAATAGTGAACAGTGCTCAT 60.202 37.037 0.00 0.00 0.00 2.90
3652 5718 6.092670 GCATTTCTAATAGTGAACAGTGCTCA 59.907 38.462 0.00 0.00 0.00 4.26
3653 5719 6.092670 TGCATTTCTAATAGTGAACAGTGCTC 59.907 38.462 0.00 0.00 32.60 4.26
3654 5720 5.939883 TGCATTTCTAATAGTGAACAGTGCT 59.060 36.000 0.00 0.00 32.60 4.40
3655 5721 6.182039 TGCATTTCTAATAGTGAACAGTGC 57.818 37.500 0.00 0.00 32.30 4.40
3656 5722 6.595326 TCCTGCATTTCTAATAGTGAACAGTG 59.405 38.462 0.00 0.00 0.00 3.66
3657 5723 6.711277 TCCTGCATTTCTAATAGTGAACAGT 58.289 36.000 0.00 0.00 0.00 3.55
3658 5724 7.615582 TTCCTGCATTTCTAATAGTGAACAG 57.384 36.000 0.00 0.00 0.00 3.16
3659 5725 8.579850 AATTCCTGCATTTCTAATAGTGAACA 57.420 30.769 0.00 0.00 0.00 3.18
3660 5726 9.860898 AAAATTCCTGCATTTCTAATAGTGAAC 57.139 29.630 0.00 0.00 0.00 3.18
3723 5801 5.375417 TTCTACATGTGTGCAATTTGGAG 57.625 39.130 9.11 0.00 0.00 3.86
3817 5896 9.811995 GAGGTGGTTACTTTGAAAAAGTAAAAT 57.188 29.630 20.95 9.79 42.36 1.82
3822 5901 5.265989 TGGAGGTGGTTACTTTGAAAAAGT 58.734 37.500 10.04 10.04 0.00 2.66
3833 5912 3.751698 GTGACTTTCATGGAGGTGGTTAC 59.248 47.826 0.00 0.00 0.00 2.50
3877 5956 3.945285 ACTTCCTTTTTGCGAGAAGACAA 59.055 39.130 5.80 0.00 38.38 3.18
3885 5964 6.976088 TCATTCATTTACTTCCTTTTTGCGA 58.024 32.000 0.00 0.00 0.00 5.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.