Multiple sequence alignment - TraesCS2B01G302900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G302900 chr2B 100.000 6361 0 0 1 6361 429143194 429149554 0.000000e+00 11747.0
1 TraesCS2B01G302900 chr2B 83.981 206 33 0 277 482 258696855 258697060 1.400000e-46 198.0
2 TraesCS2B01G302900 chr2B 83.721 129 21 0 401 529 283215463 283215335 8.660000e-24 122.0
3 TraesCS2B01G302900 chr2B 91.026 78 7 0 6283 6360 169606336 169606259 8.720000e-19 106.0
4 TraesCS2B01G302900 chr2D 95.653 4923 131 31 673 5542 360491911 360487019 0.000000e+00 7829.0
5 TraesCS2B01G302900 chr2D 89.535 516 32 11 173 667 360552856 360552342 9.000000e-178 634.0
6 TraesCS2B01G302900 chr2D 83.381 349 47 5 5730 6077 360483526 360483188 4.790000e-81 313.0
7 TraesCS2B01G302900 chr2D 89.041 73 6 2 77 148 244111971 244112042 8.780000e-14 89.8
8 TraesCS2B01G302900 chr2A 95.728 4845 140 33 655 5446 485794793 485789963 0.000000e+00 7738.0
9 TraesCS2B01G302900 chr2A 88.117 648 54 11 3 628 485795439 485794793 0.000000e+00 749.0
10 TraesCS2B01G302900 chr2A 93.704 270 14 3 5446 5715 485789928 485789662 9.930000e-108 401.0
11 TraesCS2B01G302900 chr2A 86.555 357 40 8 5724 6077 485789517 485789166 2.780000e-103 387.0
12 TraesCS2B01G302900 chr2A 89.744 78 8 0 6284 6361 101406450 101406527 4.060000e-17 100.0
13 TraesCS2B01G302900 chr2A 84.884 86 9 4 75 159 304354107 304354025 4.090000e-12 84.2
14 TraesCS2B01G302900 chr2A 89.062 64 7 0 5543 5606 485789902 485789839 5.290000e-11 80.5
15 TraesCS2B01G302900 chr3A 82.671 277 45 2 257 532 396528045 396528319 6.370000e-60 243.0
16 TraesCS2B01G302900 chr3A 81.600 125 17 6 40 162 645150910 645151030 1.460000e-16 99.0
17 TraesCS2B01G302900 chr3A 91.304 69 6 0 6280 6348 686078307 686078375 1.890000e-15 95.3
18 TraesCS2B01G302900 chr3B 82.310 277 41 2 257 532 394084365 394084634 3.830000e-57 233.0
19 TraesCS2B01G302900 chr3B 90.667 75 7 0 6286 6360 735052502 735052428 4.060000e-17 100.0
20 TraesCS2B01G302900 chr1B 82.721 272 35 8 260 529 156690644 156690905 1.380000e-56 231.0
21 TraesCS2B01G302900 chr4A 77.876 339 62 10 173 500 468074343 468074007 1.400000e-46 198.0
22 TraesCS2B01G302900 chr4A 91.358 81 7 0 6281 6361 430179399 430179319 1.870000e-20 111.0
23 TraesCS2B01G302900 chr1D 94.805 77 4 0 6285 6361 126197415 126197491 3.110000e-23 121.0
24 TraesCS2B01G302900 chr1D 91.139 79 5 2 6284 6361 326225994 326226071 8.720000e-19 106.0
25 TraesCS2B01G302900 chr7A 89.873 79 8 0 6282 6360 594430251 594430173 1.130000e-17 102.0
26 TraesCS2B01G302900 chr5D 90.278 72 5 2 88 159 151503917 151503848 6.790000e-15 93.5
27 TraesCS2B01G302900 chr7D 85.227 88 13 0 6274 6361 414430715 414430802 2.440000e-14 91.6
28 TraesCS2B01G302900 chr7D 79.412 136 21 7 41 173 345472877 345472746 8.780000e-14 89.8
29 TraesCS2B01G302900 chr7D 85.882 85 6 6 77 159 356156554 356156634 1.140000e-12 86.1
30 TraesCS2B01G302900 chr4B 89.041 73 6 2 87 159 291565435 291565365 8.780000e-14 89.8
31 TraesCS2B01G302900 chr3D 89.041 73 6 2 77 148 80006198 80006269 8.780000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G302900 chr2B 429143194 429149554 6360 False 11747.0 11747 100.0000 1 6361 1 chr2B.!!$F2 6360
1 TraesCS2B01G302900 chr2D 360483188 360491911 8723 True 4071.0 7829 89.5170 673 6077 2 chr2D.!!$R2 5404
2 TraesCS2B01G302900 chr2D 360552342 360552856 514 True 634.0 634 89.5350 173 667 1 chr2D.!!$R1 494
3 TraesCS2B01G302900 chr2A 485789166 485795439 6273 True 1871.1 7738 90.6332 3 6077 5 chr2A.!!$R2 6074

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
46 48 0.320374 TCTACCTTGCAACCTCACGG 59.680 55.000 0.00 0.00 0.00 4.94 F
1196 1247 0.594110 CTCGGGTCTTATCCTCGCTC 59.406 60.000 0.00 0.00 0.00 5.03 F
1352 1404 0.744771 GGAGAGCTTTTTCCGCGGAT 60.745 55.000 31.56 13.53 0.00 4.18 F
1735 1789 1.002134 TGCCCCTTGCTCTAGTTGC 60.002 57.895 4.07 4.07 42.00 4.17 F
1775 1829 2.281761 CAGGCCGCTTTCCAGTGT 60.282 61.111 0.00 0.00 0.00 3.55 F
3503 3558 2.362375 TCGGGCTTTTGGGATGCC 60.362 61.111 0.00 0.00 45.47 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1352 1404 0.107831 CAGACTCCGAACCAAACCCA 59.892 55.000 0.0 0.0 0.00 4.51 R
2516 2571 2.224079 CACGCAGAAACTACAACAGCAT 59.776 45.455 0.0 0.0 0.00 3.79 R
2583 2638 3.316308 TCAGAAAAGAGCAAGAAAGGCAC 59.684 43.478 0.0 0.0 0.00 5.01 R
3503 3558 0.040204 ATGGAAGGCACAAAGGGGAG 59.960 55.000 0.0 0.0 0.00 4.30 R
3657 3712 5.428783 AGCATAAAGATAGTAAGGTGGGTGT 59.571 40.000 0.0 0.0 0.00 4.16 R
5464 5587 0.028505 GCACTTGCCAGTATGATGCG 59.971 55.000 0.0 0.0 39.69 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.328025 TGCTTGCTGCTACCGCCA 62.328 61.111 0.00 0.00 43.37 5.69
46 48 0.320374 TCTACCTTGCAACCTCACGG 59.680 55.000 0.00 0.00 0.00 4.94
83 85 3.119637 GCACGAGCTAGAGAAGAAGAACT 60.120 47.826 0.00 0.00 37.91 3.01
84 86 4.411327 CACGAGCTAGAGAAGAAGAACTG 58.589 47.826 0.00 0.00 0.00 3.16
94 96 3.322254 AGAAGAAGAACTGTGGACACGAT 59.678 43.478 0.00 0.00 0.00 3.73
96 98 4.866508 AGAAGAACTGTGGACACGATAA 57.133 40.909 0.00 0.00 0.00 1.75
105 107 4.509616 TGTGGACACGATAATTTACCCAG 58.490 43.478 0.00 0.00 0.00 4.45
106 108 4.223255 TGTGGACACGATAATTTACCCAGA 59.777 41.667 0.00 0.00 0.00 3.86
122 124 3.508840 GATTCGGGCCACCTTGCG 61.509 66.667 4.39 0.00 33.28 4.85
148 150 1.774894 AACCCCGCTCCTGCTTTGTA 61.775 55.000 0.00 0.00 36.97 2.41
152 154 0.798776 CCGCTCCTGCTTTGTAGTTG 59.201 55.000 0.00 0.00 36.97 3.16
163 165 3.614870 GCTTTGTAGTTGGGATTGCTTGG 60.615 47.826 0.00 0.00 0.00 3.61
235 237 1.741770 GCGACCCTTGTGGCTGTAG 60.742 63.158 0.00 0.00 42.33 2.74
251 253 3.181511 GCTGTAGCGTATCATGTTTGCAA 60.182 43.478 0.00 0.00 0.00 4.08
257 259 6.007936 AGCGTATCATGTTTGCAAGTTTAA 57.992 33.333 0.00 0.00 0.00 1.52
261 283 7.114247 GCGTATCATGTTTGCAAGTTTAAGAAA 59.886 33.333 0.00 0.00 0.00 2.52
291 313 7.758528 GGTTACGACACTATATTCAACTCTTGT 59.241 37.037 0.00 0.00 0.00 3.16
303 325 3.126831 CAACTCTTGTCTGTGAGTGGAC 58.873 50.000 0.00 0.00 42.02 4.02
333 355 5.299531 CCACGAGACTAGAACATTATCTCCA 59.700 44.000 0.00 0.00 33.66 3.86
449 472 4.402056 TCTTGGTATTTCATCCTCGACC 57.598 45.455 0.00 0.00 0.00 4.79
452 475 3.289836 TGGTATTTCATCCTCGACCGTA 58.710 45.455 0.00 0.00 0.00 4.02
461 484 1.511305 CTCGACCGTACATGCCAGT 59.489 57.895 0.00 0.00 0.00 4.00
472 495 4.023792 CGTACATGCCAGTTATTGATGCAT 60.024 41.667 0.00 0.00 43.01 3.96
484 507 2.793288 TGATGCATGGACTGACACAT 57.207 45.000 2.46 0.00 0.00 3.21
488 511 5.008980 TGATGCATGGACTGACACATTAAA 58.991 37.500 2.46 0.00 0.00 1.52
520 543 1.672320 GCTCCTATAAGGGACCGGC 59.328 63.158 0.00 0.00 35.59 6.13
613 636 6.781138 TGTGGCAACGAGAATATATTGTTTC 58.219 36.000 1.78 0.00 42.51 2.78
655 678 8.742554 AAGTTTTCGATTCATATTTGTTGGAC 57.257 30.769 0.00 0.00 0.00 4.02
656 679 7.312899 AGTTTTCGATTCATATTTGTTGGACC 58.687 34.615 0.00 0.00 0.00 4.46
657 680 6.825944 TTTCGATTCATATTTGTTGGACCA 57.174 33.333 0.00 0.00 0.00 4.02
658 681 6.825944 TTCGATTCATATTTGTTGGACCAA 57.174 33.333 1.69 1.69 0.00 3.67
659 682 7.403312 TTCGATTCATATTTGTTGGACCAAT 57.597 32.000 10.83 0.00 0.00 3.16
660 683 8.512966 TTCGATTCATATTTGTTGGACCAATA 57.487 30.769 10.83 4.59 0.00 1.90
661 684 8.512966 TCGATTCATATTTGTTGGACCAATAA 57.487 30.769 10.83 11.48 0.00 1.40
662 685 9.130661 TCGATTCATATTTGTTGGACCAATAAT 57.869 29.630 16.18 16.61 0.00 1.28
663 686 9.398170 CGATTCATATTTGTTGGACCAATAATC 57.602 33.333 16.18 8.67 0.00 1.75
668 691 9.874205 CATATTTGTTGGACCAATAATCTTTGT 57.126 29.630 16.18 3.38 0.00 2.83
702 725 3.885724 TGACGATTCTCTTATGCCACA 57.114 42.857 0.00 0.00 0.00 4.17
715 739 9.143155 TCTCTTATGCCACACATATAAGAACTA 57.857 33.333 0.00 0.00 40.75 2.24
789 814 3.409026 ACAAACTTGCTCTACCTCCAG 57.591 47.619 0.00 0.00 0.00 3.86
890 920 2.018542 CCAATGCATTCCTTGGCAAG 57.981 50.000 20.31 20.31 44.20 4.01
947 977 1.196354 CGTCGACCAGTCTTTCGTACT 59.804 52.381 10.58 0.00 36.60 2.73
1059 1096 5.357596 CCAAGTCCTACTCCTACTACTGAAC 59.642 48.000 0.00 0.00 0.00 3.18
1068 1105 5.105567 TCCTACTACTGAACAGAGAGAGG 57.894 47.826 8.87 9.25 0.00 3.69
1071 1108 3.692690 ACTACTGAACAGAGAGAGGGAC 58.307 50.000 8.87 0.00 0.00 4.46
1196 1247 0.594110 CTCGGGTCTTATCCTCGCTC 59.406 60.000 0.00 0.00 0.00 5.03
1260 1312 3.131478 CGCCCCGCCGAATTTCTT 61.131 61.111 0.00 0.00 0.00 2.52
1352 1404 0.744771 GGAGAGCTTTTTCCGCGGAT 60.745 55.000 31.56 13.53 0.00 4.18
1362 1414 2.675075 CCGCGGATGGGTTTGGTT 60.675 61.111 24.07 0.00 0.00 3.67
1379 1431 1.616456 GGTTCGGAGTCTGGAGTACCT 60.616 57.143 0.00 0.00 37.04 3.08
1449 1501 3.056891 GCTGTTGGTAGGCTGCATTTTTA 60.057 43.478 4.64 0.00 0.00 1.52
1561 1613 1.296715 CAGGTTTCGGGTGGAGGAG 59.703 63.158 0.00 0.00 0.00 3.69
1646 1698 3.427098 GGTTTGCGTGTTCTAAATAGGGC 60.427 47.826 0.00 0.00 0.00 5.19
1728 1782 1.593265 CCATTTGTGCCCCTTGCTC 59.407 57.895 0.00 0.00 42.00 4.26
1735 1789 1.002134 TGCCCCTTGCTCTAGTTGC 60.002 57.895 4.07 4.07 42.00 4.17
1770 1824 2.282180 TGAACCAGGCCGCTTTCC 60.282 61.111 0.00 0.00 0.00 3.13
1775 1829 2.281761 CAGGCCGCTTTCCAGTGT 60.282 61.111 0.00 0.00 0.00 3.55
1833 1887 3.070015 AGTTTTGGCTCAACAAATCTGGG 59.930 43.478 0.00 0.00 39.80 4.45
1920 1975 5.982516 TGCAGCTAATTTTGTTGATTTCGTT 59.017 32.000 0.00 0.00 0.00 3.85
2065 2120 2.686915 GCACATATTCAGCTTCTTGCCT 59.313 45.455 0.00 0.00 44.23 4.75
2275 2330 3.454294 ACCTGATTGGGGTGGGTAT 57.546 52.632 0.00 0.00 41.11 2.73
2516 2571 9.679661 TTGTTAAGGCATCATAGTTTTCTGATA 57.320 29.630 0.00 0.00 31.05 2.15
2559 2614 7.042051 GCGTGCATCTAGATCTTATGGTTTAAA 60.042 37.037 15.67 0.00 0.00 1.52
2777 2832 3.327757 TGCATGAGTACTCTTTCAGGGTT 59.672 43.478 23.01 0.00 0.00 4.11
2828 2883 8.059461 TCCTGAGTTAGTTATCCTGATGTTCTA 58.941 37.037 0.00 0.00 0.00 2.10
2832 2887 9.084533 GAGTTAGTTATCCTGATGTTCTATCCT 57.915 37.037 0.00 0.00 0.00 3.24
2880 2935 4.935205 CGGACCATTCTTGTGTTAGATTCA 59.065 41.667 0.00 0.00 0.00 2.57
3088 3143 3.617263 GGCACCAATCTACTCTTGTTACG 59.383 47.826 0.00 0.00 0.00 3.18
3503 3558 2.362375 TCGGGCTTTTGGGATGCC 60.362 61.111 0.00 0.00 45.47 4.40
3657 3712 1.300963 GTGAGATCCCTTGCTGCCA 59.699 57.895 0.00 0.00 0.00 4.92
3661 3716 2.036256 ATCCCTTGCTGCCACACC 59.964 61.111 0.00 0.00 0.00 4.16
3673 3728 1.557832 TGCCACACCCACCTTACTATC 59.442 52.381 0.00 0.00 0.00 2.08
3683 3738 6.828785 CACCCACCTTACTATCTTTATGCTTT 59.171 38.462 0.00 0.00 0.00 3.51
3955 4010 5.692654 GCACTGCTTACTATAGCTAAGAACC 59.307 44.000 18.49 7.89 41.76 3.62
3987 4042 3.039405 CACGCGATTCAGACTCTGTATC 58.961 50.000 15.93 13.24 35.76 2.24
4216 4271 7.156673 GCATGTTATGGAAGGATGCAATAATT 58.843 34.615 0.00 0.00 39.39 1.40
4332 4387 4.036144 TCATCGTGCAATGTCACAGAAAAA 59.964 37.500 0.00 0.00 36.80 1.94
4554 4609 6.315642 GGTATCTCCTTGCTGTAAAAGGTAAC 59.684 42.308 2.35 0.00 43.97 2.50
4641 4696 5.859205 AGTTGCATTCTTTTGTTTCTCCT 57.141 34.783 0.00 0.00 0.00 3.69
4670 4729 8.610896 GCTCATATGATCCTCTAAATATGTTGC 58.389 37.037 5.72 0.00 35.45 4.17
4776 4836 9.967346 TTATTCGTCCAAATCTCTATCTACTTG 57.033 33.333 0.00 0.00 0.00 3.16
4833 4915 5.126545 CGATTGCATGATATGATCCCCATTT 59.873 40.000 0.00 0.00 36.71 2.32
4845 4929 2.850833 TCCCCATTTCATCTGACCTCT 58.149 47.619 0.00 0.00 0.00 3.69
4846 4930 2.774234 TCCCCATTTCATCTGACCTCTC 59.226 50.000 0.00 0.00 0.00 3.20
4953 5037 4.112341 GCTTTGCAGCGCCAGGAG 62.112 66.667 2.29 0.00 35.91 3.69
4998 5082 2.107953 GGAGCATCTCTGTCCGGC 59.892 66.667 0.00 0.00 33.73 6.13
5022 5106 3.287222 TCCATCATTCCCTTTTTAGCGG 58.713 45.455 0.00 0.00 0.00 5.52
5082 5166 4.981812 TCTTTTTCTTAAGAGGACCACCC 58.018 43.478 5.12 0.00 36.73 4.61
5113 5198 6.226052 CAATCCTTCCTTTTCCTTTTTCCTG 58.774 40.000 0.00 0.00 0.00 3.86
5220 5307 4.102649 GTTTGTTTGAACCTGACCGAAAG 58.897 43.478 0.00 0.00 0.00 2.62
5386 5473 4.684134 ATGCCGCCTGTGCCCTTT 62.684 61.111 0.00 0.00 0.00 3.11
5387 5474 4.912395 TGCCGCCTGTGCCCTTTT 62.912 61.111 0.00 0.00 0.00 2.27
5399 5486 3.119173 TGTGCCCTTTTGTTTTCTCTGTG 60.119 43.478 0.00 0.00 0.00 3.66
5432 5519 4.155826 CCAACGAAATCAAGCCACATCTTA 59.844 41.667 0.00 0.00 0.00 2.10
5463 5586 1.134310 TGTGCTCTATACGACTCCGGA 60.134 52.381 2.93 2.93 40.78 5.14
5464 5587 1.263752 GTGCTCTATACGACTCCGGAC 59.736 57.143 0.00 0.00 40.78 4.79
5465 5588 0.512085 GCTCTATACGACTCCGGACG 59.488 60.000 12.50 12.50 40.78 4.79
5466 5589 0.512085 CTCTATACGACTCCGGACGC 59.488 60.000 13.86 1.65 40.78 5.19
5467 5590 0.179076 TCTATACGACTCCGGACGCA 60.179 55.000 13.86 2.05 40.78 5.24
5468 5591 0.873054 CTATACGACTCCGGACGCAT 59.127 55.000 13.86 9.52 40.78 4.73
5469 5592 0.870393 TATACGACTCCGGACGCATC 59.130 55.000 13.86 2.69 40.78 3.91
5470 5593 1.099295 ATACGACTCCGGACGCATCA 61.099 55.000 13.86 0.00 40.78 3.07
5471 5594 1.099295 TACGACTCCGGACGCATCAT 61.099 55.000 13.86 0.00 40.78 2.45
5472 5595 1.099295 ACGACTCCGGACGCATCATA 61.099 55.000 13.86 0.00 40.78 2.15
5473 5596 0.660595 CGACTCCGGACGCATCATAC 60.661 60.000 0.00 0.00 0.00 2.39
5474 5597 0.669077 GACTCCGGACGCATCATACT 59.331 55.000 0.00 0.00 0.00 2.12
5475 5598 0.385751 ACTCCGGACGCATCATACTG 59.614 55.000 0.00 0.00 0.00 2.74
5476 5599 0.319040 CTCCGGACGCATCATACTGG 60.319 60.000 0.00 0.00 0.00 4.00
5477 5600 1.956170 CCGGACGCATCATACTGGC 60.956 63.158 0.00 0.00 0.00 4.85
5478 5601 1.227234 CGGACGCATCATACTGGCA 60.227 57.895 0.00 0.00 0.00 4.92
5494 5617 2.419057 GCAAGTGCCTGGACAAAGT 58.581 52.632 0.00 0.00 34.31 2.66
5510 5633 4.886579 ACAAAGTCCATTTTGCTCATTCC 58.113 39.130 0.00 0.00 40.80 3.01
5514 5637 3.896888 AGTCCATTTTGCTCATTCCACAA 59.103 39.130 0.00 0.00 0.00 3.33
5570 5693 1.899142 GCCTGGACAAAGCCCATTTTA 59.101 47.619 0.00 0.00 32.49 1.52
5606 5729 3.131577 CACAAACTCCATATGGCTGCATT 59.868 43.478 17.58 8.24 34.44 3.56
5607 5730 3.131577 ACAAACTCCATATGGCTGCATTG 59.868 43.478 17.58 19.05 34.44 2.82
5715 5838 5.914898 AAGGGCTGACATAAAAACATACC 57.085 39.130 0.00 0.00 0.00 2.73
5716 5839 4.929479 AGGGCTGACATAAAAACATACCA 58.071 39.130 0.00 0.00 0.00 3.25
5717 5840 5.329399 AGGGCTGACATAAAAACATACCAA 58.671 37.500 0.00 0.00 0.00 3.67
5718 5841 5.777732 AGGGCTGACATAAAAACATACCAAA 59.222 36.000 0.00 0.00 0.00 3.28
5722 9332 7.489113 GGCTGACATAAAAACATACCAAATCAG 59.511 37.037 0.00 0.00 33.46 2.90
5728 9338 8.748412 CATAAAAACATACCAAATCAGAAGGGA 58.252 33.333 0.00 0.00 0.00 4.20
5739 9349 6.409704 CAAATCAGAAGGGATGACAGAGTTA 58.590 40.000 0.00 0.00 0.00 2.24
5745 9355 8.602424 TCAGAAGGGATGACAGAGTTAAAATTA 58.398 33.333 0.00 0.00 0.00 1.40
5811 9424 4.131088 GTCGTGGCGGAGGAGGAC 62.131 72.222 0.00 0.00 0.00 3.85
5840 9453 4.552365 CCCTGTCATGCGGCGGAT 62.552 66.667 8.49 8.49 0.00 4.18
5843 9456 2.511373 TGTCATGCGGCGGATGAC 60.511 61.111 46.15 46.15 46.72 3.06
5897 9510 0.033504 TTCGCCGCCATATCCTTCTC 59.966 55.000 0.00 0.00 0.00 2.87
5912 9525 0.243907 TTCTCTCGCGCTAGCTTTGT 59.756 50.000 13.93 0.00 42.32 2.83
5966 9579 1.186623 GTTCTTTGTGACGTCGACGAC 59.813 52.381 41.52 34.87 43.02 4.34
5980 9594 1.395954 CGACGACGACATAAGTCTCCA 59.604 52.381 0.00 0.00 42.73 3.86
6061 9675 0.957395 CAGCGGTTCCAGCACAGATT 60.957 55.000 7.95 0.00 37.01 2.40
6063 9677 0.109597 GCGGTTCCAGCACAGATTTG 60.110 55.000 0.00 0.00 34.19 2.32
6071 9685 2.619849 CCAGCACAGATTTGGATGACCT 60.620 50.000 0.00 0.00 37.04 3.85
6073 9687 1.747355 GCACAGATTTGGATGACCTGG 59.253 52.381 0.00 0.00 37.04 4.45
6077 9691 3.784763 ACAGATTTGGATGACCTGGATCT 59.215 43.478 0.00 0.00 37.04 2.75
6078 9692 4.135306 CAGATTTGGATGACCTGGATCTG 58.865 47.826 0.00 1.94 39.03 2.90
6079 9693 3.137913 AGATTTGGATGACCTGGATCTGG 59.862 47.826 0.00 0.00 37.04 3.86
6080 9694 2.268796 TTGGATGACCTGGATCTGGA 57.731 50.000 0.00 0.00 37.04 3.86
6081 9695 2.502068 TGGATGACCTGGATCTGGAT 57.498 50.000 0.00 0.00 37.04 3.41
6082 9696 2.052468 TGGATGACCTGGATCTGGATG 58.948 52.381 0.00 0.00 37.04 3.51
6083 9697 1.350351 GGATGACCTGGATCTGGATGG 59.650 57.143 0.00 1.53 0.00 3.51
6084 9698 2.053244 GATGACCTGGATCTGGATGGT 58.947 52.381 0.00 4.34 0.00 3.55
6085 9699 1.500474 TGACCTGGATCTGGATGGTC 58.500 55.000 0.00 12.04 45.22 4.02
6086 9700 0.761802 GACCTGGATCTGGATGGTCC 59.238 60.000 0.00 0.00 40.74 4.46
6087 9701 1.050988 ACCTGGATCTGGATGGTCCG 61.051 60.000 0.00 0.00 40.17 4.79
6088 9702 0.760567 CCTGGATCTGGATGGTCCGA 60.761 60.000 0.00 0.00 40.17 4.55
6089 9703 1.346062 CTGGATCTGGATGGTCCGAT 58.654 55.000 0.00 3.98 40.17 4.18
6090 9704 1.001746 CTGGATCTGGATGGTCCGATG 59.998 57.143 7.65 0.00 40.17 3.84
6091 9705 1.051812 GGATCTGGATGGTCCGATGT 58.948 55.000 7.65 0.00 40.17 3.06
6092 9706 1.270518 GGATCTGGATGGTCCGATGTG 60.271 57.143 7.65 0.00 40.17 3.21
6093 9707 1.688735 GATCTGGATGGTCCGATGTGA 59.311 52.381 7.65 0.00 40.17 3.58
6094 9708 0.824109 TCTGGATGGTCCGATGTGAC 59.176 55.000 0.00 0.00 40.17 3.67
6095 9709 0.528466 CTGGATGGTCCGATGTGACG 60.528 60.000 0.00 0.00 40.17 4.35
6125 9739 2.750237 GCGTTCGGGCCTTTCCAT 60.750 61.111 0.84 0.00 36.21 3.41
6126 9740 1.450669 GCGTTCGGGCCTTTCCATA 60.451 57.895 0.84 0.00 36.21 2.74
6127 9741 0.818040 GCGTTCGGGCCTTTCCATAT 60.818 55.000 0.84 0.00 36.21 1.78
6128 9742 1.226746 CGTTCGGGCCTTTCCATATC 58.773 55.000 0.84 0.00 36.21 1.63
6129 9743 1.605753 GTTCGGGCCTTTCCATATCC 58.394 55.000 0.84 0.00 36.21 2.59
6130 9744 1.133915 GTTCGGGCCTTTCCATATCCA 60.134 52.381 0.84 0.00 36.21 3.41
6131 9745 0.472471 TCGGGCCTTTCCATATCCAC 59.528 55.000 0.84 0.00 36.21 4.02
6132 9746 0.537371 CGGGCCTTTCCATATCCACC 60.537 60.000 0.84 0.00 36.21 4.61
6133 9747 0.178961 GGGCCTTTCCATATCCACCC 60.179 60.000 0.84 0.00 36.21 4.61
6134 9748 0.853530 GGCCTTTCCATATCCACCCT 59.146 55.000 0.00 0.00 34.01 4.34
6135 9749 2.062636 GGCCTTTCCATATCCACCCTA 58.937 52.381 0.00 0.00 34.01 3.53
6136 9750 2.224793 GGCCTTTCCATATCCACCCTAC 60.225 54.545 0.00 0.00 34.01 3.18
6137 9751 2.441750 GCCTTTCCATATCCACCCTACA 59.558 50.000 0.00 0.00 0.00 2.74
6138 9752 3.074538 GCCTTTCCATATCCACCCTACAT 59.925 47.826 0.00 0.00 0.00 2.29
6139 9753 4.288626 GCCTTTCCATATCCACCCTACATA 59.711 45.833 0.00 0.00 0.00 2.29
6140 9754 5.044846 GCCTTTCCATATCCACCCTACATAT 60.045 44.000 0.00 0.00 0.00 1.78
6141 9755 6.157994 GCCTTTCCATATCCACCCTACATATA 59.842 42.308 0.00 0.00 0.00 0.86
6142 9756 7.635971 GCCTTTCCATATCCACCCTACATATAG 60.636 44.444 0.00 0.00 0.00 1.31
6143 9757 7.147479 CCTTTCCATATCCACCCTACATATAGG 60.147 44.444 0.00 0.00 46.99 2.57
6144 9758 5.216622 TCCATATCCACCCTACATATAGGC 58.783 45.833 0.00 0.00 46.18 3.93
6145 9759 5.042600 TCCATATCCACCCTACATATAGGCT 60.043 44.000 0.00 0.00 46.18 4.58
6146 9760 6.163319 TCCATATCCACCCTACATATAGGCTA 59.837 42.308 0.00 0.00 46.18 3.93
6147 9761 6.495181 CCATATCCACCCTACATATAGGCTAG 59.505 46.154 0.00 0.00 46.18 3.42
6148 9762 5.815723 ATCCACCCTACATATAGGCTAGA 57.184 43.478 0.00 0.00 46.18 2.43
6149 9763 4.931914 TCCACCCTACATATAGGCTAGAC 58.068 47.826 0.00 0.00 46.18 2.59
6150 9764 4.355889 TCCACCCTACATATAGGCTAGACA 59.644 45.833 0.00 0.00 46.18 3.41
6151 9765 5.016352 TCCACCCTACATATAGGCTAGACAT 59.984 44.000 0.00 0.00 46.18 3.06
6152 9766 5.127845 CCACCCTACATATAGGCTAGACATG 59.872 48.000 0.00 6.23 46.18 3.21
6153 9767 5.127845 CACCCTACATATAGGCTAGACATGG 59.872 48.000 0.00 6.81 46.18 3.66
6154 9768 4.651503 CCCTACATATAGGCTAGACATGGG 59.348 50.000 0.00 10.81 46.18 4.00
6155 9769 4.651503 CCTACATATAGGCTAGACATGGGG 59.348 50.000 0.00 12.23 41.80 4.96
6156 9770 3.454858 ACATATAGGCTAGACATGGGGG 58.545 50.000 0.00 0.00 0.00 5.40
6157 9771 3.181395 ACATATAGGCTAGACATGGGGGT 60.181 47.826 0.00 0.00 0.00 4.95
6158 9772 2.514726 ATAGGCTAGACATGGGGGTT 57.485 50.000 0.00 0.00 0.00 4.11
6159 9773 1.507140 TAGGCTAGACATGGGGGTTG 58.493 55.000 0.00 0.00 0.00 3.77
6160 9774 1.453928 GGCTAGACATGGGGGTTGC 60.454 63.158 0.00 0.00 0.00 4.17
6161 9775 1.453928 GCTAGACATGGGGGTTGCC 60.454 63.158 0.00 0.00 0.00 4.52
6162 9776 1.153168 CTAGACATGGGGGTTGCCG 60.153 63.158 0.00 0.00 0.00 5.69
6163 9777 2.608970 CTAGACATGGGGGTTGCCGG 62.609 65.000 0.00 0.00 0.00 6.13
6164 9778 4.041762 GACATGGGGGTTGCCGGA 62.042 66.667 5.05 0.00 0.00 5.14
6165 9779 4.360405 ACATGGGGGTTGCCGGAC 62.360 66.667 5.05 0.00 0.00 4.79
6166 9780 4.047125 CATGGGGGTTGCCGGACT 62.047 66.667 5.05 0.00 0.00 3.85
6167 9781 4.047125 ATGGGGGTTGCCGGACTG 62.047 66.667 5.05 0.00 0.00 3.51
6169 9783 4.717313 GGGGGTTGCCGGACTGTC 62.717 72.222 5.05 0.00 0.00 3.51
6170 9784 4.717313 GGGGTTGCCGGACTGTCC 62.717 72.222 16.99 16.99 0.00 4.02
6179 9793 2.590092 GGACTGTCCGGGGGATTG 59.410 66.667 11.71 0.00 32.73 2.67
6180 9794 1.993391 GGACTGTCCGGGGGATTGA 60.993 63.158 11.71 0.00 32.73 2.57
6181 9795 1.559065 GGACTGTCCGGGGGATTGAA 61.559 60.000 11.71 0.00 32.73 2.69
6182 9796 0.392595 GACTGTCCGGGGGATTGAAC 60.393 60.000 0.00 0.00 32.73 3.18
6183 9797 0.840722 ACTGTCCGGGGGATTGAACT 60.841 55.000 0.00 0.00 32.73 3.01
6184 9798 1.200519 CTGTCCGGGGGATTGAACTA 58.799 55.000 0.00 0.00 32.73 2.24
6185 9799 1.139058 CTGTCCGGGGGATTGAACTAG 59.861 57.143 0.00 0.00 32.73 2.57
6186 9800 0.179054 GTCCGGGGGATTGAACTAGC 60.179 60.000 0.00 0.00 32.73 3.42
6187 9801 0.326238 TCCGGGGGATTGAACTAGCT 60.326 55.000 0.00 0.00 0.00 3.32
6188 9802 0.179045 CCGGGGGATTGAACTAGCTG 60.179 60.000 0.00 0.00 0.00 4.24
6189 9803 0.541863 CGGGGGATTGAACTAGCTGT 59.458 55.000 0.00 0.00 0.00 4.40
6190 9804 1.743772 CGGGGGATTGAACTAGCTGTG 60.744 57.143 0.00 0.00 0.00 3.66
6191 9805 1.559682 GGGGGATTGAACTAGCTGTGA 59.440 52.381 0.00 0.00 0.00 3.58
6192 9806 2.420687 GGGGGATTGAACTAGCTGTGAG 60.421 54.545 0.00 0.00 0.00 3.51
6193 9807 2.420687 GGGGATTGAACTAGCTGTGAGG 60.421 54.545 0.00 0.00 0.00 3.86
6194 9808 2.501723 GGGATTGAACTAGCTGTGAGGA 59.498 50.000 0.00 0.00 0.00 3.71
6195 9809 3.431486 GGGATTGAACTAGCTGTGAGGAG 60.431 52.174 0.00 0.00 0.00 3.69
6196 9810 3.196685 GGATTGAACTAGCTGTGAGGAGT 59.803 47.826 0.00 0.00 0.00 3.85
6197 9811 3.944055 TTGAACTAGCTGTGAGGAGTC 57.056 47.619 0.00 0.00 0.00 3.36
6198 9812 2.171840 TGAACTAGCTGTGAGGAGTCC 58.828 52.381 0.00 0.00 0.00 3.85
6199 9813 1.133407 GAACTAGCTGTGAGGAGTCCG 59.867 57.143 2.76 0.00 0.00 4.79
6200 9814 0.681564 ACTAGCTGTGAGGAGTCCGG 60.682 60.000 2.76 0.00 0.00 5.14
6201 9815 0.681564 CTAGCTGTGAGGAGTCCGGT 60.682 60.000 2.76 0.00 0.00 5.28
6202 9816 0.251653 TAGCTGTGAGGAGTCCGGTT 60.252 55.000 2.76 0.00 0.00 4.44
6203 9817 1.374758 GCTGTGAGGAGTCCGGTTG 60.375 63.158 2.76 0.00 0.00 3.77
6204 9818 1.293498 CTGTGAGGAGTCCGGTTGG 59.707 63.158 2.76 0.00 0.00 3.77
6205 9819 2.172483 CTGTGAGGAGTCCGGTTGGG 62.172 65.000 2.76 0.00 35.24 4.12
6206 9820 2.203182 TGAGGAGTCCGGTTGGGT 59.797 61.111 2.76 0.00 37.00 4.51
6207 9821 2.214216 TGAGGAGTCCGGTTGGGTG 61.214 63.158 2.76 0.00 37.00 4.61
6208 9822 3.607370 GAGGAGTCCGGTTGGGTGC 62.607 68.421 2.76 0.00 37.00 5.01
6212 9826 4.941309 GTCCGGTTGGGTGCGGTT 62.941 66.667 0.00 0.00 37.00 4.44
6213 9827 4.192453 TCCGGTTGGGTGCGGTTT 62.192 61.111 0.00 0.00 37.00 3.27
6214 9828 2.281622 CCGGTTGGGTGCGGTTTA 60.282 61.111 0.00 0.00 0.00 2.01
6215 9829 1.676303 CCGGTTGGGTGCGGTTTAT 60.676 57.895 0.00 0.00 0.00 1.40
6216 9830 1.650314 CCGGTTGGGTGCGGTTTATC 61.650 60.000 0.00 0.00 0.00 1.75
6217 9831 0.675522 CGGTTGGGTGCGGTTTATCT 60.676 55.000 0.00 0.00 0.00 1.98
6218 9832 1.092348 GGTTGGGTGCGGTTTATCTC 58.908 55.000 0.00 0.00 0.00 2.75
6219 9833 0.725117 GTTGGGTGCGGTTTATCTCG 59.275 55.000 0.00 0.00 0.00 4.04
6220 9834 0.391927 TTGGGTGCGGTTTATCTCGG 60.392 55.000 0.00 0.00 0.00 4.63
6221 9835 2.178235 GGGTGCGGTTTATCTCGGC 61.178 63.158 0.00 0.00 0.00 5.54
6222 9836 1.448893 GGTGCGGTTTATCTCGGCA 60.449 57.895 0.00 0.00 38.44 5.69
6223 9837 1.022451 GGTGCGGTTTATCTCGGCAA 61.022 55.000 0.00 0.00 41.31 4.52
6224 9838 1.014352 GTGCGGTTTATCTCGGCAAT 58.986 50.000 0.00 0.00 41.31 3.56
6225 9839 1.013596 TGCGGTTTATCTCGGCAATG 58.986 50.000 0.00 0.00 37.98 2.82
6226 9840 1.295792 GCGGTTTATCTCGGCAATGA 58.704 50.000 0.00 0.00 0.00 2.57
6227 9841 1.003866 GCGGTTTATCTCGGCAATGAC 60.004 52.381 0.00 0.00 0.00 3.06
6228 9842 1.597663 CGGTTTATCTCGGCAATGACC 59.402 52.381 0.00 0.00 0.00 4.02
6236 9850 3.134127 GGCAATGACCGGACAGCC 61.134 66.667 18.44 18.44 34.71 4.85
6237 9851 3.134127 GCAATGACCGGACAGCCC 61.134 66.667 9.46 0.00 0.00 5.19
6246 9860 4.778143 GGACAGCCCGCCGATGTT 62.778 66.667 0.00 0.00 0.00 2.71
6247 9861 2.746277 GACAGCCCGCCGATGTTT 60.746 61.111 0.00 0.00 0.00 2.83
6248 9862 1.448893 GACAGCCCGCCGATGTTTA 60.449 57.895 0.00 0.00 0.00 2.01
6249 9863 1.429148 GACAGCCCGCCGATGTTTAG 61.429 60.000 0.00 0.00 0.00 1.85
6250 9864 2.180204 CAGCCCGCCGATGTTTAGG 61.180 63.158 0.00 0.00 0.00 2.69
6251 9865 2.900337 GCCCGCCGATGTTTAGGG 60.900 66.667 0.00 0.00 44.72 3.53
6252 9866 2.587889 CCCGCCGATGTTTAGGGT 59.412 61.111 0.00 0.00 37.36 4.34
6253 9867 1.817941 CCCGCCGATGTTTAGGGTG 60.818 63.158 0.00 0.00 37.36 4.61
6254 9868 1.817941 CCGCCGATGTTTAGGGTGG 60.818 63.158 0.00 0.00 44.36 4.61
6255 9869 1.219664 CGCCGATGTTTAGGGTGGA 59.780 57.895 0.00 0.00 0.00 4.02
6256 9870 0.179056 CGCCGATGTTTAGGGTGGAT 60.179 55.000 0.00 0.00 0.00 3.41
6257 9871 1.308998 GCCGATGTTTAGGGTGGATG 58.691 55.000 0.00 0.00 0.00 3.51
6258 9872 1.408266 GCCGATGTTTAGGGTGGATGT 60.408 52.381 0.00 0.00 0.00 3.06
6259 9873 2.288666 CCGATGTTTAGGGTGGATGTG 58.711 52.381 0.00 0.00 0.00 3.21
6260 9874 2.288666 CGATGTTTAGGGTGGATGTGG 58.711 52.381 0.00 0.00 0.00 4.17
6261 9875 2.654863 GATGTTTAGGGTGGATGTGGG 58.345 52.381 0.00 0.00 0.00 4.61
6262 9876 0.701731 TGTTTAGGGTGGATGTGGGG 59.298 55.000 0.00 0.00 0.00 4.96
6263 9877 0.033503 GTTTAGGGTGGATGTGGGGG 60.034 60.000 0.00 0.00 0.00 5.40
6264 9878 0.478789 TTTAGGGTGGATGTGGGGGT 60.479 55.000 0.00 0.00 0.00 4.95
6265 9879 0.917333 TTAGGGTGGATGTGGGGGTC 60.917 60.000 0.00 0.00 0.00 4.46
6266 9880 2.850851 TAGGGTGGATGTGGGGGTCC 62.851 65.000 0.00 0.00 35.02 4.46
6267 9881 4.109675 GGTGGATGTGGGGGTCCG 62.110 72.222 0.00 0.00 37.32 4.79
6268 9882 4.109675 GTGGATGTGGGGGTCCGG 62.110 72.222 0.00 0.00 37.32 5.14
6269 9883 4.667935 TGGATGTGGGGGTCCGGT 62.668 66.667 0.00 0.00 37.32 5.28
6270 9884 3.793888 GGATGTGGGGGTCCGGTC 61.794 72.222 0.00 0.00 35.24 4.79
6271 9885 4.157120 GATGTGGGGGTCCGGTCG 62.157 72.222 0.00 0.00 35.24 4.79
6273 9887 3.605412 ATGTGGGGGTCCGGTCGTA 62.605 63.158 0.00 0.00 35.24 3.43
6274 9888 3.455469 GTGGGGGTCCGGTCGTAG 61.455 72.222 0.00 0.00 35.24 3.51
6275 9889 3.660571 TGGGGGTCCGGTCGTAGA 61.661 66.667 0.00 0.00 35.24 2.59
6276 9890 2.123554 GGGGGTCCGGTCGTAGAT 60.124 66.667 0.00 0.00 40.67 1.98
6277 9891 2.496291 GGGGGTCCGGTCGTAGATG 61.496 68.421 0.00 0.00 40.67 2.90
6278 9892 2.416260 GGGTCCGGTCGTAGATGC 59.584 66.667 0.00 0.00 40.67 3.91
6279 9893 2.125961 GGGTCCGGTCGTAGATGCT 61.126 63.158 0.00 0.00 40.67 3.79
6280 9894 1.359475 GGTCCGGTCGTAGATGCTC 59.641 63.158 0.00 0.00 40.67 4.26
6281 9895 1.102222 GGTCCGGTCGTAGATGCTCT 61.102 60.000 0.00 0.00 40.67 4.09
6282 9896 0.739561 GTCCGGTCGTAGATGCTCTT 59.260 55.000 0.00 0.00 40.67 2.85
6283 9897 1.945394 GTCCGGTCGTAGATGCTCTTA 59.055 52.381 0.00 0.00 40.67 2.10
6284 9898 2.031857 GTCCGGTCGTAGATGCTCTTAG 60.032 54.545 0.00 0.00 40.67 2.18
6285 9899 2.158856 TCCGGTCGTAGATGCTCTTAGA 60.159 50.000 0.00 0.00 40.67 2.10
6286 9900 2.224549 CCGGTCGTAGATGCTCTTAGAG 59.775 54.545 4.63 4.63 40.67 2.43
6299 9913 2.939103 CTCTTAGAGCAAATCCAACCGG 59.061 50.000 0.00 0.00 0.00 5.28
6300 9914 2.017049 CTTAGAGCAAATCCAACCGGG 58.983 52.381 6.32 0.00 38.37 5.73
6301 9915 0.393808 TAGAGCAAATCCAACCGGGC 60.394 55.000 6.32 0.00 36.21 6.13
6302 9916 3.051392 GAGCAAATCCAACCGGGCG 62.051 63.158 6.32 0.00 36.21 6.13
6303 9917 3.059386 GCAAATCCAACCGGGCGA 61.059 61.111 6.32 0.00 36.21 5.54
6304 9918 2.874751 CAAATCCAACCGGGCGAC 59.125 61.111 6.32 0.00 36.21 5.19
6316 9930 3.192922 GGCGACCCATTTCGTCCG 61.193 66.667 0.00 0.00 41.26 4.79
6317 9931 3.861263 GCGACCCATTTCGTCCGC 61.861 66.667 0.00 0.00 41.26 5.54
6318 9932 3.192922 CGACCCATTTCGTCCGCC 61.193 66.667 0.00 0.00 34.16 6.13
6319 9933 2.822701 GACCCATTTCGTCCGCCC 60.823 66.667 0.00 0.00 0.00 6.13
6320 9934 3.615509 GACCCATTTCGTCCGCCCA 62.616 63.158 0.00 0.00 0.00 5.36
6321 9935 3.131478 CCCATTTCGTCCGCCCAC 61.131 66.667 0.00 0.00 0.00 4.61
6322 9936 3.496131 CCATTTCGTCCGCCCACG 61.496 66.667 0.00 0.00 41.36 4.94
6323 9937 2.740826 CATTTCGTCCGCCCACGT 60.741 61.111 2.31 0.00 40.79 4.49
6324 9938 2.433664 ATTTCGTCCGCCCACGTC 60.434 61.111 2.31 0.00 40.79 4.34
6325 9939 3.945304 ATTTCGTCCGCCCACGTCC 62.945 63.158 2.31 0.00 40.79 4.79
6329 9943 4.974989 GTCCGCCCACGTCCGTTT 62.975 66.667 0.00 0.00 37.70 3.60
6330 9944 4.238654 TCCGCCCACGTCCGTTTT 62.239 61.111 0.00 0.00 37.70 2.43
6331 9945 4.020378 CCGCCCACGTCCGTTTTG 62.020 66.667 0.00 0.00 37.70 2.44
6332 9946 4.020378 CGCCCACGTCCGTTTTGG 62.020 66.667 0.00 0.00 40.09 3.28
6333 9947 2.903350 GCCCACGTCCGTTTTGGT 60.903 61.111 0.00 0.00 39.52 3.67
6334 9948 2.900167 GCCCACGTCCGTTTTGGTC 61.900 63.158 0.00 0.00 39.52 4.02
6338 9952 4.067016 CGTCCGTTTTGGTCGCCG 62.067 66.667 0.00 0.00 42.13 6.46
6339 9953 2.968697 GTCCGTTTTGGTCGCCGT 60.969 61.111 0.00 0.00 39.52 5.68
6340 9954 2.968156 TCCGTTTTGGTCGCCGTG 60.968 61.111 0.00 0.00 39.52 4.94
6341 9955 4.020378 CCGTTTTGGTCGCCGTGG 62.020 66.667 0.00 0.00 0.00 4.94
6342 9956 2.968156 CGTTTTGGTCGCCGTGGA 60.968 61.111 0.00 0.00 0.00 4.02
6343 9957 2.635338 GTTTTGGTCGCCGTGGAC 59.365 61.111 0.00 0.00 36.18 4.02
6344 9958 2.181521 GTTTTGGTCGCCGTGGACA 61.182 57.895 5.59 0.00 38.70 4.02
6345 9959 1.451567 TTTTGGTCGCCGTGGACAA 60.452 52.632 5.59 0.00 38.70 3.18
6346 9960 1.030488 TTTTGGTCGCCGTGGACAAA 61.030 50.000 5.59 0.00 38.70 2.83
6347 9961 1.030488 TTTGGTCGCCGTGGACAAAA 61.030 50.000 5.59 4.00 37.47 2.44
6348 9962 1.030488 TTGGTCGCCGTGGACAAAAA 61.030 50.000 5.59 0.00 38.70 1.94
6349 9963 1.009335 GGTCGCCGTGGACAAAAAC 60.009 57.895 5.59 0.00 38.70 2.43
6350 9964 1.441732 GGTCGCCGTGGACAAAAACT 61.442 55.000 5.59 0.00 38.70 2.66
6351 9965 0.316689 GTCGCCGTGGACAAAAACTG 60.317 55.000 0.00 0.00 36.91 3.16
6352 9966 0.745128 TCGCCGTGGACAAAAACTGT 60.745 50.000 0.00 0.00 42.61 3.55
6353 9967 0.591236 CGCCGTGGACAAAAACTGTG 60.591 55.000 0.00 0.00 38.84 3.66
6354 9968 0.248866 GCCGTGGACAAAAACTGTGG 60.249 55.000 0.00 0.00 38.84 4.17
6355 9969 0.248866 CCGTGGACAAAAACTGTGGC 60.249 55.000 0.00 0.00 38.84 5.01
6356 9970 0.248866 CGTGGACAAAAACTGTGGCC 60.249 55.000 0.00 0.00 45.34 5.36
6357 9971 0.104120 GTGGACAAAAACTGTGGCCC 59.896 55.000 0.00 0.00 44.39 5.80
6358 9972 0.324738 TGGACAAAAACTGTGGCCCA 60.325 50.000 0.00 0.00 44.39 5.36
6359 9973 0.827368 GGACAAAAACTGTGGCCCAA 59.173 50.000 0.00 0.00 38.35 4.12
6360 9974 1.472552 GGACAAAAACTGTGGCCCAAC 60.473 52.381 0.00 0.00 38.35 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 1.618487 AGGTAGAGTATGGCGGTAGC 58.382 55.000 0.00 0.00 44.18 3.58
23 24 3.119101 CGTGAGGTTGCAAGGTAGAGTAT 60.119 47.826 0.00 0.00 0.00 2.12
64 66 4.411327 CACAGTTCTTCTTCTCTAGCTCG 58.589 47.826 0.00 0.00 0.00 5.03
68 70 5.465935 GTGTCCACAGTTCTTCTTCTCTAG 58.534 45.833 0.00 0.00 0.00 2.43
83 85 4.223255 TCTGGGTAAATTATCGTGTCCACA 59.777 41.667 0.00 0.00 0.00 4.17
84 86 4.761975 TCTGGGTAAATTATCGTGTCCAC 58.238 43.478 0.00 0.00 0.00 4.02
105 107 3.508840 CGCAAGGTGGCCCGAATC 61.509 66.667 0.00 0.00 35.12 2.52
122 124 0.958876 CAGGAGCGGGGTTTTACACC 60.959 60.000 0.00 0.00 46.46 4.16
135 137 1.168714 CCCAACTACAAAGCAGGAGC 58.831 55.000 0.00 0.00 42.56 4.70
148 150 1.079073 CCCCCAAGCAATCCCAACT 59.921 57.895 0.00 0.00 0.00 3.16
163 165 1.499007 TGGCTTATTGGATTCTCCCCC 59.501 52.381 0.00 0.00 35.03 5.40
167 169 8.199449 TCATCAAAATTGGCTTATTGGATTCTC 58.801 33.333 0.00 0.00 0.00 2.87
168 170 8.081517 TCATCAAAATTGGCTTATTGGATTCT 57.918 30.769 0.00 0.00 0.00 2.40
169 171 8.721019 TTCATCAAAATTGGCTTATTGGATTC 57.279 30.769 0.00 0.00 0.00 2.52
171 173 6.764560 GCTTCATCAAAATTGGCTTATTGGAT 59.235 34.615 0.00 0.00 0.00 3.41
218 220 1.741770 GCTACAGCCACAAGGGTCG 60.742 63.158 0.00 0.00 45.83 4.79
233 235 5.621197 AAACTTGCAAACATGATACGCTA 57.379 34.783 0.00 0.00 0.00 4.26
235 237 6.083630 TCTTAAACTTGCAAACATGATACGC 58.916 36.000 0.00 0.00 0.00 4.42
251 253 7.674120 AGTGTCGTAACCCTATTTCTTAAACT 58.326 34.615 0.00 0.00 0.00 2.66
257 259 9.139734 TGAATATAGTGTCGTAACCCTATTTCT 57.860 33.333 0.00 0.00 30.08 2.52
261 283 8.474710 AGTTGAATATAGTGTCGTAACCCTAT 57.525 34.615 0.00 0.00 31.91 2.57
280 302 3.450817 TCCACTCACAGACAAGAGTTGAA 59.549 43.478 0.00 0.00 42.87 2.69
291 313 2.916052 GCGTCCGTCCACTCACAGA 61.916 63.158 0.00 0.00 0.00 3.41
303 325 1.642037 TTCTAGTCTCGTGGCGTCCG 61.642 60.000 0.00 0.00 0.00 4.79
313 335 6.183360 TGCAGTGGAGATAATGTTCTAGTCTC 60.183 42.308 0.00 0.00 35.68 3.36
333 355 7.335422 GGCTAGCTTATAATACAATCATGCAGT 59.665 37.037 15.72 0.00 0.00 4.40
415 438 7.706159 TGAAATACCAAGAATACATCACATGC 58.294 34.615 0.00 0.00 0.00 4.06
449 472 3.312146 TGCATCAATAACTGGCATGTACG 59.688 43.478 0.00 0.00 0.00 3.67
461 484 4.587891 TGTGTCAGTCCATGCATCAATAA 58.412 39.130 0.00 0.00 0.00 1.40
472 495 2.805671 CTGCGTTTAATGTGTCAGTCCA 59.194 45.455 0.00 0.00 0.00 4.02
484 507 3.262420 GAGCCTGAATCTCTGCGTTTAA 58.738 45.455 0.00 0.00 0.00 1.52
488 511 0.975040 AGGAGCCTGAATCTCTGCGT 60.975 55.000 0.00 0.00 0.00 5.24
520 543 3.675225 ACAAGAATCGTTGATGTCACGAG 59.325 43.478 1.34 0.00 39.31 4.18
629 652 9.834628 GTCCAACAAATATGAATCGAAAACTTA 57.165 29.630 0.00 0.00 0.00 2.24
632 655 7.087639 TGGTCCAACAAATATGAATCGAAAAC 58.912 34.615 0.00 0.00 0.00 2.43
633 656 7.220741 TGGTCCAACAAATATGAATCGAAAA 57.779 32.000 0.00 0.00 0.00 2.29
634 657 6.825944 TGGTCCAACAAATATGAATCGAAA 57.174 33.333 0.00 0.00 0.00 3.46
636 659 8.512966 TTATTGGTCCAACAAATATGAATCGA 57.487 30.769 6.41 0.00 33.48 3.59
637 660 9.398170 GATTATTGGTCCAACAAATATGAATCG 57.602 33.333 6.41 0.00 33.48 3.34
642 665 9.874205 ACAAAGATTATTGGTCCAACAAATATG 57.126 29.630 6.41 11.40 34.56 1.78
648 671 9.921637 GAATTAACAAAGATTATTGGTCCAACA 57.078 29.630 6.41 0.00 34.56 3.33
676 699 7.335673 TGTGGCATAAGAGAATCGTCAAAAATA 59.664 33.333 0.00 0.00 42.67 1.40
809 834 8.328758 ACGGGTATAATTGATGGTGATGATTAT 58.671 33.333 0.00 0.00 0.00 1.28
810 835 7.685481 ACGGGTATAATTGATGGTGATGATTA 58.315 34.615 0.00 0.00 0.00 1.75
811 836 6.542821 ACGGGTATAATTGATGGTGATGATT 58.457 36.000 0.00 0.00 0.00 2.57
848 875 4.441079 GCCACCAAGGATCATTTGATTCAG 60.441 45.833 9.94 0.00 41.22 3.02
890 920 5.008118 GCCACCTCAAAAGAGTATATTCTGC 59.992 44.000 0.00 0.00 0.00 4.26
1001 1038 0.461548 TGCACGCATCCAAACCAAAA 59.538 45.000 0.00 0.00 0.00 2.44
1059 1096 1.779221 ATGCTCTGTCCCTCTCTCTG 58.221 55.000 0.00 0.00 0.00 3.35
1068 1105 0.985490 AGGAGGGGAATGCTCTGTCC 60.985 60.000 0.00 0.00 0.00 4.02
1071 1108 0.984961 TGGAGGAGGGGAATGCTCTG 60.985 60.000 0.00 0.00 37.75 3.35
1260 1312 2.721167 CGCCGGAGAGAATGACCCA 61.721 63.158 5.05 0.00 0.00 4.51
1318 1370 1.411977 CTCTCCTCCAGCAATGATCGT 59.588 52.381 0.00 0.00 0.00 3.73
1352 1404 0.107831 CAGACTCCGAACCAAACCCA 59.892 55.000 0.00 0.00 0.00 4.51
1362 1414 0.680280 GCAGGTACTCCAGACTCCGA 60.680 60.000 0.00 0.00 34.60 4.55
1379 1431 1.038681 TCTAACCTATGGACGCCGCA 61.039 55.000 0.00 0.00 0.00 5.69
1449 1501 2.224695 ACGGGGAGAAGGAAACGAAAAT 60.225 45.455 0.00 0.00 0.00 1.82
1646 1698 2.265589 TACTGCATCTGCCATCCATG 57.734 50.000 0.00 0.00 41.18 3.66
1735 1789 2.192443 CCTCATCTGGCAGGGCTG 59.808 66.667 15.73 10.17 0.00 4.85
1770 1824 1.880819 GCAATGGCAAGGGGACACTG 61.881 60.000 0.00 0.00 37.33 3.66
1775 1829 0.471591 AACAAGCAATGGCAAGGGGA 60.472 50.000 0.00 0.00 44.61 4.81
1833 1887 0.615331 TTGGACAGATCAGGCTCCAC 59.385 55.000 0.00 0.00 32.33 4.02
1903 1957 6.093357 ACAAAGCCAACGAAATCAACAAAATT 59.907 30.769 0.00 0.00 0.00 1.82
1904 1958 5.584251 ACAAAGCCAACGAAATCAACAAAAT 59.416 32.000 0.00 0.00 0.00 1.82
1920 1975 7.308951 GGTTATCAAAGCTACTAAACAAAGCCA 60.309 37.037 0.00 0.00 36.92 4.75
2065 2120 4.228567 TTCCGGTCACACTGCGCA 62.229 61.111 10.98 10.98 0.00 6.09
2275 2330 2.762043 TCGATCCATGGTCCGGCA 60.762 61.111 21.71 7.09 0.00 5.69
2306 2361 3.114616 CTCAAGACCCACGCAGCG 61.115 66.667 14.82 14.82 0.00 5.18
2516 2571 2.224079 CACGCAGAAACTACAACAGCAT 59.776 45.455 0.00 0.00 0.00 3.79
2559 2614 8.906867 CACTTCATATTTCAATACCTCACCATT 58.093 33.333 0.00 0.00 0.00 3.16
2583 2638 3.316308 TCAGAAAAGAGCAAGAAAGGCAC 59.684 43.478 0.00 0.00 0.00 5.01
2777 2832 4.591929 TCAGATGCAACTGGATCATTCAA 58.408 39.130 22.19 0.00 44.10 2.69
2828 2883 7.494922 AAAATGGCAGGTACAAAATTAGGAT 57.505 32.000 0.00 0.00 0.00 3.24
3088 3143 6.747280 GTCAGTGTATTGACCATTAAATGCAC 59.253 38.462 8.09 8.09 44.71 4.57
3147 3202 3.587061 TCCTGCAAATCTAACTCCCTCAA 59.413 43.478 0.00 0.00 0.00 3.02
3503 3558 0.040204 ATGGAAGGCACAAAGGGGAG 59.960 55.000 0.00 0.00 0.00 4.30
3657 3712 5.428783 AGCATAAAGATAGTAAGGTGGGTGT 59.571 40.000 0.00 0.00 0.00 4.16
3683 3738 9.226606 CAAACCCTGTACTGAATTGTCTTAATA 57.773 33.333 0.60 0.00 0.00 0.98
3987 4042 2.044551 GGCTTCCCAGGCTCAAGG 60.045 66.667 0.00 0.00 42.53 3.61
4216 4271 4.614475 TCTCTAATCTCCAGCTTCCTCAA 58.386 43.478 0.00 0.00 0.00 3.02
4332 4387 0.252375 ATGCAAGGATTTGGCACCCT 60.252 50.000 0.00 0.00 34.79 4.34
4613 4668 8.496707 AGAAACAAAAGAATGCAACTTCAAAT 57.503 26.923 9.38 0.00 0.00 2.32
4641 4696 9.264653 ACATATTTAGAGGATCATATGAGCTGA 57.735 33.333 19.70 4.85 34.45 4.26
4670 4729 0.847670 CAAGTTGTGTGTTGCATGCG 59.152 50.000 14.09 0.00 0.00 4.73
4682 4741 8.728833 TCTTTTGAAAAATCATTTGCAAGTTGT 58.271 25.926 4.48 0.00 43.35 3.32
4741 4800 7.230712 AGAGATTTGGACGAATAAAGTTGGTTT 59.769 33.333 0.00 0.00 0.00 3.27
4776 4836 5.759506 TGAGTAGCTACAATCTAGTGAGC 57.240 43.478 25.28 0.00 0.00 4.26
4833 4915 4.202620 CCAGTATAGGGAGAGGTCAGATGA 60.203 50.000 0.00 0.00 0.00 2.92
4845 4929 5.027460 TGTAAAAGCAGTCCAGTATAGGGA 58.973 41.667 0.00 0.00 0.00 4.20
4846 4930 5.128827 TCTGTAAAAGCAGTCCAGTATAGGG 59.871 44.000 0.00 0.00 37.70 3.53
4953 5037 1.560860 GAGCACACTGACGTGGCTTC 61.561 60.000 0.00 0.00 45.50 3.86
4998 5082 4.319766 CGCTAAAAAGGGAATGATGGATCG 60.320 45.833 0.00 0.00 0.00 3.69
5022 5106 1.450531 GCAGTGGCCATATGACCAGC 61.451 60.000 21.56 8.69 36.38 4.85
5082 5166 3.006859 GGAAAAGGAAGGATTGGTTGGTG 59.993 47.826 0.00 0.00 0.00 4.17
5113 5198 3.058363 GGCTACGGAGTACAGCATAGTAC 60.058 52.174 0.00 6.14 43.33 2.73
5220 5307 1.605710 CAAGATCATTGGCCATCGTCC 59.394 52.381 6.09 0.00 0.00 4.79
5291 5378 5.009610 ACAAGTGCCGAAAATGAAGTAATGT 59.990 36.000 0.00 0.00 0.00 2.71
5386 5473 0.821711 CCCGGCCACAGAGAAAACAA 60.822 55.000 2.24 0.00 0.00 2.83
5387 5474 1.228124 CCCGGCCACAGAGAAAACA 60.228 57.895 2.24 0.00 0.00 2.83
5432 5519 5.128171 TCGTATAGAGCACACATAAAAGGGT 59.872 40.000 0.00 0.00 0.00 4.34
5463 5586 1.372582 CACTTGCCAGTATGATGCGT 58.627 50.000 0.00 0.00 39.69 5.24
5464 5587 0.028505 GCACTTGCCAGTATGATGCG 59.971 55.000 0.00 0.00 39.69 4.73
5465 5588 3.932459 GCACTTGCCAGTATGATGC 57.068 52.632 0.00 0.00 39.69 3.91
5476 5599 0.312102 GACTTTGTCCAGGCACTTGC 59.688 55.000 0.00 0.00 34.60 4.01
5494 5617 3.006752 GGTTGTGGAATGAGCAAAATGGA 59.993 43.478 0.00 0.00 0.00 3.41
5504 5627 2.035632 GGGTTTGTGGTTGTGGAATGA 58.964 47.619 0.00 0.00 0.00 2.57
5507 5630 0.041238 TGGGGTTTGTGGTTGTGGAA 59.959 50.000 0.00 0.00 0.00 3.53
5510 5633 2.233431 CCATATGGGGTTTGTGGTTGTG 59.767 50.000 14.52 0.00 0.00 3.33
5514 5637 1.340600 CGTCCATATGGGGTTTGTGGT 60.341 52.381 21.78 0.00 37.22 4.16
5570 5693 2.026262 AGTTTGTGGTTGTGGAGTGAGT 60.026 45.455 0.00 0.00 0.00 3.41
5627 5750 7.219322 TGCTATCTTATGACCTACGTACTACA 58.781 38.462 0.00 0.00 0.00 2.74
5628 5751 7.664082 TGCTATCTTATGACCTACGTACTAC 57.336 40.000 0.00 0.00 0.00 2.73
5715 5838 4.841422 ACTCTGTCATCCCTTCTGATTTG 58.159 43.478 0.00 0.00 0.00 2.32
5716 5839 5.511386 AACTCTGTCATCCCTTCTGATTT 57.489 39.130 0.00 0.00 0.00 2.17
5717 5840 6.627087 TTAACTCTGTCATCCCTTCTGATT 57.373 37.500 0.00 0.00 0.00 2.57
5718 5841 6.627087 TTTAACTCTGTCATCCCTTCTGAT 57.373 37.500 0.00 0.00 0.00 2.90
5722 9332 9.841880 GTTTAATTTTAACTCTGTCATCCCTTC 57.158 33.333 0.00 0.00 0.00 3.46
5797 9407 3.827898 CTCGTCCTCCTCCGCCAC 61.828 72.222 0.00 0.00 0.00 5.01
5798 9408 3.360423 ATCTCGTCCTCCTCCGCCA 62.360 63.158 0.00 0.00 0.00 5.69
5800 9410 1.791103 CTCATCTCGTCCTCCTCCGC 61.791 65.000 0.00 0.00 0.00 5.54
5811 9424 1.186200 TGACAGGGTTCCTCATCTCG 58.814 55.000 0.00 0.00 0.00 4.04
5839 9452 1.539929 GGCAGAGCAGAATAGCGTCAT 60.540 52.381 0.00 0.00 40.15 3.06
5840 9453 0.179100 GGCAGAGCAGAATAGCGTCA 60.179 55.000 0.00 0.00 40.15 4.35
5843 9456 1.485838 CGTGGCAGAGCAGAATAGCG 61.486 60.000 0.00 0.00 40.15 4.26
5847 9460 4.928398 CTCGTGGCAGAGCAGAAT 57.072 55.556 0.00 0.00 0.00 2.40
5879 9492 0.827925 AGAGAAGGATATGGCGGCGA 60.828 55.000 12.98 0.00 0.00 5.54
5897 9510 0.807667 ATCCACAAAGCTAGCGCGAG 60.808 55.000 12.10 13.72 42.32 5.03
5912 9525 2.721167 CGGGTGCTCGAGGAATCCA 61.721 63.158 21.43 6.93 0.00 3.41
5966 9579 2.619177 ACCTCGATGGAGACTTATGTCG 59.381 50.000 6.27 0.00 43.27 4.35
5968 9581 3.366396 ACACCTCGATGGAGACTTATGT 58.634 45.455 6.27 0.39 43.27 2.29
5980 9594 0.385751 CGGCACTCATACACCTCGAT 59.614 55.000 0.00 0.00 0.00 3.59
6048 9662 3.084039 GTCATCCAAATCTGTGCTGGAA 58.916 45.455 0.00 0.00 42.41 3.53
6052 9666 2.619849 CCAGGTCATCCAAATCTGTGCT 60.620 50.000 0.00 0.00 35.89 4.40
6061 9675 2.268796 TCCAGATCCAGGTCATCCAA 57.731 50.000 2.06 0.00 35.89 3.53
6063 9677 1.350351 CCATCCAGATCCAGGTCATCC 59.650 57.143 2.06 0.00 0.00 3.51
6071 9685 1.051008 CATCGGACCATCCAGATCCA 58.949 55.000 0.00 0.00 35.91 3.41
6073 9687 1.688735 TCACATCGGACCATCCAGATC 59.311 52.381 0.00 0.00 35.91 2.75
6077 9691 1.515487 CGTCACATCGGACCATCCA 59.485 57.895 0.00 0.00 35.91 3.41
6078 9692 4.420143 CGTCACATCGGACCATCC 57.580 61.111 0.00 0.00 34.24 3.51
6108 9722 0.818040 ATATGGAAAGGCCCGAACGC 60.818 55.000 0.00 0.00 34.97 4.84
6109 9723 1.226746 GATATGGAAAGGCCCGAACG 58.773 55.000 0.00 0.00 34.97 3.95
6110 9724 1.133915 TGGATATGGAAAGGCCCGAAC 60.134 52.381 0.00 0.00 34.97 3.95
6111 9725 1.133915 GTGGATATGGAAAGGCCCGAA 60.134 52.381 0.00 0.00 34.97 4.30
6112 9726 0.472471 GTGGATATGGAAAGGCCCGA 59.528 55.000 0.00 0.00 34.97 5.14
6113 9727 0.537371 GGTGGATATGGAAAGGCCCG 60.537 60.000 0.00 0.00 34.97 6.13
6114 9728 0.178961 GGGTGGATATGGAAAGGCCC 60.179 60.000 0.00 0.00 34.97 5.80
6115 9729 0.853530 AGGGTGGATATGGAAAGGCC 59.146 55.000 0.00 0.00 37.10 5.19
6116 9730 2.441750 TGTAGGGTGGATATGGAAAGGC 59.558 50.000 0.00 0.00 0.00 4.35
6117 9731 6.642733 ATATGTAGGGTGGATATGGAAAGG 57.357 41.667 0.00 0.00 0.00 3.11
6118 9732 7.635971 GCCTATATGTAGGGTGGATATGGAAAG 60.636 44.444 16.53 0.00 46.44 2.62
6119 9733 6.157994 GCCTATATGTAGGGTGGATATGGAAA 59.842 42.308 16.53 0.00 46.44 3.13
6120 9734 5.665812 GCCTATATGTAGGGTGGATATGGAA 59.334 44.000 16.53 0.00 46.44 3.53
6121 9735 5.216622 GCCTATATGTAGGGTGGATATGGA 58.783 45.833 16.53 0.00 46.44 3.41
6122 9736 5.552870 GCCTATATGTAGGGTGGATATGG 57.447 47.826 16.53 0.00 46.44 2.74
6131 9745 4.651503 CCCATGTCTAGCCTATATGTAGGG 59.348 50.000 16.53 1.32 46.44 3.53
6133 9747 4.651503 CCCCCATGTCTAGCCTATATGTAG 59.348 50.000 0.00 0.00 0.00 2.74
6134 9748 4.046747 ACCCCCATGTCTAGCCTATATGTA 59.953 45.833 0.00 0.00 0.00 2.29
6135 9749 3.181395 ACCCCCATGTCTAGCCTATATGT 60.181 47.826 0.00 0.00 0.00 2.29
6136 9750 3.454858 ACCCCCATGTCTAGCCTATATG 58.545 50.000 0.00 0.00 0.00 1.78
6137 9751 3.846588 CAACCCCCATGTCTAGCCTATAT 59.153 47.826 0.00 0.00 0.00 0.86
6138 9752 3.248024 CAACCCCCATGTCTAGCCTATA 58.752 50.000 0.00 0.00 0.00 1.31
6139 9753 2.057922 CAACCCCCATGTCTAGCCTAT 58.942 52.381 0.00 0.00 0.00 2.57
6140 9754 1.507140 CAACCCCCATGTCTAGCCTA 58.493 55.000 0.00 0.00 0.00 3.93
6141 9755 1.926426 GCAACCCCCATGTCTAGCCT 61.926 60.000 0.00 0.00 0.00 4.58
6142 9756 1.453928 GCAACCCCCATGTCTAGCC 60.454 63.158 0.00 0.00 0.00 3.93
6143 9757 1.453928 GGCAACCCCCATGTCTAGC 60.454 63.158 0.00 0.00 0.00 3.42
6144 9758 1.153168 CGGCAACCCCCATGTCTAG 60.153 63.158 0.00 0.00 0.00 2.43
6145 9759 2.675242 CCGGCAACCCCCATGTCTA 61.675 63.158 0.00 0.00 0.00 2.59
6146 9760 4.047125 CCGGCAACCCCCATGTCT 62.047 66.667 0.00 0.00 0.00 3.41
6147 9761 4.041762 TCCGGCAACCCCCATGTC 62.042 66.667 0.00 0.00 0.00 3.06
6148 9762 4.360405 GTCCGGCAACCCCCATGT 62.360 66.667 0.00 0.00 0.00 3.21
6149 9763 4.047125 AGTCCGGCAACCCCCATG 62.047 66.667 0.00 0.00 0.00 3.66
6150 9764 4.047125 CAGTCCGGCAACCCCCAT 62.047 66.667 0.00 0.00 0.00 4.00
6152 9766 4.717313 GACAGTCCGGCAACCCCC 62.717 72.222 0.00 0.00 0.00 5.40
6153 9767 4.717313 GGACAGTCCGGCAACCCC 62.717 72.222 3.05 0.00 0.00 4.95
6162 9776 1.559065 TTCAATCCCCCGGACAGTCC 61.559 60.000 9.92 9.92 32.98 3.85
6163 9777 0.392595 GTTCAATCCCCCGGACAGTC 60.393 60.000 0.73 0.00 32.98 3.51
6164 9778 0.840722 AGTTCAATCCCCCGGACAGT 60.841 55.000 0.73 0.00 32.98 3.55
6165 9779 1.139058 CTAGTTCAATCCCCCGGACAG 59.861 57.143 0.73 0.00 32.98 3.51
6166 9780 1.200519 CTAGTTCAATCCCCCGGACA 58.799 55.000 0.73 0.00 32.98 4.02
6167 9781 0.179054 GCTAGTTCAATCCCCCGGAC 60.179 60.000 0.73 0.00 32.98 4.79
6168 9782 0.326238 AGCTAGTTCAATCCCCCGGA 60.326 55.000 0.73 0.00 35.55 5.14
6169 9783 0.179045 CAGCTAGTTCAATCCCCCGG 60.179 60.000 0.00 0.00 0.00 5.73
6170 9784 0.541863 ACAGCTAGTTCAATCCCCCG 59.458 55.000 0.00 0.00 0.00 5.73
6171 9785 1.559682 TCACAGCTAGTTCAATCCCCC 59.440 52.381 0.00 0.00 0.00 5.40
6172 9786 2.420687 CCTCACAGCTAGTTCAATCCCC 60.421 54.545 0.00 0.00 0.00 4.81
6173 9787 2.501723 TCCTCACAGCTAGTTCAATCCC 59.498 50.000 0.00 0.00 0.00 3.85
6174 9788 3.196685 ACTCCTCACAGCTAGTTCAATCC 59.803 47.826 0.00 0.00 0.00 3.01
6175 9789 4.429108 GACTCCTCACAGCTAGTTCAATC 58.571 47.826 0.00 0.00 0.00 2.67
6176 9790 3.196685 GGACTCCTCACAGCTAGTTCAAT 59.803 47.826 0.00 0.00 0.00 2.57
6177 9791 2.563179 GGACTCCTCACAGCTAGTTCAA 59.437 50.000 0.00 0.00 0.00 2.69
6178 9792 2.171840 GGACTCCTCACAGCTAGTTCA 58.828 52.381 0.00 0.00 0.00 3.18
6179 9793 1.133407 CGGACTCCTCACAGCTAGTTC 59.867 57.143 0.00 0.00 0.00 3.01
6180 9794 1.178276 CGGACTCCTCACAGCTAGTT 58.822 55.000 0.00 0.00 0.00 2.24
6181 9795 0.681564 CCGGACTCCTCACAGCTAGT 60.682 60.000 0.00 0.00 0.00 2.57
6182 9796 0.681564 ACCGGACTCCTCACAGCTAG 60.682 60.000 9.46 0.00 0.00 3.42
6183 9797 0.251653 AACCGGACTCCTCACAGCTA 60.252 55.000 9.46 0.00 0.00 3.32
6184 9798 1.534235 AACCGGACTCCTCACAGCT 60.534 57.895 9.46 0.00 0.00 4.24
6185 9799 1.374758 CAACCGGACTCCTCACAGC 60.375 63.158 9.46 0.00 0.00 4.40
6186 9800 1.293498 CCAACCGGACTCCTCACAG 59.707 63.158 9.46 0.00 0.00 3.66
6187 9801 2.214216 CCCAACCGGACTCCTCACA 61.214 63.158 9.46 0.00 0.00 3.58
6188 9802 2.214920 ACCCAACCGGACTCCTCAC 61.215 63.158 9.46 0.00 34.64 3.51
6189 9803 2.203182 ACCCAACCGGACTCCTCA 59.797 61.111 9.46 0.00 34.64 3.86
6190 9804 2.663196 CACCCAACCGGACTCCTC 59.337 66.667 9.46 0.00 34.64 3.71
6191 9805 3.637273 GCACCCAACCGGACTCCT 61.637 66.667 9.46 0.00 34.64 3.69
6198 9812 0.675522 AGATAAACCGCACCCAACCG 60.676 55.000 0.00 0.00 0.00 4.44
6199 9813 1.092348 GAGATAAACCGCACCCAACC 58.908 55.000 0.00 0.00 0.00 3.77
6200 9814 0.725117 CGAGATAAACCGCACCCAAC 59.275 55.000 0.00 0.00 0.00 3.77
6201 9815 0.391927 CCGAGATAAACCGCACCCAA 60.392 55.000 0.00 0.00 0.00 4.12
6202 9816 1.219664 CCGAGATAAACCGCACCCA 59.780 57.895 0.00 0.00 0.00 4.51
6203 9817 2.178235 GCCGAGATAAACCGCACCC 61.178 63.158 0.00 0.00 0.00 4.61
6204 9818 1.022451 TTGCCGAGATAAACCGCACC 61.022 55.000 0.00 0.00 0.00 5.01
6205 9819 1.014352 ATTGCCGAGATAAACCGCAC 58.986 50.000 0.00 0.00 0.00 5.34
6206 9820 1.013596 CATTGCCGAGATAAACCGCA 58.986 50.000 0.00 0.00 0.00 5.69
6207 9821 1.003866 GTCATTGCCGAGATAAACCGC 60.004 52.381 0.00 0.00 0.00 5.68
6208 9822 1.597663 GGTCATTGCCGAGATAAACCG 59.402 52.381 0.00 0.00 0.00 4.44
6219 9833 3.134127 GGCTGTCCGGTCATTGCC 61.134 66.667 14.42 14.42 0.00 4.52
6220 9834 3.134127 GGGCTGTCCGGTCATTGC 61.134 66.667 0.00 2.49 0.00 3.56
6229 9843 2.862674 TAAACATCGGCGGGCTGTCC 62.863 60.000 7.21 0.00 0.00 4.02
6230 9844 1.429148 CTAAACATCGGCGGGCTGTC 61.429 60.000 7.21 0.00 0.00 3.51
6231 9845 1.449601 CTAAACATCGGCGGGCTGT 60.450 57.895 7.21 5.93 0.00 4.40
6232 9846 2.180204 CCTAAACATCGGCGGGCTG 61.180 63.158 7.21 5.23 0.00 4.85
6233 9847 2.189521 CCTAAACATCGGCGGGCT 59.810 61.111 7.21 0.00 0.00 5.19
6234 9848 2.900337 CCCTAAACATCGGCGGGC 60.900 66.667 7.21 0.00 0.00 6.13
6235 9849 1.817941 CACCCTAAACATCGGCGGG 60.818 63.158 7.21 1.91 40.79 6.13
6236 9850 1.817941 CCACCCTAAACATCGGCGG 60.818 63.158 7.21 0.00 0.00 6.13
6237 9851 0.179056 ATCCACCCTAAACATCGGCG 60.179 55.000 0.00 0.00 0.00 6.46
6238 9852 1.308998 CATCCACCCTAAACATCGGC 58.691 55.000 0.00 0.00 0.00 5.54
6239 9853 2.288666 CACATCCACCCTAAACATCGG 58.711 52.381 0.00 0.00 0.00 4.18
6240 9854 2.288666 CCACATCCACCCTAAACATCG 58.711 52.381 0.00 0.00 0.00 3.84
6241 9855 2.654863 CCCACATCCACCCTAAACATC 58.345 52.381 0.00 0.00 0.00 3.06
6242 9856 1.287739 CCCCACATCCACCCTAAACAT 59.712 52.381 0.00 0.00 0.00 2.71
6243 9857 0.701731 CCCCACATCCACCCTAAACA 59.298 55.000 0.00 0.00 0.00 2.83
6244 9858 0.033503 CCCCCACATCCACCCTAAAC 60.034 60.000 0.00 0.00 0.00 2.01
6245 9859 0.478789 ACCCCCACATCCACCCTAAA 60.479 55.000 0.00 0.00 0.00 1.85
6246 9860 0.917333 GACCCCCACATCCACCCTAA 60.917 60.000 0.00 0.00 0.00 2.69
6247 9861 1.307517 GACCCCCACATCCACCCTA 60.308 63.158 0.00 0.00 0.00 3.53
6248 9862 2.614013 GACCCCCACATCCACCCT 60.614 66.667 0.00 0.00 0.00 4.34
6249 9863 3.739613 GGACCCCCACATCCACCC 61.740 72.222 0.00 0.00 34.87 4.61
6250 9864 4.109675 CGGACCCCCACATCCACC 62.110 72.222 0.00 0.00 34.35 4.61
6251 9865 4.109675 CCGGACCCCCACATCCAC 62.110 72.222 0.00 0.00 34.35 4.02
6252 9866 4.667935 ACCGGACCCCCACATCCA 62.668 66.667 9.46 0.00 34.35 3.41
6253 9867 3.793888 GACCGGACCCCCACATCC 61.794 72.222 9.46 0.00 0.00 3.51
6254 9868 4.157120 CGACCGGACCCCCACATC 62.157 72.222 9.46 0.00 0.00 3.06
6255 9869 3.605412 TACGACCGGACCCCCACAT 62.605 63.158 9.46 0.00 0.00 3.21
6256 9870 4.298261 TACGACCGGACCCCCACA 62.298 66.667 9.46 0.00 0.00 4.17
6257 9871 3.455469 CTACGACCGGACCCCCAC 61.455 72.222 9.46 0.00 0.00 4.61
6258 9872 3.000099 ATCTACGACCGGACCCCCA 62.000 63.158 9.46 0.00 0.00 4.96
6259 9873 2.123554 ATCTACGACCGGACCCCC 60.124 66.667 9.46 0.00 0.00 5.40
6260 9874 3.126528 CATCTACGACCGGACCCC 58.873 66.667 9.46 0.00 0.00 4.95
6261 9875 2.073037 GAGCATCTACGACCGGACCC 62.073 65.000 9.46 0.00 0.00 4.46
6262 9876 1.359475 GAGCATCTACGACCGGACC 59.641 63.158 9.46 0.00 0.00 4.46
6277 9891 4.783461 CCGGTTGGATTTGCTCTAAGAGC 61.783 52.174 0.00 0.00 46.74 4.09
6278 9892 2.939103 CCGGTTGGATTTGCTCTAAGAG 59.061 50.000 0.00 0.00 37.49 2.85
6279 9893 2.355716 CCCGGTTGGATTTGCTCTAAGA 60.356 50.000 0.00 0.00 37.49 2.10
6280 9894 2.017049 CCCGGTTGGATTTGCTCTAAG 58.983 52.381 0.00 0.00 37.49 2.18
6281 9895 1.953311 GCCCGGTTGGATTTGCTCTAA 60.953 52.381 0.00 0.00 37.49 2.10
6282 9896 0.393808 GCCCGGTTGGATTTGCTCTA 60.394 55.000 0.00 0.00 37.49 2.43
6283 9897 1.678970 GCCCGGTTGGATTTGCTCT 60.679 57.895 0.00 0.00 37.49 4.09
6284 9898 2.885113 GCCCGGTTGGATTTGCTC 59.115 61.111 0.00 0.00 37.49 4.26
6285 9899 3.061848 CGCCCGGTTGGATTTGCT 61.062 61.111 0.00 0.00 37.49 3.91
6286 9900 3.059386 TCGCCCGGTTGGATTTGC 61.059 61.111 0.00 0.00 37.49 3.68
6287 9901 2.696759 GGTCGCCCGGTTGGATTTG 61.697 63.158 0.00 0.00 37.49 2.32
6288 9902 2.360726 GGTCGCCCGGTTGGATTT 60.361 61.111 0.00 0.00 37.49 2.17
6289 9903 4.419921 GGGTCGCCCGGTTGGATT 62.420 66.667 0.00 0.00 37.49 3.01
6298 9912 2.822701 GGACGAAATGGGTCGCCC 60.823 66.667 7.87 7.87 45.00 6.13
6299 9913 3.192922 CGGACGAAATGGGTCGCC 61.193 66.667 0.00 0.00 45.00 5.54
6300 9914 3.861263 GCGGACGAAATGGGTCGC 61.861 66.667 0.00 0.00 45.00 5.19
6301 9915 3.192922 GGCGGACGAAATGGGTCG 61.193 66.667 0.00 0.00 46.54 4.79
6302 9916 2.822701 GGGCGGACGAAATGGGTC 60.823 66.667 0.00 0.00 0.00 4.46
6303 9917 3.642503 TGGGCGGACGAAATGGGT 61.643 61.111 0.00 0.00 0.00 4.51
6304 9918 3.131478 GTGGGCGGACGAAATGGG 61.131 66.667 0.00 0.00 0.00 4.00
6305 9919 3.496131 CGTGGGCGGACGAAATGG 61.496 66.667 1.76 0.00 42.10 3.16
6306 9920 2.736682 GACGTGGGCGGACGAAATG 61.737 63.158 13.77 0.00 42.10 2.32
6307 9921 2.433664 GACGTGGGCGGACGAAAT 60.434 61.111 13.77 0.00 42.10 2.17
6308 9922 4.668118 GGACGTGGGCGGACGAAA 62.668 66.667 13.77 0.00 42.10 3.46
6312 9926 4.974989 AAACGGACGTGGGCGGAC 62.975 66.667 0.00 0.00 43.45 4.79
6313 9927 4.238654 AAAACGGACGTGGGCGGA 62.239 61.111 0.00 0.00 43.45 5.54
6314 9928 4.020378 CAAAACGGACGTGGGCGG 62.020 66.667 0.00 0.00 43.45 6.13
6315 9929 4.020378 CCAAAACGGACGTGGGCG 62.020 66.667 0.00 0.00 44.93 6.13
6316 9930 2.900167 GACCAAAACGGACGTGGGC 61.900 63.158 0.00 0.00 38.63 5.36
6317 9931 2.600475 CGACCAAAACGGACGTGGG 61.600 63.158 0.00 3.63 46.16 4.61
6318 9932 2.932905 CGACCAAAACGGACGTGG 59.067 61.111 0.00 0.00 46.16 4.94
6322 9936 2.968697 ACGGCGACCAAAACGGAC 60.969 61.111 16.62 0.00 38.63 4.79
6323 9937 2.968156 CACGGCGACCAAAACGGA 60.968 61.111 16.62 0.00 38.63 4.69
6324 9938 4.020378 CCACGGCGACCAAAACGG 62.020 66.667 16.62 0.00 42.50 4.44
6325 9939 2.968156 TCCACGGCGACCAAAACG 60.968 61.111 16.62 0.00 0.00 3.60
6326 9940 1.716826 TTGTCCACGGCGACCAAAAC 61.717 55.000 16.62 3.29 31.35 2.43
6327 9941 1.030488 TTTGTCCACGGCGACCAAAA 61.030 50.000 16.62 4.66 31.35 2.44
6328 9942 1.030488 TTTTGTCCACGGCGACCAAA 61.030 50.000 16.62 13.24 31.35 3.28
6329 9943 1.030488 TTTTTGTCCACGGCGACCAA 61.030 50.000 16.62 7.54 31.35 3.67
6330 9944 1.451567 TTTTTGTCCACGGCGACCA 60.452 52.632 16.62 0.63 31.35 4.02
6331 9945 1.009335 GTTTTTGTCCACGGCGACC 60.009 57.895 16.62 0.00 31.35 4.79
6332 9946 0.316689 CAGTTTTTGTCCACGGCGAC 60.317 55.000 16.62 1.03 0.00 5.19
6333 9947 0.745128 ACAGTTTTTGTCCACGGCGA 60.745 50.000 16.62 0.00 33.87 5.54
6334 9948 0.591236 CACAGTTTTTGTCCACGGCG 60.591 55.000 4.80 4.80 38.16 6.46
6335 9949 0.248866 CCACAGTTTTTGTCCACGGC 60.249 55.000 0.00 0.00 38.16 5.68
6336 9950 0.248866 GCCACAGTTTTTGTCCACGG 60.249 55.000 0.00 0.00 38.16 4.94
6337 9951 0.248866 GGCCACAGTTTTTGTCCACG 60.249 55.000 0.00 0.00 38.16 4.94
6338 9952 0.104120 GGGCCACAGTTTTTGTCCAC 59.896 55.000 4.39 0.00 38.16 4.02
6339 9953 0.324738 TGGGCCACAGTTTTTGTCCA 60.325 50.000 0.00 0.00 38.16 4.02
6340 9954 0.827368 TTGGGCCACAGTTTTTGTCC 59.173 50.000 5.23 0.00 38.16 4.02
6341 9955 1.934589 GTTGGGCCACAGTTTTTGTC 58.065 50.000 5.23 0.00 38.16 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.