Multiple sequence alignment - TraesCS2B01G305100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G305100 chr2B 100.000 4155 0 0 1 4155 435154123 435158277 0.000000e+00 7673.0
1 TraesCS2B01G305100 chr2B 98.846 260 3 0 524 783 635083330 635083589 8.140000e-127 464.0
2 TraesCS2B01G305100 chr2B 98.113 265 5 0 519 783 481659855 481660119 2.930000e-126 462.0
3 TraesCS2B01G305100 chr2B 96.875 32 1 0 2168 2199 16045797 16045766 2.000000e-03 54.7
4 TraesCS2B01G305100 chr2D 97.849 2603 45 9 824 3418 366496787 366499386 0.000000e+00 4486.0
5 TraesCS2B01G305100 chr2D 97.706 741 13 1 3415 4155 366499466 366500202 0.000000e+00 1271.0
6 TraesCS2B01G305100 chr2D 95.866 387 11 3 142 527 366496387 366496769 4.560000e-174 621.0
7 TraesCS2B01G305100 chr2A 97.042 1927 44 2 2229 4155 495957936 495959849 0.000000e+00 3230.0
8 TraesCS2B01G305100 chr2A 96.703 1456 30 6 788 2231 495956375 495957824 0.000000e+00 2407.0
9 TraesCS2B01G305100 chr2A 94.915 531 19 6 2 527 495955851 495956378 0.000000e+00 824.0
10 TraesCS2B01G305100 chr2A 98.851 261 3 0 523 783 692745606 692745866 2.260000e-127 466.0
11 TraesCS2B01G305100 chr5B 81.335 884 152 10 2274 3154 481142398 481143271 0.000000e+00 706.0
12 TraesCS2B01G305100 chr5D 81.206 862 143 16 2300 3154 402203071 402203920 0.000000e+00 676.0
13 TraesCS2B01G305100 chr5A 80.980 857 150 10 2300 3154 507967115 507967960 0.000000e+00 667.0
14 TraesCS2B01G305100 chr5A 98.846 260 3 0 524 783 693141129 693141388 8.140000e-127 464.0
15 TraesCS2B01G305100 chr6B 98.491 265 3 1 519 783 279088097 279087834 2.260000e-127 466.0
16 TraesCS2B01G305100 chr7A 98.846 260 3 0 524 783 529331795 529331536 8.140000e-127 464.0
17 TraesCS2B01G305100 chr6A 98.846 260 3 0 524 783 133802836 133803095 8.140000e-127 464.0
18 TraesCS2B01G305100 chr3A 97.080 274 6 2 512 783 502279597 502279870 1.050000e-125 460.0
19 TraesCS2B01G305100 chr3A 75.626 878 185 22 2301 3155 683252595 683251724 3.870000e-110 409.0
20 TraesCS2B01G305100 chr1A 98.467 261 4 0 523 783 483647509 483647249 1.050000e-125 460.0
21 TraesCS2B01G305100 chr3B 100.000 30 0 0 2167 2196 637059476 637059447 5.800000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G305100 chr2B 435154123 435158277 4154 False 7673.000000 7673 100.000000 1 4155 1 chr2B.!!$F1 4154
1 TraesCS2B01G305100 chr2D 366496387 366500202 3815 False 2126.000000 4486 97.140333 142 4155 3 chr2D.!!$F1 4013
2 TraesCS2B01G305100 chr2A 495955851 495959849 3998 False 2153.666667 3230 96.220000 2 4155 3 chr2A.!!$F2 4153
3 TraesCS2B01G305100 chr5B 481142398 481143271 873 False 706.000000 706 81.335000 2274 3154 1 chr5B.!!$F1 880
4 TraesCS2B01G305100 chr5D 402203071 402203920 849 False 676.000000 676 81.206000 2300 3154 1 chr5D.!!$F1 854
5 TraesCS2B01G305100 chr5A 507967115 507967960 845 False 667.000000 667 80.980000 2300 3154 1 chr5A.!!$F1 854
6 TraesCS2B01G305100 chr3A 683251724 683252595 871 True 409.000000 409 75.626000 2301 3155 1 chr3A.!!$R1 854

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
27 28 0.447801 CAACAATGCACTAGACGGGC 59.552 55.000 0.0 0.0 0.00 6.13 F
544 549 0.639943 TAGGCTGGTCATAGTGGGGA 59.360 55.000 0.0 0.0 0.00 4.81 F
545 550 0.692419 AGGCTGGTCATAGTGGGGAG 60.692 60.000 0.0 0.0 0.00 4.30 F
1256 1261 0.946221 CTCCACCTGTTGACACGCTC 60.946 60.000 0.0 0.0 0.00 5.03 F
2117 2136 1.285078 AGGGTTTCCTTATGCCTGACC 59.715 52.381 0.0 0.0 41.56 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1237 1242 0.946221 GAGCGTGTCAACAGGTGGAG 60.946 60.000 4.92 0.0 34.50 3.86 R
1846 1865 1.774254 TCAGCCTCTTTGGGTTTGAGA 59.226 47.619 0.00 0.0 45.67 3.27 R
2296 2429 4.686091 GCTTTTTCTTCCTGCAAATACCAC 59.314 41.667 0.00 0.0 0.00 4.16 R
2622 2794 2.548067 CCTCTGTACAACACCACCACTC 60.548 54.545 0.00 0.0 0.00 3.51 R
3928 4187 0.242825 GCTGCACTCAGTGGTACGTA 59.757 55.000 7.00 0.0 42.29 3.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 0.447801 CAACAATGCACTAGACGGGC 59.552 55.000 0.00 0.00 0.00 6.13
29 30 2.173669 CAATGCACTAGACGGGCCG 61.174 63.158 27.06 27.06 0.00 6.13
48 50 1.303309 GGCTGGATGCACTACATGTC 58.697 55.000 0.00 0.00 45.15 3.06
56 58 1.474879 TGCACTACATGTCGGATCGAA 59.525 47.619 0.00 0.00 37.72 3.71
114 116 2.125673 AACGTCGCCCTGGATTCG 60.126 61.111 0.00 0.00 0.00 3.34
346 350 4.709397 CCCTCTCCTTATATGGCACTAGAG 59.291 50.000 0.00 11.43 0.00 2.43
401 406 6.089417 GTGAAGCCAGCATTAATAACAACAAC 59.911 38.462 0.00 0.00 0.00 3.32
421 426 3.947626 ACGATTTTCAACCAAACAGACG 58.052 40.909 0.00 0.00 0.00 4.18
485 490 4.735020 ACCCCTAATTAAGCCCCATCTTTA 59.265 41.667 0.00 0.00 0.00 1.85
486 491 5.077564 CCCCTAATTAAGCCCCATCTTTAC 58.922 45.833 0.00 0.00 0.00 2.01
487 492 5.162980 CCCCTAATTAAGCCCCATCTTTACT 60.163 44.000 0.00 0.00 0.00 2.24
489 494 6.490381 CCCTAATTAAGCCCCATCTTTACTTC 59.510 42.308 0.00 0.00 0.00 3.01
490 495 7.060421 CCTAATTAAGCCCCATCTTTACTTCA 58.940 38.462 0.00 0.00 0.00 3.02
491 496 7.725844 CCTAATTAAGCCCCATCTTTACTTCAT 59.274 37.037 0.00 0.00 0.00 2.57
492 497 9.793259 CTAATTAAGCCCCATCTTTACTTCATA 57.207 33.333 0.00 0.00 0.00 2.15
493 498 8.465273 AATTAAGCCCCATCTTTACTTCATAC 57.535 34.615 0.00 0.00 0.00 2.39
527 532 4.514066 AGGAAAGTGGTTTTGTACGCTTAG 59.486 41.667 0.00 0.00 0.00 2.18
528 533 4.319984 GGAAAGTGGTTTTGTACGCTTAGG 60.320 45.833 0.00 0.00 0.00 2.69
529 534 2.148768 AGTGGTTTTGTACGCTTAGGC 58.851 47.619 0.00 0.00 0.00 3.93
530 535 2.148768 GTGGTTTTGTACGCTTAGGCT 58.851 47.619 0.00 0.00 36.09 4.58
531 536 2.095919 GTGGTTTTGTACGCTTAGGCTG 60.096 50.000 0.00 0.00 36.09 4.85
533 538 2.148768 GTTTTGTACGCTTAGGCTGGT 58.851 47.619 0.00 0.00 36.09 4.00
534 539 2.088950 TTTGTACGCTTAGGCTGGTC 57.911 50.000 0.00 0.00 36.09 4.02
535 540 0.970640 TTGTACGCTTAGGCTGGTCA 59.029 50.000 0.00 0.00 36.09 4.02
536 541 1.191535 TGTACGCTTAGGCTGGTCAT 58.808 50.000 0.00 0.00 36.09 3.06
537 542 2.380941 TGTACGCTTAGGCTGGTCATA 58.619 47.619 0.00 0.00 36.09 2.15
538 543 2.361119 TGTACGCTTAGGCTGGTCATAG 59.639 50.000 0.00 0.00 36.09 2.23
539 544 1.486211 ACGCTTAGGCTGGTCATAGT 58.514 50.000 0.00 0.00 36.09 2.12
540 545 1.137086 ACGCTTAGGCTGGTCATAGTG 59.863 52.381 0.00 0.00 36.09 2.74
541 546 1.539065 CGCTTAGGCTGGTCATAGTGG 60.539 57.143 0.00 0.00 36.09 4.00
542 547 1.202698 GCTTAGGCTGGTCATAGTGGG 60.203 57.143 0.00 0.00 35.22 4.61
543 548 1.417890 CTTAGGCTGGTCATAGTGGGG 59.582 57.143 0.00 0.00 0.00 4.96
544 549 0.639943 TAGGCTGGTCATAGTGGGGA 59.360 55.000 0.00 0.00 0.00 4.81
545 550 0.692419 AGGCTGGTCATAGTGGGGAG 60.692 60.000 0.00 0.00 0.00 4.30
546 551 0.983378 GGCTGGTCATAGTGGGGAGT 60.983 60.000 0.00 0.00 0.00 3.85
547 552 1.691482 GGCTGGTCATAGTGGGGAGTA 60.691 57.143 0.00 0.00 0.00 2.59
548 553 2.116238 GCTGGTCATAGTGGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
549 554 2.158943 GCTGGTCATAGTGGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
550 555 3.375699 CTGGTCATAGTGGGGAGTAACT 58.624 50.000 0.00 0.00 0.00 2.24
551 556 3.775316 CTGGTCATAGTGGGGAGTAACTT 59.225 47.826 0.00 0.00 0.00 2.66
552 557 4.950361 TGGTCATAGTGGGGAGTAACTTA 58.050 43.478 0.00 0.00 0.00 2.24
553 558 4.960469 TGGTCATAGTGGGGAGTAACTTAG 59.040 45.833 0.00 0.00 0.00 2.18
554 559 5.206587 GGTCATAGTGGGGAGTAACTTAGA 58.793 45.833 0.00 0.00 0.00 2.10
555 560 5.068855 GGTCATAGTGGGGAGTAACTTAGAC 59.931 48.000 0.00 0.00 32.58 2.59
556 561 5.892686 GTCATAGTGGGGAGTAACTTAGACT 59.107 44.000 0.00 0.00 31.58 3.24
557 562 7.059156 GTCATAGTGGGGAGTAACTTAGACTA 58.941 42.308 0.00 0.00 31.58 2.59
558 563 7.229106 GTCATAGTGGGGAGTAACTTAGACTAG 59.771 44.444 0.00 0.00 31.58 2.57
559 564 5.533333 AGTGGGGAGTAACTTAGACTAGT 57.467 43.478 0.00 0.00 0.00 2.57
560 565 6.649041 AGTGGGGAGTAACTTAGACTAGTA 57.351 41.667 0.00 0.00 0.00 1.82
561 566 7.037342 AGTGGGGAGTAACTTAGACTAGTAA 57.963 40.000 0.00 0.00 0.00 2.24
562 567 6.889177 AGTGGGGAGTAACTTAGACTAGTAAC 59.111 42.308 0.00 0.00 0.00 2.50
563 568 6.660949 GTGGGGAGTAACTTAGACTAGTAACA 59.339 42.308 0.00 0.00 0.00 2.41
564 569 7.341512 GTGGGGAGTAACTTAGACTAGTAACAT 59.658 40.741 0.00 0.00 0.00 2.71
565 570 8.560039 TGGGGAGTAACTTAGACTAGTAACATA 58.440 37.037 0.00 0.00 0.00 2.29
566 571 8.845227 GGGGAGTAACTTAGACTAGTAACATAC 58.155 40.741 0.00 0.00 0.00 2.39
567 572 9.401058 GGGAGTAACTTAGACTAGTAACATACA 57.599 37.037 0.00 0.00 0.00 2.29
603 608 7.834881 TCTATGTTACTACCTTCATAGTGGG 57.165 40.000 0.00 0.00 40.01 4.61
604 609 7.359849 TCTATGTTACTACCTTCATAGTGGGT 58.640 38.462 0.00 0.00 40.01 4.51
605 610 8.505246 TCTATGTTACTACCTTCATAGTGGGTA 58.495 37.037 0.00 0.00 40.01 3.69
610 615 5.517322 CTACCTTCATAGTGGGTAGTGTC 57.483 47.826 9.46 0.00 44.30 3.67
611 616 3.786553 ACCTTCATAGTGGGTAGTGTCA 58.213 45.455 0.00 0.00 0.00 3.58
612 617 4.362677 ACCTTCATAGTGGGTAGTGTCAT 58.637 43.478 0.00 0.00 0.00 3.06
613 618 5.525484 ACCTTCATAGTGGGTAGTGTCATA 58.475 41.667 0.00 0.00 0.00 2.15
614 619 5.598830 ACCTTCATAGTGGGTAGTGTCATAG 59.401 44.000 0.00 0.00 0.00 2.23
615 620 5.011125 CCTTCATAGTGGGTAGTGTCATAGG 59.989 48.000 0.00 0.00 0.00 2.57
616 621 5.138758 TCATAGTGGGTAGTGTCATAGGT 57.861 43.478 0.00 0.00 0.00 3.08
617 622 4.893524 TCATAGTGGGTAGTGTCATAGGTG 59.106 45.833 0.00 0.00 0.00 4.00
618 623 3.185880 AGTGGGTAGTGTCATAGGTGT 57.814 47.619 0.00 0.00 0.00 4.16
619 624 2.832129 AGTGGGTAGTGTCATAGGTGTG 59.168 50.000 0.00 0.00 0.00 3.82
620 625 2.093658 GTGGGTAGTGTCATAGGTGTGG 60.094 54.545 0.00 0.00 0.00 4.17
621 626 2.185387 GGGTAGTGTCATAGGTGTGGT 58.815 52.381 0.00 0.00 0.00 4.16
622 627 3.245694 TGGGTAGTGTCATAGGTGTGGTA 60.246 47.826 0.00 0.00 0.00 3.25
623 628 3.770933 GGGTAGTGTCATAGGTGTGGTAA 59.229 47.826 0.00 0.00 0.00 2.85
624 629 4.382362 GGGTAGTGTCATAGGTGTGGTAAC 60.382 50.000 0.00 0.00 0.00 2.50
643 648 8.588290 TGGTAACATAGTTGCCTTCATTTATT 57.412 30.769 16.08 0.00 46.17 1.40
644 649 9.688091 TGGTAACATAGTTGCCTTCATTTATTA 57.312 29.630 16.08 0.00 46.17 0.98
645 650 9.946165 GGTAACATAGTTGCCTTCATTTATTAC 57.054 33.333 9.36 0.00 0.00 1.89
653 658 9.515226 AGTTGCCTTCATTTATTACTTTGTAGA 57.485 29.630 0.00 0.00 0.00 2.59
654 659 9.556030 GTTGCCTTCATTTATTACTTTGTAGAC 57.444 33.333 0.00 0.00 0.00 2.59
655 660 9.515226 TTGCCTTCATTTATTACTTTGTAGACT 57.485 29.630 0.00 0.00 0.00 3.24
656 661 9.162764 TGCCTTCATTTATTACTTTGTAGACTC 57.837 33.333 0.00 0.00 0.00 3.36
657 662 9.162764 GCCTTCATTTATTACTTTGTAGACTCA 57.837 33.333 0.00 0.00 0.00 3.41
668 673 7.325660 ACTTTGTAGACTCATTATGCATTGG 57.674 36.000 3.54 0.00 0.00 3.16
669 674 7.112122 ACTTTGTAGACTCATTATGCATTGGA 58.888 34.615 3.54 0.00 0.00 3.53
670 675 7.611467 ACTTTGTAGACTCATTATGCATTGGAA 59.389 33.333 3.54 0.00 0.00 3.53
671 676 7.936496 TTGTAGACTCATTATGCATTGGAAA 57.064 32.000 3.54 0.00 0.00 3.13
672 677 7.320443 TGTAGACTCATTATGCATTGGAAAC 57.680 36.000 3.54 0.00 0.00 2.78
673 678 5.841957 AGACTCATTATGCATTGGAAACC 57.158 39.130 3.54 0.00 0.00 3.27
674 679 4.336433 AGACTCATTATGCATTGGAAACCG 59.664 41.667 3.54 0.00 0.00 4.44
675 680 3.181487 ACTCATTATGCATTGGAAACCGC 60.181 43.478 3.54 0.00 0.00 5.68
676 681 3.023119 TCATTATGCATTGGAAACCGCT 58.977 40.909 3.54 0.00 0.00 5.52
677 682 4.203226 TCATTATGCATTGGAAACCGCTA 58.797 39.130 3.54 0.00 0.00 4.26
678 683 4.826733 TCATTATGCATTGGAAACCGCTAT 59.173 37.500 3.54 0.00 0.00 2.97
679 684 4.566545 TTATGCATTGGAAACCGCTATG 57.433 40.909 3.54 0.00 0.00 2.23
680 685 1.832883 TGCATTGGAAACCGCTATGT 58.167 45.000 0.00 0.00 0.00 2.29
681 686 1.472082 TGCATTGGAAACCGCTATGTG 59.528 47.619 0.00 0.00 0.00 3.21
682 687 1.742831 GCATTGGAAACCGCTATGTGA 59.257 47.619 0.00 0.00 0.00 3.58
683 688 2.358898 GCATTGGAAACCGCTATGTGAT 59.641 45.455 0.00 0.00 0.00 3.06
684 689 3.793129 GCATTGGAAACCGCTATGTGATG 60.793 47.826 0.00 0.00 0.00 3.07
685 690 2.036958 TGGAAACCGCTATGTGATGG 57.963 50.000 0.00 0.00 0.00 3.51
686 691 1.280710 TGGAAACCGCTATGTGATGGT 59.719 47.619 0.00 0.00 35.90 3.55
687 692 2.502130 TGGAAACCGCTATGTGATGGTA 59.498 45.455 0.00 0.00 33.45 3.25
688 693 3.055021 TGGAAACCGCTATGTGATGGTAA 60.055 43.478 0.00 0.00 33.45 2.85
689 694 3.311596 GGAAACCGCTATGTGATGGTAAC 59.688 47.826 0.00 0.00 33.45 2.50
713 718 8.863872 ACATATTATGTTACCCTATTTGCCTC 57.136 34.615 3.40 0.00 41.63 4.70
714 719 8.669571 ACATATTATGTTACCCTATTTGCCTCT 58.330 33.333 3.40 0.00 41.63 3.69
715 720 9.167311 CATATTATGTTACCCTATTTGCCTCTC 57.833 37.037 0.00 0.00 0.00 3.20
716 721 6.824958 TTATGTTACCCTATTTGCCTCTCT 57.175 37.500 0.00 0.00 0.00 3.10
717 722 4.755266 TGTTACCCTATTTGCCTCTCTC 57.245 45.455 0.00 0.00 0.00 3.20
718 723 4.362677 TGTTACCCTATTTGCCTCTCTCT 58.637 43.478 0.00 0.00 0.00 3.10
719 724 4.783227 TGTTACCCTATTTGCCTCTCTCTT 59.217 41.667 0.00 0.00 0.00 2.85
720 725 5.104900 TGTTACCCTATTTGCCTCTCTCTTC 60.105 44.000 0.00 0.00 0.00 2.87
721 726 3.454858 ACCCTATTTGCCTCTCTCTTCA 58.545 45.455 0.00 0.00 0.00 3.02
722 727 4.043596 ACCCTATTTGCCTCTCTCTTCAT 58.956 43.478 0.00 0.00 0.00 2.57
723 728 4.476479 ACCCTATTTGCCTCTCTCTTCATT 59.524 41.667 0.00 0.00 0.00 2.57
724 729 5.667626 ACCCTATTTGCCTCTCTCTTCATTA 59.332 40.000 0.00 0.00 0.00 1.90
725 730 6.158695 ACCCTATTTGCCTCTCTCTTCATTAA 59.841 38.462 0.00 0.00 0.00 1.40
726 731 6.484977 CCCTATTTGCCTCTCTCTTCATTAAC 59.515 42.308 0.00 0.00 0.00 2.01
727 732 7.278875 CCTATTTGCCTCTCTCTTCATTAACT 58.721 38.462 0.00 0.00 0.00 2.24
728 733 8.424918 CCTATTTGCCTCTCTCTTCATTAACTA 58.575 37.037 0.00 0.00 0.00 2.24
729 734 9.255304 CTATTTGCCTCTCTCTTCATTAACTAC 57.745 37.037 0.00 0.00 0.00 2.73
730 735 6.859112 TTGCCTCTCTCTTCATTAACTACT 57.141 37.500 0.00 0.00 0.00 2.57
731 736 6.859112 TGCCTCTCTCTTCATTAACTACTT 57.141 37.500 0.00 0.00 0.00 2.24
732 737 6.634805 TGCCTCTCTCTTCATTAACTACTTG 58.365 40.000 0.00 0.00 0.00 3.16
733 738 5.522097 GCCTCTCTCTTCATTAACTACTTGC 59.478 44.000 0.00 0.00 0.00 4.01
734 739 6.045955 CCTCTCTCTTCATTAACTACTTGCC 58.954 44.000 0.00 0.00 0.00 4.52
735 740 6.351371 CCTCTCTCTTCATTAACTACTTGCCA 60.351 42.308 0.00 0.00 0.00 4.92
736 741 6.398918 TCTCTCTTCATTAACTACTTGCCAC 58.601 40.000 0.00 0.00 0.00 5.01
737 742 6.014584 TCTCTCTTCATTAACTACTTGCCACA 60.015 38.462 0.00 0.00 0.00 4.17
738 743 6.711277 TCTCTTCATTAACTACTTGCCACAT 58.289 36.000 0.00 0.00 0.00 3.21
739 744 6.818644 TCTCTTCATTAACTACTTGCCACATC 59.181 38.462 0.00 0.00 0.00 3.06
740 745 6.472016 TCTTCATTAACTACTTGCCACATCA 58.528 36.000 0.00 0.00 0.00 3.07
741 746 7.112122 TCTTCATTAACTACTTGCCACATCAT 58.888 34.615 0.00 0.00 0.00 2.45
742 747 6.925610 TCATTAACTACTTGCCACATCATC 57.074 37.500 0.00 0.00 0.00 2.92
743 748 6.413892 TCATTAACTACTTGCCACATCATCA 58.586 36.000 0.00 0.00 0.00 3.07
744 749 7.056006 TCATTAACTACTTGCCACATCATCAT 58.944 34.615 0.00 0.00 0.00 2.45
745 750 7.557358 TCATTAACTACTTGCCACATCATCATT 59.443 33.333 0.00 0.00 0.00 2.57
746 751 7.701539 TTAACTACTTGCCACATCATCATTT 57.298 32.000 0.00 0.00 0.00 2.32
747 752 6.594788 AACTACTTGCCACATCATCATTTT 57.405 33.333 0.00 0.00 0.00 1.82
748 753 6.594788 ACTACTTGCCACATCATCATTTTT 57.405 33.333 0.00 0.00 0.00 1.94
749 754 6.392354 ACTACTTGCCACATCATCATTTTTG 58.608 36.000 0.00 0.00 0.00 2.44
750 755 3.998341 ACTTGCCACATCATCATTTTTGC 59.002 39.130 0.00 0.00 0.00 3.68
751 756 3.965379 TGCCACATCATCATTTTTGCT 57.035 38.095 0.00 0.00 0.00 3.91
752 757 4.274602 TGCCACATCATCATTTTTGCTT 57.725 36.364 0.00 0.00 0.00 3.91
753 758 5.402997 TGCCACATCATCATTTTTGCTTA 57.597 34.783 0.00 0.00 0.00 3.09
754 759 5.979993 TGCCACATCATCATTTTTGCTTAT 58.020 33.333 0.00 0.00 0.00 1.73
755 760 5.813157 TGCCACATCATCATTTTTGCTTATG 59.187 36.000 0.00 0.00 0.00 1.90
756 761 5.813672 GCCACATCATCATTTTTGCTTATGT 59.186 36.000 0.00 0.00 0.00 2.29
757 762 6.237996 GCCACATCATCATTTTTGCTTATGTG 60.238 38.462 0.00 0.00 41.50 3.21
758 763 7.229228 CACATCATCATTTTTGCTTATGTGG 57.771 36.000 0.00 0.00 39.34 4.17
759 764 5.813672 ACATCATCATTTTTGCTTATGTGGC 59.186 36.000 0.00 0.00 0.00 5.01
760 765 5.402997 TCATCATTTTTGCTTATGTGGCA 57.597 34.783 0.00 0.00 37.97 4.92
761 766 5.979993 TCATCATTTTTGCTTATGTGGCAT 58.020 33.333 0.00 0.00 39.54 4.40
762 767 6.044046 TCATCATTTTTGCTTATGTGGCATC 58.956 36.000 0.00 0.00 39.54 3.91
763 768 5.664294 TCATTTTTGCTTATGTGGCATCT 57.336 34.783 0.00 0.00 39.54 2.90
764 769 6.772360 TCATTTTTGCTTATGTGGCATCTA 57.228 33.333 0.00 0.00 39.54 1.98
765 770 7.350744 TCATTTTTGCTTATGTGGCATCTAT 57.649 32.000 0.00 0.00 39.54 1.98
766 771 7.204604 TCATTTTTGCTTATGTGGCATCTATG 58.795 34.615 0.00 0.00 39.54 2.23
767 772 6.528537 TTTTTGCTTATGTGGCATCTATGT 57.471 33.333 0.00 0.00 39.54 2.29
768 773 6.528537 TTTTGCTTATGTGGCATCTATGTT 57.471 33.333 0.00 0.00 39.54 2.71
769 774 7.637631 TTTTGCTTATGTGGCATCTATGTTA 57.362 32.000 0.00 0.00 39.54 2.41
770 775 6.618287 TTGCTTATGTGGCATCTATGTTAC 57.382 37.500 0.00 0.00 39.54 2.50
771 776 5.928976 TGCTTATGTGGCATCTATGTTACT 58.071 37.500 0.00 0.00 34.56 2.24
772 777 7.061566 TGCTTATGTGGCATCTATGTTACTA 57.938 36.000 0.00 0.00 34.56 1.82
773 778 6.929049 TGCTTATGTGGCATCTATGTTACTAC 59.071 38.462 0.00 0.00 34.56 2.73
774 779 6.369065 GCTTATGTGGCATCTATGTTACTACC 59.631 42.308 0.00 0.00 0.00 3.18
775 780 7.612065 TTATGTGGCATCTATGTTACTACCT 57.388 36.000 0.00 0.00 0.00 3.08
776 781 8.715190 TTATGTGGCATCTATGTTACTACCTA 57.285 34.615 0.00 0.00 0.00 3.08
777 782 7.798710 ATGTGGCATCTATGTTACTACCTAT 57.201 36.000 0.00 0.00 0.00 2.57
778 783 6.993079 TGTGGCATCTATGTTACTACCTATG 58.007 40.000 0.00 0.00 0.00 2.23
779 784 6.553476 TGTGGCATCTATGTTACTACCTATGT 59.447 38.462 0.00 0.00 0.00 2.29
780 785 7.070696 TGTGGCATCTATGTTACTACCTATGTT 59.929 37.037 0.00 0.00 0.00 2.71
781 786 8.582437 GTGGCATCTATGTTACTACCTATGTTA 58.418 37.037 0.00 0.00 0.00 2.41
782 787 8.582437 TGGCATCTATGTTACTACCTATGTTAC 58.418 37.037 0.00 0.00 0.00 2.50
783 788 8.033626 GGCATCTATGTTACTACCTATGTTACC 58.966 40.741 0.00 0.00 0.00 2.85
784 789 8.582437 GCATCTATGTTACTACCTATGTTACCA 58.418 37.037 0.00 0.00 0.00 3.25
786 791 8.174733 TCTATGTTACTACCTATGTTACCAGC 57.825 38.462 0.00 0.00 0.00 4.85
787 792 5.603170 TGTTACTACCTATGTTACCAGCC 57.397 43.478 0.00 0.00 0.00 4.85
788 793 5.274822 TGTTACTACCTATGTTACCAGCCT 58.725 41.667 0.00 0.00 0.00 4.58
789 794 5.722923 TGTTACTACCTATGTTACCAGCCTT 59.277 40.000 0.00 0.00 0.00 4.35
790 795 6.896860 TGTTACTACCTATGTTACCAGCCTTA 59.103 38.462 0.00 0.00 0.00 2.69
791 796 5.866159 ACTACCTATGTTACCAGCCTTAC 57.134 43.478 0.00 0.00 0.00 2.34
792 797 5.526434 ACTACCTATGTTACCAGCCTTACT 58.474 41.667 0.00 0.00 0.00 2.24
793 798 4.755266 ACCTATGTTACCAGCCTTACTG 57.245 45.455 0.00 0.00 46.77 2.74
794 799 3.118371 ACCTATGTTACCAGCCTTACTGC 60.118 47.826 0.00 0.00 45.78 4.40
795 800 3.118408 CCTATGTTACCAGCCTTACTGCA 60.118 47.826 0.00 0.00 45.78 4.41
796 801 2.472695 TGTTACCAGCCTTACTGCAG 57.527 50.000 13.48 13.48 45.78 4.41
797 802 1.974957 TGTTACCAGCCTTACTGCAGA 59.025 47.619 23.35 0.48 45.78 4.26
798 803 2.289444 TGTTACCAGCCTTACTGCAGAC 60.289 50.000 23.35 3.60 45.78 3.51
811 816 3.084786 ACTGCAGACCTTTTTATCTGGC 58.915 45.455 23.35 0.00 0.00 4.85
816 821 4.379918 GCAGACCTTTTTATCTGGCAAGAC 60.380 45.833 0.00 0.00 34.48 3.01
928 933 4.753516 TCTGCTCCCTTTATCGAATTCA 57.246 40.909 6.22 0.00 0.00 2.57
1223 1228 8.519799 AGTTTGATGTTTTCAGAAACTAGGAA 57.480 30.769 0.00 0.00 44.33 3.36
1237 1242 3.010420 ACTAGGAATTTTTCGCTCCTGC 58.990 45.455 0.02 0.00 32.43 4.85
1256 1261 0.946221 CTCCACCTGTTGACACGCTC 60.946 60.000 0.00 0.00 0.00 5.03
1405 1418 1.659098 CCGTTCAGTTGATACGCCTTC 59.341 52.381 9.68 0.00 34.16 3.46
1413 1427 4.452455 CAGTTGATACGCCTTCTTTTCTGT 59.548 41.667 0.00 0.00 0.00 3.41
1531 1545 7.514721 AGGTTCAGTTTACCATTCTCAAGTAA 58.485 34.615 0.00 0.00 38.16 2.24
2117 2136 1.285078 AGGGTTTCCTTATGCCTGACC 59.715 52.381 0.00 0.00 41.56 4.02
2180 2199 5.067273 CAGTAGGTCATACTCCCTCTGTAG 58.933 50.000 0.00 0.00 43.13 2.74
2622 2794 9.191995 GTTTGGTTCCATTTATTTACTCACTTG 57.808 33.333 0.00 0.00 0.00 3.16
2646 2818 1.140252 GGTGGTGTTGTACAGAGGTGT 59.860 52.381 0.00 0.00 41.06 4.16
3097 3269 1.838077 GAGGGTGTATACTTGCCACCT 59.162 52.381 4.17 2.85 46.30 4.00
3163 3335 1.725803 AACCGTGGTAGGGAAGAGTT 58.274 50.000 0.00 0.00 35.02 3.01
3192 3364 2.173356 TCCCATCCTCTTTGCCACATAG 59.827 50.000 0.00 0.00 0.00 2.23
3289 3461 3.819564 AGGCGTTATCTAACATGAGCA 57.180 42.857 0.00 0.00 35.99 4.26
3622 3877 2.416107 TTTGAGCAGGTCAGGGCAGG 62.416 60.000 1.86 0.00 36.21 4.85
3734 3989 1.599576 GGTCCCTGAGAGCCTGAAC 59.400 63.158 0.00 0.00 36.99 3.18
3825 4080 2.084546 AGCTCGATTTTGTAAGTGCCC 58.915 47.619 0.00 0.00 0.00 5.36
3826 4081 2.084546 GCTCGATTTTGTAAGTGCCCT 58.915 47.619 0.00 0.00 0.00 5.19
3910 4165 1.303888 CTCACCTTGGCACCTGCAT 60.304 57.895 0.00 0.00 44.36 3.96
3923 4182 3.618019 GCACCTGCATTCCATCAACAAAT 60.618 43.478 0.00 0.00 41.59 2.32
3924 4183 4.571919 CACCTGCATTCCATCAACAAATT 58.428 39.130 0.00 0.00 0.00 1.82
3925 4184 5.722263 CACCTGCATTCCATCAACAAATTA 58.278 37.500 0.00 0.00 0.00 1.40
3926 4185 6.164876 CACCTGCATTCCATCAACAAATTAA 58.835 36.000 0.00 0.00 0.00 1.40
3927 4186 6.311935 CACCTGCATTCCATCAACAAATTAAG 59.688 38.462 0.00 0.00 0.00 1.85
3928 4187 6.014327 ACCTGCATTCCATCAACAAATTAAGT 60.014 34.615 0.00 0.00 0.00 2.24
3929 4188 7.178274 ACCTGCATTCCATCAACAAATTAAGTA 59.822 33.333 0.00 0.00 0.00 2.24
3930 4189 7.489113 CCTGCATTCCATCAACAAATTAAGTAC 59.511 37.037 0.00 0.00 0.00 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.691118 TCTAGTGCATTGTTGGATCAAGC 59.309 43.478 0.00 0.00 0.00 4.01
9 10 0.676782 GGCCCGTCTAGTGCATTGTT 60.677 55.000 0.00 0.00 0.00 2.83
27 28 1.146930 ATGTAGTGCATCCAGCCGG 59.853 57.895 0.00 0.00 44.83 6.13
29 30 1.303309 GACATGTAGTGCATCCAGCC 58.697 55.000 0.00 0.00 44.83 4.85
48 50 1.212616 GTGAGCAATCCTTCGATCCG 58.787 55.000 0.00 0.00 0.00 4.18
56 58 2.479566 AACACATCGTGAGCAATCCT 57.520 45.000 0.24 0.00 36.96 3.24
114 116 6.385033 ACAAGCTGAATTTAATTGTGAGCTC 58.615 36.000 6.82 6.82 34.26 4.09
259 263 8.845413 ATACTCCATCATAAGAGCAATTTCTC 57.155 34.615 0.00 0.00 33.18 2.87
346 350 7.807977 TTAGGAAATCATGATGGCTTACTTC 57.192 36.000 9.46 7.19 0.00 3.01
375 380 4.981806 TGTTATTAATGCTGGCTTCACC 57.018 40.909 0.00 0.00 39.84 4.02
401 406 3.966218 GTCGTCTGTTTGGTTGAAAATCG 59.034 43.478 0.00 0.00 0.00 3.34
465 470 7.060421 TGAAGTAAAGATGGGGCTTAATTAGG 58.940 38.462 0.00 0.00 0.00 2.69
485 490 6.681729 TTCCTTGACCAGTTAGTATGAAGT 57.318 37.500 0.00 0.00 0.00 3.01
486 491 7.118390 CACTTTCCTTGACCAGTTAGTATGAAG 59.882 40.741 0.00 0.00 0.00 3.02
487 492 6.934645 CACTTTCCTTGACCAGTTAGTATGAA 59.065 38.462 0.00 0.00 0.00 2.57
489 494 5.643777 CCACTTTCCTTGACCAGTTAGTATG 59.356 44.000 0.00 0.00 0.00 2.39
490 495 5.309806 ACCACTTTCCTTGACCAGTTAGTAT 59.690 40.000 0.00 0.00 0.00 2.12
491 496 4.657039 ACCACTTTCCTTGACCAGTTAGTA 59.343 41.667 0.00 0.00 0.00 1.82
492 497 3.458487 ACCACTTTCCTTGACCAGTTAGT 59.542 43.478 0.00 0.00 0.00 2.24
493 498 4.086706 ACCACTTTCCTTGACCAGTTAG 57.913 45.455 0.00 0.00 0.00 2.34
527 532 0.983378 ACTCCCCACTATGACCAGCC 60.983 60.000 0.00 0.00 0.00 4.85
528 533 1.789523 TACTCCCCACTATGACCAGC 58.210 55.000 0.00 0.00 0.00 4.85
529 534 3.375699 AGTTACTCCCCACTATGACCAG 58.624 50.000 0.00 0.00 0.00 4.00
530 535 3.484953 AGTTACTCCCCACTATGACCA 57.515 47.619 0.00 0.00 0.00 4.02
531 536 5.068855 GTCTAAGTTACTCCCCACTATGACC 59.931 48.000 0.00 0.00 0.00 4.02
533 538 6.088541 AGTCTAAGTTACTCCCCACTATGA 57.911 41.667 0.00 0.00 0.00 2.15
534 539 7.061688 ACTAGTCTAAGTTACTCCCCACTATG 58.938 42.308 0.00 0.00 0.00 2.23
535 540 7.223472 ACTAGTCTAAGTTACTCCCCACTAT 57.777 40.000 0.00 0.00 0.00 2.12
536 541 6.649041 ACTAGTCTAAGTTACTCCCCACTA 57.351 41.667 0.00 0.00 0.00 2.74
537 542 5.533333 ACTAGTCTAAGTTACTCCCCACT 57.467 43.478 0.00 0.00 0.00 4.00
538 543 6.660949 TGTTACTAGTCTAAGTTACTCCCCAC 59.339 42.308 0.00 0.00 31.82 4.61
539 544 6.793478 TGTTACTAGTCTAAGTTACTCCCCA 58.207 40.000 0.00 0.00 31.82 4.96
540 545 7.894753 ATGTTACTAGTCTAAGTTACTCCCC 57.105 40.000 0.00 0.00 31.82 4.81
541 546 9.401058 TGTATGTTACTAGTCTAAGTTACTCCC 57.599 37.037 0.00 0.00 31.82 4.30
577 582 8.871125 CCCACTATGAAGGTAGTAACATAGATT 58.129 37.037 16.37 0.00 42.41 2.40
578 583 8.011290 ACCCACTATGAAGGTAGTAACATAGAT 58.989 37.037 16.37 2.75 42.41 1.98
579 584 7.359849 ACCCACTATGAAGGTAGTAACATAGA 58.640 38.462 16.37 0.00 42.41 1.98
580 585 7.598759 ACCCACTATGAAGGTAGTAACATAG 57.401 40.000 0.00 0.00 44.14 2.23
581 586 8.701908 CTACCCACTATGAAGGTAGTAACATA 57.298 38.462 7.19 0.00 45.39 2.29
582 587 7.598759 CTACCCACTATGAAGGTAGTAACAT 57.401 40.000 7.19 0.00 45.39 2.71
589 594 4.938028 TGACACTACCCACTATGAAGGTA 58.062 43.478 0.00 0.00 35.02 3.08
590 595 3.786553 TGACACTACCCACTATGAAGGT 58.213 45.455 0.00 0.00 37.69 3.50
591 596 5.011125 CCTATGACACTACCCACTATGAAGG 59.989 48.000 0.00 0.00 0.00 3.46
592 597 5.598830 ACCTATGACACTACCCACTATGAAG 59.401 44.000 0.00 0.00 0.00 3.02
593 598 5.362717 CACCTATGACACTACCCACTATGAA 59.637 44.000 0.00 0.00 0.00 2.57
594 599 4.893524 CACCTATGACACTACCCACTATGA 59.106 45.833 0.00 0.00 0.00 2.15
595 600 4.649674 ACACCTATGACACTACCCACTATG 59.350 45.833 0.00 0.00 0.00 2.23
596 601 4.649674 CACACCTATGACACTACCCACTAT 59.350 45.833 0.00 0.00 0.00 2.12
597 602 4.021229 CACACCTATGACACTACCCACTA 58.979 47.826 0.00 0.00 0.00 2.74
598 603 2.832129 CACACCTATGACACTACCCACT 59.168 50.000 0.00 0.00 0.00 4.00
599 604 2.093658 CCACACCTATGACACTACCCAC 60.094 54.545 0.00 0.00 0.00 4.61
600 605 2.184533 CCACACCTATGACACTACCCA 58.815 52.381 0.00 0.00 0.00 4.51
601 606 2.185387 ACCACACCTATGACACTACCC 58.815 52.381 0.00 0.00 0.00 3.69
602 607 4.221262 TGTTACCACACCTATGACACTACC 59.779 45.833 0.00 0.00 0.00 3.18
603 608 5.395682 TGTTACCACACCTATGACACTAC 57.604 43.478 0.00 0.00 0.00 2.73
604 609 6.893554 ACTATGTTACCACACCTATGACACTA 59.106 38.462 0.00 0.00 35.03 2.74
605 610 5.720041 ACTATGTTACCACACCTATGACACT 59.280 40.000 0.00 0.00 35.03 3.55
606 611 5.974108 ACTATGTTACCACACCTATGACAC 58.026 41.667 0.00 0.00 35.03 3.67
607 612 6.403049 CAACTATGTTACCACACCTATGACA 58.597 40.000 0.00 0.00 35.03 3.58
608 613 5.293569 GCAACTATGTTACCACACCTATGAC 59.706 44.000 0.00 0.00 35.03 3.06
609 614 5.424757 GCAACTATGTTACCACACCTATGA 58.575 41.667 0.00 0.00 35.03 2.15
610 615 4.574828 GGCAACTATGTTACCACACCTATG 59.425 45.833 0.00 0.00 35.03 2.23
611 616 4.777463 GGCAACTATGTTACCACACCTAT 58.223 43.478 0.00 0.00 35.03 2.57
612 617 4.210724 GGCAACTATGTTACCACACCTA 57.789 45.455 0.00 0.00 35.03 3.08
613 618 3.067684 GGCAACTATGTTACCACACCT 57.932 47.619 0.00 0.00 35.03 4.00
628 633 9.556030 GTCTACAAAGTAATAAATGAAGGCAAC 57.444 33.333 0.00 0.00 0.00 4.17
629 634 9.515226 AGTCTACAAAGTAATAAATGAAGGCAA 57.485 29.630 0.00 0.00 0.00 4.52
630 635 9.162764 GAGTCTACAAAGTAATAAATGAAGGCA 57.837 33.333 0.00 0.00 0.00 4.75
631 636 9.162764 TGAGTCTACAAAGTAATAAATGAAGGC 57.837 33.333 0.00 0.00 0.00 4.35
642 647 8.892723 CCAATGCATAATGAGTCTACAAAGTAA 58.107 33.333 0.00 0.00 0.00 2.24
643 648 8.264347 TCCAATGCATAATGAGTCTACAAAGTA 58.736 33.333 0.00 0.00 0.00 2.24
644 649 7.112122 TCCAATGCATAATGAGTCTACAAAGT 58.888 34.615 0.00 0.00 0.00 2.66
645 650 7.558161 TCCAATGCATAATGAGTCTACAAAG 57.442 36.000 0.00 0.00 0.00 2.77
646 651 7.936496 TTCCAATGCATAATGAGTCTACAAA 57.064 32.000 0.00 0.00 0.00 2.83
647 652 7.148086 GGTTTCCAATGCATAATGAGTCTACAA 60.148 37.037 0.00 0.00 0.00 2.41
648 653 6.318648 GGTTTCCAATGCATAATGAGTCTACA 59.681 38.462 0.00 0.00 0.00 2.74
649 654 6.511767 CGGTTTCCAATGCATAATGAGTCTAC 60.512 42.308 0.00 0.00 0.00 2.59
650 655 5.527214 CGGTTTCCAATGCATAATGAGTCTA 59.473 40.000 0.00 0.00 0.00 2.59
651 656 4.336433 CGGTTTCCAATGCATAATGAGTCT 59.664 41.667 0.00 0.00 0.00 3.24
652 657 4.601019 CGGTTTCCAATGCATAATGAGTC 58.399 43.478 0.00 0.00 0.00 3.36
653 658 3.181487 GCGGTTTCCAATGCATAATGAGT 60.181 43.478 0.00 0.00 0.00 3.41
654 659 3.067180 AGCGGTTTCCAATGCATAATGAG 59.933 43.478 0.00 0.00 0.00 2.90
655 660 3.023119 AGCGGTTTCCAATGCATAATGA 58.977 40.909 0.00 0.00 0.00 2.57
656 661 3.441496 AGCGGTTTCCAATGCATAATG 57.559 42.857 0.00 0.00 0.00 1.90
657 662 4.584325 ACATAGCGGTTTCCAATGCATAAT 59.416 37.500 0.00 0.00 0.00 1.28
658 663 3.951037 ACATAGCGGTTTCCAATGCATAA 59.049 39.130 0.00 0.00 0.00 1.90
659 664 3.314913 CACATAGCGGTTTCCAATGCATA 59.685 43.478 0.00 0.00 0.00 3.14
660 665 2.099592 CACATAGCGGTTTCCAATGCAT 59.900 45.455 0.00 0.00 0.00 3.96
661 666 1.472082 CACATAGCGGTTTCCAATGCA 59.528 47.619 0.00 0.00 0.00 3.96
662 667 1.742831 TCACATAGCGGTTTCCAATGC 59.257 47.619 0.00 0.00 0.00 3.56
663 668 3.243168 CCATCACATAGCGGTTTCCAATG 60.243 47.826 0.00 0.00 0.00 2.82
664 669 2.951642 CCATCACATAGCGGTTTCCAAT 59.048 45.455 0.00 0.00 0.00 3.16
665 670 2.290641 ACCATCACATAGCGGTTTCCAA 60.291 45.455 0.00 0.00 0.00 3.53
666 671 1.280710 ACCATCACATAGCGGTTTCCA 59.719 47.619 0.00 0.00 0.00 3.53
667 672 2.038387 ACCATCACATAGCGGTTTCC 57.962 50.000 0.00 0.00 0.00 3.13
668 673 3.936453 TGTTACCATCACATAGCGGTTTC 59.064 43.478 0.00 0.00 32.81 2.78
669 674 3.945346 TGTTACCATCACATAGCGGTTT 58.055 40.909 0.00 0.00 32.81 3.27
670 675 3.620427 TGTTACCATCACATAGCGGTT 57.380 42.857 0.00 0.00 32.81 4.44
671 676 3.838244 ATGTTACCATCACATAGCGGT 57.162 42.857 0.00 0.00 32.88 5.68
672 677 7.549134 ACATAATATGTTACCATCACATAGCGG 59.451 37.037 0.00 0.00 41.63 5.52
673 678 8.479313 ACATAATATGTTACCATCACATAGCG 57.521 34.615 0.00 0.00 41.63 4.26
689 694 9.167311 GAGAGGCAAATAGGGTAACATAATATG 57.833 37.037 0.00 0.00 35.84 1.78
690 695 9.117223 AGAGAGGCAAATAGGGTAACATAATAT 57.883 33.333 0.00 0.00 35.84 1.28
691 696 8.506196 AGAGAGGCAAATAGGGTAACATAATA 57.494 34.615 0.00 0.00 35.84 0.98
692 697 7.293535 AGAGAGAGGCAAATAGGGTAACATAAT 59.706 37.037 0.00 0.00 35.84 1.28
693 698 6.615726 AGAGAGAGGCAAATAGGGTAACATAA 59.384 38.462 0.00 0.00 35.84 1.90
694 699 6.143915 AGAGAGAGGCAAATAGGGTAACATA 58.856 40.000 0.00 0.00 37.19 2.29
695 700 4.971924 AGAGAGAGGCAAATAGGGTAACAT 59.028 41.667 0.00 0.00 39.74 2.71
696 701 4.362677 AGAGAGAGGCAAATAGGGTAACA 58.637 43.478 0.00 0.00 39.74 2.41
697 702 5.104900 TGAAGAGAGAGGCAAATAGGGTAAC 60.105 44.000 0.00 0.00 0.00 2.50
698 703 5.030147 TGAAGAGAGAGGCAAATAGGGTAA 58.970 41.667 0.00 0.00 0.00 2.85
699 704 4.620723 TGAAGAGAGAGGCAAATAGGGTA 58.379 43.478 0.00 0.00 0.00 3.69
700 705 3.454858 TGAAGAGAGAGGCAAATAGGGT 58.545 45.455 0.00 0.00 0.00 4.34
701 706 4.703379 ATGAAGAGAGAGGCAAATAGGG 57.297 45.455 0.00 0.00 0.00 3.53
702 707 7.278875 AGTTAATGAAGAGAGAGGCAAATAGG 58.721 38.462 0.00 0.00 0.00 2.57
703 708 9.255304 GTAGTTAATGAAGAGAGAGGCAAATAG 57.745 37.037 0.00 0.00 0.00 1.73
704 709 8.982723 AGTAGTTAATGAAGAGAGAGGCAAATA 58.017 33.333 0.00 0.00 0.00 1.40
705 710 7.856415 AGTAGTTAATGAAGAGAGAGGCAAAT 58.144 34.615 0.00 0.00 0.00 2.32
706 711 7.246171 AGTAGTTAATGAAGAGAGAGGCAAA 57.754 36.000 0.00 0.00 0.00 3.68
707 712 6.859112 AGTAGTTAATGAAGAGAGAGGCAA 57.141 37.500 0.00 0.00 0.00 4.52
708 713 6.634805 CAAGTAGTTAATGAAGAGAGAGGCA 58.365 40.000 0.00 0.00 0.00 4.75
709 714 5.522097 GCAAGTAGTTAATGAAGAGAGAGGC 59.478 44.000 0.00 0.00 0.00 4.70
710 715 6.045955 GGCAAGTAGTTAATGAAGAGAGAGG 58.954 44.000 0.00 0.00 0.00 3.69
711 716 6.533367 GTGGCAAGTAGTTAATGAAGAGAGAG 59.467 42.308 0.00 0.00 0.00 3.20
712 717 6.014584 TGTGGCAAGTAGTTAATGAAGAGAGA 60.015 38.462 0.00 0.00 0.00 3.10
713 718 6.166279 TGTGGCAAGTAGTTAATGAAGAGAG 58.834 40.000 0.00 0.00 0.00 3.20
714 719 6.109156 TGTGGCAAGTAGTTAATGAAGAGA 57.891 37.500 0.00 0.00 0.00 3.10
715 720 6.595326 TGATGTGGCAAGTAGTTAATGAAGAG 59.405 38.462 0.00 0.00 0.00 2.85
716 721 6.472016 TGATGTGGCAAGTAGTTAATGAAGA 58.528 36.000 0.00 0.00 0.00 2.87
717 722 6.741992 TGATGTGGCAAGTAGTTAATGAAG 57.258 37.500 0.00 0.00 0.00 3.02
718 723 6.883756 TGATGATGTGGCAAGTAGTTAATGAA 59.116 34.615 0.00 0.00 0.00 2.57
719 724 6.413892 TGATGATGTGGCAAGTAGTTAATGA 58.586 36.000 0.00 0.00 0.00 2.57
720 725 6.682423 TGATGATGTGGCAAGTAGTTAATG 57.318 37.500 0.00 0.00 0.00 1.90
721 726 7.886629 AATGATGATGTGGCAAGTAGTTAAT 57.113 32.000 0.00 0.00 0.00 1.40
722 727 7.701539 AAATGATGATGTGGCAAGTAGTTAA 57.298 32.000 0.00 0.00 0.00 2.01
723 728 7.701539 AAAATGATGATGTGGCAAGTAGTTA 57.298 32.000 0.00 0.00 0.00 2.24
724 729 6.594788 AAAATGATGATGTGGCAAGTAGTT 57.405 33.333 0.00 0.00 0.00 2.24
725 730 6.392354 CAAAAATGATGATGTGGCAAGTAGT 58.608 36.000 0.00 0.00 0.00 2.73
726 731 5.290158 GCAAAAATGATGATGTGGCAAGTAG 59.710 40.000 0.00 0.00 0.00 2.57
727 732 5.047164 AGCAAAAATGATGATGTGGCAAGTA 60.047 36.000 0.00 0.00 0.00 2.24
728 733 3.998341 GCAAAAATGATGATGTGGCAAGT 59.002 39.130 0.00 0.00 0.00 3.16
729 734 4.250464 AGCAAAAATGATGATGTGGCAAG 58.750 39.130 0.00 0.00 0.00 4.01
730 735 4.274602 AGCAAAAATGATGATGTGGCAA 57.725 36.364 0.00 0.00 0.00 4.52
731 736 3.965379 AGCAAAAATGATGATGTGGCA 57.035 38.095 0.00 0.00 0.00 4.92
732 737 5.813672 ACATAAGCAAAAATGATGATGTGGC 59.186 36.000 0.00 0.00 0.00 5.01
733 738 7.229228 CACATAAGCAAAAATGATGATGTGG 57.771 36.000 14.08 0.34 39.34 4.17
734 739 6.237996 GCCACATAAGCAAAAATGATGATGTG 60.238 38.462 14.69 14.69 41.53 3.21
735 740 5.813672 GCCACATAAGCAAAAATGATGATGT 59.186 36.000 0.00 0.00 0.00 3.06
736 741 5.813157 TGCCACATAAGCAAAAATGATGATG 59.187 36.000 0.00 0.00 37.28 3.07
737 742 5.979993 TGCCACATAAGCAAAAATGATGAT 58.020 33.333 0.00 0.00 37.28 2.45
738 743 5.402997 TGCCACATAAGCAAAAATGATGA 57.597 34.783 0.00 0.00 37.28 2.92
739 744 6.046593 AGATGCCACATAAGCAAAAATGATG 58.953 36.000 0.00 0.00 44.83 3.07
740 745 6.229936 AGATGCCACATAAGCAAAAATGAT 57.770 33.333 0.00 0.00 44.83 2.45
741 746 5.664294 AGATGCCACATAAGCAAAAATGA 57.336 34.783 0.00 0.00 44.83 2.57
742 747 6.982141 ACATAGATGCCACATAAGCAAAAATG 59.018 34.615 0.00 0.00 44.83 2.32
743 748 7.116075 ACATAGATGCCACATAAGCAAAAAT 57.884 32.000 0.00 0.00 44.83 1.82
744 749 6.528537 ACATAGATGCCACATAAGCAAAAA 57.471 33.333 0.00 0.00 44.83 1.94
745 750 6.528537 AACATAGATGCCACATAAGCAAAA 57.471 33.333 0.00 0.00 44.83 2.44
746 751 6.828273 AGTAACATAGATGCCACATAAGCAAA 59.172 34.615 0.00 0.00 44.83 3.68
747 752 6.356556 AGTAACATAGATGCCACATAAGCAA 58.643 36.000 0.00 0.00 44.83 3.91
748 753 5.928976 AGTAACATAGATGCCACATAAGCA 58.071 37.500 0.00 0.00 45.94 3.91
749 754 6.369065 GGTAGTAACATAGATGCCACATAAGC 59.631 42.308 0.00 0.00 0.00 3.09
750 755 7.671302 AGGTAGTAACATAGATGCCACATAAG 58.329 38.462 0.00 0.00 0.00 1.73
751 756 7.612065 AGGTAGTAACATAGATGCCACATAA 57.388 36.000 0.00 0.00 0.00 1.90
752 757 8.749354 CATAGGTAGTAACATAGATGCCACATA 58.251 37.037 0.00 0.00 0.00 2.29
753 758 7.235606 ACATAGGTAGTAACATAGATGCCACAT 59.764 37.037 0.00 0.00 0.00 3.21
754 759 6.553476 ACATAGGTAGTAACATAGATGCCACA 59.447 38.462 0.00 0.00 0.00 4.17
755 760 6.994221 ACATAGGTAGTAACATAGATGCCAC 58.006 40.000 0.00 0.00 0.00 5.01
756 761 7.612065 AACATAGGTAGTAACATAGATGCCA 57.388 36.000 0.00 0.00 0.00 4.92
757 762 8.033626 GGTAACATAGGTAGTAACATAGATGCC 58.966 40.741 0.00 0.00 0.00 4.40
758 763 8.582437 TGGTAACATAGGTAGTAACATAGATGC 58.418 37.037 0.00 0.00 46.17 3.91
778 783 2.347731 GTCTGCAGTAAGGCTGGTAAC 58.652 52.381 14.67 0.00 45.14 2.50
779 784 1.278127 GGTCTGCAGTAAGGCTGGTAA 59.722 52.381 14.67 0.00 45.14 2.85
780 785 0.902531 GGTCTGCAGTAAGGCTGGTA 59.097 55.000 14.67 0.00 45.14 3.25
781 786 0.838122 AGGTCTGCAGTAAGGCTGGT 60.838 55.000 14.67 0.00 45.14 4.00
782 787 0.326264 AAGGTCTGCAGTAAGGCTGG 59.674 55.000 14.67 0.00 45.14 4.85
784 789 2.959465 AAAAGGTCTGCAGTAAGGCT 57.041 45.000 14.67 0.00 34.04 4.58
785 790 4.944317 AGATAAAAAGGTCTGCAGTAAGGC 59.056 41.667 14.67 0.34 0.00 4.35
786 791 5.355350 CCAGATAAAAAGGTCTGCAGTAAGG 59.645 44.000 14.67 0.00 0.00 2.69
787 792 5.163713 GCCAGATAAAAAGGTCTGCAGTAAG 60.164 44.000 14.67 0.00 0.00 2.34
788 793 4.700213 GCCAGATAAAAAGGTCTGCAGTAA 59.300 41.667 14.67 0.00 0.00 2.24
789 794 4.261801 GCCAGATAAAAAGGTCTGCAGTA 58.738 43.478 14.67 0.00 0.00 2.74
790 795 3.084786 GCCAGATAAAAAGGTCTGCAGT 58.915 45.455 14.67 0.00 0.00 4.40
791 796 3.084039 TGCCAGATAAAAAGGTCTGCAG 58.916 45.455 7.63 7.63 0.00 4.41
792 797 3.153369 TGCCAGATAAAAAGGTCTGCA 57.847 42.857 0.00 0.00 0.00 4.41
793 798 3.758554 TCTTGCCAGATAAAAAGGTCTGC 59.241 43.478 0.00 0.00 0.00 4.26
794 799 5.006386 AGTCTTGCCAGATAAAAAGGTCTG 58.994 41.667 0.00 0.00 0.00 3.51
795 800 5.248380 AGTCTTGCCAGATAAAAAGGTCT 57.752 39.130 0.00 0.00 0.00 3.85
796 801 4.093556 CGAGTCTTGCCAGATAAAAAGGTC 59.906 45.833 0.00 0.00 0.00 3.85
797 802 4.003648 CGAGTCTTGCCAGATAAAAAGGT 58.996 43.478 0.00 0.00 0.00 3.50
798 803 4.253685 TCGAGTCTTGCCAGATAAAAAGG 58.746 43.478 0.00 0.00 0.00 3.11
1009 1014 2.203209 GGGGAGCCATACCGCTTG 60.203 66.667 0.00 0.00 39.87 4.01
1237 1242 0.946221 GAGCGTGTCAACAGGTGGAG 60.946 60.000 4.92 0.00 34.50 3.86
1256 1261 7.757097 ACAATCATACTAACTCGCAGTTTAG 57.243 36.000 6.82 1.25 39.51 1.85
1405 1418 4.875544 TCCAACACGAAAGACAGAAAAG 57.124 40.909 0.00 0.00 0.00 2.27
1413 1427 4.083003 GGCAACAATATCCAACACGAAAGA 60.083 41.667 0.00 0.00 0.00 2.52
1846 1865 1.774254 TCAGCCTCTTTGGGTTTGAGA 59.226 47.619 0.00 0.00 45.67 3.27
2180 2199 6.092259 ACCTTTGCAGACGTCTTATATTTGTC 59.908 38.462 17.26 1.27 0.00 3.18
2296 2429 4.686091 GCTTTTTCTTCCTGCAAATACCAC 59.314 41.667 0.00 0.00 0.00 4.16
2622 2794 2.548067 CCTCTGTACAACACCACCACTC 60.548 54.545 0.00 0.00 0.00 3.51
2971 3143 3.118920 CCTGCTTCATTGATGGATTTGCA 60.119 43.478 2.16 0.00 0.00 4.08
3163 3335 3.370953 GCAAAGAGGATGGGAAGCTCTTA 60.371 47.826 0.00 0.00 33.81 2.10
3192 3364 6.128138 AGTATGAACTATTTCTATGGGGCC 57.872 41.667 0.00 0.00 32.84 5.80
3224 3396 5.445939 GGCACTGTGTTTCTATTACATCACG 60.446 44.000 9.86 0.00 0.00 4.35
3630 3885 0.324943 GCTACCTCAAGGACAAGCCA 59.675 55.000 2.30 0.00 40.02 4.75
3727 3982 1.166531 AACTGCAACGAGGTTCAGGC 61.167 55.000 0.00 0.00 30.74 4.85
3734 3989 1.237285 CCTCCCAAACTGCAACGAGG 61.237 60.000 0.00 0.00 0.00 4.63
3849 4104 1.074752 CTGAGAAAGTTGAGCGCTCC 58.925 55.000 33.23 19.49 0.00 4.70
3910 4165 7.660617 TGGTACGTACTTAATTTGTTGATGGAA 59.339 33.333 24.07 0.00 0.00 3.53
3923 4182 3.569277 TGCACTCAGTGGTACGTACTTAA 59.431 43.478 24.07 8.69 33.64 1.85
3924 4183 3.148412 TGCACTCAGTGGTACGTACTTA 58.852 45.455 24.07 11.74 33.64 2.24
3925 4184 1.958579 TGCACTCAGTGGTACGTACTT 59.041 47.619 24.07 8.63 33.64 2.24
3926 4185 1.540267 CTGCACTCAGTGGTACGTACT 59.460 52.381 24.07 4.53 35.61 2.73
3927 4186 1.978542 CTGCACTCAGTGGTACGTAC 58.021 55.000 17.56 17.56 35.61 3.67
3928 4187 0.242825 GCTGCACTCAGTGGTACGTA 59.757 55.000 7.00 0.00 42.29 3.57
3929 4188 1.006102 GCTGCACTCAGTGGTACGT 60.006 57.895 7.00 0.00 42.29 3.57
3930 4189 0.390340 ATGCTGCACTCAGTGGTACG 60.390 55.000 7.00 0.00 42.29 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.