Multiple sequence alignment - TraesCS2B01G305300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G305300 chr2B 100.000 2378 0 0 1 2378 435353333 435350956 0.000000e+00 4392
1 TraesCS2B01G305300 chr2B 99.206 630 5 0 1 630 435372300 435371671 0.000000e+00 1136
2 TraesCS2B01G305300 chr2B 87.037 162 20 1 177 338 72769587 72769747 5.220000e-42 182
3 TraesCS2B01G305300 chr6B 97.482 2264 54 3 1 2263 617028554 617030815 0.000000e+00 3862
4 TraesCS2B01G305300 chr6B 93.966 116 7 0 2263 2378 333369814 333369699 2.430000e-40 176
5 TraesCS2B01G305300 chr6B 93.103 116 8 0 2263 2378 202360203 202360318 1.130000e-38 171
6 TraesCS2B01G305300 chr6B 93.103 116 8 0 2263 2378 260291566 260291451 1.130000e-38 171
7 TraesCS2B01G305300 chr6B 92.982 114 8 0 2263 2376 498219225 498219112 1.460000e-37 167
8 TraesCS2B01G305300 chr5A 97.259 2262 56 5 1 2261 692979192 692981448 0.000000e+00 3829
9 TraesCS2B01G305300 chr5A 96.755 2003 60 5 261 2261 693957649 693959648 0.000000e+00 3334
10 TraesCS2B01G305300 chr4A 97.215 2262 56 6 1 2261 602465167 602462912 0.000000e+00 3821
11 TraesCS2B01G305300 chr5B 96.600 2265 71 5 1 2261 576501418 576503680 0.000000e+00 3751
12 TraesCS2B01G305300 chr5B 93.103 116 8 0 2263 2378 362759909 362760024 1.130000e-38 171
13 TraesCS2B01G305300 chr5B 93.103 116 8 0 2263 2378 639521777 639521892 1.130000e-38 171
14 TraesCS2B01G305300 chr7B 97.305 2041 52 3 223 2262 709654254 709656292 0.000000e+00 3461
15 TraesCS2B01G305300 chr1B 97.235 2025 52 3 1 2023 17134731 17136753 0.000000e+00 3426
16 TraesCS2B01G305300 chr1B 96.410 1894 63 4 371 2263 41212305 41214194 0.000000e+00 3116
17 TraesCS2B01G305300 chr1B 96.148 1895 67 5 371 2263 41174293 41176183 0.000000e+00 3090
18 TraesCS2B01G305300 chr1B 93.966 116 7 0 2263 2378 491899254 491899139 2.430000e-40 176
19 TraesCS2B01G305300 chr2A 82.194 775 84 24 175 913 282882679 282883435 3.360000e-173 617
20 TraesCS2B01G305300 chr3B 93.103 116 8 0 2263 2378 307832330 307832445 1.130000e-38 171
21 TraesCS2B01G305300 chr1D 92.241 116 9 0 2263 2378 265442115 265442230 5.260000e-37 165


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G305300 chr2B 435350956 435353333 2377 True 4392 4392 100.000 1 2378 1 chr2B.!!$R1 2377
1 TraesCS2B01G305300 chr2B 435371671 435372300 629 True 1136 1136 99.206 1 630 1 chr2B.!!$R2 629
2 TraesCS2B01G305300 chr6B 617028554 617030815 2261 False 3862 3862 97.482 1 2263 1 chr6B.!!$F2 2262
3 TraesCS2B01G305300 chr5A 692979192 692981448 2256 False 3829 3829 97.259 1 2261 1 chr5A.!!$F1 2260
4 TraesCS2B01G305300 chr5A 693957649 693959648 1999 False 3334 3334 96.755 261 2261 1 chr5A.!!$F2 2000
5 TraesCS2B01G305300 chr4A 602462912 602465167 2255 True 3821 3821 97.215 1 2261 1 chr4A.!!$R1 2260
6 TraesCS2B01G305300 chr5B 576501418 576503680 2262 False 3751 3751 96.600 1 2261 1 chr5B.!!$F2 2260
7 TraesCS2B01G305300 chr7B 709654254 709656292 2038 False 3461 3461 97.305 223 2262 1 chr7B.!!$F1 2039
8 TraesCS2B01G305300 chr1B 17134731 17136753 2022 False 3426 3426 97.235 1 2023 1 chr1B.!!$F1 2022
9 TraesCS2B01G305300 chr1B 41212305 41214194 1889 False 3116 3116 96.410 371 2263 1 chr1B.!!$F3 1892
10 TraesCS2B01G305300 chr1B 41174293 41176183 1890 False 3090 3090 96.148 371 2263 1 chr1B.!!$F2 1892
11 TraesCS2B01G305300 chr2A 282882679 282883435 756 False 617 617 82.194 175 913 1 chr2A.!!$F1 738

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
391 421 4.70454 TCATTTTGGTACTGGAAATGCGAT 59.295 37.5 16.93 0.0 39.44 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1424 1463 0.17668 CTCATCAACCCCAGGTCGAG 59.823 60.0 0.0 0.0 33.12 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
391 421 4.704540 TCATTTTGGTACTGGAAATGCGAT 59.295 37.500 16.93 0.00 39.44 4.58
1162 1201 3.137446 AGTTCAACAGATCTGCAGCTT 57.863 42.857 22.83 6.55 0.00 3.74
1270 1309 4.224818 AGGTCAAGAAGAAATCAGAGGAGG 59.775 45.833 0.00 0.00 0.00 4.30
1363 1402 2.854777 CGTCTCATGGATCTGTTCGAAC 59.145 50.000 21.42 21.42 0.00 3.95
1383 1422 8.633075 TCGAACGTAAAATAGTTTAGTATGGG 57.367 34.615 0.00 0.00 29.74 4.00
1424 1463 4.338118 TGGGACTTTTGATGTTGAGTTGTC 59.662 41.667 0.00 0.00 0.00 3.18
1644 1683 6.551227 GGGCCTAAGTTAATGAAATCTTGGAT 59.449 38.462 0.84 0.00 0.00 3.41
1817 1860 5.382664 TTTTGTTGGTTAGAGAGAAGGGT 57.617 39.130 0.00 0.00 0.00 4.34
2034 2077 2.750814 TCAGCCACATCAGATCCTACA 58.249 47.619 0.00 0.00 0.00 2.74
2209 2253 6.973229 AAGGTCAATAAATGAAAGCAATGC 57.027 33.333 0.00 0.00 40.50 3.56
2263 2307 8.836268 AATTGACCGTATTTCTTGTAGTGTAA 57.164 30.769 0.00 0.00 0.00 2.41
2264 2308 7.642071 TTGACCGTATTTCTTGTAGTGTAAC 57.358 36.000 0.00 0.00 0.00 2.50
2265 2309 5.858049 TGACCGTATTTCTTGTAGTGTAACG 59.142 40.000 0.00 0.00 45.86 3.18
2266 2310 6.012658 ACCGTATTTCTTGTAGTGTAACGA 57.987 37.500 0.00 0.00 45.86 3.85
2267 2311 6.446318 ACCGTATTTCTTGTAGTGTAACGAA 58.554 36.000 0.00 0.00 45.86 3.85
2268 2312 6.922957 ACCGTATTTCTTGTAGTGTAACGAAA 59.077 34.615 0.00 0.00 45.86 3.46
2269 2313 7.096065 ACCGTATTTCTTGTAGTGTAACGAAAC 60.096 37.037 0.00 0.00 45.86 2.78
2270 2314 7.096106 CCGTATTTCTTGTAGTGTAACGAAACA 60.096 37.037 0.00 0.00 45.86 2.83
2271 2315 8.268052 CGTATTTCTTGTAGTGTAACGAAACAA 58.732 33.333 0.00 0.00 45.86 2.83
2276 2320 6.442487 TTGTAGTGTAACGAAACAAGATCG 57.558 37.500 0.00 0.00 45.86 3.69
2289 2333 7.391786 CGAAACAAGATCGTTTACTAATCTGG 58.608 38.462 0.00 0.00 39.17 3.86
2290 2334 7.274904 CGAAACAAGATCGTTTACTAATCTGGA 59.725 37.037 0.00 0.00 39.17 3.86
2291 2335 7.829378 AACAAGATCGTTTACTAATCTGGAC 57.171 36.000 0.00 0.00 30.35 4.02
2292 2336 7.171630 ACAAGATCGTTTACTAATCTGGACT 57.828 36.000 0.00 0.00 30.35 3.85
2293 2337 8.289939 ACAAGATCGTTTACTAATCTGGACTA 57.710 34.615 0.00 0.00 30.35 2.59
2294 2338 8.746530 ACAAGATCGTTTACTAATCTGGACTAA 58.253 33.333 0.00 0.00 30.35 2.24
2295 2339 9.582431 CAAGATCGTTTACTAATCTGGACTAAA 57.418 33.333 0.00 0.00 30.35 1.85
2296 2340 9.583765 AAGATCGTTTACTAATCTGGACTAAAC 57.416 33.333 0.00 0.00 30.35 2.01
2297 2341 8.968969 AGATCGTTTACTAATCTGGACTAAACT 58.031 33.333 0.00 0.00 0.00 2.66
2298 2342 9.235537 GATCGTTTACTAATCTGGACTAAACTC 57.764 37.037 0.00 0.00 0.00 3.01
2299 2343 8.114331 TCGTTTACTAATCTGGACTAAACTCA 57.886 34.615 0.00 0.00 0.00 3.41
2300 2344 8.579006 TCGTTTACTAATCTGGACTAAACTCAA 58.421 33.333 0.00 0.00 0.00 3.02
2301 2345 8.645487 CGTTTACTAATCTGGACTAAACTCAAC 58.355 37.037 0.00 0.00 0.00 3.18
2302 2346 9.708092 GTTTACTAATCTGGACTAAACTCAACT 57.292 33.333 0.00 0.00 0.00 3.16
2308 2352 8.974060 AATCTGGACTAAACTCAACTTTTACA 57.026 30.769 0.00 0.00 0.00 2.41
2309 2353 8.608844 ATCTGGACTAAACTCAACTTTTACAG 57.391 34.615 0.00 0.00 0.00 2.74
2310 2354 7.562135 TCTGGACTAAACTCAACTTTTACAGT 58.438 34.615 0.00 0.00 37.30 3.55
2311 2355 7.494625 TCTGGACTAAACTCAACTTTTACAGTG 59.505 37.037 0.00 0.00 35.12 3.66
2312 2356 6.037830 TGGACTAAACTCAACTTTTACAGTGC 59.962 38.462 0.00 0.00 35.12 4.40
2313 2357 6.373186 ACTAAACTCAACTTTTACAGTGCC 57.627 37.500 0.00 0.00 35.12 5.01
2314 2358 5.883673 ACTAAACTCAACTTTTACAGTGCCA 59.116 36.000 0.00 0.00 35.12 4.92
2315 2359 5.652994 AAACTCAACTTTTACAGTGCCAA 57.347 34.783 0.00 0.00 35.12 4.52
2316 2360 5.652994 AACTCAACTTTTACAGTGCCAAA 57.347 34.783 0.00 0.00 35.12 3.28
2317 2361 5.652994 ACTCAACTTTTACAGTGCCAAAA 57.347 34.783 0.00 0.00 35.12 2.44
2318 2362 6.220726 ACTCAACTTTTACAGTGCCAAAAT 57.779 33.333 4.27 0.00 35.12 1.82
2319 2363 6.273071 ACTCAACTTTTACAGTGCCAAAATC 58.727 36.000 4.27 0.00 35.12 2.17
2320 2364 6.127479 ACTCAACTTTTACAGTGCCAAAATCA 60.127 34.615 4.27 0.00 35.12 2.57
2321 2365 6.815089 TCAACTTTTACAGTGCCAAAATCAT 58.185 32.000 4.27 0.00 35.12 2.45
2322 2366 6.700960 TCAACTTTTACAGTGCCAAAATCATG 59.299 34.615 4.27 0.00 35.12 3.07
2323 2367 6.160576 ACTTTTACAGTGCCAAAATCATGT 57.839 33.333 4.27 0.00 32.83 3.21
2324 2368 6.581712 ACTTTTACAGTGCCAAAATCATGTT 58.418 32.000 4.27 0.00 32.83 2.71
2325 2369 6.701400 ACTTTTACAGTGCCAAAATCATGTTC 59.299 34.615 4.27 0.00 32.83 3.18
2326 2370 5.781210 TTACAGTGCCAAAATCATGTTCA 57.219 34.783 0.00 0.00 0.00 3.18
2327 2371 4.669206 ACAGTGCCAAAATCATGTTCAA 57.331 36.364 0.00 0.00 0.00 2.69
2328 2372 5.021033 ACAGTGCCAAAATCATGTTCAAA 57.979 34.783 0.00 0.00 0.00 2.69
2329 2373 5.613329 ACAGTGCCAAAATCATGTTCAAAT 58.387 33.333 0.00 0.00 0.00 2.32
2330 2374 6.056884 ACAGTGCCAAAATCATGTTCAAATT 58.943 32.000 0.00 0.00 0.00 1.82
2331 2375 6.017770 ACAGTGCCAAAATCATGTTCAAATTG 60.018 34.615 0.00 0.00 0.00 2.32
2332 2376 5.470777 AGTGCCAAAATCATGTTCAAATTGG 59.529 36.000 0.00 0.00 39.02 3.16
2333 2377 5.239087 GTGCCAAAATCATGTTCAAATTGGT 59.761 36.000 0.00 0.00 38.43 3.67
2334 2378 5.826737 TGCCAAAATCATGTTCAAATTGGTT 59.173 32.000 0.00 0.00 38.43 3.67
2335 2379 6.994496 TGCCAAAATCATGTTCAAATTGGTTA 59.006 30.769 0.00 0.00 38.43 2.85
2336 2380 7.500227 TGCCAAAATCATGTTCAAATTGGTTAA 59.500 29.630 0.00 0.00 38.43 2.01
2337 2381 8.016801 GCCAAAATCATGTTCAAATTGGTTAAG 58.983 33.333 0.00 0.00 38.43 1.85
2338 2382 9.054922 CCAAAATCATGTTCAAATTGGTTAAGT 57.945 29.630 0.00 0.00 33.00 2.24
2341 2385 9.829507 AAATCATGTTCAAATTGGTTAAGTTGA 57.170 25.926 0.00 0.00 45.76 3.18
2369 2413 9.646427 AGAATAGAATGATACGAAGATTTAGGC 57.354 33.333 0.00 0.00 0.00 3.93
2370 2414 8.467402 AATAGAATGATACGAAGATTTAGGCG 57.533 34.615 0.00 0.00 0.00 5.52
2371 2415 6.085555 AGAATGATACGAAGATTTAGGCGA 57.914 37.500 0.00 0.00 0.00 5.54
2372 2416 6.692486 AGAATGATACGAAGATTTAGGCGAT 58.308 36.000 0.00 0.00 0.00 4.58
2373 2417 6.587990 AGAATGATACGAAGATTTAGGCGATG 59.412 38.462 0.00 0.00 0.00 3.84
2374 2418 4.556233 TGATACGAAGATTTAGGCGATGG 58.444 43.478 0.00 0.00 0.00 3.51
2375 2419 2.981859 ACGAAGATTTAGGCGATGGT 57.018 45.000 0.00 0.00 0.00 3.55
2376 2420 3.261981 ACGAAGATTTAGGCGATGGTT 57.738 42.857 0.00 0.00 0.00 3.67
2377 2421 3.606687 ACGAAGATTTAGGCGATGGTTT 58.393 40.909 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 58 5.747565 TCTGAAATTGTTCACGACACAATC 58.252 37.500 10.56 3.70 42.80 2.67
744 777 6.431852 GCACCAGGTTTATTAAACAGGTAAGA 59.568 38.462 23.76 0.00 44.36 2.10
915 954 9.445878 ACTAGGAAACTTTATAAGCAAACTACC 57.554 33.333 0.00 0.00 43.67 3.18
1162 1201 5.164620 TCTTGTACATGAGCATCCAAAGA 57.835 39.130 7.33 0.00 0.00 2.52
1227 1266 0.725686 CAACAAGCTCCTCTCGCATG 59.274 55.000 0.00 0.00 32.80 4.06
1363 1402 7.049754 ACCACCCCATACTAAACTATTTTACG 58.950 38.462 0.00 0.00 0.00 3.18
1383 1422 1.270252 CCAAAGCCAACATCAACCACC 60.270 52.381 0.00 0.00 0.00 4.61
1424 1463 0.176680 CTCATCAACCCCAGGTCGAG 59.823 60.000 0.00 0.00 33.12 4.04
1644 1683 6.266558 AGTTTGGCAGTCAACCAATACAATTA 59.733 34.615 0.00 0.00 46.25 1.40
1685 1725 3.756434 GCCAATAACCAACAGTAGCTCAA 59.244 43.478 0.00 0.00 0.00 3.02
1794 1837 5.953571 ACCCTTCTCTCTAACCAACAAAAT 58.046 37.500 0.00 0.00 0.00 1.82
1817 1860 7.911130 TTCAATCTATCATTAATTGGGCCAA 57.089 32.000 23.33 23.33 32.49 4.52
1999 2042 3.783362 CTGAACCAACGTGGCCCCA 62.783 63.158 0.00 0.00 42.67 4.96
2000 2043 2.983592 CTGAACCAACGTGGCCCC 60.984 66.667 0.00 0.00 42.67 5.80
2002 2045 3.670377 GGCTGAACCAACGTGGCC 61.670 66.667 0.00 0.00 42.67 5.36
2034 2077 4.846367 TCATTACTAATGAGCCTAGGCCAT 59.154 41.667 30.42 26.70 42.69 4.40
2209 2253 3.428316 CCCCATTTTGGTCGTTAATTCGG 60.428 47.826 0.00 0.00 35.17 4.30
2264 2308 7.274904 TCCAGATTAGTAAACGATCTTGTTTCG 59.725 37.037 2.47 0.00 40.99 3.46
2265 2309 8.381387 GTCCAGATTAGTAAACGATCTTGTTTC 58.619 37.037 2.47 0.00 40.99 2.78
2266 2310 8.095169 AGTCCAGATTAGTAAACGATCTTGTTT 58.905 33.333 4.47 4.47 43.95 2.83
2267 2311 7.612677 AGTCCAGATTAGTAAACGATCTTGTT 58.387 34.615 0.00 0.00 0.00 2.83
2268 2312 7.171630 AGTCCAGATTAGTAAACGATCTTGT 57.828 36.000 0.00 0.00 0.00 3.16
2269 2313 9.582431 TTTAGTCCAGATTAGTAAACGATCTTG 57.418 33.333 0.00 0.00 0.00 3.02
2270 2314 9.583765 GTTTAGTCCAGATTAGTAAACGATCTT 57.416 33.333 0.00 0.00 34.68 2.40
2271 2315 8.968969 AGTTTAGTCCAGATTAGTAAACGATCT 58.031 33.333 0.00 0.00 43.11 2.75
2272 2316 9.235537 GAGTTTAGTCCAGATTAGTAAACGATC 57.764 37.037 0.00 0.00 43.11 3.69
2273 2317 8.746530 TGAGTTTAGTCCAGATTAGTAAACGAT 58.253 33.333 0.00 0.00 43.11 3.73
2274 2318 8.114331 TGAGTTTAGTCCAGATTAGTAAACGA 57.886 34.615 0.00 0.00 43.11 3.85
2275 2319 8.645487 GTTGAGTTTAGTCCAGATTAGTAAACG 58.355 37.037 0.00 0.00 43.11 3.60
2276 2320 9.708092 AGTTGAGTTTAGTCCAGATTAGTAAAC 57.292 33.333 0.00 0.00 40.60 2.01
2283 2327 8.974060 TGTAAAAGTTGAGTTTAGTCCAGATT 57.026 30.769 0.00 0.00 0.00 2.40
2284 2328 8.211629 ACTGTAAAAGTTGAGTTTAGTCCAGAT 58.788 33.333 0.00 0.00 34.57 2.90
2285 2329 7.494625 CACTGTAAAAGTTGAGTTTAGTCCAGA 59.505 37.037 0.00 0.00 36.83 3.86
2286 2330 7.630924 CACTGTAAAAGTTGAGTTTAGTCCAG 58.369 38.462 0.00 0.00 36.83 3.86
2287 2331 6.037830 GCACTGTAAAAGTTGAGTTTAGTCCA 59.962 38.462 0.00 0.00 36.83 4.02
2288 2332 6.427974 GCACTGTAAAAGTTGAGTTTAGTCC 58.572 40.000 0.00 0.00 36.83 3.85
2289 2333 6.037830 TGGCACTGTAAAAGTTGAGTTTAGTC 59.962 38.462 0.00 0.00 36.83 2.59
2290 2334 5.883673 TGGCACTGTAAAAGTTGAGTTTAGT 59.116 36.000 0.00 0.00 36.83 2.24
2291 2335 6.371809 TGGCACTGTAAAAGTTGAGTTTAG 57.628 37.500 0.00 0.00 36.83 1.85
2292 2336 6.761099 TTGGCACTGTAAAAGTTGAGTTTA 57.239 33.333 0.00 0.00 36.83 2.01
2293 2337 5.652994 TTGGCACTGTAAAAGTTGAGTTT 57.347 34.783 0.00 0.00 36.83 2.66
2294 2338 5.652994 TTTGGCACTGTAAAAGTTGAGTT 57.347 34.783 0.00 0.00 36.83 3.01
2295 2339 5.652994 TTTTGGCACTGTAAAAGTTGAGT 57.347 34.783 0.00 0.00 36.83 3.41
2296 2340 6.272318 TGATTTTGGCACTGTAAAAGTTGAG 58.728 36.000 0.00 0.00 36.83 3.02
2297 2341 6.214191 TGATTTTGGCACTGTAAAAGTTGA 57.786 33.333 0.00 0.00 36.83 3.18
2298 2342 6.479660 ACATGATTTTGGCACTGTAAAAGTTG 59.520 34.615 0.00 0.00 36.83 3.16
2299 2343 6.581712 ACATGATTTTGGCACTGTAAAAGTT 58.418 32.000 0.00 0.00 36.83 2.66
2300 2344 6.160576 ACATGATTTTGGCACTGTAAAAGT 57.839 33.333 0.00 0.00 40.93 2.66
2301 2345 6.700960 TGAACATGATTTTGGCACTGTAAAAG 59.299 34.615 0.00 0.00 0.00 2.27
2302 2346 6.577103 TGAACATGATTTTGGCACTGTAAAA 58.423 32.000 0.00 0.00 0.00 1.52
2303 2347 6.154203 TGAACATGATTTTGGCACTGTAAA 57.846 33.333 0.00 0.00 0.00 2.01
2304 2348 5.781210 TGAACATGATTTTGGCACTGTAA 57.219 34.783 0.00 0.00 0.00 2.41
2305 2349 5.781210 TTGAACATGATTTTGGCACTGTA 57.219 34.783 0.00 0.00 0.00 2.74
2306 2350 4.669206 TTGAACATGATTTTGGCACTGT 57.331 36.364 0.00 0.00 0.00 3.55
2307 2351 6.367421 CAATTTGAACATGATTTTGGCACTG 58.633 36.000 0.00 0.00 0.00 3.66
2308 2352 5.470777 CCAATTTGAACATGATTTTGGCACT 59.529 36.000 0.00 0.00 0.00 4.40
2309 2353 5.239087 ACCAATTTGAACATGATTTTGGCAC 59.761 36.000 0.00 0.00 36.46 5.01
2310 2354 5.374921 ACCAATTTGAACATGATTTTGGCA 58.625 33.333 0.00 0.00 36.46 4.92
2311 2355 5.945466 ACCAATTTGAACATGATTTTGGC 57.055 34.783 0.00 0.00 36.46 4.52
2312 2356 9.054922 ACTTAACCAATTTGAACATGATTTTGG 57.945 29.630 0.00 6.41 38.43 3.28
2315 2359 9.829507 TCAACTTAACCAATTTGAACATGATTT 57.170 25.926 0.00 0.00 32.28 2.17
2316 2360 9.829507 TTCAACTTAACCAATTTGAACATGATT 57.170 25.926 0.00 0.00 37.99 2.57
2317 2361 9.829507 TTTCAACTTAACCAATTTGAACATGAT 57.170 25.926 0.00 0.00 40.77 2.45
2318 2362 9.311916 CTTTCAACTTAACCAATTTGAACATGA 57.688 29.630 0.00 0.00 40.77 3.07
2319 2363 9.311916 TCTTTCAACTTAACCAATTTGAACATG 57.688 29.630 0.00 0.00 40.77 3.21
2320 2364 9.883142 TTCTTTCAACTTAACCAATTTGAACAT 57.117 25.926 0.00 0.00 40.77 2.71
2321 2365 9.883142 ATTCTTTCAACTTAACCAATTTGAACA 57.117 25.926 0.00 0.00 40.77 3.18
2343 2387 9.646427 GCCTAAATCTTCGTATCATTCTATTCT 57.354 33.333 0.00 0.00 0.00 2.40
2344 2388 8.587950 CGCCTAAATCTTCGTATCATTCTATTC 58.412 37.037 0.00 0.00 0.00 1.75
2345 2389 8.304596 TCGCCTAAATCTTCGTATCATTCTATT 58.695 33.333 0.00 0.00 0.00 1.73
2346 2390 7.827701 TCGCCTAAATCTTCGTATCATTCTAT 58.172 34.615 0.00 0.00 0.00 1.98
2347 2391 7.210718 TCGCCTAAATCTTCGTATCATTCTA 57.789 36.000 0.00 0.00 0.00 2.10
2348 2392 6.085555 TCGCCTAAATCTTCGTATCATTCT 57.914 37.500 0.00 0.00 0.00 2.40
2349 2393 6.183360 CCATCGCCTAAATCTTCGTATCATTC 60.183 42.308 0.00 0.00 0.00 2.67
2350 2394 5.639506 CCATCGCCTAAATCTTCGTATCATT 59.360 40.000 0.00 0.00 0.00 2.57
2351 2395 5.171476 CCATCGCCTAAATCTTCGTATCAT 58.829 41.667 0.00 0.00 0.00 2.45
2352 2396 4.038763 ACCATCGCCTAAATCTTCGTATCA 59.961 41.667 0.00 0.00 0.00 2.15
2353 2397 4.557205 ACCATCGCCTAAATCTTCGTATC 58.443 43.478 0.00 0.00 0.00 2.24
2354 2398 4.602340 ACCATCGCCTAAATCTTCGTAT 57.398 40.909 0.00 0.00 0.00 3.06
2355 2399 4.395959 AACCATCGCCTAAATCTTCGTA 57.604 40.909 0.00 0.00 0.00 3.43
2356 2400 2.981859 ACCATCGCCTAAATCTTCGT 57.018 45.000 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.