Multiple sequence alignment - TraesCS2B01G302200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G302200 chr2B 100.000 3161 0 0 1 3161 425438572 425441732 0.000000e+00 5838
1 TraesCS2B01G302200 chr2B 82.840 169 25 3 2616 2784 317528987 317528823 7.060000e-32 148
2 TraesCS2B01G302200 chr2B 81.714 175 26 5 2616 2784 715814804 715814630 1.180000e-29 141
3 TraesCS2B01G302200 chr2B 95.349 86 4 0 2837 2922 718968574 718968489 1.530000e-28 137
4 TraesCS2B01G302200 chr2B 95.238 84 4 0 2839 2922 52717885 52717968 1.980000e-27 134
5 TraesCS2B01G302200 chr2B 89.623 106 9 2 2699 2802 590923737 590923632 1.980000e-27 134
6 TraesCS2B01G302200 chr2B 93.023 86 6 0 2837 2922 397451404 397451489 3.310000e-25 126
7 TraesCS2B01G302200 chr2A 92.378 1417 81 12 1218 2618 478908553 478909958 0.000000e+00 1993
8 TraesCS2B01G302200 chr2A 88.190 525 38 19 685 1190 478907953 478908472 3.490000e-169 604
9 TraesCS2B01G302200 chr2A 92.105 380 24 6 62 438 478902817 478903193 6.000000e-147 531
10 TraesCS2B01G302200 chr2A 91.791 134 8 3 2921 3053 478910024 478910155 1.940000e-42 183
11 TraesCS2B01G302200 chr2A 93.814 97 5 1 2687 2782 80477655 80477559 9.140000e-31 145
12 TraesCS2B01G302200 chr2D 90.820 1536 68 29 1 1506 357977358 357978850 0.000000e+00 1988
13 TraesCS2B01G302200 chr2D 91.565 1067 68 11 1562 2618 357978982 357980036 0.000000e+00 1452
14 TraesCS2B01G302200 chr2D 92.537 134 7 3 2921 3053 357980101 357980232 4.160000e-44 189
15 TraesCS2B01G302200 chr7A 94.479 163 9 0 2616 2778 205484636 205484474 5.230000e-63 252
16 TraesCS2B01G302200 chr7A 87.037 162 17 4 2617 2776 205484476 205484635 2.500000e-41 180
17 TraesCS2B01G302200 chr7A 95.960 99 4 0 2610 2708 653596772 653596674 9.070000e-36 161
18 TraesCS2B01G302200 chr7A 97.849 93 2 0 2616 2708 732841418 732841326 9.070000e-36 161
19 TraesCS2B01G302200 chr7A 95.604 91 4 0 2687 2777 287708732 287708642 2.540000e-31 147
20 TraesCS2B01G302200 chr6B 95.050 101 5 0 2608 2708 39364839 39364739 3.260000e-35 159
21 TraesCS2B01G302200 chr5B 94.231 104 5 1 2605 2707 536660183 536660286 1.170000e-34 158
22 TraesCS2B01G302200 chr5B 86.667 120 11 3 2834 2951 224322067 224321951 9.200000e-26 128
23 TraesCS2B01G302200 chr5B 81.560 141 19 7 1050 1188 706348854 706348719 3.330000e-20 110
24 TraesCS2B01G302200 chr1A 93.333 105 7 0 2604 2708 14170051 14170155 4.220000e-34 156
25 TraesCS2B01G302200 chrUn 94.624 93 5 0 2687 2779 32053057 32052965 9.140000e-31 145
26 TraesCS2B01G302200 chr3A 94.624 93 3 2 2699 2789 547196065 547195973 3.290000e-30 143
27 TraesCS2B01G302200 chr7D 93.258 89 6 0 2837 2925 269373342 269373430 7.110000e-27 132
28 TraesCS2B01G302200 chr6D 94.186 86 5 0 2837 2922 362051511 362051426 7.110000e-27 132
29 TraesCS2B01G302200 chr1D 94.186 86 5 0 2837 2922 473539209 473539124 7.110000e-27 132
30 TraesCS2B01G302200 chr3B 90.099 101 9 1 2837 2937 164032674 164032575 2.560000e-26 130
31 TraesCS2B01G302200 chr1B 89.000 100 11 0 2837 2936 156596574 156596673 1.190000e-24 124
32 TraesCS2B01G302200 chr5D 80.667 150 22 7 1050 1197 563967344 563967200 3.330000e-20 110
33 TraesCS2B01G302200 chr4A 81.538 130 20 4 1061 1188 608560916 608561043 1.550000e-18 104
34 TraesCS2B01G302200 chr4A 93.878 49 3 0 1141 1189 623384977 623385025 1.220000e-09 75


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G302200 chr2B 425438572 425441732 3160 False 5838.000000 5838 100.000000 1 3161 1 chr2B.!!$F3 3160
1 TraesCS2B01G302200 chr2A 478907953 478910155 2202 False 926.666667 1993 90.786333 685 3053 3 chr2A.!!$F2 2368
2 TraesCS2B01G302200 chr2D 357977358 357980232 2874 False 1209.666667 1988 91.640667 1 3053 3 chr2D.!!$F1 3052

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
539 559 0.108585 TCTCTCAGCAACCACCCAAC 59.891 55.0 0.0 0.0 0.0 3.77 F
1727 1917 0.310854 CACAGGCCGTTTTCACTTCC 59.689 55.0 0.0 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1791 1995 0.036388 AGCGAGTTGGGTACACATGG 60.036 55.0 0.0 0.0 0.0 3.66 R
2758 2974 0.038744 ACTACTCCCTCCGTTCCGAA 59.961 55.0 0.0 0.0 0.0 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.678056 TTCTGTAGAAGTTGTCGCCAT 57.322 42.857 0.00 0.00 0.00 4.40
62 63 4.546829 AACCATGCTCATGCTTGATTTT 57.453 36.364 2.33 0.00 44.17 1.82
63 64 3.857052 ACCATGCTCATGCTTGATTTTG 58.143 40.909 2.33 1.65 44.17 2.44
64 65 2.607635 CCATGCTCATGCTTGATTTTGC 59.392 45.455 2.33 3.91 44.17 3.68
65 66 3.258228 CATGCTCATGCTTGATTTTGCA 58.742 40.909 14.05 14.05 44.17 4.08
67 68 3.517602 TGCTCATGCTTGATTTTGCATC 58.482 40.909 9.35 0.00 46.65 3.91
68 69 3.194755 TGCTCATGCTTGATTTTGCATCT 59.805 39.130 9.35 0.00 46.65 2.90
88 89 2.281761 AAACGCAGGCTCAGGTGG 60.282 61.111 0.00 0.00 0.00 4.61
96 97 2.116125 GCTCAGGTGGGGCTGTTT 59.884 61.111 0.00 0.00 0.00 2.83
207 208 2.125912 CTGTTCCTCTGGCGGTCG 60.126 66.667 0.00 0.00 0.00 4.79
354 355 3.381983 TCGCTGCACACCTCGGAT 61.382 61.111 0.00 0.00 0.00 4.18
361 362 2.609459 CTGCACACCTCGGATATCAAAC 59.391 50.000 4.83 0.00 0.00 2.93
438 439 6.665992 AATAAGATAGAATGGCGAGGTGTA 57.334 37.500 0.00 0.00 0.00 2.90
466 483 8.879342 TGGATGGTTTGTGTAAATTTAAGTTG 57.121 30.769 0.00 0.00 0.00 3.16
500 520 8.947115 ACTAAGTATGATTTTGTTTCTACCTGC 58.053 33.333 0.00 0.00 0.00 4.85
527 547 8.606040 AAACTCTCTTCTTTTGAATCTCTCAG 57.394 34.615 0.00 0.00 37.85 3.35
532 552 5.471456 TCTTCTTTTGAATCTCTCAGCAACC 59.529 40.000 0.00 0.00 37.85 3.77
533 553 4.717877 TCTTTTGAATCTCTCAGCAACCA 58.282 39.130 0.00 0.00 34.81 3.67
534 554 4.516698 TCTTTTGAATCTCTCAGCAACCAC 59.483 41.667 0.00 0.00 34.81 4.16
535 555 2.479566 TGAATCTCTCAGCAACCACC 57.520 50.000 0.00 0.00 0.00 4.61
536 556 1.003580 TGAATCTCTCAGCAACCACCC 59.996 52.381 0.00 0.00 0.00 4.61
537 557 1.003580 GAATCTCTCAGCAACCACCCA 59.996 52.381 0.00 0.00 0.00 4.51
538 558 1.067295 ATCTCTCAGCAACCACCCAA 58.933 50.000 0.00 0.00 0.00 4.12
539 559 0.108585 TCTCTCAGCAACCACCCAAC 59.891 55.000 0.00 0.00 0.00 3.77
548 568 2.354203 GCAACCACCCAACAAGAAAACA 60.354 45.455 0.00 0.00 0.00 2.83
551 571 1.202359 CCACCCAACAAGAAAACACCG 60.202 52.381 0.00 0.00 0.00 4.94
581 601 4.117661 GAAGTCCTCGCGCTCCGT 62.118 66.667 5.56 0.00 38.35 4.69
582 602 2.749044 AAGTCCTCGCGCTCCGTA 60.749 61.111 5.56 0.00 38.35 4.02
645 671 3.725740 GTGTGCATTCGAAACTGAAACAG 59.274 43.478 0.00 0.00 37.52 3.16
649 675 3.303990 GCATTCGAAACTGAAACAGAGCA 60.304 43.478 0.00 0.00 35.18 4.26
660 686 2.029518 CAGAGCACCTCGCACACA 59.970 61.111 0.00 0.00 46.13 3.72
661 687 2.029666 AGAGCACCTCGCACACAC 59.970 61.111 0.00 0.00 46.13 3.82
662 688 2.280119 GAGCACCTCGCACACACA 60.280 61.111 0.00 0.00 46.13 3.72
665 691 3.014036 CACCTCGCACACACACAC 58.986 61.111 0.00 0.00 0.00 3.82
743 771 3.064408 TCGACGATGCTCACGTTAATAGT 59.936 43.478 0.00 0.00 43.97 2.12
744 772 4.270808 TCGACGATGCTCACGTTAATAGTA 59.729 41.667 0.00 0.00 43.97 1.82
745 773 4.607646 CGACGATGCTCACGTTAATAGTAG 59.392 45.833 0.00 0.00 43.97 2.57
746 774 5.496133 ACGATGCTCACGTTAATAGTAGT 57.504 39.130 0.00 0.00 41.18 2.73
747 775 5.888105 ACGATGCTCACGTTAATAGTAGTT 58.112 37.500 0.00 0.00 41.18 2.24
748 776 5.970023 ACGATGCTCACGTTAATAGTAGTTC 59.030 40.000 0.00 0.00 41.18 3.01
749 777 6.183360 ACGATGCTCACGTTAATAGTAGTTCT 60.183 38.462 0.00 0.00 41.18 3.01
750 778 6.140895 CGATGCTCACGTTAATAGTAGTTCTG 59.859 42.308 0.00 0.00 0.00 3.02
775 803 4.547367 GCGGCCGCCCAGATAACT 62.547 66.667 39.89 0.00 34.56 2.24
799 844 3.277742 GACCGCACGAAACGCAGTC 62.278 63.158 0.00 0.00 45.00 3.51
805 850 3.334751 CGAAACGCAGTCGCCACA 61.335 61.111 0.00 0.00 45.00 4.17
967 1017 1.097232 CCGTCGTAGGGATACACACA 58.903 55.000 0.00 0.00 39.74 3.72
968 1018 1.202222 CCGTCGTAGGGATACACACAC 60.202 57.143 0.00 0.00 39.74 3.82
969 1019 1.741706 CGTCGTAGGGATACACACACT 59.258 52.381 0.00 0.00 39.74 3.55
970 1020 2.477357 CGTCGTAGGGATACACACACTG 60.477 54.545 0.00 0.00 39.74 3.66
971 1021 1.475280 TCGTAGGGATACACACACTGC 59.525 52.381 0.00 0.00 39.74 4.40
972 1022 1.203758 CGTAGGGATACACACACTGCA 59.796 52.381 0.00 0.00 39.74 4.41
1024 1074 2.619941 GATGCTGATGGGCAGGCTGA 62.620 60.000 20.86 0.00 45.75 4.26
1228 1331 1.683917 GTGCATACGTCTCTCCAGGAT 59.316 52.381 0.00 0.00 0.00 3.24
1229 1332 1.683385 TGCATACGTCTCTCCAGGATG 59.317 52.381 0.00 0.00 0.00 3.51
1230 1333 1.604185 GCATACGTCTCTCCAGGATGC 60.604 57.143 0.00 0.00 31.97 3.91
1281 1384 9.170584 GATTTTAGCTAGTTTCTTGTTTGTGTC 57.829 33.333 0.00 0.00 0.00 3.67
1284 1387 4.035675 AGCTAGTTTCTTGTTTGTGTCTGC 59.964 41.667 0.00 0.00 0.00 4.26
1430 1533 2.659610 GCTGACGTCTCCAAGCCT 59.340 61.111 17.92 0.00 0.00 4.58
1495 1598 4.159321 TGGAAGATGTAAGTCTGAGCTGAG 59.841 45.833 0.00 0.00 0.00 3.35
1536 1639 3.243636 CCACAATCTGCAGCCAAATATCC 60.244 47.826 9.47 0.00 0.00 2.59
1570 1760 4.818534 TCTTGAAACAGAAGTGTGCATC 57.181 40.909 0.00 0.00 36.84 3.91
1677 1867 0.538977 TCGAAGAGGTGGAGGACGTT 60.539 55.000 0.00 0.00 0.00 3.99
1693 1883 6.342338 AGGACGTTAACTACTTCAGAACAT 57.658 37.500 3.71 0.00 0.00 2.71
1723 1913 2.335011 GCCACAGGCCGTTTTCAC 59.665 61.111 0.00 0.00 44.06 3.18
1727 1917 0.310854 CACAGGCCGTTTTCACTTCC 59.689 55.000 0.00 0.00 0.00 3.46
1730 1920 0.602905 AGGCCGTTTTCACTTCCTCG 60.603 55.000 0.00 0.00 0.00 4.63
1737 1927 3.548014 CGTTTTCACTTCCTCGCACAAAT 60.548 43.478 0.00 0.00 0.00 2.32
1746 1936 1.750778 CCTCGCACAAATTTAGGGCAT 59.249 47.619 13.02 0.00 0.00 4.40
1770 1974 1.294659 CTGACCTTCTTCTGCGCACC 61.295 60.000 5.66 0.00 0.00 5.01
1791 1995 0.329596 AGGACATCAACTTCTGGGGC 59.670 55.000 0.00 0.00 0.00 5.80
1970 2186 2.192664 AATGCACGGGTACAATGTGA 57.807 45.000 13.53 2.34 35.66 3.58
1973 2189 2.298610 TGCACGGGTACAATGTGAAAA 58.701 42.857 13.53 0.00 35.66 2.29
1991 2207 8.659925 TGTGAAAATGTTGCTAATGTGAAATT 57.340 26.923 0.00 0.00 0.00 1.82
1997 2213 8.970691 AATGTTGCTAATGTGAAATTACTGTC 57.029 30.769 0.00 0.00 0.00 3.51
2109 2325 3.760035 CCAGGGGTGGTCGAGTCG 61.760 72.222 6.09 6.09 0.00 4.18
2158 2374 3.425162 AGGAAGGCGAGATGAAAGTTT 57.575 42.857 0.00 0.00 0.00 2.66
2208 2424 7.148086 ACGAGTTGCCACATGATATTATTGTTT 60.148 33.333 0.00 0.00 0.00 2.83
2452 2668 0.607217 TCCTGACCGTGAAGACGCTA 60.607 55.000 0.00 0.00 44.68 4.26
2476 2692 3.041940 CCTGCAACGACCGACACC 61.042 66.667 0.00 0.00 0.00 4.16
2530 2746 4.308458 TGGTTCACCCAGACGGCG 62.308 66.667 4.80 4.80 38.72 6.46
2553 2769 2.956964 GCGGTCGCCAGAGATTCG 60.957 66.667 3.73 0.00 34.56 3.34
2566 2782 0.625849 AGATTCGGGCCAGGTGAAAT 59.374 50.000 4.39 0.00 0.00 2.17
2567 2783 1.843851 AGATTCGGGCCAGGTGAAATA 59.156 47.619 4.39 0.00 0.00 1.40
2568 2784 2.241176 AGATTCGGGCCAGGTGAAATAA 59.759 45.455 4.39 0.00 0.00 1.40
2583 2799 2.603075 AATAAAGCTGGAGTTGCCCA 57.397 45.000 0.00 0.00 34.97 5.36
2593 2809 1.203052 GGAGTTGCCCATTGTGATGTG 59.797 52.381 0.00 0.00 0.00 3.21
2618 2834 1.215647 CCACTCCGCTGTCTGGTAC 59.784 63.158 0.00 0.00 0.00 3.34
2619 2835 1.251527 CCACTCCGCTGTCTGGTACT 61.252 60.000 0.00 0.00 0.00 2.73
2620 2836 0.171455 CACTCCGCTGTCTGGTACTC 59.829 60.000 0.00 0.00 0.00 2.59
2621 2837 0.966370 ACTCCGCTGTCTGGTACTCC 60.966 60.000 0.00 0.00 0.00 3.85
2622 2838 1.668101 CTCCGCTGTCTGGTACTCCC 61.668 65.000 0.00 0.00 0.00 4.30
2623 2839 1.682684 CCGCTGTCTGGTACTCCCT 60.683 63.158 0.00 0.00 0.00 4.20
2624 2840 1.668101 CCGCTGTCTGGTACTCCCTC 61.668 65.000 0.00 0.00 0.00 4.30
2625 2841 1.668101 CGCTGTCTGGTACTCCCTCC 61.668 65.000 0.00 0.00 0.00 4.30
2626 2842 1.331399 GCTGTCTGGTACTCCCTCCC 61.331 65.000 0.00 0.00 0.00 4.30
2627 2843 0.336737 CTGTCTGGTACTCCCTCCCT 59.663 60.000 0.00 0.00 0.00 4.20
2628 2844 0.790993 TGTCTGGTACTCCCTCCCTT 59.209 55.000 0.00 0.00 0.00 3.95
2629 2845 1.273098 TGTCTGGTACTCCCTCCCTTC 60.273 57.143 0.00 0.00 0.00 3.46
2630 2846 0.338814 TCTGGTACTCCCTCCCTTCC 59.661 60.000 0.00 0.00 0.00 3.46
2631 2847 1.001248 TGGTACTCCCTCCCTTCCG 59.999 63.158 0.00 0.00 0.00 4.30
2632 2848 1.309006 GGTACTCCCTCCCTTCCGA 59.691 63.158 0.00 0.00 0.00 4.55
2633 2849 0.325016 GGTACTCCCTCCCTTCCGAA 60.325 60.000 0.00 0.00 0.00 4.30
2634 2850 1.691801 GGTACTCCCTCCCTTCCGAAT 60.692 57.143 0.00 0.00 0.00 3.34
2635 2851 2.117051 GTACTCCCTCCCTTCCGAATT 58.883 52.381 0.00 0.00 0.00 2.17
2636 2852 2.563039 ACTCCCTCCCTTCCGAATTA 57.437 50.000 0.00 0.00 0.00 1.40
2637 2853 2.117051 ACTCCCTCCCTTCCGAATTAC 58.883 52.381 0.00 0.00 0.00 1.89
2638 2854 2.292984 ACTCCCTCCCTTCCGAATTACT 60.293 50.000 0.00 0.00 0.00 2.24
2639 2855 2.772515 CTCCCTCCCTTCCGAATTACTT 59.227 50.000 0.00 0.00 0.00 2.24
2640 2856 2.504175 TCCCTCCCTTCCGAATTACTTG 59.496 50.000 0.00 0.00 0.00 3.16
2641 2857 2.238898 CCCTCCCTTCCGAATTACTTGT 59.761 50.000 0.00 0.00 0.00 3.16
2642 2858 3.532542 CCTCCCTTCCGAATTACTTGTC 58.467 50.000 0.00 0.00 0.00 3.18
2643 2859 3.197983 CCTCCCTTCCGAATTACTTGTCT 59.802 47.826 0.00 0.00 0.00 3.41
2644 2860 4.323562 CCTCCCTTCCGAATTACTTGTCTT 60.324 45.833 0.00 0.00 0.00 3.01
2645 2861 5.105064 CCTCCCTTCCGAATTACTTGTCTTA 60.105 44.000 0.00 0.00 0.00 2.10
2646 2862 5.974108 TCCCTTCCGAATTACTTGTCTTAG 58.026 41.667 0.00 0.00 0.00 2.18
2647 2863 5.718130 TCCCTTCCGAATTACTTGTCTTAGA 59.282 40.000 0.00 0.00 0.00 2.10
2648 2864 6.383147 TCCCTTCCGAATTACTTGTCTTAGAT 59.617 38.462 0.00 0.00 0.00 1.98
2649 2865 7.048512 CCCTTCCGAATTACTTGTCTTAGATT 58.951 38.462 0.00 0.00 0.00 2.40
2650 2866 7.553044 CCCTTCCGAATTACTTGTCTTAGATTT 59.447 37.037 0.00 0.00 0.00 2.17
2651 2867 8.391106 CCTTCCGAATTACTTGTCTTAGATTTG 58.609 37.037 0.00 0.00 0.00 2.32
2652 2868 8.842358 TTCCGAATTACTTGTCTTAGATTTGT 57.158 30.769 0.00 0.00 0.00 2.83
2653 2869 8.475331 TCCGAATTACTTGTCTTAGATTTGTC 57.525 34.615 0.00 0.00 0.00 3.18
2654 2870 8.311836 TCCGAATTACTTGTCTTAGATTTGTCT 58.688 33.333 0.00 0.00 0.00 3.41
2655 2871 9.582431 CCGAATTACTTGTCTTAGATTTGTCTA 57.418 33.333 0.00 0.00 0.00 2.59
2662 2878 8.407064 ACTTGTCTTAGATTTGTCTAGATACGG 58.593 37.037 0.00 0.00 0.00 4.02
2663 2879 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
2664 2880 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
2665 2881 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
2666 2882 8.569641 GTCTTAGATTTGTCTAGATACGGATGT 58.430 37.037 0.00 0.00 0.00 3.06
2667 2883 9.788889 TCTTAGATTTGTCTAGATACGGATGTA 57.211 33.333 0.00 0.00 34.45 2.29
2684 2900 8.466617 ACGGATGTATCTAGACTCATTTTAGT 57.533 34.615 11.25 7.70 0.00 2.24
2685 2901 8.353684 ACGGATGTATCTAGACTCATTTTAGTG 58.646 37.037 11.25 3.85 0.00 2.74
2686 2902 7.327275 CGGATGTATCTAGACTCATTTTAGTGC 59.673 40.741 11.25 0.00 0.00 4.40
2687 2903 8.364142 GGATGTATCTAGACTCATTTTAGTGCT 58.636 37.037 11.25 0.00 0.00 4.40
2690 2906 9.628500 TGTATCTAGACTCATTTTAGTGCTAGA 57.372 33.333 0.00 0.00 38.76 2.43
2694 2910 9.628500 TCTAGACTCATTTTAGTGCTAGATACA 57.372 33.333 0.00 0.00 34.69 2.29
2697 2913 8.364142 AGACTCATTTTAGTGCTAGATACATCC 58.636 37.037 0.00 0.00 0.00 3.51
2698 2914 7.148641 ACTCATTTTAGTGCTAGATACATCCG 58.851 38.462 0.00 0.00 0.00 4.18
2699 2915 7.050970 TCATTTTAGTGCTAGATACATCCGT 57.949 36.000 0.00 0.00 0.00 4.69
2700 2916 8.173542 TCATTTTAGTGCTAGATACATCCGTA 57.826 34.615 0.00 0.00 0.00 4.02
2701 2917 8.803235 TCATTTTAGTGCTAGATACATCCGTAT 58.197 33.333 0.00 0.00 41.16 3.06
2717 2933 8.466617 ACATCCGTATCTAGACTCATTTTAGT 57.533 34.615 0.00 0.00 0.00 2.24
2718 2934 8.353684 ACATCCGTATCTAGACTCATTTTAGTG 58.646 37.037 0.00 0.00 0.00 2.74
2719 2935 6.736123 TCCGTATCTAGACTCATTTTAGTGC 58.264 40.000 0.00 0.00 0.00 4.40
2720 2936 5.625721 CCGTATCTAGACTCATTTTAGTGCG 59.374 44.000 0.00 0.00 0.00 5.34
2721 2937 6.427974 CGTATCTAGACTCATTTTAGTGCGA 58.572 40.000 0.00 0.00 0.00 5.10
2722 2938 6.575572 CGTATCTAGACTCATTTTAGTGCGAG 59.424 42.308 0.00 0.00 0.00 5.03
2723 2939 6.701145 ATCTAGACTCATTTTAGTGCGAGA 57.299 37.500 0.00 0.00 0.00 4.04
2724 2940 6.701145 TCTAGACTCATTTTAGTGCGAGAT 57.299 37.500 0.00 0.00 0.00 2.75
2725 2941 7.803279 TCTAGACTCATTTTAGTGCGAGATA 57.197 36.000 0.00 0.00 0.00 1.98
2726 2942 7.640852 TCTAGACTCATTTTAGTGCGAGATAC 58.359 38.462 0.00 0.00 0.00 2.24
2727 2943 6.208988 AGACTCATTTTAGTGCGAGATACA 57.791 37.500 0.00 0.00 0.00 2.29
2728 2944 6.810911 AGACTCATTTTAGTGCGAGATACAT 58.189 36.000 0.00 0.00 0.00 2.29
2729 2945 6.920758 AGACTCATTTTAGTGCGAGATACATC 59.079 38.462 0.00 0.00 0.00 3.06
2730 2946 5.986135 ACTCATTTTAGTGCGAGATACATCC 59.014 40.000 0.00 0.00 0.00 3.51
2731 2947 4.982295 TCATTTTAGTGCGAGATACATCCG 59.018 41.667 0.00 0.00 0.00 4.18
2732 2948 4.380841 TTTTAGTGCGAGATACATCCGT 57.619 40.909 0.00 0.00 0.00 4.69
2733 2949 5.503662 TTTTAGTGCGAGATACATCCGTA 57.496 39.130 0.00 0.00 0.00 4.02
2734 2950 5.700722 TTTAGTGCGAGATACATCCGTAT 57.299 39.130 0.00 0.00 41.16 3.06
2747 2963 7.776618 ATACATCCGTATCTAGACAAATCCA 57.223 36.000 0.00 0.00 32.66 3.41
2748 2964 6.479972 ACATCCGTATCTAGACAAATCCAA 57.520 37.500 0.00 0.00 0.00 3.53
2749 2965 6.516718 ACATCCGTATCTAGACAAATCCAAG 58.483 40.000 0.00 0.00 0.00 3.61
2750 2966 6.323996 ACATCCGTATCTAGACAAATCCAAGA 59.676 38.462 0.00 0.00 0.00 3.02
2751 2967 6.145338 TCCGTATCTAGACAAATCCAAGAC 57.855 41.667 0.00 0.00 0.00 3.01
2752 2968 5.655090 TCCGTATCTAGACAAATCCAAGACA 59.345 40.000 0.00 0.00 0.00 3.41
2753 2969 6.153851 TCCGTATCTAGACAAATCCAAGACAA 59.846 38.462 0.00 0.00 0.00 3.18
2754 2970 6.477033 CCGTATCTAGACAAATCCAAGACAAG 59.523 42.308 0.00 0.00 0.00 3.16
2755 2971 7.036220 CGTATCTAGACAAATCCAAGACAAGT 58.964 38.462 0.00 0.00 0.00 3.16
2756 2972 8.188799 CGTATCTAGACAAATCCAAGACAAGTA 58.811 37.037 0.00 0.00 0.00 2.24
2757 2973 9.871238 GTATCTAGACAAATCCAAGACAAGTAA 57.129 33.333 0.00 0.00 0.00 2.24
2759 2975 9.965902 ATCTAGACAAATCCAAGACAAGTAATT 57.034 29.630 0.00 0.00 0.00 1.40
2760 2976 9.436957 TCTAGACAAATCCAAGACAAGTAATTC 57.563 33.333 0.00 0.00 0.00 2.17
2761 2977 7.133891 AGACAAATCCAAGACAAGTAATTCG 57.866 36.000 0.00 0.00 0.00 3.34
2762 2978 6.149474 AGACAAATCCAAGACAAGTAATTCGG 59.851 38.462 0.00 0.00 0.00 4.30
2763 2979 6.001460 ACAAATCCAAGACAAGTAATTCGGA 58.999 36.000 0.00 0.00 0.00 4.55
2764 2980 6.488683 ACAAATCCAAGACAAGTAATTCGGAA 59.511 34.615 0.00 0.00 0.00 4.30
2765 2981 6.496338 AATCCAAGACAAGTAATTCGGAAC 57.504 37.500 0.00 0.00 0.00 3.62
2787 3003 4.411540 ACGGAGGGAGTAGTAGTAAGATGA 59.588 45.833 0.00 0.00 0.00 2.92
2821 3038 7.115947 GTCGAACTAAAACTGCTTGTGTACTAT 59.884 37.037 0.00 0.00 0.00 2.12
2822 3039 8.298854 TCGAACTAAAACTGCTTGTGTACTATA 58.701 33.333 0.00 0.00 0.00 1.31
2823 3040 9.084164 CGAACTAAAACTGCTTGTGTACTATAT 57.916 33.333 0.00 0.00 0.00 0.86
2825 3042 9.720769 AACTAAAACTGCTTGTGTACTATATGT 57.279 29.630 0.00 0.00 0.00 2.29
2826 3043 9.367444 ACTAAAACTGCTTGTGTACTATATGTC 57.633 33.333 0.00 0.00 0.00 3.06
2835 3053 5.464069 TGTGTACTATATGTCCCATGGTCT 58.536 41.667 11.73 0.00 0.00 3.85
2836 3054 5.903010 TGTGTACTATATGTCCCATGGTCTT 59.097 40.000 11.73 4.59 0.00 3.01
2837 3055 6.041637 TGTGTACTATATGTCCCATGGTCTTC 59.958 42.308 11.73 0.00 0.00 2.87
2838 3056 5.542635 TGTACTATATGTCCCATGGTCTTCC 59.457 44.000 11.73 0.00 0.00 3.46
2839 3057 3.910627 ACTATATGTCCCATGGTCTTCCC 59.089 47.826 11.73 0.00 0.00 3.97
2852 3070 5.319043 TGGTCTTCCCAAAATAAGTGTCT 57.681 39.130 0.00 0.00 41.50 3.41
2853 3071 5.701224 TGGTCTTCCCAAAATAAGTGTCTT 58.299 37.500 0.00 0.00 41.50 3.01
2854 3072 6.843752 TGGTCTTCCCAAAATAAGTGTCTTA 58.156 36.000 0.00 0.00 41.50 2.10
2855 3073 7.291566 TGGTCTTCCCAAAATAAGTGTCTTAA 58.708 34.615 0.00 0.00 41.50 1.85
2856 3074 7.447238 TGGTCTTCCCAAAATAAGTGTCTTAAG 59.553 37.037 0.00 0.00 41.50 1.85
2857 3075 7.306213 GTCTTCCCAAAATAAGTGTCTTAAGC 58.694 38.462 0.00 0.00 0.00 3.09
2858 3076 7.175119 GTCTTCCCAAAATAAGTGTCTTAAGCT 59.825 37.037 0.00 0.00 0.00 3.74
2859 3077 7.724061 TCTTCCCAAAATAAGTGTCTTAAGCTT 59.276 33.333 3.48 3.48 0.00 3.74
2860 3078 8.927675 TTCCCAAAATAAGTGTCTTAAGCTTA 57.072 30.769 0.86 0.86 0.00 3.09
2861 3079 8.927675 TCCCAAAATAAGTGTCTTAAGCTTAA 57.072 30.769 17.71 17.71 0.00 1.85
2862 3080 9.528489 TCCCAAAATAAGTGTCTTAAGCTTAAT 57.472 29.630 18.93 6.21 0.00 1.40
2881 3099 9.566432 AGCTTAATATAAATTTGTGCTAGAGCT 57.434 29.630 0.00 5.13 42.66 4.09
2891 3109 9.892130 AAATTTGTGCTAGAGCTAGTATAAAGT 57.108 29.630 17.31 13.94 40.16 2.66
2892 3110 9.892130 AATTTGTGCTAGAGCTAGTATAAAGTT 57.108 29.630 17.31 11.51 40.16 2.66
2896 3114 9.404848 TGTGCTAGAGCTAGTATAAAGTTAAGA 57.595 33.333 2.72 0.00 42.66 2.10
2897 3115 9.667989 GTGCTAGAGCTAGTATAAAGTTAAGAC 57.332 37.037 2.72 0.00 42.66 3.01
2898 3116 9.404848 TGCTAGAGCTAGTATAAAGTTAAGACA 57.595 33.333 2.72 0.00 42.66 3.41
2899 3117 9.667989 GCTAGAGCTAGTATAAAGTTAAGACAC 57.332 37.037 6.41 0.00 38.21 3.67
2912 3130 6.796705 AGTTAAGACACTTATTTTGGGACG 57.203 37.500 0.00 0.00 0.00 4.79
2913 3131 5.704053 AGTTAAGACACTTATTTTGGGACGG 59.296 40.000 0.00 0.00 0.00 4.79
2914 3132 4.360951 AAGACACTTATTTTGGGACGGA 57.639 40.909 0.00 0.00 0.00 4.69
2915 3133 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
2916 3134 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2917 3135 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
2918 3136 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2919 3137 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2923 3141 0.978907 TTTGGGACGGAGGGAGTAAC 59.021 55.000 0.00 0.00 0.00 2.50
2925 3143 0.324091 TGGGACGGAGGGAGTAACTC 60.324 60.000 0.00 0.00 0.00 3.01
2932 3150 1.478916 GGAGGGAGTAACTCAGAGTGC 59.521 57.143 3.05 0.37 36.70 4.40
2984 3202 2.547855 CGTCTGAAATCCAGTGGACACA 60.548 50.000 15.86 13.53 43.38 3.72
3037 3257 5.755813 CATGAAACTTCCACTTCTGAGTTG 58.244 41.667 0.00 0.00 32.54 3.16
3047 3267 2.224523 ACTTCTGAGTTGCCGAATTGGA 60.225 45.455 0.00 0.00 33.45 3.53
3053 3273 4.954875 TGAGTTGCCGAATTGGAAATTTT 58.045 34.783 0.00 0.00 37.69 1.82
3054 3274 4.749099 TGAGTTGCCGAATTGGAAATTTTG 59.251 37.500 0.00 0.00 37.69 2.44
3055 3275 4.064388 AGTTGCCGAATTGGAAATTTTGG 58.936 39.130 0.00 0.00 37.69 3.28
3056 3276 3.051081 TGCCGAATTGGAAATTTTGGG 57.949 42.857 0.00 0.00 42.00 4.12
3057 3277 2.289945 TGCCGAATTGGAAATTTTGGGG 60.290 45.455 0.00 0.00 42.00 4.96
3058 3278 2.939198 GCCGAATTGGAAATTTTGGGGG 60.939 50.000 0.00 0.00 42.00 5.40
3079 3299 3.520550 GGGGGTGGGGACATTCTT 58.479 61.111 0.00 0.00 46.14 2.52
3080 3300 1.781001 GGGGGTGGGGACATTCTTT 59.219 57.895 0.00 0.00 46.14 2.52
3081 3301 0.324368 GGGGGTGGGGACATTCTTTC 60.324 60.000 0.00 0.00 46.14 2.62
3082 3302 0.679960 GGGGTGGGGACATTCTTTCG 60.680 60.000 0.00 0.00 46.14 3.46
3083 3303 0.679960 GGGTGGGGACATTCTTTCGG 60.680 60.000 0.00 0.00 46.14 4.30
3084 3304 0.326927 GGTGGGGACATTCTTTCGGA 59.673 55.000 0.00 0.00 46.14 4.55
3085 3305 1.450025 GTGGGGACATTCTTTCGGAC 58.550 55.000 0.00 0.00 46.14 4.79
3086 3306 1.060729 TGGGGACATTCTTTCGGACA 58.939 50.000 0.00 0.00 33.40 4.02
3087 3307 1.003118 TGGGGACATTCTTTCGGACAG 59.997 52.381 0.00 0.00 33.40 3.51
3088 3308 1.278127 GGGGACATTCTTTCGGACAGA 59.722 52.381 0.00 0.00 0.00 3.41
3089 3309 2.622436 GGGACATTCTTTCGGACAGAG 58.378 52.381 0.00 0.00 0.00 3.35
3090 3310 2.622436 GGACATTCTTTCGGACAGAGG 58.378 52.381 0.00 0.00 0.00 3.69
3091 3311 2.622436 GACATTCTTTCGGACAGAGGG 58.378 52.381 0.00 0.00 0.00 4.30
3092 3312 2.233922 GACATTCTTTCGGACAGAGGGA 59.766 50.000 0.00 0.00 0.00 4.20
3093 3313 2.234908 ACATTCTTTCGGACAGAGGGAG 59.765 50.000 0.00 0.00 0.00 4.30
3094 3314 0.608640 TTCTTTCGGACAGAGGGAGC 59.391 55.000 0.00 0.00 0.00 4.70
3095 3315 0.541998 TCTTTCGGACAGAGGGAGCA 60.542 55.000 0.00 0.00 0.00 4.26
3096 3316 0.390472 CTTTCGGACAGAGGGAGCAC 60.390 60.000 0.00 0.00 0.00 4.40
3097 3317 1.118965 TTTCGGACAGAGGGAGCACA 61.119 55.000 0.00 0.00 0.00 4.57
3098 3318 1.118965 TTCGGACAGAGGGAGCACAA 61.119 55.000 0.00 0.00 0.00 3.33
3099 3319 1.118965 TCGGACAGAGGGAGCACAAA 61.119 55.000 0.00 0.00 0.00 2.83
3100 3320 0.951040 CGGACAGAGGGAGCACAAAC 60.951 60.000 0.00 0.00 0.00 2.93
3101 3321 0.108585 GGACAGAGGGAGCACAAACA 59.891 55.000 0.00 0.00 0.00 2.83
3102 3322 1.271597 GGACAGAGGGAGCACAAACAT 60.272 52.381 0.00 0.00 0.00 2.71
3103 3323 2.508526 GACAGAGGGAGCACAAACATT 58.491 47.619 0.00 0.00 0.00 2.71
3104 3324 2.485814 GACAGAGGGAGCACAAACATTC 59.514 50.000 0.00 0.00 0.00 2.67
3105 3325 2.107204 ACAGAGGGAGCACAAACATTCT 59.893 45.455 0.00 0.00 0.00 2.40
3106 3326 2.486982 CAGAGGGAGCACAAACATTCTG 59.513 50.000 0.00 0.00 0.00 3.02
3107 3327 1.815003 GAGGGAGCACAAACATTCTGG 59.185 52.381 0.00 0.00 0.00 3.86
3108 3328 1.425066 AGGGAGCACAAACATTCTGGA 59.575 47.619 0.00 0.00 0.00 3.86
3109 3329 2.158475 AGGGAGCACAAACATTCTGGAA 60.158 45.455 0.00 0.00 0.00 3.53
3110 3330 2.029918 GGGAGCACAAACATTCTGGAAC 60.030 50.000 0.00 0.00 0.00 3.62
3111 3331 2.029918 GGAGCACAAACATTCTGGAACC 60.030 50.000 0.00 0.00 0.00 3.62
3112 3332 2.622942 GAGCACAAACATTCTGGAACCA 59.377 45.455 0.00 0.00 0.00 3.67
3113 3333 2.624838 AGCACAAACATTCTGGAACCAG 59.375 45.455 14.01 14.01 44.86 4.00
3114 3334 2.288395 GCACAAACATTCTGGAACCAGG 60.288 50.000 18.99 7.39 43.75 4.45
3115 3335 2.297033 CACAAACATTCTGGAACCAGGG 59.703 50.000 18.99 12.08 43.75 4.45
3116 3336 1.895131 CAAACATTCTGGAACCAGGGG 59.105 52.381 18.99 11.78 43.75 4.79
3117 3337 0.409484 AACATTCTGGAACCAGGGGG 59.591 55.000 18.99 11.49 43.75 5.40
3118 3338 1.380380 CATTCTGGAACCAGGGGGC 60.380 63.158 18.99 0.00 43.75 5.80
3119 3339 1.856873 ATTCTGGAACCAGGGGGCA 60.857 57.895 18.99 0.00 43.75 5.36
3120 3340 2.155197 ATTCTGGAACCAGGGGGCAC 62.155 60.000 18.99 0.00 43.75 5.01
3121 3341 4.722700 CTGGAACCAGGGGGCACG 62.723 72.222 12.54 0.00 40.17 5.34
3124 3344 4.740822 GAACCAGGGGGCACGCAT 62.741 66.667 5.55 0.00 45.96 4.73
3136 3356 3.445687 ACGCATGCGGACCGAGTA 61.446 61.111 39.95 2.87 44.69 2.59
3137 3357 2.027605 CGCATGCGGACCGAGTAT 59.972 61.111 31.99 5.44 35.56 2.12
3138 3358 2.016704 CGCATGCGGACCGAGTATC 61.017 63.158 31.99 0.00 35.56 2.24
3139 3359 1.067416 GCATGCGGACCGAGTATCA 59.933 57.895 20.50 5.75 33.17 2.15
3140 3360 1.215655 GCATGCGGACCGAGTATCAC 61.216 60.000 20.50 0.00 33.17 3.06
3141 3361 0.102300 CATGCGGACCGAGTATCACA 59.898 55.000 20.50 4.08 33.17 3.58
3142 3362 0.821517 ATGCGGACCGAGTATCACAA 59.178 50.000 20.50 0.00 33.17 3.33
3143 3363 0.604073 TGCGGACCGAGTATCACAAA 59.396 50.000 20.50 0.00 33.17 2.83
3144 3364 1.278238 GCGGACCGAGTATCACAAAG 58.722 55.000 20.50 0.00 33.17 2.77
3145 3365 1.922570 CGGACCGAGTATCACAAAGG 58.077 55.000 8.64 0.00 33.17 3.11
3146 3366 1.475280 CGGACCGAGTATCACAAAGGA 59.525 52.381 8.64 0.00 33.17 3.36
3147 3367 2.479730 CGGACCGAGTATCACAAAGGAG 60.480 54.545 8.64 0.00 33.17 3.69
3148 3368 2.541556 GACCGAGTATCACAAAGGAGC 58.458 52.381 0.00 0.00 33.17 4.70
3149 3369 1.899814 ACCGAGTATCACAAAGGAGCA 59.100 47.619 0.00 0.00 33.17 4.26
3150 3370 2.501723 ACCGAGTATCACAAAGGAGCAT 59.498 45.455 0.00 0.00 33.17 3.79
3151 3371 3.055094 ACCGAGTATCACAAAGGAGCATT 60.055 43.478 0.00 0.00 33.17 3.56
3152 3372 4.161565 ACCGAGTATCACAAAGGAGCATTA 59.838 41.667 0.00 0.00 33.17 1.90
3153 3373 4.508124 CCGAGTATCACAAAGGAGCATTAC 59.492 45.833 0.00 0.00 33.17 1.89
3154 3374 5.352284 CGAGTATCACAAAGGAGCATTACT 58.648 41.667 0.00 0.00 33.17 2.24
3155 3375 5.460419 CGAGTATCACAAAGGAGCATTACTC 59.540 44.000 0.00 0.00 39.04 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 6.623486 CATGAGCATGGTTTGATTCTGTAAA 58.377 36.000 0.00 0.00 35.24 2.01
88 89 2.983592 CACCACCGGAAACAGCCC 60.984 66.667 9.46 0.00 0.00 5.19
129 130 2.474266 CAAACGGCGTCCACGATG 59.526 61.111 15.17 2.23 43.02 3.84
276 277 2.420890 CTCCTCGCCCTCATCTGC 59.579 66.667 0.00 0.00 0.00 4.26
348 349 3.819337 TCTACTCCCGTTTGATATCCGAG 59.181 47.826 0.00 0.00 0.00 4.63
354 355 4.023450 CGTAGCATCTACTCCCGTTTGATA 60.023 45.833 2.96 0.00 0.00 2.15
361 362 1.306148 TCACGTAGCATCTACTCCCG 58.694 55.000 0.00 0.00 0.00 5.14
438 439 9.088987 ACTTAAATTTACACAAACCATCCATCT 57.911 29.630 0.00 0.00 0.00 2.90
466 483 6.531439 ACAAAATCATACTTAGTTCGAACGC 58.469 36.000 21.87 0.00 0.00 4.84
500 520 8.834465 TGAGAGATTCAAAAGAAGAGAGTTTTG 58.166 33.333 1.89 1.89 42.53 2.44
527 547 2.276201 GTTTTCTTGTTGGGTGGTTGC 58.724 47.619 0.00 0.00 0.00 4.17
532 552 1.474879 ACGGTGTTTTCTTGTTGGGTG 59.525 47.619 0.00 0.00 0.00 4.61
533 553 1.842052 ACGGTGTTTTCTTGTTGGGT 58.158 45.000 0.00 0.00 0.00 4.51
534 554 2.425668 AGAACGGTGTTTTCTTGTTGGG 59.574 45.455 0.00 0.00 28.36 4.12
535 555 3.775661 AGAACGGTGTTTTCTTGTTGG 57.224 42.857 0.00 0.00 28.36 3.77
536 556 5.631512 TCAAAAGAACGGTGTTTTCTTGTTG 59.368 36.000 5.18 8.84 41.48 3.33
537 557 5.774630 TCAAAAGAACGGTGTTTTCTTGTT 58.225 33.333 5.18 0.00 41.48 2.83
538 558 5.379732 TCAAAAGAACGGTGTTTTCTTGT 57.620 34.783 5.18 0.00 41.48 3.16
539 559 6.237808 CCATTCAAAAGAACGGTGTTTTCTTG 60.238 38.462 5.18 4.15 41.48 3.02
548 568 3.568430 GGACTTCCATTCAAAAGAACGGT 59.432 43.478 0.00 0.00 35.64 4.83
551 571 4.613850 GCGAGGACTTCCATTCAAAAGAAC 60.614 45.833 0.00 0.00 38.89 3.01
569 589 0.309922 TCTAAATACGGAGCGCGAGG 59.690 55.000 12.10 0.00 0.00 4.63
582 602 7.805071 CGCTGTGAACAAATCTTCTTTCTAAAT 59.195 33.333 0.00 0.00 0.00 1.40
607 633 1.140161 CACCCATCCATTTGCAGCG 59.860 57.895 0.00 0.00 0.00 5.18
645 671 2.280119 TGTGTGTGCGAGGTGCTC 60.280 61.111 0.00 0.00 46.63 4.26
649 675 0.675208 TTTGTGTGTGTGTGCGAGGT 60.675 50.000 0.00 0.00 0.00 3.85
676 702 7.694388 ATGCTCCGTTTAAGTTTTTCTTTTC 57.306 32.000 0.00 0.00 37.56 2.29
677 703 8.192110 TGTATGCTCCGTTTAAGTTTTTCTTTT 58.808 29.630 0.00 0.00 37.56 2.27
678 704 7.708998 TGTATGCTCCGTTTAAGTTTTTCTTT 58.291 30.769 0.00 0.00 37.56 2.52
679 705 7.266922 TGTATGCTCCGTTTAAGTTTTTCTT 57.733 32.000 0.00 0.00 39.89 2.52
680 706 6.870971 TGTATGCTCCGTTTAAGTTTTTCT 57.129 33.333 0.00 0.00 0.00 2.52
681 707 6.085849 CGTTGTATGCTCCGTTTAAGTTTTTC 59.914 38.462 0.00 0.00 0.00 2.29
682 708 5.910723 CGTTGTATGCTCCGTTTAAGTTTTT 59.089 36.000 0.00 0.00 0.00 1.94
683 709 5.445845 CGTTGTATGCTCCGTTTAAGTTTT 58.554 37.500 0.00 0.00 0.00 2.43
689 715 2.008045 GCCCGTTGTATGCTCCGTTTA 61.008 52.381 0.00 0.00 0.00 2.01
694 720 0.107654 AGAAGCCCGTTGTATGCTCC 60.108 55.000 0.00 0.00 33.36 4.70
743 771 1.298157 GCCGCATGCACACAGAACTA 61.298 55.000 19.57 0.00 40.77 2.24
744 772 2.620112 GCCGCATGCACACAGAACT 61.620 57.895 19.57 0.00 40.77 3.01
745 773 2.126734 GCCGCATGCACACAGAAC 60.127 61.111 19.57 0.00 40.77 3.01
746 774 3.364441 GGCCGCATGCACACAGAA 61.364 61.111 19.57 0.00 43.89 3.02
775 803 0.229247 CGTTTCGTGCGGTCGTTTTA 59.771 50.000 0.00 0.00 0.00 1.52
889 934 1.454663 GCAGGATCCTCCTTTGGGC 60.455 63.158 12.69 6.77 46.91 5.36
940 990 2.707849 CCCTACGACGGTGGACCTG 61.708 68.421 9.51 0.00 0.00 4.00
947 997 1.098050 GTGTGTATCCCTACGACGGT 58.902 55.000 0.00 0.00 0.00 4.83
988 1038 1.663379 ATCGTCATCGGCGTCCTTGA 61.663 55.000 6.85 3.66 37.69 3.02
1056 1106 1.153667 GAGGAAGAGCACGAGCAGG 60.154 63.158 7.77 0.00 45.49 4.85
1173 1223 1.371183 GCATACCTCGCCTATGCCA 59.629 57.895 7.28 0.00 40.39 4.92
1208 1311 1.103803 TCCTGGAGAGACGTATGCAC 58.896 55.000 0.00 0.00 0.00 4.57
1209 1312 1.683385 CATCCTGGAGAGACGTATGCA 59.317 52.381 1.52 0.00 0.00 3.96
1228 1331 4.332543 CGTATAGAAAAGGTGAAGCATGCA 59.667 41.667 21.98 0.00 0.00 3.96
1229 1332 4.260784 CCGTATAGAAAAGGTGAAGCATGC 60.261 45.833 10.51 10.51 0.00 4.06
1230 1333 4.876107 ACCGTATAGAAAAGGTGAAGCATG 59.124 41.667 0.00 0.00 35.36 4.06
1281 1384 2.124983 ATACGCCAGGTGCTGCAG 60.125 61.111 10.11 10.11 38.05 4.41
1284 1387 0.459899 TACTCATACGCCAGGTGCTG 59.540 55.000 0.00 0.00 38.05 4.41
1356 1459 3.692406 GTTGTCGGCGACCTCCCT 61.692 66.667 34.28 0.00 0.00 4.20
1394 1497 2.383527 CGGCAAGACAAGGACGCTC 61.384 63.158 0.00 0.00 0.00 5.03
1430 1533 0.103390 TGAACTTTCGGCAGTCGTCA 59.897 50.000 0.00 0.00 40.32 4.35
1512 1615 2.284754 TTTGGCTGCAGATTGTGGTA 57.715 45.000 20.43 0.00 0.00 3.25
1677 1867 8.590204 TGTACCATCAATGTTCTGAAGTAGTTA 58.410 33.333 0.00 0.00 0.00 2.24
1693 1883 2.513753 CCTGTGGCTTTGTACCATCAA 58.486 47.619 0.00 0.00 39.95 2.57
1723 1913 2.159379 GCCCTAAATTTGTGCGAGGAAG 60.159 50.000 0.00 0.00 0.00 3.46
1727 1917 2.423185 TCATGCCCTAAATTTGTGCGAG 59.577 45.455 0.00 0.00 0.00 5.03
1730 1920 4.807304 CAGATTCATGCCCTAAATTTGTGC 59.193 41.667 0.00 1.36 0.00 4.57
1737 1927 4.228210 AGAAGGTCAGATTCATGCCCTAAA 59.772 41.667 0.00 0.00 0.00 1.85
1746 1936 2.932622 GCGCAGAAGAAGGTCAGATTCA 60.933 50.000 0.30 0.00 0.00 2.57
1759 1963 0.176680 ATGTCCTAGGTGCGCAGAAG 59.823 55.000 12.22 8.61 0.00 2.85
1770 1974 2.420687 GCCCCAGAAGTTGATGTCCTAG 60.421 54.545 0.00 0.00 0.00 3.02
1791 1995 0.036388 AGCGAGTTGGGTACACATGG 60.036 55.000 0.00 0.00 0.00 3.66
1970 2186 9.762933 ACAGTAATTTCACATTAGCAACATTTT 57.237 25.926 0.00 0.00 0.00 1.82
1973 2189 7.094805 ACGACAGTAATTTCACATTAGCAACAT 60.095 33.333 0.00 0.00 0.00 2.71
1991 2207 1.155889 CTGCCATGCAAACGACAGTA 58.844 50.000 0.00 0.00 38.41 2.74
1997 2213 3.672255 CTCGCCTGCCATGCAAACG 62.672 63.158 0.00 4.56 38.41 3.60
2109 2325 3.549794 CATCTTCCCCTTTGTGATCTCC 58.450 50.000 0.00 0.00 0.00 3.71
2158 2374 5.221362 TGTTACATCTCTTTCGTCTTGGTCA 60.221 40.000 0.00 0.00 0.00 4.02
2208 2424 0.966179 ATATGATGCTACCGCGGTCA 59.034 50.000 38.01 28.16 39.65 4.02
2476 2692 0.101399 CGAGGATCTGTCTTCCCACG 59.899 60.000 0.00 0.00 33.45 4.94
2545 2761 0.909610 TTCACCTGGCCCGAATCTCT 60.910 55.000 0.00 0.00 0.00 3.10
2553 2769 1.478105 CAGCTTTATTTCACCTGGCCC 59.522 52.381 0.00 0.00 0.00 5.80
2566 2782 2.170166 CAATGGGCAACTCCAGCTTTA 58.830 47.619 0.00 0.00 40.56 1.85
2567 2783 0.971386 CAATGGGCAACTCCAGCTTT 59.029 50.000 0.00 0.00 40.56 3.51
2568 2784 0.178953 ACAATGGGCAACTCCAGCTT 60.179 50.000 0.00 0.00 40.56 3.74
2576 2792 3.818586 CCACATCACAATGGGCAAC 57.181 52.632 0.00 0.00 34.74 4.17
2583 2799 3.288099 GGGCTTCCCACATCACAAT 57.712 52.632 0.00 0.00 44.65 2.71
2593 2809 4.785453 CAGCGGAGTGGGCTTCCC 62.785 72.222 0.00 0.00 45.71 3.97
2605 2821 1.668101 GAGGGAGTACCAGACAGCGG 61.668 65.000 0.00 0.00 43.89 5.52
2608 2824 0.336737 AGGGAGGGAGTACCAGACAG 59.663 60.000 0.00 0.00 43.89 3.51
2618 2834 2.399580 AGTAATTCGGAAGGGAGGGAG 58.600 52.381 0.00 0.00 0.00 4.30
2619 2835 2.504175 CAAGTAATTCGGAAGGGAGGGA 59.496 50.000 0.00 0.00 0.00 4.20
2620 2836 2.238898 ACAAGTAATTCGGAAGGGAGGG 59.761 50.000 0.00 0.00 0.00 4.30
2621 2837 3.197983 AGACAAGTAATTCGGAAGGGAGG 59.802 47.826 0.00 0.00 0.00 4.30
2622 2838 4.473477 AGACAAGTAATTCGGAAGGGAG 57.527 45.455 0.00 0.00 0.00 4.30
2623 2839 4.903045 AAGACAAGTAATTCGGAAGGGA 57.097 40.909 0.00 0.00 0.00 4.20
2624 2840 5.974108 TCTAAGACAAGTAATTCGGAAGGG 58.026 41.667 0.00 0.00 0.00 3.95
2625 2841 8.391106 CAAATCTAAGACAAGTAATTCGGAAGG 58.609 37.037 0.00 0.00 0.00 3.46
2626 2842 8.936864 ACAAATCTAAGACAAGTAATTCGGAAG 58.063 33.333 0.00 0.00 0.00 3.46
2627 2843 8.842358 ACAAATCTAAGACAAGTAATTCGGAA 57.158 30.769 0.00 0.00 0.00 4.30
2628 2844 8.311836 AGACAAATCTAAGACAAGTAATTCGGA 58.688 33.333 0.00 0.00 31.46 4.55
2629 2845 8.480643 AGACAAATCTAAGACAAGTAATTCGG 57.519 34.615 0.00 0.00 31.46 4.30
2636 2852 8.407064 CCGTATCTAGACAAATCTAAGACAAGT 58.593 37.037 0.00 0.00 36.98 3.16
2637 2853 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
2638 2854 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
2639 2855 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
2640 2856 8.569641 ACATCCGTATCTAGACAAATCTAAGAC 58.430 37.037 0.00 0.00 36.98 3.01
2641 2857 8.693120 ACATCCGTATCTAGACAAATCTAAGA 57.307 34.615 0.00 0.00 36.98 2.10
2658 2874 9.570468 ACTAAAATGAGTCTAGATACATCCGTA 57.430 33.333 12.66 6.93 0.00 4.02
2659 2875 8.353684 CACTAAAATGAGTCTAGATACATCCGT 58.646 37.037 12.66 7.10 0.00 4.69
2660 2876 7.327275 GCACTAAAATGAGTCTAGATACATCCG 59.673 40.741 12.66 6.68 0.00 4.18
2661 2877 8.364142 AGCACTAAAATGAGTCTAGATACATCC 58.636 37.037 12.66 0.00 0.00 3.51
2664 2880 9.628500 TCTAGCACTAAAATGAGTCTAGATACA 57.372 33.333 0.00 0.00 34.65 2.29
2668 2884 9.628500 TGTATCTAGCACTAAAATGAGTCTAGA 57.372 33.333 11.59 11.59 38.76 2.43
2671 2887 8.364142 GGATGTATCTAGCACTAAAATGAGTCT 58.636 37.037 0.00 0.00 0.00 3.24
2672 2888 7.327275 CGGATGTATCTAGCACTAAAATGAGTC 59.673 40.741 0.00 0.00 0.00 3.36
2673 2889 7.148641 CGGATGTATCTAGCACTAAAATGAGT 58.851 38.462 0.00 0.00 0.00 3.41
2674 2890 7.148641 ACGGATGTATCTAGCACTAAAATGAG 58.851 38.462 0.00 0.00 0.00 2.90
2675 2891 7.050970 ACGGATGTATCTAGCACTAAAATGA 57.949 36.000 0.00 0.00 0.00 2.57
2676 2892 8.988064 ATACGGATGTATCTAGCACTAAAATG 57.012 34.615 0.00 0.00 36.56 2.32
2691 2907 9.570468 ACTAAAATGAGTCTAGATACGGATGTA 57.430 33.333 0.00 0.00 34.45 2.29
2692 2908 8.353684 CACTAAAATGAGTCTAGATACGGATGT 58.646 37.037 0.00 0.00 0.00 3.06
2693 2909 7.327275 GCACTAAAATGAGTCTAGATACGGATG 59.673 40.741 0.00 0.00 0.00 3.51
2694 2910 7.371936 GCACTAAAATGAGTCTAGATACGGAT 58.628 38.462 0.00 0.00 0.00 4.18
2695 2911 6.512903 CGCACTAAAATGAGTCTAGATACGGA 60.513 42.308 0.00 0.00 0.00 4.69
2696 2912 5.625721 CGCACTAAAATGAGTCTAGATACGG 59.374 44.000 0.00 0.00 0.00 4.02
2697 2913 6.427974 TCGCACTAAAATGAGTCTAGATACG 58.572 40.000 0.00 0.00 0.00 3.06
2698 2914 7.640852 TCTCGCACTAAAATGAGTCTAGATAC 58.359 38.462 0.00 0.00 0.00 2.24
2699 2915 7.803279 TCTCGCACTAAAATGAGTCTAGATA 57.197 36.000 0.00 0.00 0.00 1.98
2700 2916 6.701145 TCTCGCACTAAAATGAGTCTAGAT 57.299 37.500 0.00 0.00 0.00 1.98
2701 2917 6.701145 ATCTCGCACTAAAATGAGTCTAGA 57.299 37.500 0.00 0.00 0.00 2.43
2702 2918 7.418408 TGTATCTCGCACTAAAATGAGTCTAG 58.582 38.462 0.00 0.00 0.00 2.43
2703 2919 7.329588 TGTATCTCGCACTAAAATGAGTCTA 57.670 36.000 0.00 0.00 0.00 2.59
2704 2920 6.208988 TGTATCTCGCACTAAAATGAGTCT 57.791 37.500 0.00 0.00 0.00 3.24
2705 2921 6.144724 GGATGTATCTCGCACTAAAATGAGTC 59.855 42.308 0.00 0.00 0.00 3.36
2706 2922 5.986135 GGATGTATCTCGCACTAAAATGAGT 59.014 40.000 0.00 0.00 0.00 3.41
2707 2923 5.117745 CGGATGTATCTCGCACTAAAATGAG 59.882 44.000 0.00 0.00 0.00 2.90
2708 2924 4.982295 CGGATGTATCTCGCACTAAAATGA 59.018 41.667 0.00 0.00 0.00 2.57
2709 2925 4.745125 ACGGATGTATCTCGCACTAAAATG 59.255 41.667 0.00 0.00 0.00 2.32
2710 2926 4.945246 ACGGATGTATCTCGCACTAAAAT 58.055 39.130 0.00 0.00 0.00 1.82
2711 2927 4.380841 ACGGATGTATCTCGCACTAAAA 57.619 40.909 0.00 0.00 0.00 1.52
2712 2928 5.700722 ATACGGATGTATCTCGCACTAAA 57.299 39.130 0.00 0.00 36.56 1.85
2723 2939 7.776618 TGGATTTGTCTAGATACGGATGTAT 57.223 36.000 0.00 0.00 43.97 2.29
2724 2940 7.504574 TCTTGGATTTGTCTAGATACGGATGTA 59.495 37.037 0.00 0.00 34.45 2.29
2725 2941 6.323996 TCTTGGATTTGTCTAGATACGGATGT 59.676 38.462 0.00 0.00 0.00 3.06
2726 2942 6.642950 GTCTTGGATTTGTCTAGATACGGATG 59.357 42.308 0.00 0.00 0.00 3.51
2727 2943 6.323996 TGTCTTGGATTTGTCTAGATACGGAT 59.676 38.462 0.00 0.00 0.00 4.18
2728 2944 5.655090 TGTCTTGGATTTGTCTAGATACGGA 59.345 40.000 0.00 0.00 0.00 4.69
2729 2945 5.902681 TGTCTTGGATTTGTCTAGATACGG 58.097 41.667 0.00 0.00 0.00 4.02
2730 2946 7.036220 ACTTGTCTTGGATTTGTCTAGATACG 58.964 38.462 0.00 0.00 0.00 3.06
2731 2947 9.871238 TTACTTGTCTTGGATTTGTCTAGATAC 57.129 33.333 0.00 0.00 0.00 2.24
2733 2949 9.965902 AATTACTTGTCTTGGATTTGTCTAGAT 57.034 29.630 0.00 0.00 0.00 1.98
2734 2950 9.436957 GAATTACTTGTCTTGGATTTGTCTAGA 57.563 33.333 0.00 0.00 0.00 2.43
2735 2951 8.383619 CGAATTACTTGTCTTGGATTTGTCTAG 58.616 37.037 0.00 0.00 0.00 2.43
2736 2952 7.333423 CCGAATTACTTGTCTTGGATTTGTCTA 59.667 37.037 0.00 0.00 0.00 2.59
2737 2953 6.149474 CCGAATTACTTGTCTTGGATTTGTCT 59.851 38.462 0.00 0.00 0.00 3.41
2738 2954 6.148811 TCCGAATTACTTGTCTTGGATTTGTC 59.851 38.462 0.00 0.00 0.00 3.18
2739 2955 6.001460 TCCGAATTACTTGTCTTGGATTTGT 58.999 36.000 0.00 0.00 0.00 2.83
2740 2956 6.494893 TCCGAATTACTTGTCTTGGATTTG 57.505 37.500 0.00 0.00 0.00 2.32
2741 2957 6.348213 CGTTCCGAATTACTTGTCTTGGATTT 60.348 38.462 0.00 0.00 0.00 2.17
2742 2958 5.121768 CGTTCCGAATTACTTGTCTTGGATT 59.878 40.000 0.00 0.00 0.00 3.01
2743 2959 4.630069 CGTTCCGAATTACTTGTCTTGGAT 59.370 41.667 0.00 0.00 0.00 3.41
2744 2960 3.991773 CGTTCCGAATTACTTGTCTTGGA 59.008 43.478 0.00 0.00 0.00 3.53
2745 2961 3.124636 CCGTTCCGAATTACTTGTCTTGG 59.875 47.826 0.00 0.00 0.00 3.61
2746 2962 3.991773 TCCGTTCCGAATTACTTGTCTTG 59.008 43.478 0.00 0.00 0.00 3.02
2747 2963 4.243270 CTCCGTTCCGAATTACTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
2748 2964 3.368116 CCTCCGTTCCGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
2749 2965 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2750 2966 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2751 2967 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2752 2968 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
2753 2969 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
2754 2970 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
2755 2971 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
2756 2972 1.755380 CTACTCCCTCCGTTCCGAATT 59.245 52.381 0.00 0.00 0.00 2.17
2757 2973 1.341778 ACTACTCCCTCCGTTCCGAAT 60.342 52.381 0.00 0.00 0.00 3.34
2758 2974 0.038744 ACTACTCCCTCCGTTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
2759 2975 0.911769 TACTACTCCCTCCGTTCCGA 59.088 55.000 0.00 0.00 0.00 4.55
2760 2976 1.307097 CTACTACTCCCTCCGTTCCG 58.693 60.000 0.00 0.00 0.00 4.30
2761 2977 2.433662 ACTACTACTCCCTCCGTTCC 57.566 55.000 0.00 0.00 0.00 3.62
2762 2978 4.775236 TCTTACTACTACTCCCTCCGTTC 58.225 47.826 0.00 0.00 0.00 3.95
2763 2979 4.851639 TCTTACTACTACTCCCTCCGTT 57.148 45.455 0.00 0.00 0.00 4.44
2764 2980 4.411540 TCATCTTACTACTACTCCCTCCGT 59.588 45.833 0.00 0.00 0.00 4.69
2765 2981 4.970711 TCATCTTACTACTACTCCCTCCG 58.029 47.826 0.00 0.00 0.00 4.63
2766 2982 6.239092 GCTTTCATCTTACTACTACTCCCTCC 60.239 46.154 0.00 0.00 0.00 4.30
2767 2983 6.548251 AGCTTTCATCTTACTACTACTCCCTC 59.452 42.308 0.00 0.00 0.00 4.30
2768 2984 6.436890 AGCTTTCATCTTACTACTACTCCCT 58.563 40.000 0.00 0.00 0.00 4.20
2769 2985 6.718522 AGCTTTCATCTTACTACTACTCCC 57.281 41.667 0.00 0.00 0.00 4.30
2770 2986 8.035984 ACAAAGCTTTCATCTTACTACTACTCC 58.964 37.037 9.23 0.00 0.00 3.85
2771 2987 8.989653 ACAAAGCTTTCATCTTACTACTACTC 57.010 34.615 9.23 0.00 0.00 2.59
2772 2988 7.755822 CGACAAAGCTTTCATCTTACTACTACT 59.244 37.037 9.23 0.00 0.00 2.57
2773 2989 7.754027 TCGACAAAGCTTTCATCTTACTACTAC 59.246 37.037 9.23 0.00 0.00 2.73
2774 2990 7.823665 TCGACAAAGCTTTCATCTTACTACTA 58.176 34.615 9.23 0.00 0.00 1.82
2775 2991 6.688578 TCGACAAAGCTTTCATCTTACTACT 58.311 36.000 9.23 0.00 0.00 2.57
2787 3003 5.034797 GCAGTTTTAGTTCGACAAAGCTTT 58.965 37.500 5.69 5.69 0.00 3.51
2821 3038 2.278657 TGGGAAGACCATGGGACATA 57.721 50.000 18.09 0.00 46.80 2.29
2822 3039 3.119352 TGGGAAGACCATGGGACAT 57.881 52.632 18.09 2.43 46.80 3.06
2823 3040 4.679500 TGGGAAGACCATGGGACA 57.321 55.556 18.09 2.48 46.80 4.02
2835 3053 7.833285 AAGCTTAAGACACTTATTTTGGGAA 57.167 32.000 6.67 0.00 0.00 3.97
2836 3054 8.927675 TTAAGCTTAAGACACTTATTTTGGGA 57.072 30.769 14.96 0.00 0.00 4.37
2855 3073 9.566432 AGCTCTAGCACAAATTTATATTAAGCT 57.434 29.630 4.54 0.00 45.16 3.74
2865 3083 9.892130 ACTTTATACTAGCTCTAGCACAAATTT 57.108 29.630 4.54 0.00 45.16 1.82
2866 3084 9.892130 AACTTTATACTAGCTCTAGCACAAATT 57.108 29.630 4.54 0.00 45.16 1.82
2870 3088 9.404848 TCTTAACTTTATACTAGCTCTAGCACA 57.595 33.333 4.54 0.00 45.16 4.57
2871 3089 9.667989 GTCTTAACTTTATACTAGCTCTAGCAC 57.332 37.037 4.54 0.00 45.16 4.40
2872 3090 9.404848 TGTCTTAACTTTATACTAGCTCTAGCA 57.595 33.333 4.54 0.00 45.16 3.49
2873 3091 9.667989 GTGTCTTAACTTTATACTAGCTCTAGC 57.332 37.037 0.00 0.00 42.49 3.42
2886 3104 8.776470 CGTCCCAAAATAAGTGTCTTAACTTTA 58.224 33.333 0.00 0.00 40.77 1.85
2887 3105 7.255346 CCGTCCCAAAATAAGTGTCTTAACTTT 60.255 37.037 0.00 0.00 40.77 2.66
2888 3106 6.206048 CCGTCCCAAAATAAGTGTCTTAACTT 59.794 38.462 0.00 0.00 42.89 2.66
2889 3107 5.704053 CCGTCCCAAAATAAGTGTCTTAACT 59.296 40.000 0.00 0.00 0.00 2.24
2890 3108 5.702209 TCCGTCCCAAAATAAGTGTCTTAAC 59.298 40.000 0.00 0.00 0.00 2.01
2891 3109 5.867330 TCCGTCCCAAAATAAGTGTCTTAA 58.133 37.500 0.00 0.00 0.00 1.85
2892 3110 5.484715 CTCCGTCCCAAAATAAGTGTCTTA 58.515 41.667 0.00 0.00 0.00 2.10
2893 3111 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
2894 3112 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2895 3113 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
2896 3114 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
2897 3115 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2898 3116 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2899 3117 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2900 3118 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2901 3119 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2902 3120 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2903 3121 1.348696 GTTACTCCCTCCGTCCCAAAA 59.651 52.381 0.00 0.00 0.00 2.44
2904 3122 0.978907 GTTACTCCCTCCGTCCCAAA 59.021 55.000 0.00 0.00 0.00 3.28
2905 3123 0.115745 AGTTACTCCCTCCGTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
2906 3124 0.324091 GAGTTACTCCCTCCGTCCCA 60.324 60.000 0.00 0.00 0.00 4.37
2907 3125 0.324091 TGAGTTACTCCCTCCGTCCC 60.324 60.000 10.10 0.00 0.00 4.46
2908 3126 1.104630 CTGAGTTACTCCCTCCGTCC 58.895 60.000 10.10 0.00 0.00 4.79
2909 3127 2.018515 CTCTGAGTTACTCCCTCCGTC 58.981 57.143 10.10 0.00 0.00 4.79
2910 3128 1.355043 ACTCTGAGTTACTCCCTCCGT 59.645 52.381 10.10 0.00 0.00 4.69
2911 3129 1.746220 CACTCTGAGTTACTCCCTCCG 59.254 57.143 7.77 0.00 0.00 4.63
2912 3130 1.478916 GCACTCTGAGTTACTCCCTCC 59.521 57.143 7.77 0.00 0.00 4.30
2913 3131 2.171840 TGCACTCTGAGTTACTCCCTC 58.828 52.381 7.77 0.00 0.00 4.30
2914 3132 2.310779 TGCACTCTGAGTTACTCCCT 57.689 50.000 7.77 0.00 0.00 4.20
2915 3133 3.402628 TTTGCACTCTGAGTTACTCCC 57.597 47.619 7.77 0.00 0.00 4.30
2916 3134 4.632153 TCTTTTGCACTCTGAGTTACTCC 58.368 43.478 7.77 0.00 0.00 3.85
2917 3135 5.523916 TGTTCTTTTGCACTCTGAGTTACTC 59.476 40.000 7.77 5.27 0.00 2.59
2918 3136 5.428253 TGTTCTTTTGCACTCTGAGTTACT 58.572 37.500 7.77 0.00 0.00 2.24
2919 3137 5.734855 TGTTCTTTTGCACTCTGAGTTAC 57.265 39.130 7.77 4.13 0.00 2.50
2923 3141 6.017605 ACTGTAATGTTCTTTTGCACTCTGAG 60.018 38.462 2.45 2.45 0.00 3.35
2925 3143 6.064846 ACTGTAATGTTCTTTTGCACTCTG 57.935 37.500 0.00 0.00 0.00 3.35
2957 3175 3.681897 CCACTGGATTTCAGACGAAGAAG 59.318 47.826 0.00 0.00 46.18 2.85
2984 3202 5.187772 TGCACCAAGTAGTGATGTCTTCTAT 59.812 40.000 0.00 0.00 40.34 1.98
3018 3237 2.952310 GGCAACTCAGAAGTGGAAGTTT 59.048 45.455 0.00 0.00 35.36 2.66
3025 3245 2.095567 CCAATTCGGCAACTCAGAAGTG 60.096 50.000 0.00 0.00 42.01 3.16
3037 3257 2.355197 CCCCAAAATTTCCAATTCGGC 58.645 47.619 0.00 0.00 33.14 5.54
3062 3282 0.324368 GAAAGAATGTCCCCACCCCC 60.324 60.000 0.00 0.00 0.00 5.40
3063 3283 0.679960 CGAAAGAATGTCCCCACCCC 60.680 60.000 0.00 0.00 0.00 4.95
3064 3284 0.679960 CCGAAAGAATGTCCCCACCC 60.680 60.000 0.00 0.00 0.00 4.61
3065 3285 0.326927 TCCGAAAGAATGTCCCCACC 59.673 55.000 0.00 0.00 0.00 4.61
3066 3286 1.271163 TGTCCGAAAGAATGTCCCCAC 60.271 52.381 0.00 0.00 0.00 4.61
3067 3287 1.003118 CTGTCCGAAAGAATGTCCCCA 59.997 52.381 0.00 0.00 0.00 4.96
3068 3288 1.278127 TCTGTCCGAAAGAATGTCCCC 59.722 52.381 0.00 0.00 0.00 4.81
3069 3289 2.622436 CTCTGTCCGAAAGAATGTCCC 58.378 52.381 0.00 0.00 0.00 4.46
3070 3290 2.622436 CCTCTGTCCGAAAGAATGTCC 58.378 52.381 0.00 0.00 0.00 4.02
3071 3291 2.233922 TCCCTCTGTCCGAAAGAATGTC 59.766 50.000 0.00 0.00 0.00 3.06
3072 3292 2.234908 CTCCCTCTGTCCGAAAGAATGT 59.765 50.000 0.00 0.00 0.00 2.71
3073 3293 2.898705 CTCCCTCTGTCCGAAAGAATG 58.101 52.381 0.00 0.00 0.00 2.67
3074 3294 1.208293 GCTCCCTCTGTCCGAAAGAAT 59.792 52.381 0.00 0.00 0.00 2.40
3075 3295 0.608640 GCTCCCTCTGTCCGAAAGAA 59.391 55.000 0.00 0.00 0.00 2.52
3076 3296 0.541998 TGCTCCCTCTGTCCGAAAGA 60.542 55.000 0.00 0.00 0.00 2.52
3077 3297 0.390472 GTGCTCCCTCTGTCCGAAAG 60.390 60.000 0.00 0.00 0.00 2.62
3078 3298 1.118965 TGTGCTCCCTCTGTCCGAAA 61.119 55.000 0.00 0.00 0.00 3.46
3079 3299 1.118965 TTGTGCTCCCTCTGTCCGAA 61.119 55.000 0.00 0.00 0.00 4.30
3080 3300 1.118965 TTTGTGCTCCCTCTGTCCGA 61.119 55.000 0.00 0.00 0.00 4.55
3081 3301 0.951040 GTTTGTGCTCCCTCTGTCCG 60.951 60.000 0.00 0.00 0.00 4.79
3082 3302 0.108585 TGTTTGTGCTCCCTCTGTCC 59.891 55.000 0.00 0.00 0.00 4.02
3083 3303 2.191128 ATGTTTGTGCTCCCTCTGTC 57.809 50.000 0.00 0.00 0.00 3.51
3084 3304 2.107204 AGAATGTTTGTGCTCCCTCTGT 59.893 45.455 0.00 0.00 0.00 3.41
3085 3305 2.486982 CAGAATGTTTGTGCTCCCTCTG 59.513 50.000 0.00 0.00 0.00 3.35
3086 3306 2.553904 CCAGAATGTTTGTGCTCCCTCT 60.554 50.000 0.00 0.00 0.00 3.69
3087 3307 1.815003 CCAGAATGTTTGTGCTCCCTC 59.185 52.381 0.00 0.00 0.00 4.30
3088 3308 1.425066 TCCAGAATGTTTGTGCTCCCT 59.575 47.619 0.00 0.00 0.00 4.20
3089 3309 1.909700 TCCAGAATGTTTGTGCTCCC 58.090 50.000 0.00 0.00 0.00 4.30
3090 3310 2.029918 GGTTCCAGAATGTTTGTGCTCC 60.030 50.000 0.00 0.00 0.00 4.70
3091 3311 2.622942 TGGTTCCAGAATGTTTGTGCTC 59.377 45.455 0.00 0.00 0.00 4.26
3092 3312 2.624838 CTGGTTCCAGAATGTTTGTGCT 59.375 45.455 13.02 0.00 36.24 4.40
3093 3313 2.288395 CCTGGTTCCAGAATGTTTGTGC 60.288 50.000 19.12 0.00 36.24 4.57
3094 3314 2.297033 CCCTGGTTCCAGAATGTTTGTG 59.703 50.000 19.12 0.59 36.24 3.33
3095 3315 2.597455 CCCTGGTTCCAGAATGTTTGT 58.403 47.619 19.12 0.00 36.24 2.83
3096 3316 1.895131 CCCCTGGTTCCAGAATGTTTG 59.105 52.381 19.12 1.90 36.24 2.93
3097 3317 1.203174 CCCCCTGGTTCCAGAATGTTT 60.203 52.381 19.12 0.00 36.24 2.83
3098 3318 0.409484 CCCCCTGGTTCCAGAATGTT 59.591 55.000 19.12 0.00 36.24 2.71
3099 3319 2.087248 CCCCCTGGTTCCAGAATGT 58.913 57.895 19.12 0.00 36.24 2.71
3100 3320 1.380380 GCCCCCTGGTTCCAGAATG 60.380 63.158 19.12 8.33 36.24 2.67
3101 3321 1.856873 TGCCCCCTGGTTCCAGAAT 60.857 57.895 19.12 0.00 36.24 2.40
3102 3322 2.451493 TGCCCCCTGGTTCCAGAA 60.451 61.111 19.12 0.00 36.24 3.02
3103 3323 3.256960 GTGCCCCCTGGTTCCAGA 61.257 66.667 19.12 0.00 36.24 3.86
3104 3324 4.722700 CGTGCCCCCTGGTTCCAG 62.723 72.222 11.52 11.52 0.00 3.86
3107 3327 4.740822 ATGCGTGCCCCCTGGTTC 62.741 66.667 0.00 0.00 0.00 3.62
3118 3338 2.954020 ATACTCGGTCCGCATGCGTG 62.954 60.000 35.55 26.59 37.81 5.34
3119 3339 2.679132 GATACTCGGTCCGCATGCGT 62.679 60.000 35.55 19.53 37.81 5.24
3120 3340 2.016704 GATACTCGGTCCGCATGCG 61.017 63.158 32.60 32.60 39.44 4.73
3121 3341 1.067416 TGATACTCGGTCCGCATGC 59.933 57.895 7.91 7.91 0.00 4.06
3122 3342 0.102300 TGTGATACTCGGTCCGCATG 59.898 55.000 6.34 1.71 0.00 4.06
3123 3343 0.821517 TTGTGATACTCGGTCCGCAT 59.178 50.000 6.34 0.00 0.00 4.73
3124 3344 0.604073 TTTGTGATACTCGGTCCGCA 59.396 50.000 6.34 0.00 0.00 5.69
3125 3345 1.278238 CTTTGTGATACTCGGTCCGC 58.722 55.000 6.34 0.00 0.00 5.54
3126 3346 1.475280 TCCTTTGTGATACTCGGTCCG 59.525 52.381 4.39 4.39 0.00 4.79
3127 3347 2.738964 GCTCCTTTGTGATACTCGGTCC 60.739 54.545 0.00 0.00 0.00 4.46
3128 3348 2.094182 TGCTCCTTTGTGATACTCGGTC 60.094 50.000 0.00 0.00 0.00 4.79
3129 3349 1.899814 TGCTCCTTTGTGATACTCGGT 59.100 47.619 0.00 0.00 0.00 4.69
3130 3350 2.672961 TGCTCCTTTGTGATACTCGG 57.327 50.000 0.00 0.00 0.00 4.63
3131 3351 5.352284 AGTAATGCTCCTTTGTGATACTCG 58.648 41.667 0.00 0.00 0.00 4.18
3132 3352 6.836577 GAGTAATGCTCCTTTGTGATACTC 57.163 41.667 0.00 0.00 38.27 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.