Multiple sequence alignment - TraesCS2B01G302600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G302600 chr2B 100.000 5284 0 0 1 5284 426482910 426477627 0.000000e+00 9758.0
1 TraesCS2B01G302600 chr2B 92.593 108 8 0 3590 3697 426479267 426479160 7.090000e-34 156.0
2 TraesCS2B01G302600 chr2B 92.593 108 8 0 3644 3751 426479321 426479214 7.090000e-34 156.0
3 TraesCS2B01G302600 chr2A 94.365 1881 62 11 1733 3593 482696530 482694674 0.000000e+00 2846.0
4 TraesCS2B01G302600 chr2A 94.550 1633 76 9 9 1635 482699111 482697486 0.000000e+00 2510.0
5 TraesCS2B01G302600 chr2A 93.584 826 25 8 4186 4989 482694509 482693690 0.000000e+00 1206.0
6 TraesCS2B01G302600 chr2A 87.634 186 17 5 4979 5161 482691924 482691742 1.490000e-50 211.0
7 TraesCS2B01G302600 chr2A 93.694 111 7 0 3701 3811 482694577 482694687 3.270000e-37 167.0
8 TraesCS2B01G302600 chr2A 96.842 95 3 0 1655 1749 482696787 482696693 5.480000e-35 159.0
9 TraesCS2B01G302600 chr2D 93.147 1970 66 15 1655 3590 359660809 359662743 0.000000e+00 2826.0
10 TraesCS2B01G302600 chr2D 93.113 1510 60 14 148 1635 359658629 359660116 0.000000e+00 2172.0
11 TraesCS2B01G302600 chr2D 94.211 1261 43 8 3709 4951 359662821 359664069 0.000000e+00 1897.0
12 TraesCS2B01G302600 chr2D 93.151 146 10 0 1 146 359635205 359635350 1.150000e-51 215.0
13 TraesCS2B01G302600 chr2D 93.525 139 8 1 4948 5085 359664232 359664370 6.940000e-49 206.0
14 TraesCS2B01G302600 chr2D 89.231 130 11 3 3691 3818 71386453 71386581 5.480000e-35 159.0
15 TraesCS2B01G302600 chr2D 87.402 127 11 4 3697 3819 636207752 636207627 1.980000e-29 141.0
16 TraesCS2B01G302600 chr7A 95.625 160 7 0 2339 2498 83784838 83784997 1.890000e-64 257.0
17 TraesCS2B01G302600 chr7A 94.512 164 8 1 2336 2498 538361885 538361722 8.780000e-63 252.0
18 TraesCS2B01G302600 chr6A 95.652 161 6 1 2339 2498 457379371 457379531 1.890000e-64 257.0
19 TraesCS2B01G302600 chr6A 95.625 160 4 2 2339 2498 495429341 495429497 2.440000e-63 254.0
20 TraesCS2B01G302600 chr5B 95.625 160 7 0 2339 2498 574956449 574956608 1.890000e-64 257.0
21 TraesCS2B01G302600 chr5B 94.340 53 3 0 3644 3696 425096684 425096632 1.220000e-11 82.4
22 TraesCS2B01G302600 chr3D 95.625 160 7 0 2339 2498 422517790 422517631 1.890000e-64 257.0
23 TraesCS2B01G302600 chr4D 95.000 160 8 0 2339 2498 65536288 65536129 8.780000e-63 252.0
24 TraesCS2B01G302600 chr7B 93.805 113 6 1 3696 3808 140933901 140933790 9.100000e-38 169.0
25 TraesCS2B01G302600 chr7B 98.214 56 0 1 3642 3697 140933901 140933847 4.360000e-16 97.1
26 TraesCS2B01G302600 chr7B 97.368 38 1 0 5088 5125 670571 670534 1.230000e-06 65.8
27 TraesCS2B01G302600 chr7D 92.105 114 8 1 3696 3809 175648360 175648248 5.480000e-35 159.0
28 TraesCS2B01G302600 chr7D 91.150 113 9 1 3697 3808 125896762 125896874 9.170000e-33 152.0
29 TraesCS2B01G302600 chr7D 96.429 56 1 1 3643 3697 125896762 125896817 2.030000e-14 91.6
30 TraesCS2B01G302600 chr7D 96.364 55 1 1 3643 3697 249042408 249042461 7.290000e-14 89.8
31 TraesCS2B01G302600 chr7D 92.857 56 3 1 3642 3697 175648360 175648306 4.390000e-11 80.5
32 TraesCS2B01G302600 chr1B 92.035 113 9 0 3698 3810 655590678 655590566 5.480000e-35 159.0
33 TraesCS2B01G302600 chr6D 90.991 111 10 0 3698 3808 418957097 418956987 3.300000e-32 150.0
34 TraesCS2B01G302600 chr6D 90.164 61 5 1 3644 3704 161722697 161722638 1.580000e-10 78.7
35 TraesCS2B01G302600 chr5D 83.688 141 17 4 5149 5284 63267369 63267230 1.540000e-25 128.0
36 TraesCS2B01G302600 chr1A 86.567 67 6 3 3644 3709 107475026 107475090 2.640000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G302600 chr2B 426477627 426482910 5283 True 3356.666667 9758 95.062 1 5284 3 chr2B.!!$R1 5283
1 TraesCS2B01G302600 chr2A 482691742 482699111 7369 True 1386.400000 2846 93.395 9 5161 5 chr2A.!!$R1 5152
2 TraesCS2B01G302600 chr2D 359658629 359664370 5741 False 1775.250000 2826 93.499 148 5085 4 chr2D.!!$F3 4937

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
924 946 1.131420 CGAGCTCGCAAGTTCTTGC 59.869 57.895 25.07 22.68 44.09 4.01 F
1365 1387 0.517755 CTGCGTGACGACAGTAGACT 59.482 55.000 10.10 0.00 0.00 3.24 F
3118 4033 0.828022 TCTTCCCGTGTGTGTGTCTT 59.172 50.000 0.00 0.00 0.00 3.01 F
3619 4547 0.037975 AATTTTTGCTCCTGCCGCAG 60.038 50.000 13.82 13.82 38.80 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2578 3492 0.106967 TGTGCCTTGTGTGCAGGTAA 60.107 50.000 0.0 0.0 39.87 2.85 R
3359 4277 1.334869 CAACAGGCTCACCAAACTGAC 59.665 52.381 0.0 0.0 39.06 3.51 R
4038 5004 0.108756 GGCAAGTGGTCTCCGTACTC 60.109 60.000 0.0 0.0 0.00 2.59 R
5260 8194 0.031111 CATGGTGTAGGAGAGGGGGA 60.031 60.000 0.0 0.0 0.00 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.276058 CTAAGGTTCCCTTGTCGGTTTA 57.724 45.455 5.78 0.00 44.44 2.01
33 34 2.289195 TGTCGGTTTAGACATGGGTCAC 60.289 50.000 0.00 0.00 46.80 3.67
37 38 3.618752 CGGTTTAGACATGGGTCACATCA 60.619 47.826 0.00 0.00 46.80 3.07
49 50 2.125326 CACATCAGGCAGCCCATGG 61.125 63.158 20.59 4.14 0.00 3.66
79 80 7.929941 AATGAGAAGGTTCCATAAGACTTTC 57.070 36.000 0.00 0.00 33.54 2.62
93 94 7.935755 CCATAAGACTTTCCATACATGATCTGT 59.064 37.037 0.00 0.00 42.13 3.41
95 96 6.550938 AGACTTTCCATACATGATCTGTGA 57.449 37.500 0.00 0.00 38.92 3.58
106 107 2.533916 TGATCTGTGAAGGACTCTGCT 58.466 47.619 0.00 0.00 0.00 4.24
127 128 4.813027 CTTCCTTGTACGTAGCCAACTAA 58.187 43.478 0.00 0.00 0.00 2.24
128 129 5.410355 TTCCTTGTACGTAGCCAACTAAT 57.590 39.130 0.00 0.00 0.00 1.73
142 143 7.793948 AGCCAACTAATACCTAATACCCTAG 57.206 40.000 0.00 0.00 0.00 3.02
189 190 1.547901 GGCCCTGGCTTGTAGAAAACT 60.548 52.381 8.29 0.00 41.60 2.66
193 194 4.279922 GCCCTGGCTTGTAGAAAACTTAAA 59.720 41.667 0.00 0.00 38.26 1.52
254 256 8.402798 TCCAATGTAGTAAACACAAACATGAT 57.597 30.769 0.00 0.00 42.09 2.45
259 261 9.719355 ATGTAGTAAACACAAACATGATGTAGA 57.281 29.630 0.00 0.00 42.09 2.59
333 335 7.685481 TGTTACCCTCATTTCAAGACATCTAA 58.315 34.615 0.00 0.00 0.00 2.10
344 346 9.699410 ATTTCAAGACATCTAAATTATGACCCA 57.301 29.630 0.00 0.00 0.00 4.51
373 375 4.758165 TCAAAATCTGACGGTTTAGGTTCC 59.242 41.667 0.00 0.00 0.00 3.62
399 401 6.415867 GTCAATGTTTTCTTCTGTCATGTGTG 59.584 38.462 0.00 0.00 0.00 3.82
410 412 3.073678 TGTCATGTGTGTGCATACTTCC 58.926 45.455 15.05 3.67 0.00 3.46
414 416 4.766373 TCATGTGTGTGCATACTTCCAAAT 59.234 37.500 15.05 0.00 0.00 2.32
423 425 6.645827 TGTGCATACTTCCAAATCAACAATTG 59.354 34.615 3.24 3.24 0.00 2.32
424 426 6.867816 GTGCATACTTCCAAATCAACAATTGA 59.132 34.615 13.59 0.00 45.01 2.57
472 475 8.449085 AATAATGATGTAGAAGTATACGCACG 57.551 34.615 0.00 0.00 0.00 5.34
473 476 4.888038 TGATGTAGAAGTATACGCACGT 57.112 40.909 0.00 0.00 0.00 4.49
475 478 4.333372 TGATGTAGAAGTATACGCACGTCA 59.667 41.667 14.60 14.60 31.40 4.35
533 536 6.205853 GTGTGGTGGTGTTATATTGTTTCTCA 59.794 38.462 0.00 0.00 0.00 3.27
642 647 7.040686 ACGTTTTTAACTTAGATGTGCAATCCT 60.041 33.333 0.00 0.00 0.00 3.24
650 655 3.840991 AGATGTGCAATCCTTATGGCAT 58.159 40.909 4.88 4.88 43.96 4.40
661 666 7.439381 CAATCCTTATGGCATTCTTTAGCAAT 58.561 34.615 4.78 0.00 0.00 3.56
740 745 2.152016 GGAGAAAAAGACCAAGTCCGG 58.848 52.381 0.00 0.00 32.18 5.14
924 946 1.131420 CGAGCTCGCAAGTTCTTGC 59.869 57.895 25.07 22.68 44.09 4.01
1176 1198 4.681978 GCCGCACTCAAGGACCGT 62.682 66.667 0.00 0.00 0.00 4.83
1212 1234 3.563479 GGCCCAAAGGTCCTAAAGATTCA 60.563 47.826 0.00 0.00 34.57 2.57
1244 1266 2.262211 TCTTGATTCTCGCACGATGTG 58.738 47.619 0.00 0.00 36.51 3.21
1245 1267 1.325640 CTTGATTCTCGCACGATGTGG 59.674 52.381 0.00 0.00 33.64 4.17
1292 1314 1.068954 GTGCAAGCTCTAGTTTGTGCC 60.069 52.381 8.14 0.00 38.32 5.01
1330 1352 6.266786 ACCAGTAAATTTGTAAAGGAACCCAG 59.733 38.462 0.00 0.00 0.00 4.45
1337 1359 2.160205 GTAAAGGAACCCAGGCTTGTC 58.840 52.381 0.00 0.00 0.00 3.18
1365 1387 0.517755 CTGCGTGACGACAGTAGACT 59.482 55.000 10.10 0.00 0.00 3.24
1458 1480 6.690530 TGCTTGTCTGATTTTGGGAAAATAG 58.309 36.000 0.00 0.00 40.97 1.73
1547 1569 7.938686 AGAGGTATCAGATGTGTATAGGAGAT 58.061 38.462 0.00 0.00 0.00 2.75
1635 1657 2.984672 TGGGGCTATAATGTAGGCAGA 58.015 47.619 12.19 0.00 41.30 4.26
1636 1658 2.637872 TGGGGCTATAATGTAGGCAGAC 59.362 50.000 12.19 3.31 41.30 3.51
1637 1659 2.637872 GGGGCTATAATGTAGGCAGACA 59.362 50.000 12.19 0.00 41.30 3.41
1640 1662 4.263068 GGGCTATAATGTAGGCAGACATGT 60.263 45.833 12.19 0.00 39.99 3.21
1642 1664 6.464222 GGCTATAATGTAGGCAGACATGTTA 58.536 40.000 0.00 0.00 39.99 2.41
1644 1666 6.591834 GCTATAATGTAGGCAGACATGTTAGG 59.408 42.308 0.00 0.00 39.99 2.69
1646 1668 1.837439 TGTAGGCAGACATGTTAGGGG 59.163 52.381 0.00 0.00 0.00 4.79
1647 1669 0.837272 TAGGCAGACATGTTAGGGGC 59.163 55.000 0.00 2.64 0.00 5.80
1649 1671 0.837272 GGCAGACATGTTAGGGGCTA 59.163 55.000 0.00 0.00 0.00 3.93
1650 1672 1.421646 GGCAGACATGTTAGGGGCTAT 59.578 52.381 0.00 0.00 0.00 2.97
1651 1673 2.637872 GGCAGACATGTTAGGGGCTATA 59.362 50.000 0.00 0.00 0.00 1.31
1653 1675 4.263506 GGCAGACATGTTAGGGGCTATAAT 60.264 45.833 0.00 0.00 0.00 1.28
1707 2410 1.129811 CCGTTTTGATAAGTGGGACGC 59.870 52.381 0.00 0.00 40.45 5.19
1751 2633 7.337689 CAGGATGTCTCTGATTTCCAACAAATA 59.662 37.037 0.00 0.00 34.36 1.40
1752 2634 8.057623 AGGATGTCTCTGATTTCCAACAAATAT 58.942 33.333 0.00 0.00 0.00 1.28
1880 2762 3.137176 TGCCTCTATAGCAAGCCAAAGAT 59.863 43.478 0.00 0.00 37.28 2.40
1924 2806 1.000396 AGCCCAACAGGAAGATGCC 60.000 57.895 0.00 0.00 38.24 4.40
1979 2878 3.191162 TGTATTTCATTGTCAGCAGCCAC 59.809 43.478 0.00 0.00 0.00 5.01
2011 2910 8.902806 GTTAATCACATTCTATTTCCATCCACA 58.097 33.333 0.00 0.00 0.00 4.17
2091 2990 9.619316 GTTCATACATTTGTGCTGTGTTAAATA 57.381 29.630 0.00 0.00 0.00 1.40
2105 3004 5.707764 TGTGTTAAATAGCACATGCCTTACA 59.292 36.000 6.08 0.00 41.46 2.41
2158 3058 6.759272 TGTTTATCACTTAGTTCTGCTGTCT 58.241 36.000 0.00 0.00 0.00 3.41
2527 3441 7.118245 GCATAGCATTGCCTTAAAATTTATCCC 59.882 37.037 4.70 0.00 36.60 3.85
2534 3448 4.098807 GCCTTAAAATTTATCCCGCCTTGA 59.901 41.667 0.00 0.00 0.00 3.02
2545 3459 1.064685 CCCGCCTTGACTTCCCTATTT 60.065 52.381 0.00 0.00 0.00 1.40
2546 3460 2.620627 CCCGCCTTGACTTCCCTATTTT 60.621 50.000 0.00 0.00 0.00 1.82
2547 3461 2.423538 CCGCCTTGACTTCCCTATTTTG 59.576 50.000 0.00 0.00 0.00 2.44
2548 3462 3.081804 CGCCTTGACTTCCCTATTTTGT 58.918 45.455 0.00 0.00 0.00 2.83
2549 3463 3.506067 CGCCTTGACTTCCCTATTTTGTT 59.494 43.478 0.00 0.00 0.00 2.83
2550 3464 4.379499 CGCCTTGACTTCCCTATTTTGTTC 60.379 45.833 0.00 0.00 0.00 3.18
2551 3465 4.767409 GCCTTGACTTCCCTATTTTGTTCT 59.233 41.667 0.00 0.00 0.00 3.01
2552 3466 5.944007 GCCTTGACTTCCCTATTTTGTTCTA 59.056 40.000 0.00 0.00 0.00 2.10
2553 3467 6.433093 GCCTTGACTTCCCTATTTTGTTCTAA 59.567 38.462 0.00 0.00 0.00 2.10
2554 3468 7.122799 GCCTTGACTTCCCTATTTTGTTCTAAT 59.877 37.037 0.00 0.00 0.00 1.73
2555 3469 9.025041 CCTTGACTTCCCTATTTTGTTCTAATT 57.975 33.333 0.00 0.00 0.00 1.40
2558 3472 9.807921 TGACTTCCCTATTTTGTTCTAATTTCT 57.192 29.630 0.00 0.00 0.00 2.52
2620 3534 5.957842 TGCCGTGATTTGTCTTCTTATTT 57.042 34.783 0.00 0.00 0.00 1.40
2625 3539 7.359595 CCGTGATTTGTCTTCTTATTTTGTCA 58.640 34.615 0.00 0.00 0.00 3.58
3032 3947 2.969238 GTCCAGCCATCATCCGCG 60.969 66.667 0.00 0.00 0.00 6.46
3106 4021 5.447818 GCTTATGACTTGTTGAATCTTCCCG 60.448 44.000 0.00 0.00 0.00 5.14
3107 4022 3.485463 TGACTTGTTGAATCTTCCCGT 57.515 42.857 0.00 0.00 0.00 5.28
3108 4023 3.138304 TGACTTGTTGAATCTTCCCGTG 58.862 45.455 0.00 0.00 0.00 4.94
3109 4024 3.139077 GACTTGTTGAATCTTCCCGTGT 58.861 45.455 0.00 0.00 0.00 4.49
3118 4033 0.828022 TCTTCCCGTGTGTGTGTCTT 59.172 50.000 0.00 0.00 0.00 3.01
3168 4083 7.011295 CACCATGCAAGTTGTGTCTTAAAATTT 59.989 33.333 4.48 0.00 0.00 1.82
3182 4097 8.370940 TGTCTTAAAATTTCAAATGGGTGCATA 58.629 29.630 0.00 0.00 0.00 3.14
3269 4184 5.705441 TCTGCACGAGGAAAAATAATGTTCT 59.295 36.000 0.00 0.00 0.00 3.01
3272 4187 7.206687 TGCACGAGGAAAAATAATGTTCTTTT 58.793 30.769 0.00 0.00 0.00 2.27
3359 4277 1.202687 TGCGCTTCTATCCATGGGAAG 60.203 52.381 19.48 19.48 39.32 3.46
3401 4319 5.125356 TGTCTGTCCCGTAATTCGTAGATA 58.875 41.667 0.00 0.00 35.04 1.98
3476 4394 4.431378 TCCCCTCTAATAACCACTTGACA 58.569 43.478 0.00 0.00 0.00 3.58
3477 4395 4.469945 TCCCCTCTAATAACCACTTGACAG 59.530 45.833 0.00 0.00 0.00 3.51
3478 4396 4.225267 CCCCTCTAATAACCACTTGACAGT 59.775 45.833 0.00 0.00 0.00 3.55
3479 4397 5.424252 CCCCTCTAATAACCACTTGACAGTA 59.576 44.000 0.00 0.00 0.00 2.74
3480 4398 6.338937 CCCTCTAATAACCACTTGACAGTAC 58.661 44.000 0.00 0.00 0.00 2.73
3481 4399 6.070995 CCCTCTAATAACCACTTGACAGTACA 60.071 42.308 0.00 0.00 0.00 2.90
3482 4400 7.036220 CCTCTAATAACCACTTGACAGTACAG 58.964 42.308 0.00 0.00 0.00 2.74
3483 4401 6.395629 TCTAATAACCACTTGACAGTACAGC 58.604 40.000 0.00 0.00 0.00 4.40
3484 4402 4.617253 ATAACCACTTGACAGTACAGCA 57.383 40.909 0.00 0.00 0.00 4.41
3485 4403 2.533266 ACCACTTGACAGTACAGCAG 57.467 50.000 0.00 0.00 0.00 4.24
3486 4404 2.039418 ACCACTTGACAGTACAGCAGA 58.961 47.619 0.00 0.00 0.00 4.26
3487 4405 2.434336 ACCACTTGACAGTACAGCAGAA 59.566 45.455 0.00 0.00 0.00 3.02
3488 4406 3.118408 ACCACTTGACAGTACAGCAGAAA 60.118 43.478 0.00 0.00 0.00 2.52
3489 4407 4.067896 CCACTTGACAGTACAGCAGAAAT 58.932 43.478 0.00 0.00 0.00 2.17
3490 4408 4.516698 CCACTTGACAGTACAGCAGAAATT 59.483 41.667 0.00 0.00 0.00 1.82
3494 4412 3.926527 TGACAGTACAGCAGAAATTAGCG 59.073 43.478 0.00 0.00 35.48 4.26
3528 4456 8.950961 CATTGAAATGTATGTCTCATTAAAGCG 58.049 33.333 0.00 0.00 34.92 4.68
3534 4462 4.778842 ATGTCTCATTAAAGCGCGTAAG 57.221 40.909 8.43 0.11 43.44 2.34
3549 4477 3.241804 CGCGTAAGATTCTGCTTCTTCAC 60.242 47.826 0.00 0.00 43.02 3.18
3552 4480 4.926238 CGTAAGATTCTGCTTCTTCACACT 59.074 41.667 0.00 0.00 43.02 3.55
3553 4481 5.406780 CGTAAGATTCTGCTTCTTCACACTT 59.593 40.000 0.00 0.00 43.02 3.16
3565 4493 3.380637 TCTTCACACTTAGATAGGACGCC 59.619 47.826 0.00 0.00 0.00 5.68
3590 4518 5.387113 TGGATGCAATGTTATACTCCCTT 57.613 39.130 0.00 0.00 0.00 3.95
3593 4521 5.827797 GGATGCAATGTTATACTCCCTTCAA 59.172 40.000 0.00 0.00 0.00 2.69
3595 4523 6.698008 TGCAATGTTATACTCCCTTCAATG 57.302 37.500 0.00 0.00 0.00 2.82
3596 4524 5.593909 TGCAATGTTATACTCCCTTCAATGG 59.406 40.000 0.00 0.00 0.00 3.16
3597 4525 5.594317 GCAATGTTATACTCCCTTCAATGGT 59.406 40.000 0.00 0.00 0.00 3.55
3598 4526 6.460123 GCAATGTTATACTCCCTTCAATGGTG 60.460 42.308 0.00 0.00 0.00 4.17
3599 4527 5.772393 TGTTATACTCCCTTCAATGGTGT 57.228 39.130 0.00 0.00 34.25 4.16
3601 4529 7.260387 TGTTATACTCCCTTCAATGGTGTAA 57.740 36.000 0.00 0.00 35.97 2.41
3602 4530 7.867921 TGTTATACTCCCTTCAATGGTGTAAT 58.132 34.615 0.00 0.00 35.97 1.89
3604 4532 9.185680 GTTATACTCCCTTCAATGGTGTAATTT 57.814 33.333 0.00 0.00 35.97 1.82
3605 4533 9.762381 TTATACTCCCTTCAATGGTGTAATTTT 57.238 29.630 0.00 0.00 35.97 1.82
3609 4537 5.306678 TCCCTTCAATGGTGTAATTTTTGCT 59.693 36.000 0.00 0.00 0.00 3.91
3612 4540 6.418057 TTCAATGGTGTAATTTTTGCTCCT 57.582 33.333 0.00 0.00 31.39 3.69
3615 4543 2.298729 TGGTGTAATTTTTGCTCCTGCC 59.701 45.455 0.00 0.00 38.71 4.85
3616 4544 2.595386 GTGTAATTTTTGCTCCTGCCG 58.405 47.619 0.00 0.00 38.71 5.69
3617 4545 1.067915 TGTAATTTTTGCTCCTGCCGC 60.068 47.619 0.00 0.00 38.71 6.53
3618 4546 1.067915 GTAATTTTTGCTCCTGCCGCA 60.068 47.619 0.00 0.00 38.71 5.69
3619 4547 0.037975 AATTTTTGCTCCTGCCGCAG 60.038 50.000 13.82 13.82 38.80 5.18
3621 4549 1.391157 TTTTTGCTCCTGCCGCAGTT 61.391 50.000 18.98 0.00 38.80 3.16
3631 4559 3.591835 CCGCAGTTGCCCACGTTT 61.592 61.111 0.00 0.00 37.91 3.60
3632 4560 2.353376 CGCAGTTGCCCACGTTTG 60.353 61.111 0.00 0.00 37.91 2.93
3635 4563 0.382515 GCAGTTGCCCACGTTTGTTA 59.617 50.000 0.00 0.00 34.31 2.41
3637 4565 2.735762 GCAGTTGCCCACGTTTGTTAAA 60.736 45.455 0.00 0.00 34.31 1.52
3639 4567 2.756207 AGTTGCCCACGTTTGTTAAACT 59.244 40.909 0.00 0.00 39.23 2.66
3642 4570 5.068067 AGTTGCCCACGTTTGTTAAACTTAT 59.932 36.000 0.00 0.00 39.23 1.73
3643 4571 5.517322 TGCCCACGTTTGTTAAACTTATT 57.483 34.783 0.00 0.00 39.23 1.40
3645 4573 5.978322 TGCCCACGTTTGTTAAACTTATTTC 59.022 36.000 0.00 0.00 39.23 2.17
3646 4574 5.978322 GCCCACGTTTGTTAAACTTATTTCA 59.022 36.000 0.00 0.00 39.23 2.69
3648 4576 7.170151 GCCCACGTTTGTTAAACTTATTTCAAT 59.830 33.333 0.00 0.00 39.23 2.57
3649 4577 8.484008 CCCACGTTTGTTAAACTTATTTCAATG 58.516 33.333 0.00 0.00 39.23 2.82
3650 4578 8.484008 CCACGTTTGTTAAACTTATTTCAATGG 58.516 33.333 0.00 0.00 39.23 3.16
3651 4579 9.026074 CACGTTTGTTAAACTTATTTCAATGGT 57.974 29.630 0.00 0.00 39.23 3.55
3697 4663 4.217983 TCGCCCACGTTGGTTAAATTTATT 59.782 37.500 7.60 0.00 41.18 1.40
3699 4665 5.061187 CGCCCACGTTGGTTAAATTTATTTC 59.939 40.000 7.60 0.00 35.17 2.17
3700 4666 5.927115 GCCCACGTTGGTTAAATTTATTTCA 59.073 36.000 7.60 0.00 35.17 2.69
3702 4668 7.118535 GCCCACGTTGGTTAAATTTATTTCAAT 59.881 33.333 7.60 0.00 35.17 2.57
3703 4669 8.439286 CCCACGTTGGTTAAATTTATTTCAATG 58.561 33.333 17.20 17.20 35.17 2.82
3704 4670 8.439286 CCACGTTGGTTAAATTTATTTCAATGG 58.561 33.333 20.00 15.34 31.35 3.16
3705 4671 8.983724 CACGTTGGTTAAATTTATTTCAATGGT 58.016 29.630 20.00 14.08 29.48 3.55
3720 4686 8.962884 ATTTCAATGGTATAATTTTTGCTCCC 57.037 30.769 0.00 0.00 0.00 4.30
3721 4687 6.142818 TCAATGGTATAATTTTTGCTCCCG 57.857 37.500 0.00 0.00 0.00 5.14
3722 4688 4.584327 ATGGTATAATTTTTGCTCCCGC 57.416 40.909 0.00 0.00 0.00 6.13
3723 4689 2.691011 TGGTATAATTTTTGCTCCCGCC 59.309 45.455 0.00 0.00 34.43 6.13
3724 4690 2.287368 GGTATAATTTTTGCTCCCGCCG 60.287 50.000 0.00 0.00 34.43 6.46
3725 4691 0.102300 ATAATTTTTGCTCCCGCCGC 59.898 50.000 0.00 0.00 34.43 6.53
3726 4692 1.244697 TAATTTTTGCTCCCGCCGCA 61.245 50.000 0.00 0.00 35.22 5.69
3727 4693 2.490993 AATTTTTGCTCCCGCCGCAG 62.491 55.000 0.00 0.00 38.80 5.18
3728 4694 4.947147 TTTTGCTCCCGCCGCAGT 62.947 61.111 0.00 0.00 38.80 4.40
3733 4699 4.200283 CTCCCGCCGCAGTCTCTC 62.200 72.222 0.00 0.00 0.00 3.20
3735 4701 4.803426 CCCGCCGCAGTCTCTCAC 62.803 72.222 0.00 0.00 0.00 3.51
3736 4702 4.056125 CCGCCGCAGTCTCTCACA 62.056 66.667 0.00 0.00 0.00 3.58
3737 4703 2.182791 CGCCGCAGTCTCTCACAT 59.817 61.111 0.00 0.00 0.00 3.21
3738 4704 1.446792 CGCCGCAGTCTCTCACATT 60.447 57.895 0.00 0.00 0.00 2.71
3739 4705 1.690283 CGCCGCAGTCTCTCACATTG 61.690 60.000 0.00 0.00 0.00 2.82
3774 4740 7.562454 TGGTCAAACTTAAATCTCGAAAAGT 57.438 32.000 0.00 0.00 33.72 2.66
3793 4759 1.569493 GCGGGCGCACTACATTATG 59.431 57.895 8.62 0.00 41.49 1.90
3794 4760 1.841663 GCGGGCGCACTACATTATGG 61.842 60.000 8.62 0.00 41.49 2.74
3847 4813 7.012894 TGACAATAACCACTAAAAGAACACCTG 59.987 37.037 0.00 0.00 0.00 4.00
3853 4819 4.218417 CCACTAAAAGAACACCTGGATTGG 59.782 45.833 0.00 0.00 0.00 3.16
3854 4820 4.218417 CACTAAAAGAACACCTGGATTGGG 59.782 45.833 0.00 0.00 0.00 4.12
3884 4850 9.274065 GTCATAATTTGAACTAATTCGTCAACC 57.726 33.333 0.00 0.00 37.69 3.77
3886 4852 6.894339 AATTTGAACTAATTCGTCAACCCT 57.106 33.333 0.00 0.00 37.69 4.34
3887 4853 7.989416 AATTTGAACTAATTCGTCAACCCTA 57.011 32.000 0.00 0.00 37.69 3.53
3911 4877 3.615496 GCCATTCAGTGTCAAAATCATGC 59.385 43.478 0.00 0.00 0.00 4.06
3934 4900 2.057137 TGGCTGAGATAATGGTTGGC 57.943 50.000 0.00 0.00 0.00 4.52
3948 4914 1.602323 TTGGCTGGCCCTTGTAACG 60.602 57.895 9.28 0.00 34.56 3.18
3960 4926 5.181811 GGCCCTTGTAACGTTACATTTTAGT 59.818 40.000 34.66 0.00 42.66 2.24
4014 4980 6.537301 CAGACCATTTCCATTTCCATGATTTG 59.463 38.462 0.00 0.00 31.07 2.32
4038 5004 6.127168 TGTGATCTGTATACCTAAGGTGGTTG 60.127 42.308 0.00 0.00 41.22 3.77
4053 5019 1.254954 GGTTGAGTACGGAGACCACT 58.745 55.000 6.06 0.00 0.00 4.00
4057 5023 0.108756 GAGTACGGAGACCACTTGCC 60.109 60.000 0.00 0.00 0.00 4.52
4059 5025 1.604308 TACGGAGACCACTTGCCGA 60.604 57.895 7.16 0.00 46.29 5.54
4134 5100 9.269453 GGTAGTAACTTGTGAAATAAGAACAGT 57.731 33.333 0.00 0.00 37.20 3.55
4137 5103 8.975439 AGTAACTTGTGAAATAAGAACAGTACG 58.025 33.333 0.00 0.00 37.20 3.67
4138 5104 8.971321 GTAACTTGTGAAATAAGAACAGTACGA 58.029 33.333 0.00 0.00 37.20 3.43
4139 5105 7.639162 ACTTGTGAAATAAGAACAGTACGAG 57.361 36.000 0.00 0.00 37.20 4.18
4140 5106 6.645415 ACTTGTGAAATAAGAACAGTACGAGG 59.355 38.462 0.00 0.00 37.20 4.63
4141 5107 4.927425 TGTGAAATAAGAACAGTACGAGGC 59.073 41.667 0.00 0.00 0.00 4.70
4142 5108 4.927425 GTGAAATAAGAACAGTACGAGGCA 59.073 41.667 0.00 0.00 0.00 4.75
4143 5109 5.062308 GTGAAATAAGAACAGTACGAGGCAG 59.938 44.000 0.00 0.00 0.00 4.85
4144 5110 4.803098 AATAAGAACAGTACGAGGCAGT 57.197 40.909 0.00 0.00 0.00 4.40
4182 5148 6.966534 ACAGTTCAAATTTCAGAGGAATGT 57.033 33.333 0.00 0.00 31.93 2.71
4209 5175 8.390354 CAGTCTCGTTCATTTTGCTGAATTATA 58.610 33.333 0.00 0.00 37.47 0.98
4274 5240 0.244994 CCACTCGCTGCTCTTGTACT 59.755 55.000 0.00 0.00 0.00 2.73
4320 5288 2.160615 TCGACAATAATTTGTGTGCCCG 59.839 45.455 0.00 0.00 46.01 6.13
4431 5399 1.991121 ACTACACAAGAGTCGGTCCA 58.009 50.000 0.00 0.00 0.00 4.02
4558 5526 1.539124 GTGGAGGGGAAGGACCTGT 60.539 63.158 0.00 0.00 38.79 4.00
4566 5534 1.226746 GGAAGGACCTGTTGTTCGTG 58.773 55.000 0.00 0.00 35.41 4.35
4574 5542 3.276846 GTTGTTCGTGGCCGTGCT 61.277 61.111 0.00 0.00 35.01 4.40
4675 5646 6.590234 AATGATGTTTTACTCCTTGTTCCC 57.410 37.500 0.00 0.00 0.00 3.97
4684 5655 2.982488 ACTCCTTGTTCCCTGTTCATCT 59.018 45.455 0.00 0.00 0.00 2.90
4695 5666 3.760151 CCCTGTTCATCTTTCATGCTTCA 59.240 43.478 0.00 0.00 0.00 3.02
4773 5744 1.213296 ACTTGGTCACCCACTTCAGT 58.787 50.000 0.00 0.00 41.67 3.41
4844 5815 7.903995 TTTCAAGTTGAAGAAAAATGCTGTT 57.096 28.000 17.36 0.00 37.70 3.16
4944 5930 2.250939 CCTTGCTTCGCCGTGACAA 61.251 57.895 0.00 0.00 0.00 3.18
4951 5937 2.400399 CTTCGCCGTGACAAGAAGTAA 58.600 47.619 4.29 0.00 36.34 2.24
5006 7939 1.677552 GTTGGGGTCGTCCATCTGT 59.322 57.895 0.04 0.00 36.58 3.41
5026 7959 2.094659 GCGATGGATATGGACGCCG 61.095 63.158 0.00 0.00 42.79 6.46
5080 8014 6.211587 TCGGTCTCGTTAGAAATAAATGGA 57.788 37.500 0.00 0.00 37.69 3.41
5086 8020 7.652507 GTCTCGTTAGAAATAAATGGACTAGGG 59.347 40.741 0.00 0.00 32.16 3.53
5151 8085 1.982938 GTCACCTACCTGCTCGGGT 60.983 63.158 5.62 5.62 42.86 5.28
5161 8095 4.011517 GCTCGGGTGGGGACGAAA 62.012 66.667 0.00 0.00 0.00 3.46
5162 8096 2.047560 CTCGGGTGGGGACGAAAC 60.048 66.667 0.00 0.00 0.00 2.78
5163 8097 3.600898 CTCGGGTGGGGACGAAACC 62.601 68.421 0.00 0.00 0.00 3.27
5170 8104 3.395630 GGGACGAAACCCTAGCCA 58.604 61.111 9.15 0.00 45.90 4.75
5171 8105 1.912971 GGGACGAAACCCTAGCCAT 59.087 57.895 9.15 0.00 45.90 4.40
5172 8106 0.179054 GGGACGAAACCCTAGCCATC 60.179 60.000 9.15 0.00 45.90 3.51
5173 8107 0.539986 GGACGAAACCCTAGCCATCA 59.460 55.000 0.00 0.00 0.00 3.07
5174 8108 1.473434 GGACGAAACCCTAGCCATCAG 60.473 57.143 0.00 0.00 0.00 2.90
5175 8109 0.541863 ACGAAACCCTAGCCATCAGG 59.458 55.000 0.00 0.00 38.23 3.86
5185 8119 4.079827 CCATCAGGGGCTCTCCTT 57.920 61.111 0.00 0.00 34.31 3.36
5186 8120 1.835693 CCATCAGGGGCTCTCCTTC 59.164 63.158 0.00 0.00 34.31 3.46
5187 8121 0.693767 CCATCAGGGGCTCTCCTTCT 60.694 60.000 0.00 0.00 34.31 2.85
5188 8122 1.211456 CATCAGGGGCTCTCCTTCTT 58.789 55.000 0.00 0.00 34.31 2.52
5189 8123 1.563410 CATCAGGGGCTCTCCTTCTTT 59.437 52.381 0.00 0.00 34.31 2.52
5190 8124 1.280457 TCAGGGGCTCTCCTTCTTTC 58.720 55.000 0.00 0.00 34.31 2.62
5191 8125 0.254462 CAGGGGCTCTCCTTCTTTCC 59.746 60.000 0.00 0.00 34.31 3.13
5192 8126 0.916845 AGGGGCTCTCCTTCTTTCCC 60.917 60.000 0.00 0.00 32.13 3.97
5193 8127 0.916845 GGGGCTCTCCTTCTTTCCCT 60.917 60.000 0.00 0.00 34.28 4.20
5194 8128 0.544223 GGGCTCTCCTTCTTTCCCTC 59.456 60.000 0.00 0.00 0.00 4.30
5195 8129 0.544223 GGCTCTCCTTCTTTCCCTCC 59.456 60.000 0.00 0.00 0.00 4.30
5196 8130 0.544223 GCTCTCCTTCTTTCCCTCCC 59.456 60.000 0.00 0.00 0.00 4.30
5197 8131 1.903955 GCTCTCCTTCTTTCCCTCCCT 60.904 57.143 0.00 0.00 0.00 4.20
5198 8132 2.115427 CTCTCCTTCTTTCCCTCCCTC 58.885 57.143 0.00 0.00 0.00 4.30
5199 8133 1.725182 TCTCCTTCTTTCCCTCCCTCT 59.275 52.381 0.00 0.00 0.00 3.69
5200 8134 1.836802 CTCCTTCTTTCCCTCCCTCTG 59.163 57.143 0.00 0.00 0.00 3.35
5201 8135 0.254462 CCTTCTTTCCCTCCCTCTGC 59.746 60.000 0.00 0.00 0.00 4.26
5202 8136 0.254462 CTTCTTTCCCTCCCTCTGCC 59.746 60.000 0.00 0.00 0.00 4.85
5203 8137 1.553690 TTCTTTCCCTCCCTCTGCCG 61.554 60.000 0.00 0.00 0.00 5.69
5204 8138 3.689002 CTTTCCCTCCCTCTGCCGC 62.689 68.421 0.00 0.00 0.00 6.53
5208 8142 4.247380 CCTCCCTCTGCCGCCATC 62.247 72.222 0.00 0.00 0.00 3.51
5209 8143 4.598894 CTCCCTCTGCCGCCATCG 62.599 72.222 0.00 0.00 0.00 3.84
5211 8145 4.161295 CCCTCTGCCGCCATCGAA 62.161 66.667 0.00 0.00 38.10 3.71
5212 8146 2.587194 CCTCTGCCGCCATCGAAG 60.587 66.667 0.00 0.00 38.10 3.79
5213 8147 2.587194 CTCTGCCGCCATCGAAGG 60.587 66.667 1.31 1.31 38.10 3.46
5214 8148 3.074369 TCTGCCGCCATCGAAGGA 61.074 61.111 11.67 0.00 38.10 3.36
5215 8149 2.892425 CTGCCGCCATCGAAGGAC 60.892 66.667 11.67 0.83 38.10 3.85
5216 8150 4.812476 TGCCGCCATCGAAGGACG 62.812 66.667 11.67 13.07 44.09 4.79
5217 8151 4.814294 GCCGCCATCGAAGGACGT 62.814 66.667 11.67 0.00 43.13 4.34
5218 8152 2.125673 CCGCCATCGAAGGACGTT 60.126 61.111 11.67 0.00 43.13 3.99
5219 8153 2.452813 CCGCCATCGAAGGACGTTG 61.453 63.158 11.67 0.00 43.13 4.10
5220 8154 2.785258 GCCATCGAAGGACGTTGC 59.215 61.111 11.67 0.00 43.13 4.17
5221 8155 2.750888 GCCATCGAAGGACGTTGCC 61.751 63.158 11.67 0.00 43.13 4.52
5222 8156 2.452813 CCATCGAAGGACGTTGCCG 61.453 63.158 0.00 0.00 43.13 5.69
5223 8157 2.125673 ATCGAAGGACGTTGCCGG 60.126 61.111 0.00 0.00 43.13 6.13
5230 8164 4.338327 GACGTTGCCGGCCTATAG 57.662 61.111 26.77 13.32 35.50 1.31
5231 8165 1.954651 GACGTTGCCGGCCTATAGC 60.955 63.158 26.77 6.07 35.50 2.97
5240 8174 3.484793 GCCTATAGCCCAGGGACC 58.515 66.667 10.89 0.00 33.44 4.46
5241 8175 1.461461 GCCTATAGCCCAGGGACCA 60.461 63.158 10.89 0.00 33.44 4.02
5242 8176 1.484444 GCCTATAGCCCAGGGACCAG 61.484 65.000 10.89 0.00 33.44 4.00
5243 8177 1.484444 CCTATAGCCCAGGGACCAGC 61.484 65.000 10.89 0.00 0.00 4.85
5244 8178 1.821061 CTATAGCCCAGGGACCAGCG 61.821 65.000 10.89 0.00 0.00 5.18
5273 8207 2.122769 GGCCTCCCCCTCTCCTAC 60.123 72.222 0.00 0.00 0.00 3.18
5274 8208 2.696893 GCCTCCCCCTCTCCTACA 59.303 66.667 0.00 0.00 0.00 2.74
5275 8209 1.762858 GCCTCCCCCTCTCCTACAC 60.763 68.421 0.00 0.00 0.00 2.90
5276 8210 1.075151 CCTCCCCCTCTCCTACACC 60.075 68.421 0.00 0.00 0.00 4.16
5277 8211 1.704082 CTCCCCCTCTCCTACACCA 59.296 63.158 0.00 0.00 0.00 4.17
5278 8212 0.266152 CTCCCCCTCTCCTACACCAT 59.734 60.000 0.00 0.00 0.00 3.55
5279 8213 0.031111 TCCCCCTCTCCTACACCATG 60.031 60.000 0.00 0.00 0.00 3.66
5280 8214 1.056700 CCCCCTCTCCTACACCATGG 61.057 65.000 11.19 11.19 0.00 3.66
5281 8215 1.056700 CCCCTCTCCTACACCATGGG 61.057 65.000 18.09 7.72 0.00 4.00
5282 8216 1.056700 CCCTCTCCTACACCATGGGG 61.057 65.000 14.08 14.08 41.29 4.96
5283 8217 0.031111 CCTCTCCTACACCATGGGGA 60.031 60.000 24.27 14.27 38.05 4.81
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.517054 TGTCTAAACCGACAAGGGAACCT 61.517 47.826 0.00 0.00 46.85 3.50
4 5 2.224354 TGTCTAAACCGACAAGGGAACC 60.224 50.000 0.00 0.00 43.92 3.62
5 6 3.116079 TGTCTAAACCGACAAGGGAAC 57.884 47.619 0.00 0.00 46.96 3.62
6 7 3.558321 CCATGTCTAAACCGACAAGGGAA 60.558 47.826 7.18 0.00 44.74 3.97
7 8 2.027561 CCATGTCTAAACCGACAAGGGA 60.028 50.000 7.18 0.00 44.74 4.20
15 16 2.465860 TGTGACCCATGTCTAAACCG 57.534 50.000 0.00 0.00 42.28 4.44
17 18 3.941483 CCTGATGTGACCCATGTCTAAAC 59.059 47.826 0.00 0.00 42.28 2.01
21 22 0.254178 GCCTGATGTGACCCATGTCT 59.746 55.000 0.00 0.00 42.28 3.41
29 30 1.077212 ATGGGCTGCCTGATGTGAC 60.077 57.895 19.68 0.00 0.00 3.67
33 34 3.224324 GCCATGGGCTGCCTGATG 61.224 66.667 19.68 19.04 46.69 3.07
49 50 8.940952 GTCTTATGGAACCTTCTCATTATATGC 58.059 37.037 0.00 0.00 0.00 3.14
79 80 5.070180 AGAGTCCTTCACAGATCATGTATGG 59.930 44.000 0.00 0.95 41.41 2.74
106 107 4.870123 TTAGTTGGCTACGTACAAGGAA 57.130 40.909 0.00 0.00 0.00 3.36
127 128 5.033867 GGGGGTTCTAGGGTATTAGGTAT 57.966 47.826 0.00 0.00 0.00 2.73
128 129 4.492182 GGGGGTTCTAGGGTATTAGGTA 57.508 50.000 0.00 0.00 0.00 3.08
165 166 2.204074 TACAAGCCAGGGCCCTCA 60.204 61.111 25.77 0.00 43.17 3.86
228 230 8.226819 TCATGTTTGTGTTTACTACATTGGAA 57.773 30.769 0.00 0.00 39.39 3.53
254 256 9.832445 AGCTTTTCGAGGAAATAATAATCTACA 57.168 29.630 0.00 0.00 31.34 2.74
288 290 7.763071 GGTAACAGAGATACGGTGAATTTACTT 59.237 37.037 0.00 0.00 0.00 2.24
333 335 8.906867 CAGATTTTGATGTAGTGGGTCATAATT 58.093 33.333 0.00 0.00 0.00 1.40
344 346 6.594159 CCTAAACCGTCAGATTTTGATGTAGT 59.406 38.462 0.00 0.00 40.56 2.73
354 356 2.968675 CGGAACCTAAACCGTCAGATT 58.031 47.619 0.00 0.00 43.53 2.40
373 375 5.622448 CACATGACAGAAGAAAACATTGACG 59.378 40.000 0.00 0.00 0.00 4.35
399 401 6.867816 TCAATTGTTGATTTGGAAGTATGCAC 59.132 34.615 5.13 0.00 34.08 4.57
450 452 5.828747 ACGTGCGTATACTTCTACATCATT 58.171 37.500 0.56 0.00 0.00 2.57
452 454 4.333372 TGACGTGCGTATACTTCTACATCA 59.667 41.667 0.00 0.00 0.00 3.07
456 459 5.283247 GCATATGACGTGCGTATACTTCTAC 59.717 44.000 6.97 0.00 32.29 2.59
472 475 2.283617 CACTTCGCTGAGTGCATATGAC 59.716 50.000 6.97 2.11 40.43 3.06
473 476 2.543641 CACTTCGCTGAGTGCATATGA 58.456 47.619 6.97 0.00 40.43 2.15
475 478 1.482182 TCCACTTCGCTGAGTGCATAT 59.518 47.619 9.98 0.00 44.45 1.78
533 536 9.686683 ATCTAGAACCATGCTTATTGTTACTTT 57.313 29.630 0.00 0.00 0.00 2.66
642 647 8.518430 TTCAGTATTGCTAAAGAATGCCATAA 57.482 30.769 0.00 0.00 0.00 1.90
671 676 9.974980 AATTTCCTGTATTTGTTATGACGTTTT 57.025 25.926 0.00 0.00 0.00 2.43
707 712 8.977412 TGGTCTTTTTCTCCTGACTTTTTAATT 58.023 29.630 0.00 0.00 0.00 1.40
717 722 3.494398 CGGACTTGGTCTTTTTCTCCTGA 60.494 47.826 0.00 0.00 32.47 3.86
740 745 2.943033 CCCGTGAGATTGGTGGTTATTC 59.057 50.000 0.00 0.00 0.00 1.75
967 989 2.479730 CCACCAAGACCTCGAATACTCG 60.480 54.545 0.00 0.00 46.87 4.18
1143 1165 4.735132 GCGACGGTGGTAGCAGCA 62.735 66.667 22.55 0.00 43.35 4.41
1188 1210 1.354368 TCTTTAGGACCTTTGGGCCAG 59.646 52.381 11.54 0.00 35.63 4.85
1212 1234 5.350633 CGAGAATCAAGAGCTCAAGAGATT 58.649 41.667 17.77 17.46 33.17 2.40
1244 1266 0.238289 CACACCACAAGAATCGCACC 59.762 55.000 0.00 0.00 0.00 5.01
1245 1267 0.238289 CCACACCACAAGAATCGCAC 59.762 55.000 0.00 0.00 0.00 5.34
1309 1331 5.245301 AGCCTGGGTTCCTTTACAAATTTAC 59.755 40.000 0.00 0.00 0.00 2.01
1330 1352 0.957888 GCAGAGGGAACAGACAAGCC 60.958 60.000 0.00 0.00 0.00 4.35
1337 1359 1.734477 CGTCACGCAGAGGGAACAG 60.734 63.158 0.00 0.00 31.57 3.16
1365 1387 2.204463 TGCTCATCACCCCTTATTCCA 58.796 47.619 0.00 0.00 0.00 3.53
1458 1480 5.292101 CACTTGCTAGTTATAGAAGCACACC 59.708 44.000 0.00 0.00 45.41 4.16
1510 1532 8.371699 ACATCTGATACCTCTCTAATTTAAGCC 58.628 37.037 0.00 0.00 0.00 4.35
1547 1569 7.767198 CCTGGATTATTACCGTAAAAGAAGACA 59.233 37.037 0.00 0.00 0.00 3.41
1586 1608 0.802607 CCTCCGCTGTTCGCTTAGAC 60.803 60.000 0.00 0.00 36.73 2.59
1635 1657 5.280521 GCCTACATTATAGCCCCTAACATGT 60.281 44.000 0.00 0.00 31.77 3.21
1636 1658 5.186198 GCCTACATTATAGCCCCTAACATG 58.814 45.833 0.00 0.00 0.00 3.21
1637 1659 4.849810 TGCCTACATTATAGCCCCTAACAT 59.150 41.667 0.00 0.00 0.00 2.71
1640 1662 4.530946 GTCTGCCTACATTATAGCCCCTAA 59.469 45.833 0.00 0.00 0.00 2.69
1642 1664 2.907042 GTCTGCCTACATTATAGCCCCT 59.093 50.000 0.00 0.00 0.00 4.79
1644 1666 4.256920 CATGTCTGCCTACATTATAGCCC 58.743 47.826 0.00 0.00 38.01 5.19
1646 1668 7.962964 TTAACATGTCTGCCTACATTATAGC 57.037 36.000 0.00 0.00 38.01 2.97
1647 1669 9.494271 ACATTAACATGTCTGCCTACATTATAG 57.506 33.333 0.00 0.00 39.69 1.31
1649 1671 7.255242 GCACATTAACATGTCTGCCTACATTAT 60.255 37.037 0.00 0.00 42.14 1.28
1650 1672 6.038161 GCACATTAACATGTCTGCCTACATTA 59.962 38.462 0.00 0.00 42.14 1.90
1651 1673 5.163622 GCACATTAACATGTCTGCCTACATT 60.164 40.000 0.00 0.00 42.14 2.71
1653 1675 3.689161 GCACATTAACATGTCTGCCTACA 59.311 43.478 0.00 0.00 42.14 2.74
1707 2410 1.471287 CTGCACATCATGGGTTGTCAG 59.529 52.381 0.00 2.24 0.00 3.51
1751 2633 7.124599 TCAAGGAATTCATGGAAATAGTTGCAT 59.875 33.333 3.92 3.92 45.76 3.96
1752 2634 6.436847 TCAAGGAATTCATGGAAATAGTTGCA 59.563 34.615 7.93 0.00 39.64 4.08
1847 2729 8.470805 GCTTGCTATAGAGGCATAGAGTAATAA 58.529 37.037 3.21 0.00 39.54 1.40
1880 2762 2.037251 GTGGTCTACTTCACAGCCTTCA 59.963 50.000 0.00 0.00 34.32 3.02
1924 2806 1.611673 CCAGTGTTTGTGGCTCCTAGG 60.612 57.143 0.82 0.82 0.00 3.02
2142 3042 4.572389 CACACAAAGACAGCAGAACTAAGT 59.428 41.667 0.00 0.00 0.00 2.24
2158 3058 2.092646 ACAGGGAGTACAAGCACACAAA 60.093 45.455 0.00 0.00 0.00 2.83
2233 3133 7.882791 TGACAATATTGCCTTTTGAGAGAAGTA 59.117 33.333 15.48 0.00 0.00 2.24
2235 3135 7.149569 TGACAATATTGCCTTTTGAGAGAAG 57.850 36.000 15.48 0.00 0.00 2.85
2406 3306 5.553052 ATGTAGGGAAAGGCTGCGTACAG 62.553 52.174 0.00 0.00 45.87 2.74
2527 3441 3.081804 ACAAAATAGGGAAGTCAAGGCG 58.918 45.455 0.00 0.00 0.00 5.52
2576 3490 0.472044 TGCCTTGTGTGCAGGTAAGA 59.528 50.000 0.00 0.00 34.05 2.10
2578 3492 0.106967 TGTGCCTTGTGTGCAGGTAA 60.107 50.000 0.00 0.00 39.87 2.85
2620 3534 7.692460 ATCTTTACTGAAGCAATCATGACAA 57.308 32.000 0.00 0.00 37.44 3.18
2625 3539 8.798859 ACAGTTATCTTTACTGAAGCAATCAT 57.201 30.769 9.74 0.00 44.52 2.45
2806 3720 7.889073 AGCGGAGGAGATATAACTATACTTGAA 59.111 37.037 0.00 0.00 0.00 2.69
2807 3721 7.337184 CAGCGGAGGAGATATAACTATACTTGA 59.663 40.741 0.00 0.00 0.00 3.02
2812 3727 5.756918 AGCAGCGGAGGAGATATAACTATA 58.243 41.667 0.00 0.00 0.00 1.31
3032 3947 3.304726 GCAGCTTACCTGGTTTTGACTTC 60.305 47.826 3.84 0.00 42.03 3.01
3094 4009 2.217750 CACACACACGGGAAGATTCAA 58.782 47.619 0.00 0.00 0.00 2.69
3168 4083 4.233632 TGACTGATATGCACCCATTTGA 57.766 40.909 0.00 0.00 32.85 2.69
3182 4097 7.004086 TGGTAGAAAGGAAACAAATGACTGAT 58.996 34.615 0.00 0.00 0.00 2.90
3348 4266 2.379907 ACCAAACTGACTTCCCATGGAT 59.620 45.455 15.22 0.00 0.00 3.41
3359 4277 1.334869 CAACAGGCTCACCAAACTGAC 59.665 52.381 0.00 0.00 39.06 3.51
3416 4334 0.324614 TGTGATCTGGCATCGTTGGT 59.675 50.000 0.00 0.00 0.00 3.67
3422 4340 3.285484 ACCAAATCTGTGATCTGGCATC 58.715 45.455 0.26 0.00 0.00 3.91
3476 4394 3.887621 TCCGCTAATTTCTGCTGTACT 57.112 42.857 0.00 0.00 0.00 2.73
3477 4395 4.939509 TTTCCGCTAATTTCTGCTGTAC 57.060 40.909 0.00 0.00 0.00 2.90
3478 4396 6.596106 TGTAATTTCCGCTAATTTCTGCTGTA 59.404 34.615 0.00 0.00 0.00 2.74
3479 4397 5.414454 TGTAATTTCCGCTAATTTCTGCTGT 59.586 36.000 0.00 0.00 0.00 4.40
3480 4398 5.879237 TGTAATTTCCGCTAATTTCTGCTG 58.121 37.500 0.00 0.00 0.00 4.41
3481 4399 6.699575 ATGTAATTTCCGCTAATTTCTGCT 57.300 33.333 0.00 0.00 0.00 4.24
3482 4400 6.972328 TCAATGTAATTTCCGCTAATTTCTGC 59.028 34.615 0.00 0.00 31.22 4.26
3483 4401 8.909708 TTCAATGTAATTTCCGCTAATTTCTG 57.090 30.769 0.00 0.00 31.22 3.02
3520 4448 3.871594 AGCAGAATCTTACGCGCTTTAAT 59.128 39.130 5.73 0.00 0.00 1.40
3528 4456 3.679980 TGTGAAGAAGCAGAATCTTACGC 59.320 43.478 0.00 0.00 37.26 4.42
3534 4462 7.437862 CCTATCTAAGTGTGAAGAAGCAGAATC 59.562 40.741 0.00 0.00 0.00 2.52
3549 4477 2.460918 CAACGGCGTCCTATCTAAGTG 58.539 52.381 15.17 0.00 0.00 3.16
3552 4480 1.766494 TCCAACGGCGTCCTATCTAA 58.234 50.000 15.17 0.00 0.00 2.10
3553 4481 1.611977 CATCCAACGGCGTCCTATCTA 59.388 52.381 15.17 0.00 0.00 1.98
3565 4493 4.024048 GGGAGTATAACATTGCATCCAACG 60.024 45.833 0.00 0.00 32.95 4.10
3590 4518 5.782047 CAGGAGCAAAAATTACACCATTGA 58.218 37.500 0.00 0.00 0.00 2.57
3593 4521 3.055891 GGCAGGAGCAAAAATTACACCAT 60.056 43.478 0.00 0.00 44.61 3.55
3595 4523 2.671070 CGGCAGGAGCAAAAATTACACC 60.671 50.000 0.00 0.00 44.61 4.16
3596 4524 2.595386 CGGCAGGAGCAAAAATTACAC 58.405 47.619 0.00 0.00 44.61 2.90
3597 4525 1.067915 GCGGCAGGAGCAAAAATTACA 60.068 47.619 0.00 0.00 44.61 2.41
3598 4526 1.067915 TGCGGCAGGAGCAAAAATTAC 60.068 47.619 0.00 0.00 44.61 1.89
3599 4527 1.202114 CTGCGGCAGGAGCAAAAATTA 59.798 47.619 22.11 0.00 44.67 1.40
3601 4529 1.181098 ACTGCGGCAGGAGCAAAAAT 61.181 50.000 31.38 6.54 44.67 1.82
3602 4530 1.391157 AACTGCGGCAGGAGCAAAAA 61.391 50.000 31.38 0.00 44.67 1.94
3604 4532 2.203337 AACTGCGGCAGGAGCAAA 60.203 55.556 31.38 0.00 44.67 3.68
3605 4533 2.979676 CAACTGCGGCAGGAGCAA 60.980 61.111 31.38 0.00 44.67 3.91
3615 4543 2.353376 CAAACGTGGGCAACTGCG 60.353 61.111 0.00 0.00 43.26 5.18
3616 4544 0.382515 TAACAAACGTGGGCAACTGC 59.617 50.000 0.00 0.00 41.14 4.40
3617 4545 2.853731 TTAACAAACGTGGGCAACTG 57.146 45.000 0.00 0.00 0.00 3.16
3618 4546 2.756207 AGTTTAACAAACGTGGGCAACT 59.244 40.909 0.00 0.00 45.88 3.16
3619 4547 3.153676 AGTTTAACAAACGTGGGCAAC 57.846 42.857 0.00 0.00 45.88 4.17
3621 4549 5.517322 AATAAGTTTAACAAACGTGGGCA 57.483 34.783 0.00 0.00 45.88 5.36
3623 4551 7.988904 TTGAAATAAGTTTAACAAACGTGGG 57.011 32.000 0.00 0.00 45.88 4.61
3624 4552 8.484008 CCATTGAAATAAGTTTAACAAACGTGG 58.516 33.333 0.00 0.00 45.88 4.94
3625 4553 9.026074 ACCATTGAAATAAGTTTAACAAACGTG 57.974 29.630 0.00 0.00 45.88 4.49
3642 4570 7.038659 CGGGAGCAAAAATTATACCATTGAAA 58.961 34.615 0.00 0.00 0.00 2.69
3643 4571 6.568869 CGGGAGCAAAAATTATACCATTGAA 58.431 36.000 0.00 0.00 0.00 2.69
3697 4663 6.568869 CGGGAGCAAAAATTATACCATTGAA 58.431 36.000 0.00 0.00 0.00 2.69
3716 4682 4.200283 GAGAGACTGCGGCGGGAG 62.200 72.222 14.26 11.31 37.67 4.30
3718 4684 4.803426 GTGAGAGACTGCGGCGGG 62.803 72.222 14.26 2.36 0.00 6.13
3719 4685 2.842394 AATGTGAGAGACTGCGGCGG 62.842 60.000 9.78 7.39 0.00 6.13
3720 4686 1.446792 AATGTGAGAGACTGCGGCG 60.447 57.895 0.51 0.51 0.00 6.46
3721 4687 1.364626 CCAATGTGAGAGACTGCGGC 61.365 60.000 0.00 0.00 0.00 6.53
3722 4688 0.036952 ACCAATGTGAGAGACTGCGG 60.037 55.000 0.00 0.00 0.00 5.69
3723 4689 1.800805 AACCAATGTGAGAGACTGCG 58.199 50.000 0.00 0.00 0.00 5.18
3724 4690 5.886960 ATTTAACCAATGTGAGAGACTGC 57.113 39.130 0.00 0.00 0.00 4.40
3725 4691 9.778993 CATAAATTTAACCAATGTGAGAGACTG 57.221 33.333 1.21 0.00 0.00 3.51
3726 4692 8.960591 CCATAAATTTAACCAATGTGAGAGACT 58.039 33.333 1.21 0.00 0.00 3.24
3727 4693 8.739972 ACCATAAATTTAACCAATGTGAGAGAC 58.260 33.333 1.21 0.00 0.00 3.36
3728 4694 8.877864 ACCATAAATTTAACCAATGTGAGAGA 57.122 30.769 1.21 0.00 0.00 3.10
3729 4695 8.739039 TGACCATAAATTTAACCAATGTGAGAG 58.261 33.333 1.21 0.00 0.00 3.20
3730 4696 8.642935 TGACCATAAATTTAACCAATGTGAGA 57.357 30.769 1.21 0.00 0.00 3.27
3731 4697 9.703892 TTTGACCATAAATTTAACCAATGTGAG 57.296 29.630 1.21 0.00 0.00 3.51
3732 4698 9.482627 GTTTGACCATAAATTTAACCAATGTGA 57.517 29.630 1.21 0.00 0.00 3.58
3733 4699 9.487790 AGTTTGACCATAAATTTAACCAATGTG 57.512 29.630 1.21 0.00 0.00 3.21
3793 4759 9.588096 AATGTTTTATTATACTCCCTCCATTCC 57.412 33.333 0.00 0.00 0.00 3.01
3847 4813 6.547510 AGTTCAAATTATGACTAGCCCAATCC 59.452 38.462 0.00 0.00 37.92 3.01
3853 4819 8.827677 ACGAATTAGTTCAAATTATGACTAGCC 58.172 33.333 0.00 0.00 37.92 3.93
3854 4820 9.851043 GACGAATTAGTTCAAATTATGACTAGC 57.149 33.333 0.00 0.00 37.92 3.42
3911 4877 2.954318 CAACCATTATCTCAGCCAAGGG 59.046 50.000 0.00 0.00 0.00 3.95
3934 4900 2.172851 TGTAACGTTACAAGGGCCAG 57.827 50.000 33.00 0.00 40.43 4.85
4014 4980 6.097839 TCAACCACCTTAGGTATACAGATCAC 59.902 42.308 2.52 0.00 42.25 3.06
4038 5004 0.108756 GGCAAGTGGTCTCCGTACTC 60.109 60.000 0.00 0.00 0.00 2.59
4053 5019 8.450578 AGAATATGTTCATCTAATTTCGGCAA 57.549 30.769 4.92 0.00 36.79 4.52
4111 5077 8.975439 CGTACTGTTCTTATTTCACAAGTTACT 58.025 33.333 0.00 0.00 0.00 2.24
4112 5078 8.971321 TCGTACTGTTCTTATTTCACAAGTTAC 58.029 33.333 0.00 0.00 0.00 2.50
4134 5100 1.878070 CACACCGTACTGCCTCGTA 59.122 57.895 0.00 0.00 0.00 3.43
4135 5101 2.649034 CACACCGTACTGCCTCGT 59.351 61.111 0.00 0.00 0.00 4.18
4136 5102 2.809601 GCACACCGTACTGCCTCG 60.810 66.667 0.00 0.00 0.00 4.63
4140 5106 2.203972 TACGAGGCACACCGTACTGC 62.204 60.000 0.00 0.00 42.76 4.40
4141 5107 1.878070 TACGAGGCACACCGTACTG 59.122 57.895 0.00 0.00 42.76 2.74
4142 5108 4.402851 TACGAGGCACACCGTACT 57.597 55.556 0.00 0.00 42.76 2.73
4144 5110 0.890542 ACTGTACGAGGCACACCGTA 60.891 55.000 0.00 0.00 42.76 4.02
4182 5148 3.727726 TCAGCAAAATGAACGAGACTGA 58.272 40.909 0.00 0.00 0.00 3.41
4209 5175 7.624360 TCTTGTCTGACACAAACAAGTTAAT 57.376 32.000 10.56 0.00 44.71 1.40
4274 5240 8.229253 ACGGTACACTTGACATTCATAGTATA 57.771 34.615 0.00 0.00 0.00 1.47
4320 5288 0.109039 GTCCAGTCGTCTCTCTTGGC 60.109 60.000 0.00 0.00 0.00 4.52
4558 5526 1.225376 CTTAGCACGGCCACGAACAA 61.225 55.000 2.24 0.00 44.60 2.83
4566 5534 0.321830 TAACCCAACTTAGCACGGCC 60.322 55.000 0.00 0.00 0.00 6.13
4574 5542 5.599242 CCTTGACCCTTTTTAACCCAACTTA 59.401 40.000 0.00 0.00 0.00 2.24
4647 5615 7.581213 ACAAGGAGTAAAACATCATTTCACA 57.419 32.000 0.00 0.00 0.00 3.58
4675 5646 6.034591 GGAATGAAGCATGAAAGATGAACAG 58.965 40.000 0.00 0.00 0.00 3.16
4684 5655 4.155826 CCAAGTACGGAATGAAGCATGAAA 59.844 41.667 0.00 0.00 0.00 2.69
4695 5666 1.349688 TGCAAGACCCAAGTACGGAAT 59.650 47.619 0.00 0.00 0.00 3.01
4773 5744 7.490840 TGAACTTCAGATGATTTTTGCTCAAA 58.509 30.769 0.00 0.00 0.00 2.69
4844 5815 0.469494 TGCTGGAGTTGAGTTCTGCA 59.531 50.000 0.00 0.00 0.00 4.41
4852 5823 1.300620 CGTCGGTTGCTGGAGTTGA 60.301 57.895 0.00 0.00 0.00 3.18
4990 7923 3.387716 CACAGATGGACGACCCCA 58.612 61.111 0.34 0.00 41.05 4.96
5006 7939 1.005037 GCGTCCATATCCATCGCCA 60.005 57.895 0.00 0.00 40.83 5.69
5080 8014 5.450818 TCAGAAATTGTTATGGCCCTAGT 57.549 39.130 0.00 0.00 0.00 2.57
5086 8020 8.761575 TTTGAGATTTCAGAAATTGTTATGGC 57.238 30.769 9.84 0.00 34.15 4.40
5131 8065 1.215647 CCGAGCAGGTAGGTGACAC 59.784 63.158 0.00 0.00 34.51 3.67
5132 8066 1.982395 CCCGAGCAGGTAGGTGACA 60.982 63.158 0.00 0.00 38.74 3.58
5133 8067 1.982938 ACCCGAGCAGGTAGGTGAC 60.983 63.158 0.00 0.00 38.79 3.67
5135 8069 2.579201 CACCCGAGCAGGTAGGTG 59.421 66.667 6.85 6.85 43.50 4.00
5136 8070 2.683933 CCACCCGAGCAGGTAGGT 60.684 66.667 0.00 0.00 38.39 3.08
5137 8071 3.470888 CCCACCCGAGCAGGTAGG 61.471 72.222 0.00 0.00 38.39 3.18
5139 8073 4.000620 TCCCCACCCGAGCAGGTA 62.001 66.667 0.00 0.00 38.39 3.08
5157 8091 3.386543 CCTGATGGCTAGGGTTTCG 57.613 57.895 0.00 0.00 0.00 3.46
5168 8102 0.693767 AGAAGGAGAGCCCCTGATGG 60.694 60.000 0.00 0.00 36.49 3.51
5169 8103 1.211456 AAGAAGGAGAGCCCCTGATG 58.789 55.000 0.00 0.00 36.49 3.07
5170 8104 1.843206 GAAAGAAGGAGAGCCCCTGAT 59.157 52.381 0.00 0.00 36.49 2.90
5171 8105 1.280457 GAAAGAAGGAGAGCCCCTGA 58.720 55.000 0.00 0.00 36.49 3.86
5172 8106 0.254462 GGAAAGAAGGAGAGCCCCTG 59.746 60.000 0.00 0.00 36.49 4.45
5173 8107 0.916845 GGGAAAGAAGGAGAGCCCCT 60.917 60.000 0.00 0.00 38.42 4.79
5174 8108 0.916845 AGGGAAAGAAGGAGAGCCCC 60.917 60.000 0.00 0.00 36.19 5.80
5175 8109 0.544223 GAGGGAAAGAAGGAGAGCCC 59.456 60.000 0.00 0.00 35.79 5.19
5176 8110 0.544223 GGAGGGAAAGAAGGAGAGCC 59.456 60.000 0.00 0.00 0.00 4.70
5177 8111 0.544223 GGGAGGGAAAGAAGGAGAGC 59.456 60.000 0.00 0.00 0.00 4.09
5178 8112 2.115427 GAGGGAGGGAAAGAAGGAGAG 58.885 57.143 0.00 0.00 0.00 3.20
5179 8113 1.725182 AGAGGGAGGGAAAGAAGGAGA 59.275 52.381 0.00 0.00 0.00 3.71
5180 8114 1.836802 CAGAGGGAGGGAAAGAAGGAG 59.163 57.143 0.00 0.00 0.00 3.69
5181 8115 1.958288 CAGAGGGAGGGAAAGAAGGA 58.042 55.000 0.00 0.00 0.00 3.36
5182 8116 0.254462 GCAGAGGGAGGGAAAGAAGG 59.746 60.000 0.00 0.00 0.00 3.46
5183 8117 0.254462 GGCAGAGGGAGGGAAAGAAG 59.746 60.000 0.00 0.00 0.00 2.85
5184 8118 1.553690 CGGCAGAGGGAGGGAAAGAA 61.554 60.000 0.00 0.00 0.00 2.52
5185 8119 1.990060 CGGCAGAGGGAGGGAAAGA 60.990 63.158 0.00 0.00 0.00 2.52
5186 8120 2.586792 CGGCAGAGGGAGGGAAAG 59.413 66.667 0.00 0.00 0.00 2.62
5187 8121 3.717294 GCGGCAGAGGGAGGGAAA 61.717 66.667 0.00 0.00 0.00 3.13
5191 8125 4.247380 GATGGCGGCAGAGGGAGG 62.247 72.222 19.29 0.00 0.00 4.30
5192 8126 4.598894 CGATGGCGGCAGAGGGAG 62.599 72.222 19.29 0.78 0.00 4.30
5194 8128 4.161295 TTCGATGGCGGCAGAGGG 62.161 66.667 19.29 6.41 38.28 4.30
5195 8129 2.587194 CTTCGATGGCGGCAGAGG 60.587 66.667 19.29 6.89 38.28 3.69
5196 8130 2.587194 CCTTCGATGGCGGCAGAG 60.587 66.667 19.29 13.87 38.28 3.35
5197 8131 3.074369 TCCTTCGATGGCGGCAGA 61.074 61.111 19.29 7.39 38.28 4.26
5198 8132 2.892425 GTCCTTCGATGGCGGCAG 60.892 66.667 19.29 4.62 38.28 4.85
5199 8133 4.812476 CGTCCTTCGATGGCGGCA 62.812 66.667 16.34 16.34 42.86 5.69
5200 8134 4.814294 ACGTCCTTCGATGGCGGC 62.814 66.667 25.83 0.00 42.86 6.53
5201 8135 2.125673 AACGTCCTTCGATGGCGG 60.126 61.111 25.83 17.11 42.86 6.13
5202 8136 3.081133 CAACGTCCTTCGATGGCG 58.919 61.111 22.90 22.90 42.86 5.69
5203 8137 2.785258 GCAACGTCCTTCGATGGC 59.215 61.111 12.42 7.02 41.48 4.40
5204 8138 3.486263 GGCAACGTCCTTCGATGG 58.514 61.111 11.07 11.07 41.48 3.51
5223 8157 1.461461 TGGTCCCTGGGCTATAGGC 60.461 63.158 17.73 17.73 40.90 3.93
5224 8158 1.484444 GCTGGTCCCTGGGCTATAGG 61.484 65.000 8.22 0.00 35.01 2.57
5225 8159 1.821061 CGCTGGTCCCTGGGCTATAG 61.821 65.000 8.22 4.88 0.00 1.31
5226 8160 1.837051 CGCTGGTCCCTGGGCTATA 60.837 63.158 8.22 0.00 0.00 1.31
5227 8161 3.164269 CGCTGGTCCCTGGGCTAT 61.164 66.667 8.22 0.00 0.00 2.97
5255 8189 3.449126 TAGGAGAGGGGGAGGCCC 61.449 72.222 0.00 0.00 44.51 5.80
5256 8190 2.122769 GTAGGAGAGGGGGAGGCC 60.123 72.222 0.00 0.00 0.00 5.19
5257 8191 1.762858 GTGTAGGAGAGGGGGAGGC 60.763 68.421 0.00 0.00 0.00 4.70
5258 8192 1.075151 GGTGTAGGAGAGGGGGAGG 60.075 68.421 0.00 0.00 0.00 4.30
5259 8193 0.266152 ATGGTGTAGGAGAGGGGGAG 59.734 60.000 0.00 0.00 0.00 4.30
5260 8194 0.031111 CATGGTGTAGGAGAGGGGGA 60.031 60.000 0.00 0.00 0.00 4.81
5261 8195 1.056700 CCATGGTGTAGGAGAGGGGG 61.057 65.000 2.57 0.00 0.00 5.40
5262 8196 1.056700 CCCATGGTGTAGGAGAGGGG 61.057 65.000 11.73 0.00 0.00 4.79
5263 8197 1.056700 CCCCATGGTGTAGGAGAGGG 61.057 65.000 11.73 0.00 34.58 4.30
5264 8198 0.031111 TCCCCATGGTGTAGGAGAGG 60.031 60.000 11.73 0.93 0.00 3.69
5265 8199 3.635099 TCCCCATGGTGTAGGAGAG 57.365 57.895 11.73 0.00 0.00 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.