Multiple sequence alignment - TraesCS2B01G303400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G303400 chr2B 100.000 2306 0 0 1 2306 429479255 429481560 0 4259
1 TraesCS2B01G303400 chr2D 91.039 2310 190 13 1 2303 284567098 284569397 0 3103
2 TraesCS2B01G303400 chr1A 91.143 2292 187 15 1 2285 296930202 296927920 0 3094
3 TraesCS2B01G303400 chr3D 90.717 2316 192 19 1 2306 584823378 584821076 0 3064
4 TraesCS2B01G303400 chr3D 90.480 2311 200 16 1 2303 57186342 57188640 0 3031
5 TraesCS2B01G303400 chr5D 90.484 2312 201 18 1 2303 361206448 361208749 0 3033
6 TraesCS2B01G303400 chr5D 90.186 2313 202 19 1 2303 397071679 397069382 0 2990
7 TraesCS2B01G303400 chr5D 89.451 2313 224 18 1 2303 214552150 214554452 0 2902
8 TraesCS2B01G303400 chr1B 90.394 2311 203 15 1 2303 637509814 637512113 0 3020
9 TraesCS2B01G303400 chr7A 89.810 2316 211 21 1 2306 88434945 88432645 0 2946


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G303400 chr2B 429479255 429481560 2305 False 4259 4259 100.000 1 2306 1 chr2B.!!$F1 2305
1 TraesCS2B01G303400 chr2D 284567098 284569397 2299 False 3103 3103 91.039 1 2303 1 chr2D.!!$F1 2302
2 TraesCS2B01G303400 chr1A 296927920 296930202 2282 True 3094 3094 91.143 1 2285 1 chr1A.!!$R1 2284
3 TraesCS2B01G303400 chr3D 584821076 584823378 2302 True 3064 3064 90.717 1 2306 1 chr3D.!!$R1 2305
4 TraesCS2B01G303400 chr3D 57186342 57188640 2298 False 3031 3031 90.480 1 2303 1 chr3D.!!$F1 2302
5 TraesCS2B01G303400 chr5D 361206448 361208749 2301 False 3033 3033 90.484 1 2303 1 chr5D.!!$F2 2302
6 TraesCS2B01G303400 chr5D 397069382 397071679 2297 True 2990 2990 90.186 1 2303 1 chr5D.!!$R1 2302
7 TraesCS2B01G303400 chr5D 214552150 214554452 2302 False 2902 2902 89.451 1 2303 1 chr5D.!!$F1 2302
8 TraesCS2B01G303400 chr1B 637509814 637512113 2299 False 3020 3020 90.394 1 2303 1 chr1B.!!$F1 2302
9 TraesCS2B01G303400 chr7A 88432645 88434945 2300 True 2946 2946 89.810 1 2306 1 chr7A.!!$R1 2305

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
361 367 0.034059 CCACGTTGAACAGCCTCTCT 59.966 55.0 0.0 0.0 0.0 3.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1443 1451 0.106708 TATGAGTGCTGCCCGAATCC 59.893 55.0 0.0 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 78 5.280654 TCAAGAAAGGCAAGCAGAAAAAT 57.719 34.783 0.00 0.00 0.00 1.82
77 80 6.815089 TCAAGAAAGGCAAGCAGAAAAATAA 58.185 32.000 0.00 0.00 0.00 1.40
80 85 5.305386 AGAAAGGCAAGCAGAAAAATAACCT 59.695 36.000 0.00 0.00 0.00 3.50
82 87 6.857437 AAGGCAAGCAGAAAAATAACCTAT 57.143 33.333 0.00 0.00 0.00 2.57
88 93 7.281999 GCAAGCAGAAAAATAACCTATCTCTCT 59.718 37.037 0.00 0.00 0.00 3.10
93 98 7.439655 CAGAAAAATAACCTATCTCTCTTCCCG 59.560 40.741 0.00 0.00 0.00 5.14
96 101 2.830651 ACCTATCTCTCTTCCCGTGT 57.169 50.000 0.00 0.00 0.00 4.49
133 139 2.038975 TCCTCACCTCCTTCCCCG 59.961 66.667 0.00 0.00 0.00 5.73
173 179 3.023735 GCCCTCATCCCCCAACCT 61.024 66.667 0.00 0.00 0.00 3.50
175 181 1.619363 CCCTCATCCCCCAACCTCA 60.619 63.158 0.00 0.00 0.00 3.86
191 197 1.340248 CCTCACACGACTACAACCTGT 59.660 52.381 0.00 0.00 0.00 4.00
193 199 1.067974 TCACACGACTACAACCTGTGG 59.932 52.381 0.00 0.00 34.28 4.17
194 200 1.117150 ACACGACTACAACCTGTGGT 58.883 50.000 0.00 0.00 44.95 4.16
201 207 2.039879 ACTACAACCTGTGGTCCAATCC 59.960 50.000 0.00 0.00 37.54 3.01
203 209 1.202927 ACAACCTGTGGTCCAATCCAG 60.203 52.381 0.00 0.00 38.23 3.86
205 211 1.379044 CCTGTGGTCCAATCCAGCC 60.379 63.158 0.00 0.00 38.23 4.85
206 212 1.379044 CTGTGGTCCAATCCAGCCC 60.379 63.158 0.00 0.00 38.23 5.19
207 213 2.141011 CTGTGGTCCAATCCAGCCCA 62.141 60.000 0.00 0.00 38.23 5.36
208 214 1.076549 GTGGTCCAATCCAGCCCAA 59.923 57.895 0.00 0.00 38.23 4.12
209 215 0.967380 GTGGTCCAATCCAGCCCAAG 60.967 60.000 0.00 0.00 38.23 3.61
210 216 2.054453 GGTCCAATCCAGCCCAAGC 61.054 63.158 0.00 0.00 40.32 4.01
256 262 3.479203 TCGATCCCAGCGGCCATT 61.479 61.111 2.24 0.00 0.00 3.16
262 268 2.045045 CCAGCGGCCATTTCTCCA 60.045 61.111 2.24 0.00 0.00 3.86
297 303 0.902531 CCTCTGCCGAAAACCCTAGA 59.097 55.000 0.00 0.00 0.00 2.43
301 307 2.635915 TCTGCCGAAAACCCTAGAAGAA 59.364 45.455 0.00 0.00 0.00 2.52
331 337 2.743664 CAAACAGCACGAGGATCATGAA 59.256 45.455 0.00 0.00 33.17 2.57
332 338 2.015736 ACAGCACGAGGATCATGAAC 57.984 50.000 0.00 0.00 33.17 3.18
361 367 0.034059 CCACGTTGAACAGCCTCTCT 59.966 55.000 0.00 0.00 0.00 3.10
362 368 1.272490 CCACGTTGAACAGCCTCTCTA 59.728 52.381 0.00 0.00 0.00 2.43
437 444 1.669760 ATCGCCGAGACGCCAAAAA 60.670 52.632 0.00 0.00 0.00 1.94
450 457 0.762461 CCAAAAACCTCCAGGGCCAA 60.762 55.000 6.18 0.00 40.27 4.52
465 472 3.625232 CAACTGGTGGACACGTCG 58.375 61.111 0.00 0.00 0.00 5.12
535 543 1.303317 ACGCCTCAATTGGGTGGTC 60.303 57.895 22.49 11.47 38.54 4.02
536 544 1.002134 CGCCTCAATTGGGTGGTCT 60.002 57.895 15.07 0.00 0.00 3.85
544 552 4.631740 TGGGTGGTCTCGGGCTCA 62.632 66.667 0.00 0.00 0.00 4.26
545 553 4.083862 GGGTGGTCTCGGGCTCAC 62.084 72.222 0.07 0.07 0.00 3.51
547 555 3.681835 GTGGTCTCGGGCTCACGT 61.682 66.667 0.00 0.00 34.94 4.49
550 558 4.436998 GTCTCGGGCTCACGTGGG 62.437 72.222 17.00 14.73 34.94 4.61
558 566 1.139947 GCTCACGTGGGCTCTAGAC 59.860 63.158 32.80 1.67 0.00 2.59
560 568 1.303074 TCACGTGGGCTCTAGACGT 60.303 57.895 17.00 1.07 46.78 4.34
640 648 5.019470 AGATTGATTTTCCCCTCTTTGACC 58.981 41.667 0.00 0.00 0.00 4.02
701 709 2.047274 CTTCCTCGGGCAGCGAAA 60.047 61.111 0.00 0.00 0.00 3.46
732 740 2.017559 ATAAGACGTGGCTCGCCTCC 62.018 60.000 9.11 0.00 44.19 4.30
745 753 1.612442 GCCTCCTACCACCTCACCA 60.612 63.158 0.00 0.00 0.00 4.17
780 788 1.327690 GGTATGGCCACCTCGAGACA 61.328 60.000 15.71 0.00 35.55 3.41
838 846 0.687354 ACTGATCGCCAACCACTTCT 59.313 50.000 0.00 0.00 0.00 2.85
846 854 1.071471 CAACCACTTCTGACCGCCT 59.929 57.895 0.00 0.00 0.00 5.52
848 856 1.066143 CAACCACTTCTGACCGCCTAT 60.066 52.381 0.00 0.00 0.00 2.57
918 926 1.135199 GTGACGGAATACTCCAAGCGA 60.135 52.381 0.00 0.00 42.58 4.93
969 977 2.026157 GCCGATGACGATGAGCGA 59.974 61.111 0.00 0.00 44.57 4.93
1071 1079 5.241403 TGGACTTAGCCATCTCTTTTGAA 57.759 39.130 0.00 0.00 31.66 2.69
1085 1093 4.069304 TCTTTTGAACACCTCAATACCGG 58.931 43.478 0.00 0.00 43.64 5.28
1090 1098 1.813753 CACCTCAATACCGGCACCG 60.814 63.158 0.00 1.02 39.44 4.94
1161 1169 0.974010 CACCTACTCCGGCCTTACCA 60.974 60.000 0.00 0.00 39.03 3.25
1165 1173 0.040058 TACTCCGGCCTTACCAGACA 59.960 55.000 0.00 0.00 39.03 3.41
1209 1217 1.497991 TCTTCAAAAGACTCACGCCG 58.502 50.000 0.00 0.00 31.20 6.46
1245 1253 2.885861 CGCGCTAAGGGTCTCTGT 59.114 61.111 5.56 0.00 0.00 3.41
1303 1311 4.083484 GCTACAAACGGCTGTTCTACATTT 60.083 41.667 12.25 0.00 37.31 2.32
1314 1322 3.131577 TGTTCTACATTTAGTCCGCCGAT 59.868 43.478 0.00 0.00 0.00 4.18
1359 1367 0.250234 TCCAGGAGGCACAAATCTCG 59.750 55.000 0.00 0.00 33.74 4.04
1419 1427 2.102357 GTCGCTCTTCGCATCGGA 59.898 61.111 0.00 0.00 39.08 4.55
1443 1451 0.445436 GTGACTTGATCGCCTTGCTG 59.555 55.000 0.00 0.00 0.00 4.41
1449 1457 0.811219 TGATCGCCTTGCTGGATTCG 60.811 55.000 0.49 0.00 38.35 3.34
1488 1496 3.114616 CACGAAGAGCTGGCCACG 61.115 66.667 0.00 5.27 0.00 4.94
1599 1608 2.754472 CCGCGATCACCATTGATAAGA 58.246 47.619 8.23 0.00 42.95 2.10
1631 1640 2.029623 GTTGATCTGCATGCCATTCCT 58.970 47.619 16.68 0.00 0.00 3.36
1664 1673 0.957395 ACATCGTCCTCGGTACACGT 60.957 55.000 0.00 0.00 44.69 4.49
1693 1702 0.618458 ACGCTTGGGCCAATTCTCTA 59.382 50.000 21.25 0.00 34.44 2.43
1697 1706 2.924421 CTTGGGCCAATTCTCTAGGAC 58.076 52.381 21.25 0.00 0.00 3.85
1785 1794 3.480133 GACGGCCTGCCCACCTAT 61.480 66.667 0.00 0.00 0.00 2.57
1793 1802 0.106708 CTGCCCACCTATATGCGTGT 59.893 55.000 0.00 0.00 0.00 4.49
1820 1829 0.474660 AGGACCTTCTGGACAGCCTT 60.475 55.000 0.00 0.00 37.04 4.35
1853 1862 1.740296 CGATGTTTTCGCCGACCCT 60.740 57.895 0.00 0.00 41.69 4.34
1855 1864 1.366854 GATGTTTTCGCCGACCCTCC 61.367 60.000 0.00 0.00 0.00 4.30
2012 2021 0.386113 GTGGTCTGATCCGTCCTAGC 59.614 60.000 2.47 0.00 0.00 3.42
2018 2027 1.611491 CTGATCCGTCCTAGCTCTTCC 59.389 57.143 0.00 0.00 0.00 3.46
2034 2043 0.040351 TTCCGCATTTTCATCCCCCA 59.960 50.000 0.00 0.00 0.00 4.96
2046 2055 1.344763 CATCCCCCATTCTACTCGTCC 59.655 57.143 0.00 0.00 0.00 4.79
2132 2141 3.568430 AGGACAAGTTTTCAATTCCCGTC 59.432 43.478 0.00 0.00 0.00 4.79
2156 2165 5.651530 GTCGATGAACTTCTGGATGAACTA 58.348 41.667 0.00 0.00 0.00 2.24
2190 2200 4.787598 CTTTTTCACCAAACTGGATCTCG 58.212 43.478 0.00 0.00 40.96 4.04
2229 2239 2.842058 GGATGGCCCCTGAGGATG 59.158 66.667 0.00 0.00 38.24 3.51
2239 2249 1.209019 CCCTGAGGATGTCCACAAGAG 59.791 57.143 0.00 0.00 36.20 2.85
2240 2250 2.182827 CCTGAGGATGTCCACAAGAGA 58.817 52.381 0.00 0.00 36.20 3.10
2267 2277 1.028868 GCACACATGAGGGCCTCTTC 61.029 60.000 32.28 9.80 0.00 2.87
2288 2298 1.541588 GAGTTTGTGGTGATGGCCTTC 59.458 52.381 11.69 11.69 0.00 3.46
2290 2300 1.523154 TTTGTGGTGATGGCCTTCGC 61.523 55.000 21.00 21.00 0.00 4.70
2297 2307 0.960364 TGATGGCCTTCGCTTTGACC 60.960 55.000 13.54 0.00 34.44 4.02
2303 2313 0.883833 CCTTCGCTTTGACCAATGCT 59.116 50.000 15.44 0.00 38.75 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 4.510038 TTTCTGCTTGCCTTTCTTGATC 57.490 40.909 0.00 0.00 0.00 2.92
57 58 5.541845 AGGTTATTTTTCTGCTTGCCTTTC 58.458 37.500 0.00 0.00 0.00 2.62
61 62 6.319911 AGAGATAGGTTATTTTTCTGCTTGCC 59.680 38.462 0.00 0.00 0.00 4.52
75 78 4.246712 ACACGGGAAGAGAGATAGGTTA 57.753 45.455 0.00 0.00 0.00 2.85
77 80 2.830651 ACACGGGAAGAGAGATAGGT 57.169 50.000 0.00 0.00 0.00 3.08
80 85 3.024547 CAGGAACACGGGAAGAGAGATA 58.975 50.000 0.00 0.00 0.00 1.98
82 87 1.257743 CAGGAACACGGGAAGAGAGA 58.742 55.000 0.00 0.00 0.00 3.10
124 130 0.398098 GACCTATGGTCGGGGAAGGA 60.398 60.000 0.67 0.00 43.14 3.36
162 168 1.537889 TCGTGTGAGGTTGGGGGAT 60.538 57.895 0.00 0.00 0.00 3.85
166 172 0.677288 TGTAGTCGTGTGAGGTTGGG 59.323 55.000 0.00 0.00 0.00 4.12
169 175 2.037144 AGGTTGTAGTCGTGTGAGGTT 58.963 47.619 0.00 0.00 0.00 3.50
175 181 1.068127 GACCACAGGTTGTAGTCGTGT 59.932 52.381 0.00 0.00 35.25 4.49
191 197 1.383799 CTTGGGCTGGATTGGACCA 59.616 57.895 0.00 0.00 40.59 4.02
193 199 2.054453 GGCTTGGGCTGGATTGGAC 61.054 63.158 0.00 0.00 38.73 4.02
194 200 2.360191 GGCTTGGGCTGGATTGGA 59.640 61.111 0.00 0.00 38.73 3.53
195 201 2.761213 GGGCTTGGGCTGGATTGG 60.761 66.667 0.00 0.00 38.73 3.16
201 207 4.641645 TGTCACGGGCTTGGGCTG 62.642 66.667 0.00 0.00 40.49 4.85
203 209 3.670377 GTTGTCACGGGCTTGGGC 61.670 66.667 0.00 0.00 37.82 5.36
205 211 1.654220 CAAGTTGTCACGGGCTTGG 59.346 57.895 0.00 0.00 35.87 3.61
206 212 1.101049 ACCAAGTTGTCACGGGCTTG 61.101 55.000 1.45 0.00 38.33 4.01
207 213 0.470766 TACCAAGTTGTCACGGGCTT 59.529 50.000 1.45 0.00 0.00 4.35
208 214 0.690762 ATACCAAGTTGTCACGGGCT 59.309 50.000 1.45 0.00 0.00 5.19
209 215 1.084289 GATACCAAGTTGTCACGGGC 58.916 55.000 1.45 0.00 0.00 6.13
210 216 2.346803 CTGATACCAAGTTGTCACGGG 58.653 52.381 1.45 0.00 0.00 5.28
287 293 2.298163 TCGCGAGTTCTTCTAGGGTTTT 59.702 45.455 3.71 0.00 34.45 2.43
297 303 1.217882 CTGTTTGGTCGCGAGTTCTT 58.782 50.000 10.24 0.00 0.00 2.52
301 307 2.108157 TGCTGTTTGGTCGCGAGT 59.892 55.556 10.24 0.00 0.00 4.18
346 352 3.963428 TCCTTAGAGAGGCTGTTCAAC 57.037 47.619 0.00 0.00 45.87 3.18
361 367 2.485835 CCGAGTGGTGTGGTTTTCCTTA 60.486 50.000 0.00 0.00 41.38 2.69
362 368 1.675552 CGAGTGGTGTGGTTTTCCTT 58.324 50.000 0.00 0.00 41.38 3.36
367 373 0.179056 CTGTCCGAGTGGTGTGGTTT 60.179 55.000 0.00 0.00 36.30 3.27
450 457 3.499929 CTGCGACGTGTCCACCAGT 62.500 63.158 0.00 0.00 0.00 4.00
483 490 2.045926 CGAAGGAGGGCCAGGTTG 60.046 66.667 6.18 0.00 36.29 3.77
503 510 2.669240 GCGTGCCCTTACCTTCCT 59.331 61.111 0.00 0.00 0.00 3.36
510 517 0.679640 CCAATTGAGGCGTGCCCTTA 60.680 55.000 7.12 0.00 46.60 2.69
545 553 1.136984 GACACGTCTAGAGCCCACG 59.863 63.158 0.00 0.00 39.48 4.94
547 555 1.303074 ACGACACGTCTAGAGCCCA 60.303 57.895 0.00 0.00 33.69 5.36
671 679 2.093764 CCGAGGAAGAAGAGATTGCAGT 60.094 50.000 0.00 0.00 0.00 4.40
701 709 1.025812 CGTCTTATCTGACTCCGGCT 58.974 55.000 0.00 0.00 35.00 5.52
711 719 1.437986 GGCGAGCCACGTCTTATCT 59.562 57.895 9.58 0.00 43.76 1.98
732 740 2.007049 GCGACATTGGTGAGGTGGTAG 61.007 57.143 0.00 0.00 0.00 3.18
745 753 2.248280 TACCATAATGCGGCGACATT 57.752 45.000 24.75 24.75 42.73 2.71
856 864 2.543067 ATCAGCTCGCCAAAGGGGTC 62.543 60.000 0.00 0.00 39.65 4.46
954 962 2.882742 TATCTCGCTCATCGTCATCG 57.117 50.000 0.00 0.00 39.67 3.84
994 1002 2.519013 GACCTGAGTTTTCATGGGCTT 58.481 47.619 0.00 0.00 31.01 4.35
999 1007 3.063180 GCATCTCGACCTGAGTTTTCATG 59.937 47.826 0.00 0.00 45.46 3.07
1032 1040 1.024579 CCATAGCCGCGTCCAAAGTT 61.025 55.000 4.92 0.00 0.00 2.66
1071 1079 1.298667 GGTGCCGGTATTGAGGTGT 59.701 57.895 1.90 0.00 0.00 4.16
1161 1169 2.516888 CGTGGGGTTGGAGGTGTCT 61.517 63.158 0.00 0.00 0.00 3.41
1194 1202 2.556287 GCCGGCGTGAGTCTTTTG 59.444 61.111 12.58 0.00 0.00 2.44
1209 1217 1.595382 CCGTTCATCCATCTCGGCC 60.595 63.158 0.00 0.00 35.01 6.13
1245 1253 5.501736 CGTGAACTTCTCGTCACAATTGAAA 60.502 40.000 13.59 0.00 31.90 2.69
1314 1322 0.603707 CAAACTGCTCCTCTTCGGCA 60.604 55.000 0.00 0.00 34.66 5.69
1419 1427 1.215647 GGCGATCAAGTCACGGTCT 59.784 57.895 0.00 0.00 0.00 3.85
1432 1440 1.524621 CCGAATCCAGCAAGGCGAT 60.525 57.895 0.00 0.00 37.29 4.58
1443 1451 0.106708 TATGAGTGCTGCCCGAATCC 59.893 55.000 0.00 0.00 0.00 3.01
1449 1457 2.113860 TGAAGTTATGAGTGCTGCCC 57.886 50.000 0.00 0.00 0.00 5.36
1488 1496 2.586357 GAAGGCAGCCCGACGATC 60.586 66.667 8.22 0.00 35.76 3.69
1580 1589 3.363378 GCTTCTTATCAATGGTGATCGCG 60.363 47.826 0.00 0.00 43.69 5.87
1599 1608 2.602217 GCAGATCAACAACGAAACGCTT 60.602 45.455 0.00 0.00 0.00 4.68
1631 1640 1.673009 GATGTCGAACCCGCCCAAA 60.673 57.895 0.00 0.00 35.37 3.28
1664 1673 0.387565 GCCCAAGCGTTTTGAGGAAA 59.612 50.000 3.76 0.00 0.00 3.13
1676 1685 1.212935 TCCTAGAGAATTGGCCCAAGC 59.787 52.381 1.16 0.00 38.76 4.01
1785 1794 0.323302 TCCTTGCCTTCACACGCATA 59.677 50.000 0.00 0.00 34.35 3.14
1928 1937 2.353610 CGTTGGGTAGCGGTAGGGT 61.354 63.158 0.00 0.00 0.00 4.34
2012 2021 1.678101 GGGGATGAAAATGCGGAAGAG 59.322 52.381 0.00 0.00 0.00 2.85
2018 2027 2.034124 AGAATGGGGGATGAAAATGCG 58.966 47.619 0.00 0.00 0.00 4.73
2034 2043 1.136500 GGCCTTTCGGACGAGTAGAAT 59.864 52.381 0.00 0.00 0.00 2.40
2046 2055 3.584868 AAGTCCCGTCGGCCTTTCG 62.585 63.158 5.50 2.39 0.00 3.46
2132 2141 3.150848 TCATCCAGAAGTTCATCGACG 57.849 47.619 5.50 0.00 0.00 5.12
2156 2165 3.220999 GAAAAAGCGGGCGCCCTTT 62.221 57.895 41.01 32.85 43.17 3.11
2229 2239 1.363744 CGGAATGCTCTCTTGTGGAC 58.636 55.000 0.00 0.00 0.00 4.02
2239 2249 0.376152 CTCATGTGTGCGGAATGCTC 59.624 55.000 0.00 0.00 46.63 4.26
2240 2250 1.028330 CCTCATGTGTGCGGAATGCT 61.028 55.000 0.00 0.00 46.63 3.79
2267 2277 0.606401 AGGCCATCACCACAAACTCG 60.606 55.000 5.01 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.