Multiple sequence alignment - TraesCS2B01G305000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G305000 chr2B 100.000 3301 0 0 564 3864 435060696 435063996 0.000000e+00 6096.0
1 TraesCS2B01G305000 chr2B 100.000 169 0 0 1 169 435060133 435060301 2.900000e-81 313.0
2 TraesCS2B01G305000 chr2B 98.990 99 1 0 3470 3568 435063504 435063602 1.100000e-40 178.0
3 TraesCS2B01G305000 chr2B 98.990 99 1 0 3372 3470 435063602 435063700 1.100000e-40 178.0
4 TraesCS2B01G305000 chr2B 97.403 77 2 0 567 643 77522457 77522381 8.710000e-27 132.0
5 TraesCS2B01G305000 chr2D 95.636 2727 77 16 662 3351 366296039 366298760 0.000000e+00 4338.0
6 TraesCS2B01G305000 chr2D 89.781 274 24 3 3551 3823 585067039 585067309 7.950000e-92 348.0
7 TraesCS2B01G305000 chr2D 80.909 110 18 3 1464 1571 366296993 366297101 2.470000e-12 84.2
8 TraesCS2B01G305000 chr2A 95.338 2660 83 17 771 3395 495220419 495223072 0.000000e+00 4187.0
9 TraesCS2B01G305000 chr2A 85.409 281 35 5 3551 3825 719255238 719255518 1.760000e-73 287.0
10 TraesCS2B01G305000 chr2A 97.183 71 2 0 658 728 495220205 495220275 1.890000e-23 121.0
11 TraesCS2B01G305000 chr2A 80.909 110 18 3 1464 1571 495221257 495221365 2.470000e-12 84.2
12 TraesCS2B01G305000 chr7B 95.409 893 35 2 2216 3105 201992829 201991940 0.000000e+00 1417.0
13 TraesCS2B01G305000 chr7B 99.327 297 2 0 3568 3864 483761621 483761917 4.390000e-149 538.0
14 TraesCS2B01G305000 chr7B 93.478 230 15 0 947 1176 201993056 201992827 3.700000e-90 342.0
15 TraesCS2B01G305000 chr6D 82.344 657 111 4 2213 2868 252571303 252570651 2.020000e-157 566.0
16 TraesCS2B01G305000 chr6B 82.192 657 112 4 2213 2868 366609086 366609738 9.370000e-156 560.0
17 TraesCS2B01G305000 chr6A 82.219 658 110 6 2213 2868 340906737 340906085 9.370000e-156 560.0
18 TraesCS2B01G305000 chr6A 84.118 170 22 5 5 169 106693361 106693192 4.000000e-35 159.0
19 TraesCS2B01G305000 chr6A 90.588 85 8 0 564 648 106693049 106692965 3.160000e-21 113.0
20 TraesCS2B01G305000 chr4D 95.765 307 11 1 3560 3864 311905667 311905361 9.640000e-136 494.0
21 TraesCS2B01G305000 chr4A 90.123 81 4 3 571 649 692571396 692571318 6.830000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G305000 chr2B 435060133 435063996 3863 False 1691.250000 6096 99.495000 1 3864 4 chr2B.!!$F1 3863
1 TraesCS2B01G305000 chr2D 366296039 366298760 2721 False 2211.100000 4338 88.272500 662 3351 2 chr2D.!!$F2 2689
2 TraesCS2B01G305000 chr2A 495220205 495223072 2867 False 1464.066667 4187 91.143333 658 3395 3 chr2A.!!$F2 2737
3 TraesCS2B01G305000 chr7B 201991940 201993056 1116 True 879.500000 1417 94.443500 947 3105 2 chr7B.!!$R1 2158
4 TraesCS2B01G305000 chr6D 252570651 252571303 652 True 566.000000 566 82.344000 2213 2868 1 chr6D.!!$R1 655
5 TraesCS2B01G305000 chr6B 366609086 366609738 652 False 560.000000 560 82.192000 2213 2868 1 chr6B.!!$F1 655
6 TraesCS2B01G305000 chr6A 340906085 340906737 652 True 560.000000 560 82.219000 2213 2868 1 chr6A.!!$R1 655

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
67 68 0.107456 CGAATCCTCCATGACCAGGG 59.893 60.000 0.00 0.00 0.00 4.45 F
68 69 0.179006 GAATCCTCCATGACCAGGGC 60.179 60.000 0.00 0.00 31.15 5.19 F
134 135 0.387929 TAACGAGCTATGCCTTCCCG 59.612 55.000 0.00 0.00 0.00 5.14 F
137 138 1.301322 GAGCTATGCCTTCCCGCTC 60.301 63.158 0.00 0.00 40.07 5.03 F
139 140 1.596477 GCTATGCCTTCCCGCTCTG 60.596 63.158 0.00 0.00 0.00 3.35 F
1257 1399 1.605712 CCCTCGCATCCGTAGATTTCC 60.606 57.143 0.00 0.00 35.54 3.13 F
1418 1572 1.793258 CGGATCAGATCTGTGGATGC 58.207 55.000 21.92 12.56 31.46 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1611 1765 0.387565 AAACGTGTGGCCCAATTGTC 59.612 50.000 0.00 0.00 0.00 3.18 R
1701 1855 0.947180 CCCACAAAGCATTGCAGTGC 60.947 55.000 25.24 25.24 45.38 4.40 R
1703 1857 1.069049 GTTCCCACAAAGCATTGCAGT 59.931 47.619 11.91 3.54 40.34 4.40 R
1950 2104 1.126846 GCTCTTCACGTGTGGAATTCG 59.873 52.381 16.51 4.65 0.00 3.34 R
1961 2115 3.745975 TGAGTTGTAAATGGCTCTTCACG 59.254 43.478 0.00 0.00 0.00 4.35 R
2476 2632 1.133823 TCAAGGGAAGCAAGTGCAAGA 60.134 47.619 6.00 0.00 45.16 3.02 R
3413 3587 0.616679 TCTCACCCCGAACCCCTTAG 60.617 60.000 0.00 0.00 0.00 2.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.738521 CGACCACCGCTGACCTTG 60.739 66.667 0.00 0.00 0.00 3.61
19 20 3.050275 GACCACCGCTGACCTTGC 61.050 66.667 0.00 0.00 0.00 4.01
20 21 3.825160 GACCACCGCTGACCTTGCA 62.825 63.158 0.00 0.00 0.00 4.08
21 22 3.357079 CCACCGCTGACCTTGCAC 61.357 66.667 0.00 0.00 0.00 4.57
22 23 3.357079 CACCGCTGACCTTGCACC 61.357 66.667 0.00 0.00 0.00 5.01
23 24 4.643387 ACCGCTGACCTTGCACCC 62.643 66.667 0.00 0.00 0.00 4.61
39 40 4.559063 CCGGCCAGCCCAGATCTG 62.559 72.222 16.24 16.24 0.00 2.90
55 56 3.392228 TGGCACAGCTCGAATCCT 58.608 55.556 0.00 0.00 0.00 3.24
56 57 1.219124 TGGCACAGCTCGAATCCTC 59.781 57.895 0.00 0.00 0.00 3.71
57 58 1.522580 GGCACAGCTCGAATCCTCC 60.523 63.158 0.00 0.00 0.00 4.30
58 59 1.219124 GCACAGCTCGAATCCTCCA 59.781 57.895 0.00 0.00 0.00 3.86
59 60 0.179062 GCACAGCTCGAATCCTCCAT 60.179 55.000 0.00 0.00 0.00 3.41
60 61 1.579698 CACAGCTCGAATCCTCCATG 58.420 55.000 0.00 0.00 0.00 3.66
61 62 1.137675 CACAGCTCGAATCCTCCATGA 59.862 52.381 0.00 0.00 0.00 3.07
62 63 1.137872 ACAGCTCGAATCCTCCATGAC 59.862 52.381 0.00 0.00 0.00 3.06
63 64 0.755686 AGCTCGAATCCTCCATGACC 59.244 55.000 0.00 0.00 0.00 4.02
64 65 0.465705 GCTCGAATCCTCCATGACCA 59.534 55.000 0.00 0.00 0.00 4.02
65 66 1.539929 GCTCGAATCCTCCATGACCAG 60.540 57.143 0.00 0.00 0.00 4.00
66 67 1.069823 CTCGAATCCTCCATGACCAGG 59.930 57.143 0.00 0.00 0.00 4.45
67 68 0.107456 CGAATCCTCCATGACCAGGG 59.893 60.000 0.00 0.00 0.00 4.45
68 69 0.179006 GAATCCTCCATGACCAGGGC 60.179 60.000 0.00 0.00 31.15 5.19
69 70 1.987807 AATCCTCCATGACCAGGGCG 61.988 60.000 0.00 0.00 31.15 6.13
70 71 4.864334 CCTCCATGACCAGGGCGC 62.864 72.222 0.00 0.00 31.15 6.53
71 72 4.864334 CTCCATGACCAGGGCGCC 62.864 72.222 21.18 21.18 31.15 6.53
94 95 3.512516 GCCTGACCTGCGCCATTC 61.513 66.667 4.18 0.00 0.00 2.67
95 96 2.825836 CCTGACCTGCGCCATTCC 60.826 66.667 4.18 0.00 0.00 3.01
96 97 2.046023 CTGACCTGCGCCATTCCA 60.046 61.111 4.18 0.00 0.00 3.53
97 98 2.359850 TGACCTGCGCCATTCCAC 60.360 61.111 4.18 0.00 0.00 4.02
98 99 3.499737 GACCTGCGCCATTCCACG 61.500 66.667 4.18 0.00 0.00 4.94
105 106 3.799755 GCCATTCCACGCCGTGTC 61.800 66.667 16.99 0.00 0.00 3.67
106 107 3.487202 CCATTCCACGCCGTGTCG 61.487 66.667 16.99 1.47 0.00 4.35
107 108 4.147322 CATTCCACGCCGTGTCGC 62.147 66.667 16.99 0.00 0.00 5.19
117 118 4.764336 CGTGTCGCGACCGCCTAA 62.764 66.667 34.34 13.76 44.77 2.69
118 119 3.177249 GTGTCGCGACCGCCTAAC 61.177 66.667 34.34 21.35 37.98 2.34
119 120 4.764336 TGTCGCGACCGCCTAACG 62.764 66.667 34.34 0.00 43.15 3.18
130 131 3.688553 GCCTAACGAGCTATGCCTT 57.311 52.632 0.00 0.00 0.00 4.35
131 132 1.503294 GCCTAACGAGCTATGCCTTC 58.497 55.000 0.00 0.00 0.00 3.46
132 133 1.874320 GCCTAACGAGCTATGCCTTCC 60.874 57.143 0.00 0.00 0.00 3.46
133 134 1.270358 CCTAACGAGCTATGCCTTCCC 60.270 57.143 0.00 0.00 0.00 3.97
134 135 0.387929 TAACGAGCTATGCCTTCCCG 59.612 55.000 0.00 0.00 0.00 5.14
135 136 2.663188 CGAGCTATGCCTTCCCGC 60.663 66.667 0.00 0.00 0.00 6.13
136 137 2.825264 GAGCTATGCCTTCCCGCT 59.175 61.111 0.00 0.00 0.00 5.52
137 138 1.301322 GAGCTATGCCTTCCCGCTC 60.301 63.158 0.00 0.00 40.07 5.03
138 139 1.753368 GAGCTATGCCTTCCCGCTCT 61.753 60.000 0.00 0.00 42.72 4.09
139 140 1.596477 GCTATGCCTTCCCGCTCTG 60.596 63.158 0.00 0.00 0.00 3.35
140 141 1.596477 CTATGCCTTCCCGCTCTGC 60.596 63.158 0.00 0.00 0.00 4.26
141 142 3.106986 TATGCCTTCCCGCTCTGCC 62.107 63.158 0.00 0.00 0.00 4.85
150 151 4.880537 CGCTCTGCCGCCTACCTG 62.881 72.222 0.00 0.00 0.00 4.00
580 581 4.179599 GGGAGGGAGAGGGGAGGG 62.180 77.778 0.00 0.00 0.00 4.30
581 582 4.179599 GGAGGGAGAGGGGAGGGG 62.180 77.778 0.00 0.00 0.00 4.79
582 583 3.036959 GAGGGAGAGGGGAGGGGA 61.037 72.222 0.00 0.00 0.00 4.81
583 584 3.039526 AGGGAGAGGGGAGGGGAG 61.040 72.222 0.00 0.00 0.00 4.30
584 585 4.179599 GGGAGAGGGGAGGGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
585 586 3.036959 GGAGAGGGGAGGGGAGGA 61.037 72.222 0.00 0.00 0.00 3.71
586 587 2.284151 GAGAGGGGAGGGGAGGAC 59.716 72.222 0.00 0.00 0.00 3.85
587 588 3.742248 GAGAGGGGAGGGGAGGACG 62.742 73.684 0.00 0.00 0.00 4.79
588 589 3.752167 GAGGGGAGGGGAGGACGA 61.752 72.222 0.00 0.00 0.00 4.20
589 590 3.742248 GAGGGGAGGGGAGGACGAG 62.742 73.684 0.00 0.00 0.00 4.18
590 591 4.862823 GGGGAGGGGAGGACGAGG 62.863 77.778 0.00 0.00 0.00 4.63
591 592 4.077180 GGGAGGGGAGGACGAGGT 62.077 72.222 0.00 0.00 0.00 3.85
592 593 2.760385 GGAGGGGAGGACGAGGTG 60.760 72.222 0.00 0.00 0.00 4.00
593 594 2.037527 GAGGGGAGGACGAGGTGT 59.962 66.667 0.00 0.00 0.00 4.16
594 595 2.283966 AGGGGAGGACGAGGTGTG 60.284 66.667 0.00 0.00 0.00 3.82
595 596 3.391382 GGGGAGGACGAGGTGTGG 61.391 72.222 0.00 0.00 0.00 4.17
596 597 4.083862 GGGAGGACGAGGTGTGGC 62.084 72.222 0.00 0.00 0.00 5.01
597 598 4.436998 GGAGGACGAGGTGTGGCG 62.437 72.222 0.00 0.00 0.00 5.69
598 599 4.436998 GAGGACGAGGTGTGGCGG 62.437 72.222 0.00 0.00 0.00 6.13
1257 1399 1.605712 CCCTCGCATCCGTAGATTTCC 60.606 57.143 0.00 0.00 35.54 3.13
1373 1527 6.149308 TGTGCCTAACTGTTGACTATTGATTG 59.851 38.462 2.69 0.00 0.00 2.67
1418 1572 1.793258 CGGATCAGATCTGTGGATGC 58.207 55.000 21.92 12.56 31.46 3.91
1481 1635 2.819608 GTTTATCTGTTGGCTGGCTTGA 59.180 45.455 2.00 0.00 0.00 3.02
1491 1645 2.428171 TGGCTGGCTTGATAATTTGAGC 59.572 45.455 2.00 0.00 0.00 4.26
1514 1668 2.028203 ACTTGTGCTTGCAAACACCTTT 60.028 40.909 25.78 10.18 35.90 3.11
1554 1708 6.301169 GGCTATACCTGCCTAGTTCATAAT 57.699 41.667 0.00 0.00 46.38 1.28
1611 1765 2.352030 CCTGTATGTGTTTGCTGGCTTG 60.352 50.000 0.00 0.00 0.00 4.01
1619 1773 2.137523 GTTTGCTGGCTTGACAATTGG 58.862 47.619 10.83 0.00 0.00 3.16
1663 1817 2.022195 CTTGAGATGAATGGGCAGTGG 58.978 52.381 0.00 0.00 0.00 4.00
1703 1857 7.286087 AGTTCATAATGAAATGGATTGCTAGCA 59.714 33.333 14.93 14.93 38.22 3.49
1833 1987 5.766150 TGTTGACAAAACTTGGTCATAGG 57.234 39.130 0.52 0.00 43.01 2.57
1895 2049 8.950210 CATAGCATATTCCCATTGTTAGTAAGG 58.050 37.037 0.00 0.00 0.00 2.69
1950 2104 9.291664 CTCAAATAGCAGTACTTGTAGTTCTAC 57.708 37.037 0.00 3.33 0.00 2.59
1961 2115 5.924825 ACTTGTAGTTCTACGAATTCCACAC 59.075 40.000 0.00 0.00 0.00 3.82
1978 2132 2.805671 CACACGTGAAGAGCCATTTACA 59.194 45.455 25.01 0.00 0.00 2.41
2089 2243 5.902613 TTGTTCTTGCTGGAGGATTAATG 57.097 39.130 0.00 0.00 0.00 1.90
2164 2320 7.255942 GCTGTTTATTGATGCCTAAATATGGGT 60.256 37.037 0.00 0.00 0.00 4.51
2476 2632 3.441572 GCATGTCAGCAAGTAAGGATGTT 59.558 43.478 0.00 0.00 0.00 2.71
3081 3240 7.496346 TGTACTGATTTTCTGAGACCCTATT 57.504 36.000 0.00 0.00 0.00 1.73
3096 3255 7.016268 TGAGACCCTATTGGAAGGATATTGTAC 59.984 40.741 0.00 0.00 39.15 2.90
3109 3268 5.726793 AGGATATTGTACACCTCTTCTGGTT 59.273 40.000 0.00 0.00 38.45 3.67
3159 3325 7.473027 AAGCAAACATTCTTCATCTTTTGTG 57.527 32.000 0.00 0.00 0.00 3.33
3161 3327 6.698766 AGCAAACATTCTTCATCTTTTGTGTC 59.301 34.615 0.00 0.00 0.00 3.67
3183 3353 8.076178 GTGTCTAACAATGTTATTCAAGTGCTT 58.924 33.333 6.27 0.00 0.00 3.91
3200 3374 3.670055 GTGCTTGAATGTTGTATGTGTGC 59.330 43.478 0.00 0.00 0.00 4.57
3218 3392 4.816925 GTGTGCTCTAACTTCAGGAACTTT 59.183 41.667 0.00 0.00 34.60 2.66
3253 3427 5.847111 AATGATCCTTGACATTGTGATGG 57.153 39.130 0.00 0.00 37.60 3.51
3272 3446 1.520787 GCTGATGCTGCAATTGGCC 60.521 57.895 6.36 0.00 43.89 5.36
3289 3463 3.264897 CGCTGACGGTATGCCTGC 61.265 66.667 0.00 0.00 34.97 4.85
3313 3487 1.229082 AGGCAAGGTAGTCCGACCA 60.229 57.895 0.00 0.00 42.47 4.02
3347 3521 5.270812 GCTTTAATGAGCGTTCTATAGGC 57.729 43.478 0.00 0.00 37.91 3.93
3365 3539 4.383931 AGGCTATCTATGACCGGACTTA 57.616 45.455 9.46 3.54 0.00 2.24
3374 3548 1.626321 TGACCGGACTTAGCAAATCCA 59.374 47.619 9.46 0.00 32.35 3.41
3376 3550 1.628846 ACCGGACTTAGCAAATCCACT 59.371 47.619 9.46 0.00 32.35 4.00
3378 3552 2.280628 CGGACTTAGCAAATCCACTCC 58.719 52.381 0.00 0.00 32.35 3.85
3380 3554 2.239907 GGACTTAGCAAATCCACTCCCT 59.760 50.000 0.00 0.00 32.35 4.20
3381 3555 3.454812 GGACTTAGCAAATCCACTCCCTA 59.545 47.826 0.00 0.00 32.35 3.53
3383 3557 5.104259 ACTTAGCAAATCCACTCCCTAAG 57.896 43.478 0.00 0.00 38.31 2.18
3389 3563 1.512735 ATCCACTCCCTAAGGCCTTC 58.487 55.000 24.49 0.00 0.00 3.46
3408 3582 6.196079 CCTTCTTTGGCACTATAGTTTTCC 57.804 41.667 1.56 5.71 0.00 3.13
3409 3583 5.125578 CCTTCTTTGGCACTATAGTTTTCCC 59.874 44.000 1.56 2.47 0.00 3.97
3410 3584 5.249780 TCTTTGGCACTATAGTTTTCCCA 57.750 39.130 1.56 5.07 0.00 4.37
3411 3585 5.253330 TCTTTGGCACTATAGTTTTCCCAG 58.747 41.667 1.56 4.59 0.00 4.45
3412 3586 2.999331 TGGCACTATAGTTTTCCCAGC 58.001 47.619 1.56 1.53 0.00 4.85
3413 3587 2.298610 GGCACTATAGTTTTCCCAGCC 58.701 52.381 11.17 11.17 0.00 4.85
3414 3588 2.092375 GGCACTATAGTTTTCCCAGCCT 60.092 50.000 16.86 0.00 36.72 4.58
3415 3589 3.135895 GGCACTATAGTTTTCCCAGCCTA 59.864 47.826 16.86 0.00 36.72 3.93
3416 3590 4.384868 GGCACTATAGTTTTCCCAGCCTAA 60.385 45.833 16.86 0.00 36.72 2.69
3417 3591 4.816925 GCACTATAGTTTTCCCAGCCTAAG 59.183 45.833 1.56 0.00 0.00 2.18
3418 3592 5.368989 CACTATAGTTTTCCCAGCCTAAGG 58.631 45.833 1.56 0.00 0.00 2.69
3420 3594 0.704664 AGTTTTCCCAGCCTAAGGGG 59.295 55.000 0.00 0.00 46.77 4.79
3421 3595 0.408309 GTTTTCCCAGCCTAAGGGGT 59.592 55.000 0.00 0.00 46.77 4.95
3422 3596 1.163408 TTTTCCCAGCCTAAGGGGTT 58.837 50.000 0.00 0.00 46.77 4.11
3423 3597 0.702316 TTTCCCAGCCTAAGGGGTTC 59.298 55.000 0.00 0.00 46.77 3.62
3424 3598 1.559065 TTCCCAGCCTAAGGGGTTCG 61.559 60.000 0.00 0.00 46.77 3.95
3425 3599 2.590092 CCAGCCTAAGGGGTTCGG 59.410 66.667 0.00 0.00 42.03 4.30
3426 3600 2.590092 CAGCCTAAGGGGTTCGGG 59.410 66.667 0.00 0.00 42.03 5.14
3427 3601 2.691252 AGCCTAAGGGGTTCGGGG 60.691 66.667 0.00 0.00 40.98 5.73
3428 3602 3.013327 GCCTAAGGGGTTCGGGGT 61.013 66.667 0.00 0.00 37.43 4.95
3429 3603 2.995547 CCTAAGGGGTTCGGGGTG 59.004 66.667 0.00 0.00 0.00 4.61
3430 3604 1.614226 CCTAAGGGGTTCGGGGTGA 60.614 63.158 0.00 0.00 0.00 4.02
3431 3605 1.623542 CCTAAGGGGTTCGGGGTGAG 61.624 65.000 0.00 0.00 0.00 3.51
3432 3606 0.616679 CTAAGGGGTTCGGGGTGAGA 60.617 60.000 0.00 0.00 0.00 3.27
3433 3607 0.616679 TAAGGGGTTCGGGGTGAGAG 60.617 60.000 0.00 0.00 0.00 3.20
3434 3608 2.606826 GGGGTTCGGGGTGAGAGT 60.607 66.667 0.00 0.00 0.00 3.24
3435 3609 2.222013 GGGGTTCGGGGTGAGAGTT 61.222 63.158 0.00 0.00 0.00 3.01
3436 3610 1.759236 GGGTTCGGGGTGAGAGTTT 59.241 57.895 0.00 0.00 0.00 2.66
3437 3611 0.109913 GGGTTCGGGGTGAGAGTTTT 59.890 55.000 0.00 0.00 0.00 2.43
3438 3612 1.235724 GGTTCGGGGTGAGAGTTTTG 58.764 55.000 0.00 0.00 0.00 2.44
3439 3613 1.235724 GTTCGGGGTGAGAGTTTTGG 58.764 55.000 0.00 0.00 0.00 3.28
3440 3614 0.536460 TTCGGGGTGAGAGTTTTGGC 60.536 55.000 0.00 0.00 0.00 4.52
3441 3615 1.228124 CGGGGTGAGAGTTTTGGCA 60.228 57.895 0.00 0.00 0.00 4.92
3442 3616 1.515521 CGGGGTGAGAGTTTTGGCAC 61.516 60.000 0.00 0.00 0.00 5.01
3443 3617 0.178990 GGGGTGAGAGTTTTGGCACT 60.179 55.000 0.00 0.00 0.00 4.40
3444 3618 1.073284 GGGGTGAGAGTTTTGGCACTA 59.927 52.381 0.00 0.00 0.00 2.74
3445 3619 2.427506 GGGTGAGAGTTTTGGCACTAG 58.572 52.381 0.00 0.00 0.00 2.57
3446 3620 2.038557 GGGTGAGAGTTTTGGCACTAGA 59.961 50.000 0.00 0.00 0.00 2.43
3447 3621 3.330267 GGTGAGAGTTTTGGCACTAGAG 58.670 50.000 0.00 0.00 0.00 2.43
3448 3622 3.244249 GGTGAGAGTTTTGGCACTAGAGT 60.244 47.826 0.00 0.00 0.00 3.24
3449 3623 4.381411 GTGAGAGTTTTGGCACTAGAGTT 58.619 43.478 0.00 0.00 0.00 3.01
3450 3624 4.816925 GTGAGAGTTTTGGCACTAGAGTTT 59.183 41.667 0.00 0.00 0.00 2.66
3451 3625 5.297029 GTGAGAGTTTTGGCACTAGAGTTTT 59.703 40.000 0.00 0.00 0.00 2.43
3452 3626 5.527582 TGAGAGTTTTGGCACTAGAGTTTTC 59.472 40.000 0.00 0.00 0.00 2.29
3453 3627 4.822350 AGAGTTTTGGCACTAGAGTTTTCC 59.178 41.667 0.00 0.00 0.00 3.13
3454 3628 3.889538 AGTTTTGGCACTAGAGTTTTCCC 59.110 43.478 0.00 0.00 0.00 3.97
3455 3629 3.586470 TTTGGCACTAGAGTTTTCCCA 57.414 42.857 0.00 0.00 0.00 4.37
3456 3630 3.586470 TTGGCACTAGAGTTTTCCCAA 57.414 42.857 0.00 0.00 0.00 4.12
3457 3631 2.858745 TGGCACTAGAGTTTTCCCAAC 58.141 47.619 0.00 0.00 0.00 3.77
3458 3632 2.160205 GGCACTAGAGTTTTCCCAACC 58.840 52.381 0.00 0.00 0.00 3.77
3459 3633 2.224793 GGCACTAGAGTTTTCCCAACCT 60.225 50.000 0.00 0.00 0.00 3.50
3460 3634 3.008704 GGCACTAGAGTTTTCCCAACCTA 59.991 47.826 0.00 0.00 0.00 3.08
3461 3635 4.506095 GGCACTAGAGTTTTCCCAACCTAA 60.506 45.833 0.00 0.00 0.00 2.69
3462 3636 4.695928 GCACTAGAGTTTTCCCAACCTAAG 59.304 45.833 0.00 0.00 0.00 2.18
3463 3637 5.246307 CACTAGAGTTTTCCCAACCTAAGG 58.754 45.833 0.00 0.00 0.00 2.69
3465 3639 2.168496 GAGTTTTCCCAACCTAAGGGC 58.832 52.381 0.00 0.00 46.36 5.19
3466 3640 1.203137 AGTTTTCCCAACCTAAGGGCC 60.203 52.381 0.00 0.00 46.36 5.80
3467 3641 0.115547 TTTTCCCAACCTAAGGGCCC 59.884 55.000 16.46 16.46 46.36 5.80
3468 3642 2.144859 TTTCCCAACCTAAGGGCCCG 62.145 60.000 18.44 4.09 46.36 6.13
3469 3643 3.335729 CCCAACCTAAGGGCCCGT 61.336 66.667 18.44 17.51 39.96 5.28
3470 3644 2.271173 CCAACCTAAGGGCCCGTC 59.729 66.667 15.74 0.00 35.63 4.79
3471 3645 2.271173 CAACCTAAGGGCCCGTCC 59.729 66.667 15.74 0.00 35.63 4.79
3472 3646 2.204029 AACCTAAGGGCCCGTCCA 60.204 61.111 15.74 0.00 36.21 4.02
3473 3647 2.599757 AACCTAAGGGCCCGTCCAC 61.600 63.158 15.74 0.00 36.21 4.02
3474 3648 3.793888 CCTAAGGGCCCGTCCACC 61.794 72.222 15.74 0.00 36.21 4.61
3481 3655 3.793888 GCCCGTCCACCCCCTAAG 61.794 72.222 0.00 0.00 0.00 2.18
3482 3656 3.087906 CCCGTCCACCCCCTAAGG 61.088 72.222 0.00 0.00 0.00 2.69
3483 3657 3.793888 CCGTCCACCCCCTAAGGC 61.794 72.222 0.00 0.00 0.00 4.35
3484 3658 3.793888 CGTCCACCCCCTAAGGCC 61.794 72.222 0.00 0.00 0.00 5.19
3485 3659 2.286197 GTCCACCCCCTAAGGCCT 60.286 66.667 0.00 0.00 0.00 5.19
3486 3660 1.929088 GTCCACCCCCTAAGGCCTT 60.929 63.158 24.18 24.18 0.00 4.35
3487 3661 1.618447 TCCACCCCCTAAGGCCTTC 60.618 63.158 24.49 0.00 0.00 3.46
3488 3662 1.619669 CCACCCCCTAAGGCCTTCT 60.620 63.158 24.49 0.27 0.00 2.85
3489 3663 1.214992 CCACCCCCTAAGGCCTTCTT 61.215 60.000 24.49 0.00 39.40 2.52
3490 3664 0.704664 CACCCCCTAAGGCCTTCTTT 59.295 55.000 24.49 0.00 36.93 2.52
3491 3665 0.704664 ACCCCCTAAGGCCTTCTTTG 59.295 55.000 24.49 10.70 36.93 2.77
3492 3666 0.033109 CCCCCTAAGGCCTTCTTTGG 60.033 60.000 24.49 18.86 44.45 3.28
3506 3680 6.196079 CCTTCTTTGGCACTATAGTTTTCC 57.804 41.667 1.56 5.71 0.00 3.13
3507 3681 5.125578 CCTTCTTTGGCACTATAGTTTTCCC 59.874 44.000 1.56 2.47 0.00 3.97
3508 3682 5.249780 TCTTTGGCACTATAGTTTTCCCA 57.750 39.130 1.56 5.07 0.00 4.37
3509 3683 5.253330 TCTTTGGCACTATAGTTTTCCCAG 58.747 41.667 1.56 4.59 0.00 4.45
3510 3684 2.999331 TGGCACTATAGTTTTCCCAGC 58.001 47.619 1.56 1.53 0.00 4.85
3511 3685 2.298610 GGCACTATAGTTTTCCCAGCC 58.701 52.381 11.17 11.17 0.00 4.85
3512 3686 2.092375 GGCACTATAGTTTTCCCAGCCT 60.092 50.000 16.86 0.00 36.72 4.58
3513 3687 3.135895 GGCACTATAGTTTTCCCAGCCTA 59.864 47.826 16.86 0.00 36.72 3.93
3514 3688 4.384868 GGCACTATAGTTTTCCCAGCCTAA 60.385 45.833 16.86 0.00 36.72 2.69
3515 3689 4.816925 GCACTATAGTTTTCCCAGCCTAAG 59.183 45.833 1.56 0.00 0.00 2.18
3516 3690 5.368989 CACTATAGTTTTCCCAGCCTAAGG 58.631 45.833 1.56 0.00 0.00 2.69
3518 3692 0.704664 AGTTTTCCCAGCCTAAGGGG 59.295 55.000 0.00 0.00 46.77 4.79
3519 3693 0.408309 GTTTTCCCAGCCTAAGGGGT 59.592 55.000 0.00 0.00 46.77 4.95
3520 3694 1.163408 TTTTCCCAGCCTAAGGGGTT 58.837 50.000 0.00 0.00 46.77 4.11
3521 3695 0.702316 TTTCCCAGCCTAAGGGGTTC 59.298 55.000 0.00 0.00 46.77 3.62
3522 3696 1.559065 TTCCCAGCCTAAGGGGTTCG 61.559 60.000 0.00 0.00 46.77 3.95
3523 3697 2.590092 CCAGCCTAAGGGGTTCGG 59.410 66.667 0.00 0.00 42.03 4.30
3524 3698 2.590092 CAGCCTAAGGGGTTCGGG 59.410 66.667 0.00 0.00 42.03 5.14
3525 3699 2.691252 AGCCTAAGGGGTTCGGGG 60.691 66.667 0.00 0.00 40.98 5.73
3526 3700 3.013327 GCCTAAGGGGTTCGGGGT 61.013 66.667 0.00 0.00 37.43 4.95
3527 3701 2.995547 CCTAAGGGGTTCGGGGTG 59.004 66.667 0.00 0.00 0.00 4.61
3528 3702 1.614226 CCTAAGGGGTTCGGGGTGA 60.614 63.158 0.00 0.00 0.00 4.02
3529 3703 1.623542 CCTAAGGGGTTCGGGGTGAG 61.624 65.000 0.00 0.00 0.00 3.51
3530 3704 0.616679 CTAAGGGGTTCGGGGTGAGA 60.617 60.000 0.00 0.00 0.00 3.27
3531 3705 0.616679 TAAGGGGTTCGGGGTGAGAG 60.617 60.000 0.00 0.00 0.00 3.20
3532 3706 2.606826 GGGGTTCGGGGTGAGAGT 60.607 66.667 0.00 0.00 0.00 3.24
3533 3707 2.222013 GGGGTTCGGGGTGAGAGTT 61.222 63.158 0.00 0.00 0.00 3.01
3534 3708 1.759236 GGGTTCGGGGTGAGAGTTT 59.241 57.895 0.00 0.00 0.00 2.66
3535 3709 0.109913 GGGTTCGGGGTGAGAGTTTT 59.890 55.000 0.00 0.00 0.00 2.43
3536 3710 1.235724 GGTTCGGGGTGAGAGTTTTG 58.764 55.000 0.00 0.00 0.00 2.44
3537 3711 1.235724 GTTCGGGGTGAGAGTTTTGG 58.764 55.000 0.00 0.00 0.00 3.28
3538 3712 0.536460 TTCGGGGTGAGAGTTTTGGC 60.536 55.000 0.00 0.00 0.00 4.52
3539 3713 1.228124 CGGGGTGAGAGTTTTGGCA 60.228 57.895 0.00 0.00 0.00 4.92
3540 3714 1.515521 CGGGGTGAGAGTTTTGGCAC 61.516 60.000 0.00 0.00 0.00 5.01
3541 3715 0.178990 GGGGTGAGAGTTTTGGCACT 60.179 55.000 0.00 0.00 0.00 4.40
3542 3716 1.073284 GGGGTGAGAGTTTTGGCACTA 59.927 52.381 0.00 0.00 0.00 2.74
3543 3717 2.427506 GGGTGAGAGTTTTGGCACTAG 58.572 52.381 0.00 0.00 0.00 2.57
3544 3718 2.038557 GGGTGAGAGTTTTGGCACTAGA 59.961 50.000 0.00 0.00 0.00 2.43
3545 3719 3.330267 GGTGAGAGTTTTGGCACTAGAG 58.670 50.000 0.00 0.00 0.00 2.43
3546 3720 3.244249 GGTGAGAGTTTTGGCACTAGAGT 60.244 47.826 0.00 0.00 0.00 3.24
3547 3721 4.381411 GTGAGAGTTTTGGCACTAGAGTT 58.619 43.478 0.00 0.00 0.00 3.01
3548 3722 4.816925 GTGAGAGTTTTGGCACTAGAGTTT 59.183 41.667 0.00 0.00 0.00 2.66
3549 3723 5.297029 GTGAGAGTTTTGGCACTAGAGTTTT 59.703 40.000 0.00 0.00 0.00 2.43
3550 3724 5.527582 TGAGAGTTTTGGCACTAGAGTTTTC 59.472 40.000 0.00 0.00 0.00 2.29
3551 3725 4.822350 AGAGTTTTGGCACTAGAGTTTTCC 59.178 41.667 0.00 0.00 0.00 3.13
3552 3726 3.889538 AGTTTTGGCACTAGAGTTTTCCC 59.110 43.478 0.00 0.00 0.00 3.97
3553 3727 3.586470 TTTGGCACTAGAGTTTTCCCA 57.414 42.857 0.00 0.00 0.00 4.37
3554 3728 3.586470 TTGGCACTAGAGTTTTCCCAA 57.414 42.857 0.00 0.00 0.00 4.12
3555 3729 2.858745 TGGCACTAGAGTTTTCCCAAC 58.141 47.619 0.00 0.00 0.00 3.77
3556 3730 2.160205 GGCACTAGAGTTTTCCCAACC 58.840 52.381 0.00 0.00 0.00 3.77
3557 3731 2.224793 GGCACTAGAGTTTTCCCAACCT 60.225 50.000 0.00 0.00 0.00 3.50
3558 3732 3.008704 GGCACTAGAGTTTTCCCAACCTA 59.991 47.826 0.00 0.00 0.00 3.08
3559 3733 4.506095 GGCACTAGAGTTTTCCCAACCTAA 60.506 45.833 0.00 0.00 0.00 2.69
3560 3734 4.695928 GCACTAGAGTTTTCCCAACCTAAG 59.304 45.833 0.00 0.00 0.00 2.18
3561 3735 5.246307 CACTAGAGTTTTCCCAACCTAAGG 58.754 45.833 0.00 0.00 0.00 2.69
3563 3737 2.168496 GAGTTTTCCCAACCTAAGGGC 58.832 52.381 0.00 0.00 46.36 5.19
3564 3738 1.203137 AGTTTTCCCAACCTAAGGGCC 60.203 52.381 0.00 0.00 46.36 5.80
3565 3739 0.115547 TTTTCCCAACCTAAGGGCCC 59.884 55.000 16.46 16.46 46.36 5.80
3566 3740 2.144859 TTTCCCAACCTAAGGGCCCG 62.145 60.000 18.44 4.09 46.36 6.13
3567 3741 3.335729 CCCAACCTAAGGGCCCGT 61.336 66.667 18.44 17.51 39.96 5.28
3568 3742 2.761160 CCAACCTAAGGGCCCGTT 59.239 61.111 17.88 11.63 35.63 4.44
3569 3743 1.378119 CCAACCTAAGGGCCCGTTC 60.378 63.158 17.88 0.00 35.63 3.95
3570 3744 1.743995 CAACCTAAGGGCCCGTTCG 60.744 63.158 17.88 8.94 35.63 3.95
3571 3745 2.963101 AACCTAAGGGCCCGTTCGG 61.963 63.158 17.88 18.96 35.63 4.30
3572 3746 3.396570 CCTAAGGGCCCGTTCGGT 61.397 66.667 17.88 0.00 0.00 4.69
3573 3747 2.059786 CCTAAGGGCCCGTTCGGTA 61.060 63.158 17.88 0.00 0.00 4.02
3574 3748 1.405272 CCTAAGGGCCCGTTCGGTAT 61.405 60.000 17.88 0.00 0.00 2.73
3575 3749 1.331214 CTAAGGGCCCGTTCGGTATA 58.669 55.000 17.88 0.00 0.00 1.47
3576 3750 1.000171 CTAAGGGCCCGTTCGGTATAC 60.000 57.143 17.88 0.00 0.00 1.47
3577 3751 2.019897 AAGGGCCCGTTCGGTATACG 62.020 60.000 18.44 0.00 46.11 3.06
3586 3760 3.446799 CGTTCGGTATACGGGAATTTCA 58.553 45.455 10.23 0.00 44.45 2.69
3587 3761 3.488310 CGTTCGGTATACGGGAATTTCAG 59.512 47.826 10.23 0.00 44.45 3.02
3588 3762 4.685924 GTTCGGTATACGGGAATTTCAGA 58.314 43.478 10.23 0.00 44.45 3.27
3589 3763 4.579454 TCGGTATACGGGAATTTCAGAG 57.421 45.455 10.23 0.00 44.45 3.35
3590 3764 3.319972 TCGGTATACGGGAATTTCAGAGG 59.680 47.826 10.23 0.00 44.45 3.69
3591 3765 3.319972 CGGTATACGGGAATTTCAGAGGA 59.680 47.826 2.57 0.00 39.42 3.71
3592 3766 4.202182 CGGTATACGGGAATTTCAGAGGAA 60.202 45.833 2.57 0.00 39.42 3.36
3593 3767 5.055144 GGTATACGGGAATTTCAGAGGAAC 58.945 45.833 0.00 0.00 31.35 3.62
3594 3768 4.837093 ATACGGGAATTTCAGAGGAACA 57.163 40.909 0.00 0.00 31.35 3.18
3595 3769 3.721087 ACGGGAATTTCAGAGGAACAT 57.279 42.857 0.00 0.00 31.35 2.71
3596 3770 4.034285 ACGGGAATTTCAGAGGAACATT 57.966 40.909 0.00 0.00 31.35 2.71
3597 3771 4.407365 ACGGGAATTTCAGAGGAACATTT 58.593 39.130 0.00 0.00 31.35 2.32
3598 3772 4.218417 ACGGGAATTTCAGAGGAACATTTG 59.782 41.667 0.00 0.00 31.35 2.32
3599 3773 4.380867 CGGGAATTTCAGAGGAACATTTGG 60.381 45.833 0.00 0.00 31.35 3.28
3600 3774 4.772100 GGGAATTTCAGAGGAACATTTGGA 59.228 41.667 0.00 0.00 31.35 3.53
3601 3775 5.245977 GGGAATTTCAGAGGAACATTTGGAA 59.754 40.000 0.00 0.00 31.35 3.53
3602 3776 6.393171 GGAATTTCAGAGGAACATTTGGAAG 58.607 40.000 0.00 0.00 31.35 3.46
3603 3777 6.209391 GGAATTTCAGAGGAACATTTGGAAGA 59.791 38.462 0.00 0.00 31.35 2.87
3604 3778 7.093596 GGAATTTCAGAGGAACATTTGGAAGAT 60.094 37.037 0.00 0.00 31.35 2.40
3605 3779 7.787623 ATTTCAGAGGAACATTTGGAAGATT 57.212 32.000 0.00 0.00 31.35 2.40
3606 3780 8.884124 ATTTCAGAGGAACATTTGGAAGATTA 57.116 30.769 0.00 0.00 31.35 1.75
3607 3781 7.928307 TTCAGAGGAACATTTGGAAGATTAG 57.072 36.000 0.00 0.00 0.00 1.73
3608 3782 7.020827 TCAGAGGAACATTTGGAAGATTAGT 57.979 36.000 0.00 0.00 0.00 2.24
3609 3783 7.461749 TCAGAGGAACATTTGGAAGATTAGTT 58.538 34.615 0.00 0.00 0.00 2.24
3610 3784 7.944554 TCAGAGGAACATTTGGAAGATTAGTTT 59.055 33.333 0.00 0.00 0.00 2.66
3611 3785 8.239998 CAGAGGAACATTTGGAAGATTAGTTTC 58.760 37.037 0.00 0.00 0.00 2.78
3612 3786 7.394641 AGAGGAACATTTGGAAGATTAGTTTCC 59.605 37.037 0.00 0.00 43.56 3.13
3613 3787 6.151144 AGGAACATTTGGAAGATTAGTTTCCG 59.849 38.462 0.14 0.00 45.70 4.30
3614 3788 6.072119 GGAACATTTGGAAGATTAGTTTCCGT 60.072 38.462 0.14 0.00 45.70 4.69
3615 3789 7.120138 GGAACATTTGGAAGATTAGTTTCCGTA 59.880 37.037 0.14 0.00 45.70 4.02
3616 3790 7.611213 ACATTTGGAAGATTAGTTTCCGTAG 57.389 36.000 0.14 0.00 45.70 3.51
3635 3809 6.737254 CGTAGGAATTTTCGCCCATATTAT 57.263 37.500 0.00 0.00 0.00 1.28
3636 3810 6.542852 CGTAGGAATTTTCGCCCATATTATG 58.457 40.000 0.00 0.00 0.00 1.90
3637 3811 6.148811 CGTAGGAATTTTCGCCCATATTATGT 59.851 38.462 3.10 0.00 0.00 2.29
3638 3812 6.976934 AGGAATTTTCGCCCATATTATGTT 57.023 33.333 3.10 0.00 0.00 2.71
3639 3813 6.981722 AGGAATTTTCGCCCATATTATGTTC 58.018 36.000 3.10 0.00 0.00 3.18
3640 3814 5.856455 GGAATTTTCGCCCATATTATGTTCG 59.144 40.000 3.10 5.88 0.00 3.95
3641 3815 4.822036 TTTTCGCCCATATTATGTTCGG 57.178 40.909 12.03 4.73 0.00 4.30
3642 3816 3.478857 TTCGCCCATATTATGTTCGGT 57.521 42.857 12.03 0.00 0.00 4.69
3643 3817 3.478857 TCGCCCATATTATGTTCGGTT 57.521 42.857 12.03 0.00 0.00 4.44
3644 3818 3.811083 TCGCCCATATTATGTTCGGTTT 58.189 40.909 12.03 0.00 0.00 3.27
3645 3819 3.562141 TCGCCCATATTATGTTCGGTTTG 59.438 43.478 12.03 0.70 0.00 2.93
3646 3820 3.562141 CGCCCATATTATGTTCGGTTTGA 59.438 43.478 3.10 0.00 0.00 2.69
3647 3821 4.035792 CGCCCATATTATGTTCGGTTTGAA 59.964 41.667 3.10 0.00 0.00 2.69
3648 3822 5.519722 GCCCATATTATGTTCGGTTTGAAG 58.480 41.667 3.10 0.00 37.23 3.02
3649 3823 5.507315 GCCCATATTATGTTCGGTTTGAAGG 60.507 44.000 3.10 0.00 37.23 3.46
3650 3824 5.825679 CCCATATTATGTTCGGTTTGAAGGA 59.174 40.000 3.10 0.00 37.23 3.36
3651 3825 6.320164 CCCATATTATGTTCGGTTTGAAGGAA 59.680 38.462 3.10 0.00 37.23 3.36
3652 3826 7.014230 CCCATATTATGTTCGGTTTGAAGGAAT 59.986 37.037 3.10 0.00 37.23 3.01
3653 3827 8.076178 CCATATTATGTTCGGTTTGAAGGAATC 58.924 37.037 3.10 0.00 37.23 2.52
3654 3828 8.840321 CATATTATGTTCGGTTTGAAGGAATCT 58.160 33.333 0.00 0.00 37.23 2.40
3656 3830 7.843490 TTATGTTCGGTTTGAAGGAATCTAG 57.157 36.000 0.00 0.00 37.23 2.43
3657 3831 4.575885 TGTTCGGTTTGAAGGAATCTAGG 58.424 43.478 0.00 0.00 37.23 3.02
3658 3832 4.285003 TGTTCGGTTTGAAGGAATCTAGGA 59.715 41.667 0.00 0.00 37.23 2.94
3659 3833 5.045869 TGTTCGGTTTGAAGGAATCTAGGAT 60.046 40.000 0.00 0.00 37.23 3.24
3660 3834 5.023533 TCGGTTTGAAGGAATCTAGGATG 57.976 43.478 0.00 0.00 0.00 3.51
3661 3835 4.469945 TCGGTTTGAAGGAATCTAGGATGT 59.530 41.667 0.00 0.00 0.00 3.06
3662 3836 4.572389 CGGTTTGAAGGAATCTAGGATGTG 59.428 45.833 0.00 0.00 0.00 3.21
3663 3837 4.336713 GGTTTGAAGGAATCTAGGATGTGC 59.663 45.833 0.00 0.00 0.00 4.57
3664 3838 4.842531 TTGAAGGAATCTAGGATGTGCA 57.157 40.909 0.00 0.00 0.00 4.57
3665 3839 5.378230 TTGAAGGAATCTAGGATGTGCAT 57.622 39.130 0.00 0.00 0.00 3.96
3666 3840 5.378230 TGAAGGAATCTAGGATGTGCATT 57.622 39.130 0.00 0.00 0.00 3.56
3667 3841 5.371526 TGAAGGAATCTAGGATGTGCATTC 58.628 41.667 0.00 0.00 0.00 2.67
3668 3842 4.363991 AGGAATCTAGGATGTGCATTCC 57.636 45.455 9.97 9.97 41.98 3.01
3669 3843 3.718434 AGGAATCTAGGATGTGCATTCCA 59.282 43.478 17.92 0.00 43.46 3.53
3670 3844 3.817647 GGAATCTAGGATGTGCATTCCAC 59.182 47.826 17.92 0.00 41.50 4.02
3671 3845 4.445448 GGAATCTAGGATGTGCATTCCACT 60.445 45.833 17.92 4.25 44.92 4.00
3672 3846 3.548745 TCTAGGATGTGCATTCCACTG 57.451 47.619 17.92 9.22 44.92 3.66
3673 3847 2.171237 TCTAGGATGTGCATTCCACTGG 59.829 50.000 17.92 4.03 44.92 4.00
3674 3848 0.994247 AGGATGTGCATTCCACTGGA 59.006 50.000 17.92 0.00 44.92 3.86
3675 3849 1.355381 AGGATGTGCATTCCACTGGAA 59.645 47.619 13.08 13.08 46.39 3.53
3676 3850 2.170166 GGATGTGCATTCCACTGGAAA 58.830 47.619 14.66 0.00 45.41 3.13
3677 3851 2.165030 GGATGTGCATTCCACTGGAAAG 59.835 50.000 14.66 11.36 45.41 2.62
3678 3852 2.363306 TGTGCATTCCACTGGAAAGT 57.637 45.000 14.66 0.00 45.41 2.66
3679 3853 2.229792 TGTGCATTCCACTGGAAAGTC 58.770 47.619 14.66 7.39 45.41 3.01
3680 3854 2.229792 GTGCATTCCACTGGAAAGTCA 58.770 47.619 14.66 9.64 45.41 3.41
3681 3855 2.821969 GTGCATTCCACTGGAAAGTCAT 59.178 45.455 14.66 0.00 45.41 3.06
3682 3856 2.821378 TGCATTCCACTGGAAAGTCATG 59.179 45.455 14.66 8.98 45.41 3.07
3683 3857 2.416431 GCATTCCACTGGAAAGTCATGC 60.416 50.000 14.66 14.65 45.41 4.06
3684 3858 2.957402 TTCCACTGGAAAGTCATGCT 57.043 45.000 8.15 0.00 38.93 3.79
3685 3859 4.264253 CATTCCACTGGAAAGTCATGCTA 58.736 43.478 14.66 0.00 45.41 3.49
3686 3860 3.616956 TCCACTGGAAAGTCATGCTAG 57.383 47.619 0.00 0.00 0.00 3.42
3687 3861 2.012673 CCACTGGAAAGTCATGCTAGC 58.987 52.381 8.10 8.10 0.00 3.42
3688 3862 2.355513 CCACTGGAAAGTCATGCTAGCT 60.356 50.000 17.23 0.00 0.00 3.32
3689 3863 3.341823 CACTGGAAAGTCATGCTAGCTT 58.658 45.455 17.23 6.81 0.00 3.74
3690 3864 3.126514 CACTGGAAAGTCATGCTAGCTTG 59.873 47.826 21.48 21.48 0.00 4.01
3691 3865 3.244700 ACTGGAAAGTCATGCTAGCTTGT 60.245 43.478 25.00 10.15 0.00 3.16
3692 3866 4.020218 ACTGGAAAGTCATGCTAGCTTGTA 60.020 41.667 25.00 12.65 0.00 2.41
3693 3867 4.253685 TGGAAAGTCATGCTAGCTTGTAC 58.746 43.478 25.00 20.84 0.00 2.90
3694 3868 4.020218 TGGAAAGTCATGCTAGCTTGTACT 60.020 41.667 25.00 22.24 0.00 2.73
3695 3869 4.938226 GGAAAGTCATGCTAGCTTGTACTT 59.062 41.667 25.44 25.44 0.00 2.24
3696 3870 5.412904 GGAAAGTCATGCTAGCTTGTACTTT 59.587 40.000 32.21 32.21 36.09 2.66
3697 3871 6.072452 GGAAAGTCATGCTAGCTTGTACTTTT 60.072 38.462 32.20 24.88 35.07 2.27
3698 3872 6.487689 AAGTCATGCTAGCTTGTACTTTTC 57.512 37.500 25.44 13.80 0.00 2.29
3699 3873 5.551233 AGTCATGCTAGCTTGTACTTTTCA 58.449 37.500 25.00 5.58 0.00 2.69
3700 3874 5.409826 AGTCATGCTAGCTTGTACTTTTCAC 59.590 40.000 25.00 15.40 0.00 3.18
3701 3875 5.179368 GTCATGCTAGCTTGTACTTTTCACA 59.821 40.000 25.00 4.32 0.00 3.58
3702 3876 5.409520 TCATGCTAGCTTGTACTTTTCACAG 59.590 40.000 25.00 0.96 0.00 3.66
3703 3877 4.065088 TGCTAGCTTGTACTTTTCACAGG 58.935 43.478 17.23 0.00 0.00 4.00
3704 3878 4.202315 TGCTAGCTTGTACTTTTCACAGGA 60.202 41.667 17.23 0.00 0.00 3.86
3705 3879 4.755123 GCTAGCTTGTACTTTTCACAGGAA 59.245 41.667 7.70 0.00 0.00 3.36
3706 3880 5.238650 GCTAGCTTGTACTTTTCACAGGAAA 59.761 40.000 7.70 0.00 41.13 3.13
3707 3881 6.072452 GCTAGCTTGTACTTTTCACAGGAAAT 60.072 38.462 7.70 0.00 42.31 2.17
3708 3882 6.715347 AGCTTGTACTTTTCACAGGAAATT 57.285 33.333 0.00 0.00 42.31 1.82
3709 3883 7.817418 AGCTTGTACTTTTCACAGGAAATTA 57.183 32.000 0.00 0.00 42.31 1.40
3710 3884 8.232913 AGCTTGTACTTTTCACAGGAAATTAA 57.767 30.769 0.00 0.00 42.31 1.40
3711 3885 8.691797 AGCTTGTACTTTTCACAGGAAATTAAA 58.308 29.630 0.00 0.00 42.31 1.52
3712 3886 9.308318 GCTTGTACTTTTCACAGGAAATTAAAA 57.692 29.630 0.00 0.00 42.31 1.52
3716 3890 9.459640 GTACTTTTCACAGGAAATTAAAACTCC 57.540 33.333 0.00 0.00 42.31 3.85
3717 3891 8.073467 ACTTTTCACAGGAAATTAAAACTCCA 57.927 30.769 4.27 0.00 42.31 3.86
3718 3892 8.197439 ACTTTTCACAGGAAATTAAAACTCCAG 58.803 33.333 4.27 0.00 42.31 3.86
3719 3893 7.654022 TTTCACAGGAAATTAAAACTCCAGT 57.346 32.000 4.27 0.12 38.07 4.00
3720 3894 8.754991 TTTCACAGGAAATTAAAACTCCAGTA 57.245 30.769 4.27 0.00 38.07 2.74
3721 3895 7.979444 TCACAGGAAATTAAAACTCCAGTAG 57.021 36.000 4.27 0.00 28.80 2.57
3722 3896 7.741785 TCACAGGAAATTAAAACTCCAGTAGA 58.258 34.615 4.27 1.63 28.80 2.59
3723 3897 8.215050 TCACAGGAAATTAAAACTCCAGTAGAA 58.785 33.333 4.27 0.00 28.80 2.10
3724 3898 8.290325 CACAGGAAATTAAAACTCCAGTAGAAC 58.710 37.037 4.27 0.00 28.80 3.01
3725 3899 8.218488 ACAGGAAATTAAAACTCCAGTAGAACT 58.782 33.333 4.27 0.00 28.11 3.01
3726 3900 9.067986 CAGGAAATTAAAACTCCAGTAGAACTT 57.932 33.333 4.27 0.00 0.00 2.66
3727 3901 9.286170 AGGAAATTAAAACTCCAGTAGAACTTC 57.714 33.333 4.27 0.00 0.00 3.01
3728 3902 8.228464 GGAAATTAAAACTCCAGTAGAACTTCG 58.772 37.037 0.00 0.00 0.00 3.79
3729 3903 8.672823 AAATTAAAACTCCAGTAGAACTTCGT 57.327 30.769 0.00 0.00 0.00 3.85
3730 3904 7.653767 ATTAAAACTCCAGTAGAACTTCGTG 57.346 36.000 0.00 0.00 0.00 4.35
3731 3905 4.667519 AAACTCCAGTAGAACTTCGTGT 57.332 40.909 0.00 0.00 0.00 4.49
3732 3906 4.667519 AACTCCAGTAGAACTTCGTGTT 57.332 40.909 0.00 0.00 42.38 3.32
3739 3913 4.043168 AACTTCGTGTTCTGGCGG 57.957 55.556 0.00 0.00 32.63 6.13
3740 3914 1.444250 AACTTCGTGTTCTGGCGGA 59.556 52.632 0.00 0.00 32.63 5.54
3741 3915 0.600255 AACTTCGTGTTCTGGCGGAG 60.600 55.000 0.00 0.00 39.45 4.63
3742 3916 1.738099 CTTCGTGTTCTGGCGGAGG 60.738 63.158 0.00 0.00 30.59 4.30
3760 3934 3.838271 CCCGAGGCTAAGCGCAGA 61.838 66.667 11.47 0.00 41.67 4.26
3761 3935 2.279120 CCGAGGCTAAGCGCAGAG 60.279 66.667 11.47 7.26 41.67 3.35
3774 3948 4.831698 CAGAGCTGCAGTCTAGCC 57.168 61.111 16.64 0.00 42.07 3.93
3775 3949 1.226916 CAGAGCTGCAGTCTAGCCG 60.227 63.158 16.64 1.93 42.07 5.52
3776 3950 1.379176 AGAGCTGCAGTCTAGCCGA 60.379 57.895 16.64 0.00 42.07 5.54
3777 3951 0.967887 AGAGCTGCAGTCTAGCCGAA 60.968 55.000 16.64 0.00 42.07 4.30
3778 3952 0.103937 GAGCTGCAGTCTAGCCGAAT 59.896 55.000 16.64 0.00 42.07 3.34
3779 3953 1.338337 GAGCTGCAGTCTAGCCGAATA 59.662 52.381 16.64 0.00 42.07 1.75
3780 3954 1.757118 AGCTGCAGTCTAGCCGAATAA 59.243 47.619 16.64 0.00 42.07 1.40
3781 3955 2.168521 AGCTGCAGTCTAGCCGAATAAA 59.831 45.455 16.64 0.00 42.07 1.40
3782 3956 2.285488 GCTGCAGTCTAGCCGAATAAAC 59.715 50.000 16.64 0.00 35.15 2.01
3783 3957 3.521560 CTGCAGTCTAGCCGAATAAACA 58.478 45.455 5.25 0.00 0.00 2.83
3784 3958 3.521560 TGCAGTCTAGCCGAATAAACAG 58.478 45.455 0.00 0.00 0.00 3.16
3785 3959 3.056107 TGCAGTCTAGCCGAATAAACAGT 60.056 43.478 0.00 0.00 0.00 3.55
3786 3960 3.307242 GCAGTCTAGCCGAATAAACAGTG 59.693 47.826 0.00 0.00 0.00 3.66
3787 3961 3.307242 CAGTCTAGCCGAATAAACAGTGC 59.693 47.826 0.00 0.00 0.00 4.40
3788 3962 3.056107 AGTCTAGCCGAATAAACAGTGCA 60.056 43.478 0.00 0.00 0.00 4.57
3789 3963 3.307242 GTCTAGCCGAATAAACAGTGCAG 59.693 47.826 0.00 0.00 0.00 4.41
3790 3964 0.804989 AGCCGAATAAACAGTGCAGC 59.195 50.000 0.00 0.00 0.00 5.25
3791 3965 0.804989 GCCGAATAAACAGTGCAGCT 59.195 50.000 0.00 0.00 0.00 4.24
3800 3974 2.453843 CAGTGCAGCTGTACAGAGC 58.546 57.895 32.33 25.96 40.27 4.09
3808 3982 2.276472 GCTGTACAGAGCTGTGAGAG 57.724 55.000 27.08 10.01 44.63 3.20
3809 3983 1.135141 GCTGTACAGAGCTGTGAGAGG 60.135 57.143 27.08 6.13 44.63 3.69
3810 3984 0.891373 TGTACAGAGCTGTGAGAGGC 59.109 55.000 19.13 3.27 44.63 4.70
3811 3985 0.174617 GTACAGAGCTGTGAGAGGCC 59.825 60.000 19.13 0.00 44.63 5.19
3812 3986 0.972983 TACAGAGCTGTGAGAGGCCC 60.973 60.000 19.13 0.00 44.63 5.80
3813 3987 2.686835 AGAGCTGTGAGAGGCCCC 60.687 66.667 0.00 0.00 0.00 5.80
3814 3988 4.154347 GAGCTGTGAGAGGCCCCG 62.154 72.222 0.00 0.00 0.00 5.73
3816 3990 4.459089 GCTGTGAGAGGCCCCGTC 62.459 72.222 0.00 0.00 0.00 4.79
3817 3991 2.997315 CTGTGAGAGGCCCCGTCA 60.997 66.667 0.00 0.00 0.00 4.35
3818 3992 2.525629 TGTGAGAGGCCCCGTCAA 60.526 61.111 0.00 0.00 0.00 3.18
3819 3993 2.047179 GTGAGAGGCCCCGTCAAC 60.047 66.667 0.00 0.00 0.00 3.18
3820 3994 3.319198 TGAGAGGCCCCGTCAACC 61.319 66.667 0.00 0.00 0.00 3.77
3821 3995 3.003763 GAGAGGCCCCGTCAACCT 61.004 66.667 0.00 0.00 36.19 3.50
3822 3996 2.529389 AGAGGCCCCGTCAACCTT 60.529 61.111 0.00 0.00 32.67 3.50
3823 3997 2.359975 GAGGCCCCGTCAACCTTG 60.360 66.667 0.00 0.00 32.67 3.61
3824 3998 3.175710 AGGCCCCGTCAACCTTGT 61.176 61.111 0.00 0.00 0.00 3.16
3825 3999 2.203437 GGCCCCGTCAACCTTGTT 60.203 61.111 0.00 0.00 0.00 2.83
3826 4000 2.561037 GGCCCCGTCAACCTTGTTG 61.561 63.158 0.00 0.55 0.00 3.33
3827 4001 1.826487 GCCCCGTCAACCTTGTTGT 60.826 57.895 6.83 0.00 0.00 3.32
3828 4002 2.029743 CCCCGTCAACCTTGTTGTG 58.970 57.895 6.83 1.98 0.00 3.33
3829 4003 0.464735 CCCCGTCAACCTTGTTGTGA 60.465 55.000 6.83 0.00 0.00 3.58
3830 4004 1.384525 CCCGTCAACCTTGTTGTGAA 58.615 50.000 6.83 0.00 0.00 3.18
3831 4005 1.064952 CCCGTCAACCTTGTTGTGAAC 59.935 52.381 6.83 0.00 0.00 3.18
3832 4006 1.740585 CCGTCAACCTTGTTGTGAACA 59.259 47.619 6.83 0.00 40.21 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.738521 CAAGGTCAGCGGTGGTCG 60.739 66.667 15.67 0.00 42.76 4.79
2 3 3.050275 GCAAGGTCAGCGGTGGTC 61.050 66.667 15.67 8.36 0.00 4.02
4 5 3.357079 GTGCAAGGTCAGCGGTGG 61.357 66.667 15.67 0.00 33.85 4.61
5 6 3.357079 GGTGCAAGGTCAGCGGTG 61.357 66.667 8.67 8.67 33.85 4.94
6 7 4.643387 GGGTGCAAGGTCAGCGGT 62.643 66.667 0.00 0.00 35.46 5.68
22 23 4.559063 CAGATCTGGGCTGGCCGG 62.559 72.222 22.32 22.32 36.85 6.13
23 24 4.559063 CCAGATCTGGGCTGGCCG 62.559 72.222 31.14 10.45 45.66 6.13
32 33 0.108472 TTCGAGCTGTGCCAGATCTG 60.108 55.000 16.24 16.24 43.67 2.90
33 34 0.829333 ATTCGAGCTGTGCCAGATCT 59.171 50.000 15.35 0.00 43.67 2.75
34 35 1.216122 GATTCGAGCTGTGCCAGATC 58.784 55.000 9.56 9.56 42.60 2.75
35 36 0.179062 GGATTCGAGCTGTGCCAGAT 60.179 55.000 0.00 0.00 32.44 2.90
36 37 1.219124 GGATTCGAGCTGTGCCAGA 59.781 57.895 0.00 0.00 32.44 3.86
37 38 0.809241 GAGGATTCGAGCTGTGCCAG 60.809 60.000 0.00 0.00 34.12 4.85
38 39 1.219124 GAGGATTCGAGCTGTGCCA 59.781 57.895 0.00 0.00 0.00 4.92
39 40 1.522580 GGAGGATTCGAGCTGTGCC 60.523 63.158 0.00 0.00 0.00 5.01
40 41 0.179062 ATGGAGGATTCGAGCTGTGC 60.179 55.000 0.00 0.00 0.00 4.57
41 42 1.137675 TCATGGAGGATTCGAGCTGTG 59.862 52.381 0.00 0.00 0.00 3.66
42 43 1.137872 GTCATGGAGGATTCGAGCTGT 59.862 52.381 0.00 0.00 0.00 4.40
43 44 1.539929 GGTCATGGAGGATTCGAGCTG 60.540 57.143 0.00 0.00 0.00 4.24
44 45 0.755686 GGTCATGGAGGATTCGAGCT 59.244 55.000 0.00 0.00 0.00 4.09
45 46 0.465705 TGGTCATGGAGGATTCGAGC 59.534 55.000 0.00 0.00 0.00 5.03
46 47 1.069823 CCTGGTCATGGAGGATTCGAG 59.930 57.143 0.00 0.00 0.00 4.04
47 48 1.123077 CCTGGTCATGGAGGATTCGA 58.877 55.000 0.00 0.00 0.00 3.71
48 49 0.107456 CCCTGGTCATGGAGGATTCG 59.893 60.000 7.66 0.00 0.00 3.34
49 50 0.179006 GCCCTGGTCATGGAGGATTC 60.179 60.000 7.66 0.00 0.00 2.52
50 51 1.925888 GCCCTGGTCATGGAGGATT 59.074 57.895 7.66 0.00 0.00 3.01
51 52 2.446848 CGCCCTGGTCATGGAGGAT 61.447 63.158 7.66 0.00 0.00 3.24
52 53 3.083349 CGCCCTGGTCATGGAGGA 61.083 66.667 7.66 0.00 0.00 3.71
53 54 4.864334 GCGCCCTGGTCATGGAGG 62.864 72.222 0.00 0.00 0.00 4.30
54 55 4.864334 GGCGCCCTGGTCATGGAG 62.864 72.222 18.11 0.00 0.00 3.86
77 78 3.512516 GAATGGCGCAGGTCAGGC 61.513 66.667 10.83 0.00 0.00 4.85
78 79 2.825836 GGAATGGCGCAGGTCAGG 60.826 66.667 10.83 0.00 0.00 3.86
79 80 2.046023 TGGAATGGCGCAGGTCAG 60.046 61.111 10.83 0.00 0.00 3.51
80 81 2.359850 GTGGAATGGCGCAGGTCA 60.360 61.111 10.83 0.00 0.00 4.02
81 82 3.499737 CGTGGAATGGCGCAGGTC 61.500 66.667 10.83 1.78 0.00 3.85
88 89 3.799755 GACACGGCGTGGAATGGC 61.800 66.667 39.03 14.94 46.35 4.40
89 90 3.487202 CGACACGGCGTGGAATGG 61.487 66.667 39.03 19.20 37.94 3.16
90 91 4.147322 GCGACACGGCGTGGAATG 62.147 66.667 39.03 26.32 37.94 2.67
100 101 4.764336 TTAGGCGGTCGCGACACG 62.764 66.667 37.26 34.19 43.06 4.49
101 102 3.177249 GTTAGGCGGTCGCGACAC 61.177 66.667 37.26 28.13 43.06 3.67
102 103 4.764336 CGTTAGGCGGTCGCGACA 62.764 66.667 37.26 16.71 43.06 4.35
103 104 4.465512 TCGTTAGGCGGTCGCGAC 62.466 66.667 30.67 30.67 43.06 5.19
104 105 4.170062 CTCGTTAGGCGGTCGCGA 62.170 66.667 3.71 3.71 43.06 5.87
106 107 2.403671 ATAGCTCGTTAGGCGGTCGC 62.404 60.000 6.83 6.83 41.72 5.19
107 108 0.660595 CATAGCTCGTTAGGCGGTCG 60.661 60.000 0.00 0.00 41.72 4.79
108 109 0.940047 GCATAGCTCGTTAGGCGGTC 60.940 60.000 0.00 0.00 41.72 4.79
109 110 1.067582 GCATAGCTCGTTAGGCGGT 59.932 57.895 0.00 0.00 41.72 5.68
110 111 1.664965 GGCATAGCTCGTTAGGCGG 60.665 63.158 0.00 0.00 41.72 6.13
111 112 0.249489 AAGGCATAGCTCGTTAGGCG 60.249 55.000 0.00 0.00 43.01 5.52
112 113 1.503294 GAAGGCATAGCTCGTTAGGC 58.497 55.000 0.00 0.00 0.00 3.93
113 114 1.270358 GGGAAGGCATAGCTCGTTAGG 60.270 57.143 0.00 0.00 0.00 2.69
114 115 1.603172 CGGGAAGGCATAGCTCGTTAG 60.603 57.143 0.00 0.00 0.00 2.34
115 116 0.387929 CGGGAAGGCATAGCTCGTTA 59.612 55.000 0.00 0.00 0.00 3.18
116 117 1.144057 CGGGAAGGCATAGCTCGTT 59.856 57.895 0.00 0.00 0.00 3.85
117 118 2.815308 CGGGAAGGCATAGCTCGT 59.185 61.111 0.00 0.00 0.00 4.18
118 119 2.663188 GCGGGAAGGCATAGCTCG 60.663 66.667 0.00 0.00 0.00 5.03
119 120 1.301322 GAGCGGGAAGGCATAGCTC 60.301 63.158 0.00 0.00 45.74 4.09
120 121 1.764054 AGAGCGGGAAGGCATAGCT 60.764 57.895 0.00 0.00 41.29 3.32
121 122 1.596477 CAGAGCGGGAAGGCATAGC 60.596 63.158 0.00 0.00 34.64 2.97
122 123 1.596477 GCAGAGCGGGAAGGCATAG 60.596 63.158 0.00 0.00 34.64 2.23
123 124 2.505982 GCAGAGCGGGAAGGCATA 59.494 61.111 0.00 0.00 34.64 3.14
124 125 4.496336 GGCAGAGCGGGAAGGCAT 62.496 66.667 0.00 0.00 34.64 4.40
133 134 4.880537 CAGGTAGGCGGCAGAGCG 62.881 72.222 13.08 1.55 38.18 5.03
563 564 4.179599 CCCTCCCCTCTCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
564 565 4.179599 CCCCTCCCCTCTCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
565 566 3.036959 TCCCCTCCCCTCTCCCTC 61.037 72.222 0.00 0.00 0.00 4.30
566 567 3.039526 CTCCCCTCCCCTCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
567 568 4.179599 CCTCCCCTCCCCTCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
568 569 3.036959 TCCTCCCCTCCCCTCTCC 61.037 72.222 0.00 0.00 0.00 3.71
569 570 2.284151 GTCCTCCCCTCCCCTCTC 59.716 72.222 0.00 0.00 0.00 3.20
570 571 3.756783 CGTCCTCCCCTCCCCTCT 61.757 72.222 0.00 0.00 0.00 3.69
571 572 3.742248 CTCGTCCTCCCCTCCCCTC 62.742 73.684 0.00 0.00 0.00 4.30
572 573 3.756783 CTCGTCCTCCCCTCCCCT 61.757 72.222 0.00 0.00 0.00 4.79
573 574 4.862823 CCTCGTCCTCCCCTCCCC 62.863 77.778 0.00 0.00 0.00 4.81
574 575 4.077180 ACCTCGTCCTCCCCTCCC 62.077 72.222 0.00 0.00 0.00 4.30
575 576 2.760385 CACCTCGTCCTCCCCTCC 60.760 72.222 0.00 0.00 0.00 4.30
576 577 2.037527 ACACCTCGTCCTCCCCTC 59.962 66.667 0.00 0.00 0.00 4.30
577 578 2.283966 CACACCTCGTCCTCCCCT 60.284 66.667 0.00 0.00 0.00 4.79
578 579 3.391382 CCACACCTCGTCCTCCCC 61.391 72.222 0.00 0.00 0.00 4.81
579 580 4.083862 GCCACACCTCGTCCTCCC 62.084 72.222 0.00 0.00 0.00 4.30
580 581 4.436998 CGCCACACCTCGTCCTCC 62.437 72.222 0.00 0.00 0.00 4.30
581 582 4.436998 CCGCCACACCTCGTCCTC 62.437 72.222 0.00 0.00 0.00 3.71
642 643 4.357947 TGTGGTGTCGCTCTCGCC 62.358 66.667 0.00 0.00 36.18 5.54
643 644 2.196382 TAGTGTGGTGTCGCTCTCGC 62.196 60.000 0.00 0.00 35.26 5.03
644 645 0.240145 TTAGTGTGGTGTCGCTCTCG 59.760 55.000 0.00 0.00 0.00 4.04
645 646 2.288273 ACTTTAGTGTGGTGTCGCTCTC 60.288 50.000 0.00 0.00 0.00 3.20
646 647 1.687123 ACTTTAGTGTGGTGTCGCTCT 59.313 47.619 0.00 0.00 0.00 4.09
647 648 2.150397 ACTTTAGTGTGGTGTCGCTC 57.850 50.000 0.00 0.00 0.00 5.03
648 649 2.614829 AACTTTAGTGTGGTGTCGCT 57.385 45.000 0.00 0.00 0.00 4.93
649 650 3.064271 TGAAAACTTTAGTGTGGTGTCGC 59.936 43.478 0.00 0.00 0.00 5.19
650 651 4.868450 TGAAAACTTTAGTGTGGTGTCG 57.132 40.909 0.00 0.00 0.00 4.35
714 715 9.882856 GAAAATCGTATAGTAACTCTTTCAACG 57.117 33.333 0.00 0.00 0.00 4.10
836 972 2.203788 AGTGGTGGGCCTCTTCGA 60.204 61.111 4.53 0.00 35.23 3.71
892 1034 2.438021 TGGAGAGGCTAGAGAGAGAGAC 59.562 54.545 0.00 0.00 0.00 3.36
1105 1247 2.469847 CGAACCGTCGTCGTCGTA 59.530 61.111 10.76 0.00 42.53 3.43
1205 1347 2.579684 GAAGGAAGCCGAGGATGCGT 62.580 60.000 0.00 0.00 0.00 5.24
1257 1399 0.457035 CAAATCCAGGCGACCCAATG 59.543 55.000 0.00 0.00 0.00 2.82
1373 1527 5.394802 AGAATGATCATACGACGTCATAGC 58.605 41.667 17.16 0.00 31.49 2.97
1418 1572 1.588404 CAGCTTCGCACGTAACTATGG 59.412 52.381 0.00 0.00 0.00 2.74
1448 1602 6.457663 GCCAACAGATAAACATATGCACGTAA 60.458 38.462 1.58 0.00 0.00 3.18
1481 1635 4.813027 CAAGCACAAGTGGCTCAAATTAT 58.187 39.130 2.00 0.00 41.66 1.28
1491 1645 1.280066 GTGTTTGCAAGCACAAGTGG 58.720 50.000 33.26 0.00 39.55 4.00
1539 1693 7.756395 ATCCATTTCATTATGAACTAGGCAG 57.244 36.000 7.19 0.00 35.89 4.85
1554 1708 2.163412 GCACGGTTAGCAATCCATTTCA 59.837 45.455 0.00 0.00 0.00 2.69
1611 1765 0.387565 AAACGTGTGGCCCAATTGTC 59.612 50.000 0.00 0.00 0.00 3.18
1619 1773 1.791103 TTGCTAGCAAACGTGTGGCC 61.791 55.000 27.50 0.00 32.44 5.36
1646 1800 1.105759 GCCCACTGCCCATTCATCTC 61.106 60.000 0.00 0.00 0.00 2.75
1663 1817 2.680312 TGAACTAGACAGATGCAGCC 57.320 50.000 0.00 0.00 0.00 4.85
1668 1822 9.551734 TCCATTTCATTATGAACTAGACAGATG 57.448 33.333 7.19 6.15 35.89 2.90
1701 1855 0.947180 CCCACAAAGCATTGCAGTGC 60.947 55.000 25.24 25.24 45.38 4.40
1703 1857 1.069049 GTTCCCACAAAGCATTGCAGT 59.931 47.619 11.91 3.54 40.34 4.40
1714 1868 4.219507 ACGATGCAATTTATGTTCCCACAA 59.780 37.500 0.00 0.00 36.16 3.33
1715 1869 3.761218 ACGATGCAATTTATGTTCCCACA 59.239 39.130 0.00 0.00 37.31 4.17
1749 1903 5.514136 CCAGGAGGTACAGTGGAAAAATGTA 60.514 44.000 0.00 0.00 31.04 2.29
1759 1913 1.347707 TCTTTGCCAGGAGGTACAGTG 59.652 52.381 0.00 0.00 37.19 3.66
1769 1923 5.814705 TGTAAAACAAAACATCTTTGCCAGG 59.185 36.000 0.00 0.00 32.93 4.45
1865 2019 3.076484 ACAATGGGAATATGCTATGGGCT 59.924 43.478 0.00 0.00 42.39 5.19
1895 2049 5.236478 CCGTTGGTTTGGTACAGATATCATC 59.764 44.000 5.32 0.00 42.39 2.92
1950 2104 1.126846 GCTCTTCACGTGTGGAATTCG 59.873 52.381 16.51 4.65 0.00 3.34
1961 2115 3.745975 TGAGTTGTAAATGGCTCTTCACG 59.254 43.478 0.00 0.00 0.00 4.35
1978 2132 6.862209 TGCAGAAACTAAACAATGTTGAGTT 58.138 32.000 20.26 20.26 31.79 3.01
2120 2276 5.869753 ACAGCAGAAACAATATGACAGAC 57.130 39.130 0.00 0.00 0.00 3.51
2130 2286 5.010922 AGGCATCAATAAACAGCAGAAACAA 59.989 36.000 0.00 0.00 0.00 2.83
2476 2632 1.133823 TCAAGGGAAGCAAGTGCAAGA 60.134 47.619 6.00 0.00 45.16 3.02
3081 3240 5.964477 AGAAGAGGTGTACAATATCCTTCCA 59.036 40.000 0.00 0.00 31.76 3.53
3096 3255 2.421619 GAGCAAGAACCAGAAGAGGTG 58.578 52.381 0.00 0.00 42.25 4.00
3159 3325 8.289618 TCAAGCACTTGAATAACATTGTTAGAC 58.710 33.333 14.18 10.73 45.56 2.59
3183 3353 6.230472 AGTTAGAGCACACATACAACATTCA 58.770 36.000 0.00 0.00 0.00 2.57
3200 3374 9.273016 TCAACATAAAAGTTCCTGAAGTTAGAG 57.727 33.333 0.63 0.00 33.87 2.43
3218 3392 9.904198 TGTCAAGGATCATTAGAATCAACATAA 57.096 29.630 0.00 0.00 0.00 1.90
3253 3427 1.520787 GCCAATTGCAGCATCAGCC 60.521 57.895 0.00 0.00 43.56 4.85
3272 3446 3.264897 GCAGGCATACCGTCAGCG 61.265 66.667 0.00 0.00 42.76 5.18
3289 3463 1.677637 GGACTACCTTGCCTCCTCGG 61.678 65.000 0.00 0.00 0.00 4.63
3292 3466 0.971447 GTCGGACTACCTTGCCTCCT 60.971 60.000 0.00 0.00 0.00 3.69
3347 3521 5.707242 TTGCTAAGTCCGGTCATAGATAG 57.293 43.478 13.93 4.54 0.00 2.08
3351 3525 4.058817 GGATTTGCTAAGTCCGGTCATAG 58.941 47.826 0.00 3.69 0.00 2.23
3354 3528 1.626321 TGGATTTGCTAAGTCCGGTCA 59.374 47.619 0.00 0.00 34.72 4.02
3356 3530 1.628846 AGTGGATTTGCTAAGTCCGGT 59.371 47.619 0.00 0.00 34.72 5.28
3365 3539 1.064389 GCCTTAGGGAGTGGATTTGCT 60.064 52.381 0.00 0.00 33.58 3.91
3374 3548 1.636003 CCAAAGAAGGCCTTAGGGAGT 59.364 52.381 20.54 0.00 33.58 3.85
3389 3563 4.142381 GCTGGGAAAACTATAGTGCCAAAG 60.142 45.833 6.06 10.49 31.81 2.77
3395 3569 5.368989 CCTTAGGCTGGGAAAACTATAGTG 58.631 45.833 6.06 0.00 0.00 2.74
3396 3570 5.632034 CCTTAGGCTGGGAAAACTATAGT 57.368 43.478 0.00 0.00 0.00 2.12
3408 3582 2.590092 CCGAACCCCTTAGGCTGG 59.410 66.667 0.00 0.00 40.58 4.85
3409 3583 2.590092 CCCGAACCCCTTAGGCTG 59.410 66.667 0.00 0.00 40.58 4.85
3410 3584 2.691252 CCCCGAACCCCTTAGGCT 60.691 66.667 0.00 0.00 40.58 4.58
3411 3585 3.013327 ACCCCGAACCCCTTAGGC 61.013 66.667 0.00 0.00 40.58 3.93
3412 3586 1.614226 TCACCCCGAACCCCTTAGG 60.614 63.158 0.00 0.00 43.78 2.69
3413 3587 0.616679 TCTCACCCCGAACCCCTTAG 60.617 60.000 0.00 0.00 0.00 2.18
3414 3588 0.616679 CTCTCACCCCGAACCCCTTA 60.617 60.000 0.00 0.00 0.00 2.69
3415 3589 1.918800 CTCTCACCCCGAACCCCTT 60.919 63.158 0.00 0.00 0.00 3.95
3416 3590 2.284699 CTCTCACCCCGAACCCCT 60.285 66.667 0.00 0.00 0.00 4.79
3417 3591 1.775934 AAACTCTCACCCCGAACCCC 61.776 60.000 0.00 0.00 0.00 4.95
3418 3592 0.109913 AAAACTCTCACCCCGAACCC 59.890 55.000 0.00 0.00 0.00 4.11
3419 3593 1.235724 CAAAACTCTCACCCCGAACC 58.764 55.000 0.00 0.00 0.00 3.62
3420 3594 1.235724 CCAAAACTCTCACCCCGAAC 58.764 55.000 0.00 0.00 0.00 3.95
3421 3595 0.536460 GCCAAAACTCTCACCCCGAA 60.536 55.000 0.00 0.00 0.00 4.30
3422 3596 1.072505 GCCAAAACTCTCACCCCGA 59.927 57.895 0.00 0.00 0.00 5.14
3423 3597 1.228124 TGCCAAAACTCTCACCCCG 60.228 57.895 0.00 0.00 0.00 5.73
3424 3598 0.178990 AGTGCCAAAACTCTCACCCC 60.179 55.000 0.00 0.00 0.00 4.95
3425 3599 2.038557 TCTAGTGCCAAAACTCTCACCC 59.961 50.000 0.00 0.00 0.00 4.61
3426 3600 3.244249 ACTCTAGTGCCAAAACTCTCACC 60.244 47.826 0.00 0.00 0.00 4.02
3427 3601 3.996480 ACTCTAGTGCCAAAACTCTCAC 58.004 45.455 0.00 0.00 0.00 3.51
3428 3602 4.689612 AACTCTAGTGCCAAAACTCTCA 57.310 40.909 0.00 0.00 0.00 3.27
3429 3603 5.049336 GGAAAACTCTAGTGCCAAAACTCTC 60.049 44.000 0.00 0.00 0.00 3.20
3430 3604 4.822350 GGAAAACTCTAGTGCCAAAACTCT 59.178 41.667 0.00 0.00 0.00 3.24
3431 3605 4.023107 GGGAAAACTCTAGTGCCAAAACTC 60.023 45.833 0.00 0.00 0.00 3.01
3432 3606 3.889538 GGGAAAACTCTAGTGCCAAAACT 59.110 43.478 0.00 0.00 0.00 2.66
3433 3607 3.634910 TGGGAAAACTCTAGTGCCAAAAC 59.365 43.478 0.00 0.00 28.72 2.43
3434 3608 3.904717 TGGGAAAACTCTAGTGCCAAAA 58.095 40.909 0.00 0.00 28.72 2.44
3435 3609 3.586470 TGGGAAAACTCTAGTGCCAAA 57.414 42.857 0.00 0.00 28.72 3.28
3436 3610 3.219281 GTTGGGAAAACTCTAGTGCCAA 58.781 45.455 0.00 0.00 40.05 4.52
3437 3611 2.488347 GGTTGGGAAAACTCTAGTGCCA 60.488 50.000 0.00 0.00 0.00 4.92
3438 3612 2.160205 GGTTGGGAAAACTCTAGTGCC 58.840 52.381 0.00 0.00 0.00 5.01
3439 3613 3.141767 AGGTTGGGAAAACTCTAGTGC 57.858 47.619 0.00 0.00 0.00 4.40
3440 3614 5.246307 CCTTAGGTTGGGAAAACTCTAGTG 58.754 45.833 0.00 0.00 0.00 2.74
3441 3615 5.500546 CCTTAGGTTGGGAAAACTCTAGT 57.499 43.478 0.00 0.00 0.00 2.57
3453 3627 2.271173 GACGGGCCCTTAGGTTGG 59.729 66.667 22.43 3.46 34.57 3.77
3454 3628 2.271173 GGACGGGCCCTTAGGTTG 59.729 66.667 22.43 4.34 34.57 3.77
3455 3629 2.204029 TGGACGGGCCCTTAGGTT 60.204 61.111 22.43 0.00 34.97 3.50
3456 3630 3.007323 GTGGACGGGCCCTTAGGT 61.007 66.667 22.43 10.50 34.97 3.08
3457 3631 3.793888 GGTGGACGGGCCCTTAGG 61.794 72.222 22.43 6.52 34.97 2.69
3458 3632 3.793888 GGGTGGACGGGCCCTTAG 61.794 72.222 22.43 6.96 41.63 2.18
3464 3638 3.793888 CTTAGGGGGTGGACGGGC 61.794 72.222 0.00 0.00 0.00 6.13
3465 3639 3.087906 CCTTAGGGGGTGGACGGG 61.088 72.222 0.00 0.00 0.00 5.28
3466 3640 3.793888 GCCTTAGGGGGTGGACGG 61.794 72.222 0.00 0.00 35.12 4.79
3467 3641 3.793888 GGCCTTAGGGGGTGGACG 61.794 72.222 0.00 0.00 35.12 4.79
3468 3642 1.923006 GAAGGCCTTAGGGGGTGGAC 61.923 65.000 20.54 0.00 35.12 4.02
3469 3643 1.618447 GAAGGCCTTAGGGGGTGGA 60.618 63.158 20.54 0.00 35.12 4.02
3470 3644 1.214992 AAGAAGGCCTTAGGGGGTGG 61.215 60.000 20.54 0.00 32.24 4.61
3471 3645 0.704664 AAAGAAGGCCTTAGGGGGTG 59.295 55.000 20.54 0.00 34.00 4.61
3472 3646 0.704664 CAAAGAAGGCCTTAGGGGGT 59.295 55.000 20.54 0.00 34.00 4.95
3473 3647 0.033109 CCAAAGAAGGCCTTAGGGGG 60.033 60.000 20.54 14.34 34.00 5.40
3474 3648 3.596362 CCAAAGAAGGCCTTAGGGG 57.404 57.895 20.54 13.96 34.00 4.79
3483 3657 5.125578 GGGAAAACTATAGTGCCAAAGAAGG 59.874 44.000 6.06 0.00 0.00 3.46
3484 3658 5.710099 TGGGAAAACTATAGTGCCAAAGAAG 59.290 40.000 6.06 0.00 28.72 2.85
3485 3659 5.636123 TGGGAAAACTATAGTGCCAAAGAA 58.364 37.500 6.06 0.00 28.72 2.52
3486 3660 5.249780 TGGGAAAACTATAGTGCCAAAGA 57.750 39.130 6.06 0.00 28.72 2.52
3487 3661 4.142381 GCTGGGAAAACTATAGTGCCAAAG 60.142 45.833 6.06 10.49 31.81 2.77
3488 3662 3.761752 GCTGGGAAAACTATAGTGCCAAA 59.238 43.478 6.06 1.17 31.81 3.28
3489 3663 3.352648 GCTGGGAAAACTATAGTGCCAA 58.647 45.455 6.06 1.64 31.81 4.52
3490 3664 2.356741 GGCTGGGAAAACTATAGTGCCA 60.357 50.000 18.46 11.19 37.91 4.92
3491 3665 2.092375 AGGCTGGGAAAACTATAGTGCC 60.092 50.000 16.55 16.55 38.24 5.01
3492 3666 3.283259 AGGCTGGGAAAACTATAGTGC 57.717 47.619 6.06 3.37 0.00 4.40
3493 3667 5.368989 CCTTAGGCTGGGAAAACTATAGTG 58.631 45.833 6.06 0.00 0.00 2.74
3494 3668 5.632034 CCTTAGGCTGGGAAAACTATAGT 57.368 43.478 0.00 0.00 0.00 2.12
3506 3680 2.590092 CCGAACCCCTTAGGCTGG 59.410 66.667 0.00 0.00 40.58 4.85
3507 3681 2.590092 CCCGAACCCCTTAGGCTG 59.410 66.667 0.00 0.00 40.58 4.85
3508 3682 2.691252 CCCCGAACCCCTTAGGCT 60.691 66.667 0.00 0.00 40.58 4.58
3509 3683 3.013327 ACCCCGAACCCCTTAGGC 61.013 66.667 0.00 0.00 40.58 3.93
3510 3684 1.614226 TCACCCCGAACCCCTTAGG 60.614 63.158 0.00 0.00 43.78 2.69
3511 3685 0.616679 TCTCACCCCGAACCCCTTAG 60.617 60.000 0.00 0.00 0.00 2.18
3512 3686 0.616679 CTCTCACCCCGAACCCCTTA 60.617 60.000 0.00 0.00 0.00 2.69
3513 3687 1.918800 CTCTCACCCCGAACCCCTT 60.919 63.158 0.00 0.00 0.00 3.95
3514 3688 2.284699 CTCTCACCCCGAACCCCT 60.285 66.667 0.00 0.00 0.00 4.79
3515 3689 1.775934 AAACTCTCACCCCGAACCCC 61.776 60.000 0.00 0.00 0.00 4.95
3516 3690 0.109913 AAAACTCTCACCCCGAACCC 59.890 55.000 0.00 0.00 0.00 4.11
3517 3691 1.235724 CAAAACTCTCACCCCGAACC 58.764 55.000 0.00 0.00 0.00 3.62
3518 3692 1.235724 CCAAAACTCTCACCCCGAAC 58.764 55.000 0.00 0.00 0.00 3.95
3519 3693 0.536460 GCCAAAACTCTCACCCCGAA 60.536 55.000 0.00 0.00 0.00 4.30
3520 3694 1.072505 GCCAAAACTCTCACCCCGA 59.927 57.895 0.00 0.00 0.00 5.14
3521 3695 1.228124 TGCCAAAACTCTCACCCCG 60.228 57.895 0.00 0.00 0.00 5.73
3522 3696 0.178990 AGTGCCAAAACTCTCACCCC 60.179 55.000 0.00 0.00 0.00 4.95
3523 3697 2.038557 TCTAGTGCCAAAACTCTCACCC 59.961 50.000 0.00 0.00 0.00 4.61
3524 3698 3.244249 ACTCTAGTGCCAAAACTCTCACC 60.244 47.826 0.00 0.00 0.00 4.02
3525 3699 3.996480 ACTCTAGTGCCAAAACTCTCAC 58.004 45.455 0.00 0.00 0.00 3.51
3526 3700 4.689612 AACTCTAGTGCCAAAACTCTCA 57.310 40.909 0.00 0.00 0.00 3.27
3527 3701 5.049336 GGAAAACTCTAGTGCCAAAACTCTC 60.049 44.000 0.00 0.00 0.00 3.20
3528 3702 4.822350 GGAAAACTCTAGTGCCAAAACTCT 59.178 41.667 0.00 0.00 0.00 3.24
3529 3703 4.023107 GGGAAAACTCTAGTGCCAAAACTC 60.023 45.833 0.00 0.00 0.00 3.01
3530 3704 3.889538 GGGAAAACTCTAGTGCCAAAACT 59.110 43.478 0.00 0.00 0.00 2.66
3531 3705 3.634910 TGGGAAAACTCTAGTGCCAAAAC 59.365 43.478 0.00 0.00 28.72 2.43
3532 3706 3.904717 TGGGAAAACTCTAGTGCCAAAA 58.095 40.909 0.00 0.00 28.72 2.44
3533 3707 3.586470 TGGGAAAACTCTAGTGCCAAA 57.414 42.857 0.00 0.00 28.72 3.28
3534 3708 3.219281 GTTGGGAAAACTCTAGTGCCAA 58.781 45.455 0.00 0.00 40.05 4.52
3535 3709 2.488347 GGTTGGGAAAACTCTAGTGCCA 60.488 50.000 0.00 0.00 0.00 4.92
3536 3710 2.160205 GGTTGGGAAAACTCTAGTGCC 58.840 52.381 0.00 0.00 0.00 5.01
3537 3711 3.141767 AGGTTGGGAAAACTCTAGTGC 57.858 47.619 0.00 0.00 0.00 4.40
3538 3712 5.246307 CCTTAGGTTGGGAAAACTCTAGTG 58.754 45.833 0.00 0.00 0.00 2.74
3539 3713 5.500546 CCTTAGGTTGGGAAAACTCTAGT 57.499 43.478 0.00 0.00 0.00 2.57
3551 3725 1.378119 GAACGGGCCCTTAGGTTGG 60.378 63.158 22.43 3.46 34.57 3.77
3552 3726 1.743995 CGAACGGGCCCTTAGGTTG 60.744 63.158 22.43 2.59 34.57 3.77
3553 3727 2.666812 CGAACGGGCCCTTAGGTT 59.333 61.111 22.43 16.71 34.57 3.50
3554 3728 2.803593 TACCGAACGGGCCCTTAGGT 62.804 60.000 28.46 28.46 40.62 3.08
3555 3729 1.405272 ATACCGAACGGGCCCTTAGG 61.405 60.000 22.43 22.62 40.62 2.69
3556 3730 1.000171 GTATACCGAACGGGCCCTTAG 60.000 57.143 22.43 13.03 40.62 2.18
3557 3731 1.039856 GTATACCGAACGGGCCCTTA 58.960 55.000 22.43 0.00 40.62 2.69
3558 3732 1.825341 GTATACCGAACGGGCCCTT 59.175 57.895 22.43 7.92 40.62 3.95
3559 3733 2.492773 CGTATACCGAACGGGCCCT 61.493 63.158 22.43 0.00 40.62 5.19
3560 3734 2.028043 CGTATACCGAACGGGCCC 59.972 66.667 13.57 13.57 40.62 5.80
3565 3739 3.446799 TGAAATTCCCGTATACCGAACG 58.553 45.455 0.00 0.00 39.56 3.95
3566 3740 4.685924 TCTGAAATTCCCGTATACCGAAC 58.314 43.478 0.00 0.00 39.56 3.95
3567 3741 4.202182 CCTCTGAAATTCCCGTATACCGAA 60.202 45.833 0.00 0.03 39.56 4.30
3568 3742 3.319972 CCTCTGAAATTCCCGTATACCGA 59.680 47.826 0.00 0.00 39.56 4.69
3569 3743 3.319972 TCCTCTGAAATTCCCGTATACCG 59.680 47.826 0.00 0.00 0.00 4.02
3570 3744 4.950205 TCCTCTGAAATTCCCGTATACC 57.050 45.455 0.00 0.00 0.00 2.73
3571 3745 5.667466 TGTTCCTCTGAAATTCCCGTATAC 58.333 41.667 0.00 0.00 30.79 1.47
3572 3746 5.943349 TGTTCCTCTGAAATTCCCGTATA 57.057 39.130 0.00 0.00 30.79 1.47
3573 3747 4.837093 TGTTCCTCTGAAATTCCCGTAT 57.163 40.909 0.00 0.00 30.79 3.06
3574 3748 4.837093 ATGTTCCTCTGAAATTCCCGTA 57.163 40.909 0.00 0.00 30.79 4.02
3575 3749 3.721087 ATGTTCCTCTGAAATTCCCGT 57.279 42.857 0.00 0.00 30.79 5.28
3576 3750 4.380867 CCAAATGTTCCTCTGAAATTCCCG 60.381 45.833 0.00 0.00 30.79 5.14
3577 3751 4.772100 TCCAAATGTTCCTCTGAAATTCCC 59.228 41.667 0.00 0.00 30.79 3.97
3578 3752 5.982890 TCCAAATGTTCCTCTGAAATTCC 57.017 39.130 0.00 0.00 30.79 3.01
3579 3753 7.219484 TCTTCCAAATGTTCCTCTGAAATTC 57.781 36.000 0.00 0.00 30.79 2.17
3580 3754 7.787623 ATCTTCCAAATGTTCCTCTGAAATT 57.212 32.000 0.00 0.00 30.79 1.82
3581 3755 7.787623 AATCTTCCAAATGTTCCTCTGAAAT 57.212 32.000 0.00 0.00 30.79 2.17
3582 3756 7.944554 ACTAATCTTCCAAATGTTCCTCTGAAA 59.055 33.333 0.00 0.00 30.79 2.69
3583 3757 7.461749 ACTAATCTTCCAAATGTTCCTCTGAA 58.538 34.615 0.00 0.00 0.00 3.02
3584 3758 7.020827 ACTAATCTTCCAAATGTTCCTCTGA 57.979 36.000 0.00 0.00 0.00 3.27
3585 3759 7.693969 AACTAATCTTCCAAATGTTCCTCTG 57.306 36.000 0.00 0.00 0.00 3.35
3586 3760 7.394641 GGAAACTAATCTTCCAAATGTTCCTCT 59.605 37.037 0.00 0.00 41.79 3.69
3587 3761 7.539436 GGAAACTAATCTTCCAAATGTTCCTC 58.461 38.462 0.00 0.00 41.79 3.71
3588 3762 6.151144 CGGAAACTAATCTTCCAAATGTTCCT 59.849 38.462 2.76 0.00 42.22 3.36
3589 3763 6.072119 ACGGAAACTAATCTTCCAAATGTTCC 60.072 38.462 2.76 0.00 42.22 3.62
3590 3764 6.909909 ACGGAAACTAATCTTCCAAATGTTC 58.090 36.000 2.76 0.00 42.22 3.18
3591 3765 6.894339 ACGGAAACTAATCTTCCAAATGTT 57.106 33.333 2.76 0.00 42.22 2.71
3592 3766 6.598064 CCTACGGAAACTAATCTTCCAAATGT 59.402 38.462 2.76 0.00 42.22 2.71
3593 3767 6.821665 TCCTACGGAAACTAATCTTCCAAATG 59.178 38.462 2.76 0.00 42.22 2.32
3594 3768 6.954232 TCCTACGGAAACTAATCTTCCAAAT 58.046 36.000 2.76 0.00 42.22 2.32
3595 3769 6.363167 TCCTACGGAAACTAATCTTCCAAA 57.637 37.500 2.76 0.00 42.22 3.28
3596 3770 6.363167 TTCCTACGGAAACTAATCTTCCAA 57.637 37.500 2.76 0.00 42.22 3.53
3597 3771 6.555463 ATTCCTACGGAAACTAATCTTCCA 57.445 37.500 0.00 0.00 45.41 3.53
3598 3772 7.860918 AAATTCCTACGGAAACTAATCTTCC 57.139 36.000 0.00 0.00 45.41 3.46
3599 3773 8.114905 CGAAAATTCCTACGGAAACTAATCTTC 58.885 37.037 0.00 0.00 45.41 2.87
3600 3774 7.413767 GCGAAAATTCCTACGGAAACTAATCTT 60.414 37.037 0.00 0.00 45.41 2.40
3601 3775 6.036844 GCGAAAATTCCTACGGAAACTAATCT 59.963 38.462 0.00 0.00 45.41 2.40
3602 3776 6.190264 GCGAAAATTCCTACGGAAACTAATC 58.810 40.000 0.00 0.00 45.41 1.75
3603 3777 5.065602 GGCGAAAATTCCTACGGAAACTAAT 59.934 40.000 0.00 0.00 45.41 1.73
3604 3778 4.392754 GGCGAAAATTCCTACGGAAACTAA 59.607 41.667 0.00 0.00 45.41 2.24
3605 3779 3.934579 GGCGAAAATTCCTACGGAAACTA 59.065 43.478 0.00 0.00 45.41 2.24
3606 3780 2.745821 GGCGAAAATTCCTACGGAAACT 59.254 45.455 0.00 0.00 45.41 2.66
3607 3781 2.159476 GGGCGAAAATTCCTACGGAAAC 60.159 50.000 0.00 0.00 45.41 2.78
3608 3782 2.086094 GGGCGAAAATTCCTACGGAAA 58.914 47.619 0.00 0.00 45.41 3.13
3609 3783 1.003349 TGGGCGAAAATTCCTACGGAA 59.997 47.619 0.00 0.00 46.39 4.30
3610 3784 0.614294 TGGGCGAAAATTCCTACGGA 59.386 50.000 0.00 0.00 0.00 4.69
3611 3785 1.675552 ATGGGCGAAAATTCCTACGG 58.324 50.000 0.00 0.00 0.00 4.02
3612 3786 6.148811 ACATAATATGGGCGAAAATTCCTACG 59.851 38.462 5.16 0.00 33.60 3.51
3613 3787 7.448748 ACATAATATGGGCGAAAATTCCTAC 57.551 36.000 5.16 0.00 33.60 3.18
3614 3788 7.094975 CGAACATAATATGGGCGAAAATTCCTA 60.095 37.037 5.16 0.00 34.38 2.94
3615 3789 6.293955 CGAACATAATATGGGCGAAAATTCCT 60.294 38.462 5.16 0.00 34.38 3.36
3616 3790 5.856455 CGAACATAATATGGGCGAAAATTCC 59.144 40.000 5.16 0.00 34.38 3.01
3617 3791 5.856455 CCGAACATAATATGGGCGAAAATTC 59.144 40.000 15.17 3.34 34.38 2.17
3618 3792 5.300792 ACCGAACATAATATGGGCGAAAATT 59.699 36.000 15.17 0.00 34.38 1.82
3619 3793 4.825085 ACCGAACATAATATGGGCGAAAAT 59.175 37.500 15.17 0.58 34.38 1.82
3620 3794 4.200874 ACCGAACATAATATGGGCGAAAA 58.799 39.130 15.17 0.00 34.38 2.29
3621 3795 3.811083 ACCGAACATAATATGGGCGAAA 58.189 40.909 15.17 0.00 34.38 3.46
3622 3796 3.478857 ACCGAACATAATATGGGCGAA 57.521 42.857 15.17 0.00 34.38 4.70
3623 3797 3.478857 AACCGAACATAATATGGGCGA 57.521 42.857 15.17 0.00 34.38 5.54
3624 3798 3.562141 TCAAACCGAACATAATATGGGCG 59.438 43.478 5.16 7.48 33.60 6.13
3625 3799 5.507315 CCTTCAAACCGAACATAATATGGGC 60.507 44.000 5.16 0.00 33.60 5.36
3626 3800 5.825679 TCCTTCAAACCGAACATAATATGGG 59.174 40.000 5.16 0.00 33.60 4.00
3627 3801 6.935741 TCCTTCAAACCGAACATAATATGG 57.064 37.500 5.16 0.00 33.60 2.74
3628 3802 8.840321 AGATTCCTTCAAACCGAACATAATATG 58.160 33.333 0.00 0.00 0.00 1.78
3629 3803 8.980481 AGATTCCTTCAAACCGAACATAATAT 57.020 30.769 0.00 0.00 0.00 1.28
3630 3804 9.542462 CTAGATTCCTTCAAACCGAACATAATA 57.458 33.333 0.00 0.00 0.00 0.98
3631 3805 7.499232 CCTAGATTCCTTCAAACCGAACATAAT 59.501 37.037 0.00 0.00 0.00 1.28
3632 3806 6.821665 CCTAGATTCCTTCAAACCGAACATAA 59.178 38.462 0.00 0.00 0.00 1.90
3633 3807 6.155565 TCCTAGATTCCTTCAAACCGAACATA 59.844 38.462 0.00 0.00 0.00 2.29
3634 3808 5.045869 TCCTAGATTCCTTCAAACCGAACAT 60.046 40.000 0.00 0.00 0.00 2.71
3635 3809 4.285003 TCCTAGATTCCTTCAAACCGAACA 59.715 41.667 0.00 0.00 0.00 3.18
3636 3810 4.828829 TCCTAGATTCCTTCAAACCGAAC 58.171 43.478 0.00 0.00 0.00 3.95
3637 3811 5.045869 ACATCCTAGATTCCTTCAAACCGAA 60.046 40.000 0.00 0.00 0.00 4.30
3638 3812 4.469945 ACATCCTAGATTCCTTCAAACCGA 59.530 41.667 0.00 0.00 0.00 4.69
3639 3813 4.572389 CACATCCTAGATTCCTTCAAACCG 59.428 45.833 0.00 0.00 0.00 4.44
3640 3814 4.336713 GCACATCCTAGATTCCTTCAAACC 59.663 45.833 0.00 0.00 0.00 3.27
3641 3815 4.943705 TGCACATCCTAGATTCCTTCAAAC 59.056 41.667 0.00 0.00 0.00 2.93
3642 3816 5.178096 TGCACATCCTAGATTCCTTCAAA 57.822 39.130 0.00 0.00 0.00 2.69
3643 3817 4.842531 TGCACATCCTAGATTCCTTCAA 57.157 40.909 0.00 0.00 0.00 2.69
3644 3818 5.371526 GAATGCACATCCTAGATTCCTTCA 58.628 41.667 0.00 0.00 0.00 3.02
3645 3819 4.759183 GGAATGCACATCCTAGATTCCTTC 59.241 45.833 12.14 0.00 39.27 3.46
3646 3820 4.166725 TGGAATGCACATCCTAGATTCCTT 59.833 41.667 18.45 0.00 41.77 3.36
3647 3821 3.718434 TGGAATGCACATCCTAGATTCCT 59.282 43.478 18.45 0.00 41.77 3.36
3648 3822 3.817647 GTGGAATGCACATCCTAGATTCC 59.182 47.826 18.45 11.37 41.65 3.01
3649 3823 4.514441 CAGTGGAATGCACATCCTAGATTC 59.486 45.833 18.45 2.64 37.85 2.52
3650 3824 4.458397 CAGTGGAATGCACATCCTAGATT 58.542 43.478 18.45 0.00 37.85 2.40
3651 3825 3.181447 CCAGTGGAATGCACATCCTAGAT 60.181 47.826 18.45 2.82 37.85 1.98
3652 3826 2.171237 CCAGTGGAATGCACATCCTAGA 59.829 50.000 18.45 0.00 37.85 2.43
3653 3827 2.171237 TCCAGTGGAATGCACATCCTAG 59.829 50.000 10.20 9.82 37.85 3.02
3654 3828 2.195727 TCCAGTGGAATGCACATCCTA 58.804 47.619 10.20 5.50 37.85 2.94
3655 3829 0.994247 TCCAGTGGAATGCACATCCT 59.006 50.000 10.20 0.12 37.85 3.24
3656 3830 1.838112 TTCCAGTGGAATGCACATCC 58.162 50.000 21.05 12.45 36.71 3.51
3657 3831 2.821969 ACTTTCCAGTGGAATGCACATC 59.178 45.455 28.87 0.00 41.71 3.06
3658 3832 2.821969 GACTTTCCAGTGGAATGCACAT 59.178 45.455 28.87 15.26 41.71 3.21
3659 3833 2.229792 GACTTTCCAGTGGAATGCACA 58.770 47.619 28.87 13.78 41.71 4.57
3660 3834 2.229792 TGACTTTCCAGTGGAATGCAC 58.770 47.619 28.87 23.65 41.71 4.57
3661 3835 2.655090 TGACTTTCCAGTGGAATGCA 57.345 45.000 28.87 24.39 41.71 3.96
3662 3836 2.416431 GCATGACTTTCCAGTGGAATGC 60.416 50.000 28.87 26.62 41.71 3.56
3663 3837 3.087031 AGCATGACTTTCCAGTGGAATG 58.913 45.455 27.84 27.84 41.71 2.67
3664 3838 3.446442 AGCATGACTTTCCAGTGGAAT 57.554 42.857 25.12 11.68 41.71 3.01
3665 3839 2.957402 AGCATGACTTTCCAGTGGAA 57.043 45.000 21.05 21.05 40.27 3.53
3666 3840 2.355108 GCTAGCATGACTTTCCAGTGGA 60.355 50.000 8.12 8.12 31.22 4.02
3667 3841 2.012673 GCTAGCATGACTTTCCAGTGG 58.987 52.381 10.63 1.40 31.22 4.00
3668 3842 2.983229 AGCTAGCATGACTTTCCAGTG 58.017 47.619 18.83 0.00 31.22 3.66
3669 3843 3.244700 ACAAGCTAGCATGACTTTCCAGT 60.245 43.478 25.64 0.00 35.17 4.00
3670 3844 3.341823 ACAAGCTAGCATGACTTTCCAG 58.658 45.455 25.64 0.00 0.00 3.86
3671 3845 3.423539 ACAAGCTAGCATGACTTTCCA 57.576 42.857 25.64 0.00 0.00 3.53
3672 3846 4.508662 AGTACAAGCTAGCATGACTTTCC 58.491 43.478 25.64 6.97 0.00 3.13
3673 3847 6.487689 AAAGTACAAGCTAGCATGACTTTC 57.512 37.500 26.63 14.83 31.76 2.62
3674 3848 6.486657 TGAAAAGTACAAGCTAGCATGACTTT 59.513 34.615 26.63 26.63 37.27 2.66
3675 3849 5.997746 TGAAAAGTACAAGCTAGCATGACTT 59.002 36.000 25.64 23.06 0.00 3.01
3676 3850 5.409826 GTGAAAAGTACAAGCTAGCATGACT 59.590 40.000 25.64 19.37 0.00 3.41
3677 3851 5.179368 TGTGAAAAGTACAAGCTAGCATGAC 59.821 40.000 25.64 17.68 0.00 3.06
3678 3852 5.304778 TGTGAAAAGTACAAGCTAGCATGA 58.695 37.500 25.64 7.39 0.00 3.07
3679 3853 5.391310 CCTGTGAAAAGTACAAGCTAGCATG 60.391 44.000 18.83 18.38 0.00 4.06
3680 3854 4.697352 CCTGTGAAAAGTACAAGCTAGCAT 59.303 41.667 18.83 0.65 0.00 3.79
3681 3855 4.065088 CCTGTGAAAAGTACAAGCTAGCA 58.935 43.478 18.83 0.00 0.00 3.49
3682 3856 4.315803 TCCTGTGAAAAGTACAAGCTAGC 58.684 43.478 6.62 6.62 0.00 3.42
3683 3857 6.861065 TTTCCTGTGAAAAGTACAAGCTAG 57.139 37.500 0.00 0.00 37.53 3.42
3684 3858 7.817418 AATTTCCTGTGAAAAGTACAAGCTA 57.183 32.000 0.00 0.00 43.37 3.32
3685 3859 6.715347 AATTTCCTGTGAAAAGTACAAGCT 57.285 33.333 0.00 0.00 43.37 3.74
3686 3860 8.865590 TTTAATTTCCTGTGAAAAGTACAAGC 57.134 30.769 0.00 0.00 43.37 4.01
3690 3864 9.459640 GGAGTTTTAATTTCCTGTGAAAAGTAC 57.540 33.333 0.00 0.00 43.37 2.73
3691 3865 9.191479 TGGAGTTTTAATTTCCTGTGAAAAGTA 57.809 29.630 0.00 0.00 43.37 2.24
3692 3866 8.073467 TGGAGTTTTAATTTCCTGTGAAAAGT 57.927 30.769 0.00 0.00 43.37 2.66
3693 3867 8.197439 ACTGGAGTTTTAATTTCCTGTGAAAAG 58.803 33.333 5.20 0.00 43.37 2.27
3694 3868 8.073467 ACTGGAGTTTTAATTTCCTGTGAAAA 57.927 30.769 5.20 0.00 43.37 2.29
3695 3869 7.654022 ACTGGAGTTTTAATTTCCTGTGAAA 57.346 32.000 5.20 0.00 44.22 2.69
3696 3870 8.215050 TCTACTGGAGTTTTAATTTCCTGTGAA 58.785 33.333 13.17 2.41 41.43 3.18
3697 3871 7.741785 TCTACTGGAGTTTTAATTTCCTGTGA 58.258 34.615 13.17 7.84 41.43 3.58
3698 3872 7.979444 TCTACTGGAGTTTTAATTTCCTGTG 57.021 36.000 13.17 6.26 41.43 3.66
3699 3873 8.218488 AGTTCTACTGGAGTTTTAATTTCCTGT 58.782 33.333 9.69 9.69 43.08 4.00
3700 3874 8.622948 AGTTCTACTGGAGTTTTAATTTCCTG 57.377 34.615 0.00 0.00 36.39 3.86
3701 3875 9.286170 GAAGTTCTACTGGAGTTTTAATTTCCT 57.714 33.333 0.00 0.00 32.12 3.36
3702 3876 8.228464 CGAAGTTCTACTGGAGTTTTAATTTCC 58.772 37.037 0.56 0.00 0.00 3.13
3703 3877 8.771766 ACGAAGTTCTACTGGAGTTTTAATTTC 58.228 33.333 0.56 0.00 37.78 2.17
3704 3878 8.557029 CACGAAGTTCTACTGGAGTTTTAATTT 58.443 33.333 0.56 0.00 41.61 1.82
3705 3879 7.713942 ACACGAAGTTCTACTGGAGTTTTAATT 59.286 33.333 0.56 0.00 41.61 1.40
3706 3880 7.215085 ACACGAAGTTCTACTGGAGTTTTAAT 58.785 34.615 0.56 0.00 41.61 1.40
3707 3881 6.576185 ACACGAAGTTCTACTGGAGTTTTAA 58.424 36.000 0.56 0.00 41.61 1.52
3708 3882 6.152932 ACACGAAGTTCTACTGGAGTTTTA 57.847 37.500 0.56 0.00 41.61 1.52
3709 3883 5.019785 ACACGAAGTTCTACTGGAGTTTT 57.980 39.130 0.56 0.00 41.61 2.43
3710 3884 4.667519 ACACGAAGTTCTACTGGAGTTT 57.332 40.909 0.56 0.00 41.61 2.66
3711 3885 4.667519 AACACGAAGTTCTACTGGAGTT 57.332 40.909 0.56 0.00 41.61 3.01
3722 3896 0.600255 CTCCGCCAGAACACGAAGTT 60.600 55.000 0.00 0.00 41.61 2.66
3724 3898 1.738099 CCTCCGCCAGAACACGAAG 60.738 63.158 0.00 0.00 0.00 3.79
3725 3899 2.342279 CCTCCGCCAGAACACGAA 59.658 61.111 0.00 0.00 0.00 3.85
3726 3900 4.373116 GCCTCCGCCAGAACACGA 62.373 66.667 0.00 0.00 0.00 4.35
3757 3931 1.226916 CGGCTAGACTGCAGCTCTG 60.227 63.158 21.70 14.96 39.09 3.35
3758 3932 0.967887 TTCGGCTAGACTGCAGCTCT 60.968 55.000 15.27 17.39 39.09 4.09
3759 3933 0.103937 ATTCGGCTAGACTGCAGCTC 59.896 55.000 15.27 10.79 39.09 4.09
3760 3934 1.403814 TATTCGGCTAGACTGCAGCT 58.596 50.000 15.27 14.40 39.09 4.24
3761 3935 2.225068 TTATTCGGCTAGACTGCAGC 57.775 50.000 15.27 6.85 38.35 5.25
3762 3936 3.521560 TGTTTATTCGGCTAGACTGCAG 58.478 45.455 13.48 13.48 34.04 4.41
3763 3937 3.056107 ACTGTTTATTCGGCTAGACTGCA 60.056 43.478 0.00 0.00 34.04 4.41
3764 3938 3.307242 CACTGTTTATTCGGCTAGACTGC 59.693 47.826 0.00 0.00 0.00 4.40
3765 3939 3.307242 GCACTGTTTATTCGGCTAGACTG 59.693 47.826 0.00 0.00 0.00 3.51
3766 3940 3.056107 TGCACTGTTTATTCGGCTAGACT 60.056 43.478 0.00 0.00 0.00 3.24
3767 3941 3.259064 TGCACTGTTTATTCGGCTAGAC 58.741 45.455 0.00 0.00 0.00 2.59
3768 3942 3.521560 CTGCACTGTTTATTCGGCTAGA 58.478 45.455 0.00 0.00 0.00 2.43
3769 3943 2.030946 GCTGCACTGTTTATTCGGCTAG 59.969 50.000 0.00 0.00 0.00 3.42
3770 3944 2.006888 GCTGCACTGTTTATTCGGCTA 58.993 47.619 0.00 0.00 0.00 3.93
3771 3945 0.804989 GCTGCACTGTTTATTCGGCT 59.195 50.000 0.00 0.00 0.00 5.52
3772 3946 0.804989 AGCTGCACTGTTTATTCGGC 59.195 50.000 1.02 0.00 0.00 5.54
3773 3947 2.532531 CAGCTGCACTGTTTATTCGG 57.467 50.000 0.00 0.00 41.86 4.30
3789 3963 1.135141 CCTCTCACAGCTCTGTACAGC 60.135 57.143 18.45 8.54 42.83 4.40
3790 3964 1.135141 GCCTCTCACAGCTCTGTACAG 60.135 57.143 17.17 17.17 42.83 2.74
3791 3965 0.891373 GCCTCTCACAGCTCTGTACA 59.109 55.000 1.79 0.00 42.83 2.90
3792 3966 0.174617 GGCCTCTCACAGCTCTGTAC 59.825 60.000 1.79 0.00 42.83 2.90
3793 3967 0.972983 GGGCCTCTCACAGCTCTGTA 60.973 60.000 0.84 0.00 42.83 2.74
3794 3968 2.289532 GGGCCTCTCACAGCTCTGT 61.290 63.158 0.84 0.00 46.17 3.41
3795 3969 2.583520 GGGCCTCTCACAGCTCTG 59.416 66.667 0.84 0.00 0.00 3.35
3796 3970 2.686835 GGGGCCTCTCACAGCTCT 60.687 66.667 0.84 0.00 0.00 4.09
3797 3971 4.154347 CGGGGCCTCTCACAGCTC 62.154 72.222 0.00 0.00 0.00 4.09
3799 3973 4.459089 GACGGGGCCTCTCACAGC 62.459 72.222 0.00 0.00 0.00 4.40
3800 3974 2.583441 TTGACGGGGCCTCTCACAG 61.583 63.158 0.00 0.00 0.00 3.66
3801 3975 2.525629 TTGACGGGGCCTCTCACA 60.526 61.111 0.00 0.00 0.00 3.58
3802 3976 2.047179 GTTGACGGGGCCTCTCAC 60.047 66.667 0.00 0.00 0.00 3.51
3803 3977 3.319198 GGTTGACGGGGCCTCTCA 61.319 66.667 0.00 0.01 0.00 3.27
3804 3978 2.593956 AAGGTTGACGGGGCCTCTC 61.594 63.158 0.00 0.00 0.00 3.20
3805 3979 2.529389 AAGGTTGACGGGGCCTCT 60.529 61.111 0.00 0.00 0.00 3.69
3806 3980 2.359975 CAAGGTTGACGGGGCCTC 60.360 66.667 0.84 0.00 0.00 4.70
3807 3981 2.763645 AACAAGGTTGACGGGGCCT 61.764 57.895 0.84 0.00 0.00 5.19
3808 3982 2.203437 AACAAGGTTGACGGGGCC 60.203 61.111 0.00 0.00 0.00 5.80
3809 3983 1.826487 ACAACAAGGTTGACGGGGC 60.826 57.895 15.35 0.00 0.00 5.80
3810 3984 0.464735 TCACAACAAGGTTGACGGGG 60.465 55.000 15.35 1.06 0.00 5.73
3811 3985 1.064952 GTTCACAACAAGGTTGACGGG 59.935 52.381 15.35 3.16 0.00 5.28
3812 3986 1.740585 TGTTCACAACAAGGTTGACGG 59.259 47.619 15.35 5.29 38.72 4.79
3813 3987 3.479505 TTGTTCACAACAAGGTTGACG 57.520 42.857 15.35 6.54 45.79 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.