AutoCloner

Multiple sequence alignment - TraesCS2B01G303700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G303700	chr2B	100.000	2159	0	0	1	2159	430232510	430230352	0.000000e+00	3988.0
1	TraesCS2B01G303700	chr2B	94.754	2135	92	13	27	2158	215847147	215849264	0.000000e+00	3304.0
2	TraesCS2B01G303700	chr2B	100.000	61	0	0	2657	2717	430229854	430229794	2.210000e-21	113.0
3	TraesCS2B01G303700	chr2B	94.643	56	3	0	2660	2715	430229733	430229788	1.340000e-13	87.9
4	TraesCS2B01G303700	chr1D	92.060	1990	131	15	27	2011	446419286	446421253	0.000000e+00	2774.0
5	TraesCS2B01G303700	chrUn	90.218	2157	149	33	27	2159	10399151	10401269	0.000000e+00	2758.0
6	TraesCS2B01G303700	chr3D	91.368	2039	135	20	27	2053	310406072	310408081	0.000000e+00	2752.0
7	TraesCS2B01G303700	chr3D	90.878	2017	151	21	27	2032	446922402	446924396	0.000000e+00	2675.0
8	TraesCS2B01G303700	chr7D	91.246	2022	141	22	27	2032	131689372	131691373	0.000000e+00	2721.0
9	TraesCS2B01G303700	chr6D	91.616	1992	131	23	27	2001	377212183	377214155	0.000000e+00	2721.0
10	TraesCS2B01G303700	chr6D	90.837	2019	142	24	27	2031	62141218	62143207	0.000000e+00	2663.0
11	TraesCS2B01G303700	chr2D	89.819	2151	166	33	27	2157	619853609	619855726	0.000000e+00	2710.0
12	TraesCS2B01G303700	chr4D	91.134	2019	143	22	30	2031	470196657	470194658	0.000000e+00	2704.0
13	TraesCS2B01G303700	chr1B	93.039	1494	82	11	643	2133	612424167	612425641	0.000000e+00	2163.0
14	TraesCS2B01G303700	chr1B	84.868	152	17	5	1948	2097	612425851	612425704	6.060000e-32	148.0
15	TraesCS2B01G303700	chr1B	92.683	41	3	0	1967	2007	612425601	612425641	2.920000e-05	60.2
16	TraesCS2B01G303700	chr4B	88.300	547	42	12	1615	2159	9634866	9635392	1.060000e-178	636.0
17	TraesCS2B01G303700	chr3B	89.286	56	6	0	2660	2715	732876039	732876094	1.350000e-08	71.3

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G303700	chr2B	430229794	430232510	2716	True	2050.5	3988	100.000	1	2717	2	chr2B.!!$R1	2716
1	TraesCS2B01G303700	chr2B	215847147	215849264	2117	False	3304.0	3304	94.754	27	2158	1	chr2B.!!$F1	2131
2	TraesCS2B01G303700	chr1D	446419286	446421253	1967	False	2774.0	2774	92.060	27	2011	1	chr1D.!!$F1	1984
3	TraesCS2B01G303700	chrUn	10399151	10401269	2118	False	2758.0	2758	90.218	27	2159	1	chrUn.!!$F1	2132
4	TraesCS2B01G303700	chr3D	310406072	310408081	2009	False	2752.0	2752	91.368	27	2053	1	chr3D.!!$F1	2026
5	TraesCS2B01G303700	chr3D	446922402	446924396	1994	False	2675.0	2675	90.878	27	2032	1	chr3D.!!$F2	2005
6	TraesCS2B01G303700	chr7D	131689372	131691373	2001	False	2721.0	2721	91.246	27	2032	1	chr7D.!!$F1	2005
7	TraesCS2B01G303700	chr6D	377212183	377214155	1972	False	2721.0	2721	91.616	27	2001	1	chr6D.!!$F2	1974
8	TraesCS2B01G303700	chr6D	62141218	62143207	1989	False	2663.0	2663	90.837	27	2031	1	chr6D.!!$F1	2004
9	TraesCS2B01G303700	chr2D	619853609	619855726	2117	False	2710.0	2710	89.819	27	2157	1	chr2D.!!$F1	2130
10	TraesCS2B01G303700	chr4D	470194658	470196657	1999	True	2704.0	2704	91.134	30	2031	1	chr4D.!!$R1	2001
11	TraesCS2B01G303700	chr1B	612424167	612425641	1474	False	1111.6	2163	92.861	643	2133	2	chr1B.!!$F1	1490
12	TraesCS2B01G303700	chr4B	9634866	9635392	526	False	636.0	636	88.300	1615	2159	1	chr4B.!!$F1	544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
347	348	0.027194	CTCGCATTTGATGACCGCAG	59.973	55.0	0.0	0.0	0.0	5.18	F
348	349	0.390998	TCGCATTTGATGACCGCAGA	60.391	50.0	0.0	0.0	0.0	4.26	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1577	1590	0.341258	TCTTGCCCTCTCCTCCTCAT	59.659	55.000	0.00	0.0	0.00	2.90	R
2108	2271	1.144057	GTCATGACCTACCGCCAGG	59.856	63.158	15.31	0.0	45.13	4.45	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
28	29	7.919385	ACCATGGGATATTTTCTAAAGCATT	57.081	32.000	18.09	0.00	0.00	3.56
50	51	7.095060	GCATTCTCAAGTACACTTTCATCAAGA	60.095	37.037	0.00	0.00	36.21	3.02
137	138	4.526970	TCCATTCAAGGTTCTAGATTGGC	58.473	43.478	0.00	0.00	34.45	4.52
160	161	3.093278	CATCAAGCGCGGAAGTCC	58.907	61.111	8.83	0.00	0.00	3.85
294	295	0.031449	ATGAAAAACCGTTGGTGCCG	59.969	50.000	0.00	0.00	35.34	5.69
347	348	0.027194	CTCGCATTTGATGACCGCAG	59.973	55.000	0.00	0.00	0.00	5.18
348	349	0.390998	TCGCATTTGATGACCGCAGA	60.391	50.000	0.00	0.00	0.00	4.26
465	466	1.089920	CCTTTCCTTGATGCCTCACG	58.910	55.000	0.00	0.00	0.00	4.35
623	624	2.024655	AGTGGTCATTTCATGGAGGCAT	60.025	45.455	0.00	0.00	0.00	4.40
685	686	2.734606	CAACGTTAGGAGATGCACGAAA	59.265	45.455	0.00	0.00	36.48	3.46
883	885	1.192428	GTGGATCCGGTGGTTCTAGT	58.808	55.000	7.39	0.00	0.00	2.57
994	1004	8.518430	TGTACATGTGTTGATATATTTGCCTT	57.482	30.769	9.11	0.00	0.00	4.35
1124	1137	0.518636	CACAAGTGGGAGAACGCATG	59.481	55.000	0.00	0.00	40.82	4.06
1284	1297	0.391661	ATCGTGCGCTTCCAACTCAT	60.392	50.000	9.73	0.00	0.00	2.90
1660	1673	1.546029	GTGACAAGAAGGGGAAATGGC	59.454	52.381	0.00	0.00	0.00	4.40
1718	1731	3.132289	ACTCGTCATGTAACCGGATGAAT	59.868	43.478	9.46	0.00	30.45	2.57
1786	1799	5.706833	AGAATGCACATGTCATGAACTTGTA	59.293	36.000	19.77	7.07	42.58	2.41
1795	1819	7.118825	ACATGTCATGAACTTGTAGTGAATGAG	59.881	37.037	19.77	0.00	42.63	2.90
1885	1909	5.532032	TCAGCAATTTCTGTGATTTGTCTGA	59.468	36.000	4.99	0.00	35.63	3.27
1932	1973	0.955919	GAGGGGCAAAACAGAGGACG	60.956	60.000	0.00	0.00	0.00	4.79
1965	2125	3.686016	CTCTGTTTTTAGCTTAGCCCCA	58.314	45.455	0.00	0.00	0.00	4.96
2011	2171	2.297895	TGCTTGACCCTACCGCCAT	61.298	57.895	0.00	0.00	0.00	4.40
2102	2265	1.474332	GGACCCTACCGTCACAACCA	61.474	60.000	0.00	0.00	34.24	3.67
2103	2266	0.037605	GACCCTACCGTCACAACCAG	60.038	60.000	0.00	0.00	32.74	4.00
2104	2267	0.470456	ACCCTACCGTCACAACCAGA	60.470	55.000	0.00	0.00	0.00	3.86
2105	2268	0.246635	CCCTACCGTCACAACCAGAG	59.753	60.000	0.00	0.00	0.00	3.35
2106	2269	0.246635	CCTACCGTCACAACCAGAGG	59.753	60.000	0.00	0.00	0.00	3.69
2107	2270	0.389948	CTACCGTCACAACCAGAGGC	60.390	60.000	0.00	0.00	0.00	4.70
2108	2271	1.823169	TACCGTCACAACCAGAGGCC	61.823	60.000	0.00	0.00	0.00	5.19
2137	2302	1.600107	GTCATGACCCTACCGCCAA	59.400	57.895	15.31	0.00	0.00	4.52
2680	2845	6.081693	GCTAACCTGTTGTAATGGTAAAACG	58.918	40.000	0.00	0.00	30.90	3.60
2681	2846	6.073112	GCTAACCTGTTGTAATGGTAAAACGA	60.073	38.462	0.00	0.00	30.90	3.85
2682	2847	6.696441	AACCTGTTGTAATGGTAAAACGAA	57.304	33.333	0.00	0.00	30.90	3.85
2683	2848	6.308371	ACCTGTTGTAATGGTAAAACGAAG	57.692	37.500	0.00	0.00	30.90	3.79
2684	2849	5.239963	ACCTGTTGTAATGGTAAAACGAAGG	59.760	40.000	0.00	0.00	30.90	3.46
2685	2850	5.335348	CCTGTTGTAATGGTAAAACGAAGGG	60.335	44.000	0.00	0.00	30.90	3.95
2686	2851	4.023021	TGTTGTAATGGTAAAACGAAGGGC	60.023	41.667	0.00	0.00	30.90	5.19
2687	2852	3.083293	TGTAATGGTAAAACGAAGGGCC	58.917	45.455	0.00	0.00	0.00	5.80
2688	2853	2.597578	AATGGTAAAACGAAGGGCCT	57.402	45.000	0.00	0.00	0.00	5.19
2689	2854	2.597578	ATGGTAAAACGAAGGGCCTT	57.402	45.000	21.09	21.09	0.00	4.35
2690	2855	1.611519	TGGTAAAACGAAGGGCCTTG	58.388	50.000	26.47	17.89	0.00	3.61
2691	2856	0.885879	GGTAAAACGAAGGGCCTTGG	59.114	55.000	26.47	25.44	0.00	3.61
2692	2857	0.242825	GTAAAACGAAGGGCCTTGGC	59.757	55.000	26.47	9.43	0.00	4.52
2693	2858	1.238625	TAAAACGAAGGGCCTTGGCG	61.239	55.000	26.47	23.62	0.00	5.69
2696	2861	4.090588	CGAAGGGCCTTGGCGGTA	62.091	66.667	26.47	0.00	34.25	4.02
2697	2862	2.353573	GAAGGGCCTTGGCGGTAA	59.646	61.111	26.47	0.00	34.25	2.85
2698	2863	1.749258	GAAGGGCCTTGGCGGTAAG	60.749	63.158	26.47	0.00	34.25	2.34
2700	2865	4.815108	GGGCCTTGGCGGTAAGGG	62.815	72.222	0.84	0.00	45.91	3.95
2701	2866	3.723922	GGCCTTGGCGGTAAGGGA	61.724	66.667	13.00	0.00	45.91	4.20
2702	2867	2.124695	GCCTTGGCGGTAAGGGAG	60.125	66.667	13.00	0.00	45.91	4.30
2703	2868	2.666098	GCCTTGGCGGTAAGGGAGA	61.666	63.158	13.00	0.00	45.91	3.71
2704	2869	1.221021	CCTTGGCGGTAAGGGAGAC	59.779	63.158	5.40	0.00	42.84	3.36
2716	2881	2.682494	GGAGACCCTACCGCCACA	60.682	66.667	0.00	0.00	0.00	4.17

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	8.859090	TGCTTTAGAAAATATCCCATGGTAATG	58.141	33.333	11.73	3.22	0.00	1.90
1	2	9.605951	ATGCTTTAGAAAATATCCCATGGTAAT	57.394	29.630	11.73	6.55	0.00	1.89
2	3	9.432982	AATGCTTTAGAAAATATCCCATGGTAA	57.567	29.630	11.73	0.00	0.00	2.85
3	4	9.077885	GAATGCTTTAGAAAATATCCCATGGTA	57.922	33.333	11.73	0.00	0.00	3.25
4	5	7.786464	AGAATGCTTTAGAAAATATCCCATGGT	59.214	33.333	11.73	0.00	0.00	3.55
5	6	8.186709	AGAATGCTTTAGAAAATATCCCATGG	57.813	34.615	4.14	4.14	0.00	3.66
6	7	8.853126	TGAGAATGCTTTAGAAAATATCCCATG	58.147	33.333	0.00	0.00	0.00	3.66
7	8	9.425248	TTGAGAATGCTTTAGAAAATATCCCAT	57.575	29.630	0.00	0.00	0.00	4.00
8	9	8.821686	TTGAGAATGCTTTAGAAAATATCCCA	57.178	30.769	0.00	0.00	0.00	4.37
9	10	8.907885	ACTTGAGAATGCTTTAGAAAATATCCC	58.092	33.333	0.00	0.00	0.00	3.85
14	15	9.289782	AGTGTACTTGAGAATGCTTTAGAAAAT	57.710	29.630	0.00	0.00	0.00	1.82
15	16	8.677148	AGTGTACTTGAGAATGCTTTAGAAAA	57.323	30.769	0.00	0.00	0.00	2.29
16	17	8.677148	AAGTGTACTTGAGAATGCTTTAGAAA	57.323	30.769	0.00	0.00	34.38	2.52
17	18	8.677148	AAAGTGTACTTGAGAATGCTTTAGAA	57.323	30.769	0.00	0.00	36.12	2.10
18	19	7.931407	TGAAAGTGTACTTGAGAATGCTTTAGA	59.069	33.333	0.00	0.00	36.12	2.10
19	20	8.087982	TGAAAGTGTACTTGAGAATGCTTTAG	57.912	34.615	0.00	0.00	36.12	1.85
20	21	8.621532	ATGAAAGTGTACTTGAGAATGCTTTA	57.378	30.769	0.00	0.00	36.12	1.85
21	22	6.942532	TGAAAGTGTACTTGAGAATGCTTT	57.057	33.333	0.00	0.00	36.12	3.51
22	23	6.712095	TGATGAAAGTGTACTTGAGAATGCTT	59.288	34.615	0.00	0.00	36.12	3.91
23	24	6.233434	TGATGAAAGTGTACTTGAGAATGCT	58.767	36.000	0.00	0.00	36.12	3.79
24	25	6.486253	TGATGAAAGTGTACTTGAGAATGC	57.514	37.500	0.00	0.00	36.12	3.56
25	26	8.315391	TCTTGATGAAAGTGTACTTGAGAATG	57.685	34.615	0.00	0.00	37.18	2.67
28	29	7.670364	TGATCTTGATGAAAGTGTACTTGAGA	58.330	34.615	0.00	0.00	37.18	3.27
50	51	5.401531	TGCTTTAGGAAGTACTCGTTGAT	57.598	39.130	0.00	0.00	35.25	2.57
129	130	2.424601	GCTTGATGCAACAGCCAATCTA	59.575	45.455	0.00	0.00	42.31	1.98
137	138	2.186350	TTCCGCGCTTGATGCAACAG	62.186	55.000	5.56	0.00	43.06	3.16
247	248	3.448686	CTCGTAAGCAACTCCACCATAG	58.551	50.000	0.00	0.00	37.18	2.23
347	348	2.851104	CACGTTTCTCGCCCGTTC	59.149	61.111	0.00	0.00	44.19	3.95
348	349	3.343421	GCACGTTTCTCGCCCGTT	61.343	61.111	0.00	0.00	44.19	4.44
390	391	3.023119	TCCAATGTGAACTTGTGCAACT	58.977	40.909	0.00	0.00	38.04	3.16
398	399	4.202010	CCTTGTTCGTTCCAATGTGAACTT	60.202	41.667	11.02	0.00	41.95	2.66
465	466	1.144057	CCGTGATACTCAGGCCACC	59.856	63.158	5.01	0.00	31.43	4.61
623	624	1.134068	TCCACAATTGTTGGTGTCCGA	60.134	47.619	8.77	0.00	33.19	4.55
685	686	2.897326	GCCCATGTTGGTTCTAGGTTTT	59.103	45.455	0.00	0.00	35.17	2.43
790	792	0.683504	GGCTAGTCCTTCCTCCACGA	60.684	60.000	0.00	0.00	0.00	4.35
883	885	1.105457	CCCTATCAACCCGACGTGTA	58.895	55.000	0.00	0.00	0.00	2.90
1124	1137	3.208747	TCTCCTTCACCTTGTCCAAAC	57.791	47.619	0.00	0.00	0.00	2.93
1284	1297	1.298340	CGGTGGTTGGTCATAGGCA	59.702	57.895	0.00	0.00	0.00	4.75
1541	1554	2.363147	GTGCCCTCTCCTCCTCGT	60.363	66.667	0.00	0.00	0.00	4.18
1577	1590	0.341258	TCTTGCCCTCTCCTCCTCAT	59.659	55.000	0.00	0.00	0.00	2.90
1660	1673	2.483188	GCTTTACTGAGTCATACGGGGG	60.483	54.545	0.00	0.00	0.00	5.40
1718	1731	6.795144	AGTTCATGATAAATTTGGCATGGA	57.205	33.333	23.43	17.50	38.82	3.41
1770	1783	7.118825	ACTCATTCACTACAAGTTCATGACATG	59.881	37.037	9.28	9.28	33.31	3.21
1776	1789	6.294176	GGCAAACTCATTCACTACAAGTTCAT	60.294	38.462	0.00	0.00	30.23	2.57
1786	1799	4.942761	ACAAATGGCAAACTCATTCACT	57.057	36.364	0.00	0.00	34.15	3.41
1795	1819	7.076983	CACCAAATTCAATACAAATGGCAAAC	58.923	34.615	0.00	0.00	0.00	2.93
1885	1909	9.160496	TCTCAGCACAACAATTAACAAAAATTT	57.840	25.926	0.00	0.00	0.00	1.82
1932	1973	5.683302	GCTAAAAACAGAGCAAAACAGAGTC	59.317	40.000	0.00	0.00	38.62	3.36
2094	2257	3.160585	CAGGGCCTCTGGTTGTGA	58.839	61.111	0.95	0.00	39.76	3.58
2106	2269	3.480133	ATGACCTACCGCCAGGGC	61.480	66.667	0.00	0.00	44.94	5.19
2107	2270	2.063979	TCATGACCTACCGCCAGGG	61.064	63.158	0.00	0.00	43.47	4.45
2108	2271	1.144057	GTCATGACCTACCGCCAGG	59.856	63.158	15.31	0.00	45.13	4.45
2656	2821	6.073112	TCGTTTTACCATTACAACAGGTTAGC	60.073	38.462	0.00	0.00	36.87	3.09
2657	2822	7.424227	TCGTTTTACCATTACAACAGGTTAG	57.576	36.000	0.00	0.00	36.87	2.34
2658	2823	7.041235	CCTTCGTTTTACCATTACAACAGGTTA	60.041	37.037	0.00	0.00	36.87	2.85
2659	2824	6.238814	CCTTCGTTTTACCATTACAACAGGTT	60.239	38.462	0.00	0.00	36.87	3.50
2660	2825	5.239963	CCTTCGTTTTACCATTACAACAGGT	59.760	40.000	0.00	0.00	39.41	4.00
2661	2826	5.335348	CCCTTCGTTTTACCATTACAACAGG	60.335	44.000	0.00	0.00	0.00	4.00
2662	2827	5.695818	CCCTTCGTTTTACCATTACAACAG	58.304	41.667	0.00	0.00	0.00	3.16
2663	2828	4.023021	GCCCTTCGTTTTACCATTACAACA	60.023	41.667	0.00	0.00	0.00	3.33
2664	2829	4.478699	GCCCTTCGTTTTACCATTACAAC	58.521	43.478	0.00	0.00	0.00	3.32
2665	2830	3.506844	GGCCCTTCGTTTTACCATTACAA	59.493	43.478	0.00	0.00	0.00	2.41
2666	2831	3.083293	GGCCCTTCGTTTTACCATTACA	58.917	45.455	0.00	0.00	0.00	2.41
2667	2832	3.349927	AGGCCCTTCGTTTTACCATTAC	58.650	45.455	0.00	0.00	0.00	1.89
2668	2833	3.724732	AGGCCCTTCGTTTTACCATTA	57.275	42.857	0.00	0.00	0.00	1.90
2669	2834	2.560981	CAAGGCCCTTCGTTTTACCATT	59.439	45.455	0.00	0.00	0.00	3.16
2670	2835	2.167662	CAAGGCCCTTCGTTTTACCAT	58.832	47.619	0.00	0.00	0.00	3.55
2671	2836	1.611519	CAAGGCCCTTCGTTTTACCA	58.388	50.000	0.00	0.00	0.00	3.25
2672	2837	0.885879	CCAAGGCCCTTCGTTTTACC	59.114	55.000	0.00	0.00	0.00	2.85
2673	2838	0.242825	GCCAAGGCCCTTCGTTTTAC	59.757	55.000	0.00	0.00	34.56	2.01
2674	2839	1.238625	CGCCAAGGCCCTTCGTTTTA	61.239	55.000	5.34	0.00	37.98	1.52
2675	2840	2.561037	CGCCAAGGCCCTTCGTTTT	61.561	57.895	5.34	0.00	37.98	2.43
2676	2841	2.983592	CGCCAAGGCCCTTCGTTT	60.984	61.111	5.34	0.00	37.98	3.60
2679	2844	3.615509	TTACCGCCAAGGCCCTTCG	62.616	63.158	5.34	0.00	46.52	3.79
2680	2845	1.749258	CTTACCGCCAAGGCCCTTC	60.749	63.158	5.34	0.00	46.52	3.46
2681	2846	2.355115	CTTACCGCCAAGGCCCTT	59.645	61.111	5.34	0.00	46.52	3.95
2682	2847	3.728373	CCTTACCGCCAAGGCCCT	61.728	66.667	5.34	0.00	46.52	5.19
2683	2848	4.815108	CCCTTACCGCCAAGGCCC	62.815	72.222	5.34	0.00	46.52	5.80
2684	2849	3.699134	CTCCCTTACCGCCAAGGCC	62.699	68.421	5.34	0.00	46.52	5.19
2685	2850	2.124695	CTCCCTTACCGCCAAGGC	60.125	66.667	0.00	0.00	46.52	4.35
2686	2851	1.221021	GTCTCCCTTACCGCCAAGG	59.779	63.158	6.34	6.34	44.11	3.61
2687	2852	1.221021	GGTCTCCCTTACCGCCAAG	59.779	63.158	0.00	0.00	0.00	3.61
2688	2853	2.295602	GGGTCTCCCTTACCGCCAA	61.296	63.158	0.00	0.00	41.34	4.52
2689	2854	2.686106	GGGTCTCCCTTACCGCCA	60.686	66.667	0.00	0.00	41.34	5.69
2698	2863	3.468140	GTGGCGGTAGGGTCTCCC	61.468	72.222	0.00	0.00	45.90	4.30
2699	2864	2.682494	TGTGGCGGTAGGGTCTCC	60.682	66.667	0.00	0.00	0.00	3.71

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.