Multiple sequence alignment - TraesCS2B01G302100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G302100 chr2B 100.000 3718 0 0 1 3718 425436224 425439941 0.000000e+00 6866
1 TraesCS2B01G302100 chr2B 94.350 354 19 1 1 353 362248577 362248224 3.270000e-150 542
2 TraesCS2B01G302100 chr2B 92.857 112 7 1 561 671 30633048 30633159 1.070000e-35 161
3 TraesCS2B01G302100 chr2B 93.458 107 7 0 562 668 496329145 496329039 3.840000e-35 159
4 TraesCS2B01G302100 chr2D 88.557 3111 198 74 667 3718 357975703 357978714 0.000000e+00 3627
5 TraesCS2B01G302100 chr2A 89.166 923 47 21 670 1590 478901187 478902058 0.000000e+00 1101
6 TraesCS2B01G302100 chr2A 88.491 643 38 16 2147 2786 478902584 478903193 0.000000e+00 745
7 TraesCS2B01G302100 chr2A 88.190 525 38 19 3033 3538 478907953 478908472 4.110000e-169 604
8 TraesCS2B01G302100 chr2A 95.135 185 9 0 1857 2041 478902238 478902422 3.630000e-75 292
9 TraesCS2B01G302100 chr2A 86.344 227 25 4 347 569 478898245 478898469 3.710000e-60 243
10 TraesCS2B01G302100 chr2A 93.506 154 10 0 1625 1778 478902063 478902216 2.890000e-56 230
11 TraesCS2B01G302100 chr2A 88.235 153 14 3 3566 3718 478908553 478908701 2.950000e-41 180
12 TraesCS2B01G302100 chr6B 95.129 349 15 2 1 347 80154122 80154470 1.950000e-152 549
13 TraesCS2B01G302100 chr7D 88.961 154 16 1 1 154 545314288 545314136 4.900000e-44 189
14 TraesCS2B01G302100 chr3B 93.636 110 7 0 562 671 606581375 606581484 8.260000e-37 165
15 TraesCS2B01G302100 chr3B 93.578 109 7 0 561 669 727744959 727744851 2.970000e-36 163
16 TraesCS2B01G302100 chr1D 92.105 114 9 0 555 668 36625325 36625212 1.070000e-35 161
17 TraesCS2B01G302100 chr7B 90.244 123 9 3 562 681 172369914 172369792 1.380000e-34 158
18 TraesCS2B01G302100 chr1B 90.678 118 10 1 562 679 499219930 499219814 4.970000e-34 156
19 TraesCS2B01G302100 chr1B 90.000 120 11 1 555 673 368556722 368556841 1.790000e-33 154
20 TraesCS2B01G302100 chr1B 88.372 129 12 3 562 687 353264268 353264140 6.430000e-33 152
21 TraesCS2B01G302100 chr5D 80.667 150 22 7 3398 3545 563967344 563967200 3.930000e-20 110
22 TraesCS2B01G302100 chr5B 81.560 141 19 7 3398 3536 706348854 706348719 3.930000e-20 110
23 TraesCS2B01G302100 chr4A 81.538 130 20 4 3409 3536 608560916 608561043 1.830000e-18 104
24 TraesCS2B01G302100 chr4A 93.878 49 3 0 3489 3537 623384977 623385025 1.430000e-09 75


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G302100 chr2B 425436224 425439941 3717 False 6866.0 6866 100.0000 1 3718 1 chr2B.!!$F2 3717
1 TraesCS2B01G302100 chr2D 357975703 357978714 3011 False 3627.0 3627 88.5570 667 3718 1 chr2D.!!$F1 3051
2 TraesCS2B01G302100 chr2A 478898245 478903193 4948 False 522.2 1101 90.5284 347 2786 5 chr2A.!!$F1 2439
3 TraesCS2B01G302100 chr2A 478907953 478908701 748 False 392.0 604 88.2125 3033 3718 2 chr2A.!!$F2 685

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
337 338 0.028374 ACGTTACCGCTGTTGCAAAC 59.972 50.0 0.0 0.0 42.53 2.93 F
2100 4756 0.034896 CCTAGTTTGCGGACCTGTGT 59.965 55.0 0.0 0.0 0.00 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2327 5056 0.032267 TGTGTATTCCGTGTCGTGCA 59.968 50.0 0.0 0.0 0.00 4.57 R
3042 5798 0.107654 AGAAGCCCGTTGTATGCTCC 60.108 55.0 0.0 0.0 33.36 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.191243 CCAACCCCCACTGGAAAC 57.809 61.111 0.00 0.00 34.35 2.78
18 19 1.231641 CCAACCCCCACTGGAAACA 59.768 57.895 0.00 0.00 34.35 2.83
29 30 1.866237 TGGAAACAGATCGCGTTGC 59.134 52.632 5.77 0.00 35.01 4.17
30 31 1.134694 GGAAACAGATCGCGTTGCC 59.865 57.895 5.77 11.15 34.88 4.52
31 32 1.573829 GGAAACAGATCGCGTTGCCA 61.574 55.000 18.48 0.00 41.22 4.92
32 33 0.179215 GAAACAGATCGCGTTGCCAG 60.179 55.000 5.77 0.00 0.00 4.85
33 34 1.577328 AAACAGATCGCGTTGCCAGG 61.577 55.000 5.77 0.00 0.00 4.45
34 35 3.869272 CAGATCGCGTTGCCAGGC 61.869 66.667 3.66 3.66 0.00 4.85
40 41 4.404654 GCGTTGCCAGGCGGAAAG 62.405 66.667 7.03 0.00 26.39 2.62
51 52 3.837669 GCGGAAAGCTTCGAACAAA 57.162 47.368 11.38 0.00 44.04 2.83
52 53 2.331809 GCGGAAAGCTTCGAACAAAT 57.668 45.000 11.38 0.00 44.04 2.32
53 54 2.242564 GCGGAAAGCTTCGAACAAATC 58.757 47.619 11.38 0.00 44.04 2.17
54 55 2.095718 GCGGAAAGCTTCGAACAAATCT 60.096 45.455 11.38 0.00 44.04 2.40
55 56 3.482786 CGGAAAGCTTCGAACAAATCTG 58.517 45.455 0.00 0.00 0.00 2.90
56 57 3.667960 CGGAAAGCTTCGAACAAATCTGG 60.668 47.826 0.00 0.00 0.00 3.86
57 58 2.997485 AAGCTTCGAACAAATCTGGC 57.003 45.000 0.00 0.00 0.00 4.85
58 59 0.798776 AGCTTCGAACAAATCTGGCG 59.201 50.000 0.00 0.00 0.00 5.69
59 60 0.796312 GCTTCGAACAAATCTGGCGA 59.204 50.000 0.00 0.00 33.48 5.54
60 61 1.201965 GCTTCGAACAAATCTGGCGAG 60.202 52.381 0.00 0.00 35.72 5.03
61 62 2.069273 CTTCGAACAAATCTGGCGAGT 58.931 47.619 0.00 0.00 35.72 4.18
62 63 1.428448 TCGAACAAATCTGGCGAGTG 58.572 50.000 0.00 0.00 32.19 3.51
63 64 1.148310 CGAACAAATCTGGCGAGTGT 58.852 50.000 0.00 0.00 0.00 3.55
64 65 1.126846 CGAACAAATCTGGCGAGTGTC 59.873 52.381 0.00 0.00 0.00 3.67
65 66 1.126846 GAACAAATCTGGCGAGTGTCG 59.873 52.381 0.00 0.00 43.89 4.35
66 67 0.317160 ACAAATCTGGCGAGTGTCGA 59.683 50.000 0.00 0.00 43.74 4.20
72 73 4.773117 GGCGAGTGTCGACGACCC 62.773 72.222 24.33 14.05 43.74 4.46
74 75 3.417224 CGAGTGTCGACGACCCGA 61.417 66.667 24.33 3.87 43.74 5.14
75 76 2.479650 GAGTGTCGACGACCCGAG 59.520 66.667 24.33 0.00 39.43 4.63
76 77 3.664223 GAGTGTCGACGACCCGAGC 62.664 68.421 24.33 9.86 39.43 5.03
77 78 4.034258 GTGTCGACGACCCGAGCA 62.034 66.667 24.33 2.39 39.43 4.26
78 79 3.733960 TGTCGACGACCCGAGCAG 61.734 66.667 24.33 0.00 39.43 4.24
79 80 3.429141 GTCGACGACCCGAGCAGA 61.429 66.667 17.25 0.00 39.43 4.26
80 81 2.670592 TCGACGACCCGAGCAGAA 60.671 61.111 0.00 0.00 34.19 3.02
81 82 2.504244 CGACGACCCGAGCAGAAC 60.504 66.667 0.00 0.00 0.00 3.01
82 83 2.126031 GACGACCCGAGCAGAACC 60.126 66.667 0.00 0.00 0.00 3.62
83 84 2.600769 ACGACCCGAGCAGAACCT 60.601 61.111 0.00 0.00 0.00 3.50
84 85 2.182030 CGACCCGAGCAGAACCTC 59.818 66.667 0.00 0.00 0.00 3.85
85 86 2.579738 GACCCGAGCAGAACCTCC 59.420 66.667 0.00 0.00 0.00 4.30
86 87 3.358076 GACCCGAGCAGAACCTCCG 62.358 68.421 0.00 0.00 0.00 4.63
87 88 4.821589 CCCGAGCAGAACCTCCGC 62.822 72.222 0.00 0.00 0.00 5.54
88 89 4.821589 CCGAGCAGAACCTCCGCC 62.822 72.222 0.00 0.00 0.00 6.13
107 108 3.145551 CCGACGTCTCCCCCGATT 61.146 66.667 14.70 0.00 0.00 3.34
108 109 2.718073 CCGACGTCTCCCCCGATTT 61.718 63.158 14.70 0.00 0.00 2.17
109 110 1.386525 CCGACGTCTCCCCCGATTTA 61.387 60.000 14.70 0.00 0.00 1.40
110 111 0.030369 CGACGTCTCCCCCGATTTAG 59.970 60.000 14.70 0.00 0.00 1.85
111 112 0.249363 GACGTCTCCCCCGATTTAGC 60.249 60.000 8.70 0.00 0.00 3.09
112 113 1.299926 CGTCTCCCCCGATTTAGCG 60.300 63.158 0.00 0.00 0.00 4.26
113 114 1.594564 GTCTCCCCCGATTTAGCGC 60.595 63.158 0.00 0.00 0.00 5.92
114 115 2.280865 CTCCCCCGATTTAGCGCC 60.281 66.667 2.29 0.00 0.00 6.53
115 116 3.084646 TCCCCCGATTTAGCGCCA 61.085 61.111 2.29 0.00 0.00 5.69
116 117 2.591715 CCCCCGATTTAGCGCCAG 60.592 66.667 2.29 0.00 0.00 4.85
117 118 3.279875 CCCCGATTTAGCGCCAGC 61.280 66.667 2.29 0.00 45.58 4.85
142 143 2.044946 GCGGGTGCCAATCTCCTT 60.045 61.111 0.00 0.00 33.98 3.36
143 144 2.409870 GCGGGTGCCAATCTCCTTG 61.410 63.158 0.00 0.00 33.98 3.61
144 145 1.299648 CGGGTGCCAATCTCCTTGA 59.700 57.895 0.00 0.00 36.97 3.02
145 146 1.026718 CGGGTGCCAATCTCCTTGAC 61.027 60.000 0.00 0.00 36.97 3.18
146 147 0.329596 GGGTGCCAATCTCCTTGACT 59.670 55.000 0.00 0.00 36.97 3.41
147 148 1.680249 GGGTGCCAATCTCCTTGACTC 60.680 57.143 0.00 0.00 36.97 3.36
148 149 1.363744 GTGCCAATCTCCTTGACTCG 58.636 55.000 0.00 0.00 36.97 4.18
149 150 0.391661 TGCCAATCTCCTTGACTCGC 60.392 55.000 0.00 0.00 36.97 5.03
150 151 1.092345 GCCAATCTCCTTGACTCGCC 61.092 60.000 0.00 0.00 36.97 5.54
151 152 0.807667 CCAATCTCCTTGACTCGCCG 60.808 60.000 0.00 0.00 36.97 6.46
152 153 0.807667 CAATCTCCTTGACTCGCCGG 60.808 60.000 0.00 0.00 36.97 6.13
153 154 2.579684 AATCTCCTTGACTCGCCGGC 62.580 60.000 19.07 19.07 0.00 6.13
179 180 2.579201 CGGTGGACGCCTTGATCT 59.421 61.111 0.00 0.00 34.82 2.75
180 181 1.811266 CGGTGGACGCCTTGATCTG 60.811 63.158 0.00 0.00 34.82 2.90
181 182 1.596934 GGTGGACGCCTTGATCTGA 59.403 57.895 0.00 0.00 0.00 3.27
182 183 0.741221 GGTGGACGCCTTGATCTGAC 60.741 60.000 0.00 0.00 0.00 3.51
183 184 0.741221 GTGGACGCCTTGATCTGACC 60.741 60.000 0.00 0.00 0.00 4.02
184 185 1.153349 GGACGCCTTGATCTGACCC 60.153 63.158 0.00 0.00 0.00 4.46
185 186 1.617947 GGACGCCTTGATCTGACCCT 61.618 60.000 0.00 0.00 0.00 4.34
186 187 0.179097 GACGCCTTGATCTGACCCTC 60.179 60.000 0.00 0.00 0.00 4.30
187 188 1.227089 CGCCTTGATCTGACCCTCG 60.227 63.158 0.00 0.00 0.00 4.63
188 189 1.667154 CGCCTTGATCTGACCCTCGA 61.667 60.000 0.00 0.00 0.00 4.04
189 190 0.755686 GCCTTGATCTGACCCTCGAT 59.244 55.000 0.00 0.00 0.00 3.59
190 191 1.139853 GCCTTGATCTGACCCTCGATT 59.860 52.381 0.00 0.00 0.00 3.34
191 192 2.420687 GCCTTGATCTGACCCTCGATTT 60.421 50.000 0.00 0.00 0.00 2.17
192 193 3.462021 CCTTGATCTGACCCTCGATTTC 58.538 50.000 0.00 0.00 0.00 2.17
193 194 3.462021 CTTGATCTGACCCTCGATTTCC 58.538 50.000 0.00 0.00 0.00 3.13
194 195 2.752030 TGATCTGACCCTCGATTTCCT 58.248 47.619 0.00 0.00 0.00 3.36
195 196 2.695666 TGATCTGACCCTCGATTTCCTC 59.304 50.000 0.00 0.00 0.00 3.71
196 197 2.231716 TCTGACCCTCGATTTCCTCA 57.768 50.000 0.00 0.00 0.00 3.86
197 198 2.103373 TCTGACCCTCGATTTCCTCAG 58.897 52.381 0.00 0.00 0.00 3.35
198 199 2.103373 CTGACCCTCGATTTCCTCAGA 58.897 52.381 0.00 0.00 0.00 3.27
199 200 1.825474 TGACCCTCGATTTCCTCAGAC 59.175 52.381 0.00 0.00 0.00 3.51
200 201 2.104170 GACCCTCGATTTCCTCAGACT 58.896 52.381 0.00 0.00 0.00 3.24
201 202 2.100087 GACCCTCGATTTCCTCAGACTC 59.900 54.545 0.00 0.00 0.00 3.36
202 203 2.103373 CCCTCGATTTCCTCAGACTCA 58.897 52.381 0.00 0.00 0.00 3.41
203 204 2.159170 CCCTCGATTTCCTCAGACTCAC 60.159 54.545 0.00 0.00 0.00 3.51
204 205 2.478709 CCTCGATTTCCTCAGACTCACG 60.479 54.545 0.00 0.00 0.00 4.35
205 206 2.420372 CTCGATTTCCTCAGACTCACGA 59.580 50.000 0.00 0.00 0.00 4.35
206 207 2.420372 TCGATTTCCTCAGACTCACGAG 59.580 50.000 0.00 0.00 0.00 4.18
207 208 2.535331 GATTTCCTCAGACTCACGAGC 58.465 52.381 0.00 0.00 0.00 5.03
208 209 1.328279 TTTCCTCAGACTCACGAGCA 58.672 50.000 0.00 0.00 0.00 4.26
209 210 0.884514 TTCCTCAGACTCACGAGCAG 59.115 55.000 0.00 0.00 0.00 4.24
210 211 0.036875 TCCTCAGACTCACGAGCAGA 59.963 55.000 0.00 0.00 0.00 4.26
211 212 0.170116 CCTCAGACTCACGAGCAGAC 59.830 60.000 0.00 0.00 0.00 3.51
212 213 0.877743 CTCAGACTCACGAGCAGACA 59.122 55.000 0.00 0.00 0.00 3.41
213 214 0.593618 TCAGACTCACGAGCAGACAC 59.406 55.000 0.00 0.00 0.00 3.67
214 215 0.387878 CAGACTCACGAGCAGACACC 60.388 60.000 0.00 0.00 0.00 4.16
215 216 0.823769 AGACTCACGAGCAGACACCA 60.824 55.000 0.00 0.00 0.00 4.17
216 217 0.244994 GACTCACGAGCAGACACCAT 59.755 55.000 0.00 0.00 0.00 3.55
217 218 0.681733 ACTCACGAGCAGACACCATT 59.318 50.000 0.00 0.00 0.00 3.16
218 219 1.073964 CTCACGAGCAGACACCATTG 58.926 55.000 0.00 0.00 0.00 2.82
219 220 0.320683 TCACGAGCAGACACCATTGG 60.321 55.000 0.00 0.00 0.00 3.16
220 221 0.603707 CACGAGCAGACACCATTGGT 60.604 55.000 1.37 1.37 35.62 3.67
234 235 1.871676 CATTGGTGGATCAGAGCATCG 59.128 52.381 0.00 0.00 42.67 3.84
235 236 0.904649 TTGGTGGATCAGAGCATCGT 59.095 50.000 0.00 0.00 42.67 3.73
236 237 0.461548 TGGTGGATCAGAGCATCGTC 59.538 55.000 0.00 0.00 42.67 4.20
237 238 0.596083 GGTGGATCAGAGCATCGTCG 60.596 60.000 0.00 0.00 42.67 5.12
238 239 1.066422 TGGATCAGAGCATCGTCGC 59.934 57.895 0.00 0.00 42.67 5.19
239 240 1.663074 GGATCAGAGCATCGTCGCC 60.663 63.158 0.00 0.00 42.67 5.54
240 241 1.361993 GATCAGAGCATCGTCGCCT 59.638 57.895 0.00 0.00 42.67 5.52
241 242 0.938637 GATCAGAGCATCGTCGCCTG 60.939 60.000 0.00 9.34 42.67 4.85
242 243 1.387295 ATCAGAGCATCGTCGCCTGA 61.387 55.000 15.90 15.90 42.67 3.86
243 244 1.153765 CAGAGCATCGTCGCCTGAA 60.154 57.895 9.76 0.00 42.67 3.02
244 245 1.140589 AGAGCATCGTCGCCTGAAG 59.859 57.895 0.00 0.00 42.67 3.02
245 246 1.139734 GAGCATCGTCGCCTGAAGA 59.860 57.895 0.00 0.00 37.03 2.87
246 247 0.458543 GAGCATCGTCGCCTGAAGAA 60.459 55.000 0.00 0.00 36.20 2.52
247 248 0.737715 AGCATCGTCGCCTGAAGAAC 60.738 55.000 0.00 0.00 36.20 3.01
248 249 1.014044 GCATCGTCGCCTGAAGAACA 61.014 55.000 0.00 0.00 36.20 3.18
249 250 1.428448 CATCGTCGCCTGAAGAACAA 58.572 50.000 0.00 0.00 36.20 2.83
250 251 1.126846 CATCGTCGCCTGAAGAACAAC 59.873 52.381 0.00 0.00 36.20 3.32
251 252 0.103390 TCGTCGCCTGAAGAACAACA 59.897 50.000 0.00 0.00 29.30 3.33
252 253 0.934496 CGTCGCCTGAAGAACAACAA 59.066 50.000 0.00 0.00 0.00 2.83
253 254 1.332904 CGTCGCCTGAAGAACAACAAC 60.333 52.381 0.00 0.00 0.00 3.32
254 255 1.002792 GTCGCCTGAAGAACAACAACC 60.003 52.381 0.00 0.00 0.00 3.77
255 256 1.021202 CGCCTGAAGAACAACAACCA 58.979 50.000 0.00 0.00 0.00 3.67
256 257 1.403679 CGCCTGAAGAACAACAACCAA 59.596 47.619 0.00 0.00 0.00 3.67
257 258 2.159310 CGCCTGAAGAACAACAACCAAA 60.159 45.455 0.00 0.00 0.00 3.28
258 259 3.186909 GCCTGAAGAACAACAACCAAAC 58.813 45.455 0.00 0.00 0.00 2.93
259 260 3.367910 GCCTGAAGAACAACAACCAAACA 60.368 43.478 0.00 0.00 0.00 2.83
260 261 4.815269 CCTGAAGAACAACAACCAAACAA 58.185 39.130 0.00 0.00 0.00 2.83
261 262 4.864247 CCTGAAGAACAACAACCAAACAAG 59.136 41.667 0.00 0.00 0.00 3.16
262 263 5.336372 CCTGAAGAACAACAACCAAACAAGA 60.336 40.000 0.00 0.00 0.00 3.02
263 264 6.279513 TGAAGAACAACAACCAAACAAGAT 57.720 33.333 0.00 0.00 0.00 2.40
264 265 6.098679 TGAAGAACAACAACCAAACAAGATG 58.901 36.000 0.00 0.00 0.00 2.90
265 266 5.913137 AGAACAACAACCAAACAAGATGA 57.087 34.783 0.00 0.00 0.00 2.92
266 267 5.894807 AGAACAACAACCAAACAAGATGAG 58.105 37.500 0.00 0.00 0.00 2.90
267 268 4.045636 ACAACAACCAAACAAGATGAGC 57.954 40.909 0.00 0.00 0.00 4.26
268 269 3.446873 ACAACAACCAAACAAGATGAGCA 59.553 39.130 0.00 0.00 0.00 4.26
269 270 4.081752 ACAACAACCAAACAAGATGAGCAA 60.082 37.500 0.00 0.00 0.00 3.91
270 271 4.734398 ACAACCAAACAAGATGAGCAAA 57.266 36.364 0.00 0.00 0.00 3.68
271 272 5.083533 ACAACCAAACAAGATGAGCAAAA 57.916 34.783 0.00 0.00 0.00 2.44
272 273 4.869861 ACAACCAAACAAGATGAGCAAAAC 59.130 37.500 0.00 0.00 0.00 2.43
273 274 4.058721 ACCAAACAAGATGAGCAAAACC 57.941 40.909 0.00 0.00 0.00 3.27
274 275 3.181466 ACCAAACAAGATGAGCAAAACCC 60.181 43.478 0.00 0.00 0.00 4.11
275 276 3.392882 CAAACAAGATGAGCAAAACCCC 58.607 45.455 0.00 0.00 0.00 4.95
276 277 2.380064 ACAAGATGAGCAAAACCCCA 57.620 45.000 0.00 0.00 0.00 4.96
277 278 2.893424 ACAAGATGAGCAAAACCCCAT 58.107 42.857 0.00 0.00 0.00 4.00
278 279 3.242011 ACAAGATGAGCAAAACCCCATT 58.758 40.909 0.00 0.00 0.00 3.16
279 280 4.415596 ACAAGATGAGCAAAACCCCATTA 58.584 39.130 0.00 0.00 0.00 1.90
280 281 4.220602 ACAAGATGAGCAAAACCCCATTAC 59.779 41.667 0.00 0.00 0.00 1.89
281 282 3.016736 AGATGAGCAAAACCCCATTACG 58.983 45.455 0.00 0.00 0.00 3.18
282 283 2.279935 TGAGCAAAACCCCATTACGT 57.720 45.000 0.00 0.00 0.00 3.57
283 284 2.156098 TGAGCAAAACCCCATTACGTC 58.844 47.619 0.00 0.00 0.00 4.34
284 285 1.471287 GAGCAAAACCCCATTACGTCC 59.529 52.381 0.00 0.00 0.00 4.79
285 286 0.528924 GCAAAACCCCATTACGTCCC 59.471 55.000 0.00 0.00 0.00 4.46
286 287 1.912417 CAAAACCCCATTACGTCCCA 58.088 50.000 0.00 0.00 0.00 4.37
287 288 1.816224 CAAAACCCCATTACGTCCCAG 59.184 52.381 0.00 0.00 0.00 4.45
288 289 1.069775 AAACCCCATTACGTCCCAGT 58.930 50.000 0.00 0.00 0.00 4.00
289 290 0.616891 AACCCCATTACGTCCCAGTC 59.383 55.000 0.00 0.00 0.00 3.51
290 291 1.269703 ACCCCATTACGTCCCAGTCC 61.270 60.000 0.00 0.00 0.00 3.85
291 292 1.525442 CCCATTACGTCCCAGTCCC 59.475 63.158 0.00 0.00 0.00 4.46
292 293 1.268992 CCCATTACGTCCCAGTCCCA 61.269 60.000 0.00 0.00 0.00 4.37
293 294 0.107848 CCATTACGTCCCAGTCCCAC 60.108 60.000 0.00 0.00 0.00 4.61
294 295 0.107848 CATTACGTCCCAGTCCCACC 60.108 60.000 0.00 0.00 0.00 4.61
295 296 1.610554 ATTACGTCCCAGTCCCACCG 61.611 60.000 0.00 0.00 0.00 4.94
296 297 3.512154 TACGTCCCAGTCCCACCGT 62.512 63.158 0.00 0.00 0.00 4.83
297 298 2.135903 TACGTCCCAGTCCCACCGTA 62.136 60.000 0.00 0.00 0.00 4.02
298 299 2.277591 CGTCCCAGTCCCACCGTAA 61.278 63.158 0.00 0.00 0.00 3.18
299 300 1.595357 GTCCCAGTCCCACCGTAAG 59.405 63.158 0.00 0.00 0.00 2.34
300 301 2.267961 CCCAGTCCCACCGTAAGC 59.732 66.667 0.00 0.00 0.00 3.09
301 302 2.291043 CCCAGTCCCACCGTAAGCT 61.291 63.158 0.00 0.00 0.00 3.74
302 303 1.079127 CCAGTCCCACCGTAAGCTG 60.079 63.158 0.00 0.00 0.00 4.24
303 304 1.541310 CCAGTCCCACCGTAAGCTGA 61.541 60.000 0.00 0.00 0.00 4.26
304 305 0.537188 CAGTCCCACCGTAAGCTGAT 59.463 55.000 0.00 0.00 0.00 2.90
305 306 1.066143 CAGTCCCACCGTAAGCTGATT 60.066 52.381 0.00 0.00 0.00 2.57
306 307 1.207329 AGTCCCACCGTAAGCTGATTC 59.793 52.381 0.00 0.00 0.00 2.52
307 308 0.539986 TCCCACCGTAAGCTGATTCC 59.460 55.000 0.00 0.00 0.00 3.01
308 309 0.463833 CCCACCGTAAGCTGATTCCC 60.464 60.000 0.00 0.00 0.00 3.97
309 310 0.541863 CCACCGTAAGCTGATTCCCT 59.458 55.000 0.00 0.00 0.00 4.20
310 311 1.065418 CCACCGTAAGCTGATTCCCTT 60.065 52.381 0.00 0.00 0.00 3.95
311 312 2.169769 CCACCGTAAGCTGATTCCCTTA 59.830 50.000 0.00 0.00 0.00 2.69
312 313 3.195661 CACCGTAAGCTGATTCCCTTAC 58.804 50.000 11.44 11.44 39.81 2.34
313 314 2.169978 ACCGTAAGCTGATTCCCTTACC 59.830 50.000 13.98 3.39 39.97 2.85
314 315 2.169769 CCGTAAGCTGATTCCCTTACCA 59.830 50.000 13.98 0.00 39.97 3.25
315 316 3.181454 CCGTAAGCTGATTCCCTTACCAT 60.181 47.826 13.98 0.00 39.97 3.55
316 317 4.451900 CGTAAGCTGATTCCCTTACCATT 58.548 43.478 13.98 0.00 39.97 3.16
317 318 4.881850 CGTAAGCTGATTCCCTTACCATTT 59.118 41.667 13.98 0.00 39.97 2.32
318 319 6.053005 CGTAAGCTGATTCCCTTACCATTTA 58.947 40.000 13.98 0.00 39.97 1.40
319 320 6.018180 CGTAAGCTGATTCCCTTACCATTTAC 60.018 42.308 13.98 0.00 39.97 2.01
320 321 4.451900 AGCTGATTCCCTTACCATTTACG 58.548 43.478 0.00 0.00 0.00 3.18
321 322 4.080526 AGCTGATTCCCTTACCATTTACGT 60.081 41.667 0.00 0.00 0.00 3.57
322 323 4.638865 GCTGATTCCCTTACCATTTACGTT 59.361 41.667 0.00 0.00 0.00 3.99
323 324 5.818857 GCTGATTCCCTTACCATTTACGTTA 59.181 40.000 0.00 0.00 0.00 3.18
324 325 6.238293 GCTGATTCCCTTACCATTTACGTTAC 60.238 42.308 0.00 0.00 0.00 2.50
325 326 6.114767 TGATTCCCTTACCATTTACGTTACC 58.885 40.000 0.00 0.00 0.00 2.85
326 327 4.122143 TCCCTTACCATTTACGTTACCG 57.878 45.455 0.00 0.00 40.83 4.02
327 328 2.609002 CCCTTACCATTTACGTTACCGC 59.391 50.000 0.00 0.00 37.70 5.68
328 329 3.524541 CCTTACCATTTACGTTACCGCT 58.475 45.455 0.00 0.00 37.70 5.52
329 330 3.307782 CCTTACCATTTACGTTACCGCTG 59.692 47.826 0.00 0.00 37.70 5.18
330 331 2.460757 ACCATTTACGTTACCGCTGT 57.539 45.000 0.00 0.00 37.70 4.40
331 332 2.769893 ACCATTTACGTTACCGCTGTT 58.230 42.857 0.00 0.00 37.70 3.16
332 333 2.481185 ACCATTTACGTTACCGCTGTTG 59.519 45.455 0.00 0.00 37.70 3.33
333 334 2.501881 CATTTACGTTACCGCTGTTGC 58.498 47.619 0.00 0.00 37.70 4.17
334 335 1.579698 TTTACGTTACCGCTGTTGCA 58.420 45.000 0.00 0.00 39.64 4.08
335 336 1.579698 TTACGTTACCGCTGTTGCAA 58.420 45.000 0.00 0.00 39.64 4.08
336 337 1.579698 TACGTTACCGCTGTTGCAAA 58.420 45.000 0.00 0.00 39.64 3.68
337 338 0.028374 ACGTTACCGCTGTTGCAAAC 59.972 50.000 0.00 0.00 42.53 2.93
339 340 4.078342 ACGTTACCGCTGTTGCAAACAA 62.078 45.455 0.00 0.00 46.62 2.83
340 341 5.509927 ACGTTACCGCTGTTGCAAACAAA 62.510 43.478 0.00 0.00 46.62 2.83
362 363 3.262420 CACATCCTTAGTCTTTCACCCG 58.738 50.000 0.00 0.00 0.00 5.28
377 378 1.286305 ACCCGGAAAGCCCATACCAT 61.286 55.000 0.73 0.00 34.14 3.55
378 379 0.106217 CCCGGAAAGCCCATACCATT 60.106 55.000 0.73 0.00 34.14 3.16
388 392 2.367567 GCCCATACCATTCGTAGAGGAA 59.632 50.000 0.00 0.00 38.43 3.36
394 398 6.407074 CCATACCATTCGTAGAGGAAGAGTTT 60.407 42.308 0.00 0.00 38.43 2.66
395 399 5.074584 ACCATTCGTAGAGGAAGAGTTTC 57.925 43.478 0.00 0.00 38.43 2.78
397 401 5.187967 ACCATTCGTAGAGGAAGAGTTTCAT 59.812 40.000 0.00 0.00 38.43 2.57
398 402 5.521735 CCATTCGTAGAGGAAGAGTTTCATG 59.478 44.000 0.00 0.00 38.43 3.07
407 411 0.389948 AGAGTTTCATGACGACGCCC 60.390 55.000 0.00 0.00 0.00 6.13
411 415 0.953471 TTTCATGACGACGCCCCAAG 60.953 55.000 0.00 0.00 0.00 3.61
414 418 1.079127 ATGACGACGCCCCAAGAAG 60.079 57.895 0.00 0.00 0.00 2.85
415 419 1.827399 ATGACGACGCCCCAAGAAGT 61.827 55.000 0.00 0.00 0.00 3.01
417 421 0.037975 GACGACGCCCCAAGAAGTAA 60.038 55.000 0.00 0.00 0.00 2.24
421 425 1.196127 GACGCCCCAAGAAGTAAAACG 59.804 52.381 0.00 0.00 0.00 3.60
422 426 0.519961 CGCCCCAAGAAGTAAAACGG 59.480 55.000 0.00 0.00 0.00 4.44
423 427 0.242825 GCCCCAAGAAGTAAAACGGC 59.757 55.000 0.00 0.00 0.00 5.68
443 447 1.653094 GCCCGGAAATGCAATCGTCA 61.653 55.000 0.73 0.00 0.00 4.35
452 456 2.474266 CAATCGTCAACGGCACCG 59.526 61.111 7.71 7.71 46.03 4.94
497 501 2.318908 TGGCTGAGGCAAAACAAAGAT 58.681 42.857 6.12 0.00 40.87 2.40
532 536 1.108776 TCCAACGGAGGATAAGGACG 58.891 55.000 0.00 0.00 31.23 4.79
536 540 1.109609 ACGGAGGATAAGGACGGAAC 58.890 55.000 0.00 0.00 0.00 3.62
553 557 2.071540 GAACCCGTACCTACACTTTGC 58.928 52.381 0.00 0.00 0.00 3.68
557 561 3.324556 ACCCGTACCTACACTTTGCTAAA 59.675 43.478 0.00 0.00 0.00 1.85
558 562 4.202346 ACCCGTACCTACACTTTGCTAAAA 60.202 41.667 0.00 0.00 0.00 1.52
577 581 3.967332 AAAATACTTCCTCCGTTCGGA 57.033 42.857 13.34 13.34 0.00 4.55
579 583 4.482952 AAATACTTCCTCCGTTCGGAAT 57.517 40.909 14.79 2.14 39.64 3.01
580 584 4.482952 AATACTTCCTCCGTTCGGAATT 57.517 40.909 14.79 7.85 39.64 2.17
582 586 3.242549 ACTTCCTCCGTTCGGAATTAC 57.757 47.619 14.79 0.00 39.64 1.89
583 587 2.830321 ACTTCCTCCGTTCGGAATTACT 59.170 45.455 14.79 0.00 39.64 2.24
584 588 3.260128 ACTTCCTCCGTTCGGAATTACTT 59.740 43.478 14.79 0.00 39.64 2.24
585 589 3.241067 TCCTCCGTTCGGAATTACTTG 57.759 47.619 14.79 1.97 33.41 3.16
586 590 2.564062 TCCTCCGTTCGGAATTACTTGT 59.436 45.455 14.79 0.00 33.41 3.16
587 591 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
588 592 3.581755 CTCCGTTCGGAATTACTTGTCA 58.418 45.455 14.79 0.00 33.41 3.58
589 593 3.319755 TCCGTTCGGAATTACTTGTCAC 58.680 45.455 11.66 0.00 0.00 3.67
591 595 2.981805 CGTTCGGAATTACTTGTCACGA 59.018 45.455 0.00 0.00 0.00 4.35
592 596 3.426191 CGTTCGGAATTACTTGTCACGAA 59.574 43.478 0.00 0.00 36.65 3.85
593 597 4.084952 CGTTCGGAATTACTTGTCACGAAA 60.085 41.667 0.00 0.00 39.99 3.46
596 600 5.922546 TCGGAATTACTTGTCACGAAAATG 58.077 37.500 0.00 0.00 0.00 2.32
597 601 5.086058 CGGAATTACTTGTCACGAAAATGG 58.914 41.667 0.00 0.00 0.00 3.16
598 602 5.106869 CGGAATTACTTGTCACGAAAATGGA 60.107 40.000 0.00 0.00 0.00 3.41
599 603 6.403200 CGGAATTACTTGTCACGAAAATGGAT 60.403 38.462 0.00 0.00 0.00 3.41
602 606 7.915293 ATTACTTGTCACGAAAATGGATGTA 57.085 32.000 0.00 0.00 0.00 2.29
603 607 7.915293 TTACTTGTCACGAAAATGGATGTAT 57.085 32.000 0.00 0.00 0.00 2.29
605 609 6.173339 ACTTGTCACGAAAATGGATGTATCT 58.827 36.000 0.00 0.00 0.00 1.98
607 611 7.492669 ACTTGTCACGAAAATGGATGTATCTAG 59.507 37.037 0.00 0.00 0.00 2.43
608 612 7.107639 TGTCACGAAAATGGATGTATCTAGA 57.892 36.000 0.00 0.00 0.00 2.43
610 614 7.653311 TGTCACGAAAATGGATGTATCTAGATG 59.347 37.037 15.79 0.00 0.00 2.90
611 615 7.653713 GTCACGAAAATGGATGTATCTAGATGT 59.346 37.037 15.79 1.25 0.00 3.06
613 2636 9.645059 CACGAAAATGGATGTATCTAGATGTAT 57.355 33.333 15.79 9.11 0.00 2.29
661 2684 9.685828 TTTTAAGACAAATAATTCCAAACGGAG 57.314 29.630 0.00 0.00 32.88 4.63
662 2685 5.897377 AGACAAATAATTCCAAACGGAGG 57.103 39.130 0.00 0.00 32.88 4.30
663 2686 4.705023 AGACAAATAATTCCAAACGGAGGG 59.295 41.667 0.00 0.00 32.88 4.30
664 2687 4.668636 ACAAATAATTCCAAACGGAGGGA 58.331 39.130 0.00 0.00 32.88 4.20
665 2688 5.269189 ACAAATAATTCCAAACGGAGGGAT 58.731 37.500 0.00 0.00 32.88 3.85
688 3309 9.294030 GGATTACTTTTGCAAGAAACATATCAG 57.706 33.333 0.00 0.00 33.72 2.90
695 3316 5.371526 TGCAAGAAACATATCAGGATCCTC 58.628 41.667 12.69 0.00 0.00 3.71
763 3385 4.648626 TGCTCTGGCCACCTGCAC 62.649 66.667 15.88 0.00 43.89 4.57
799 3427 0.459489 CACAGGTAGCTCTGCTCCTC 59.541 60.000 2.42 0.00 40.44 3.71
808 3436 0.614415 CTCTGCTCCTCCAGGACACT 60.614 60.000 0.00 0.00 39.78 3.55
850 3478 2.046892 ACGTGTCATGCCAGCCTC 60.047 61.111 0.00 0.00 0.00 4.70
859 3487 3.005539 GCCAGCCTCAGACTCCCA 61.006 66.667 0.00 0.00 0.00 4.37
870 3499 0.035630 AGACTCCCACTTCATGCAGC 60.036 55.000 0.00 0.00 0.00 5.25
894 3523 2.515991 CCTCGAGCGCCTCTCTCT 60.516 66.667 6.99 0.00 39.70 3.10
895 3524 2.542907 CCTCGAGCGCCTCTCTCTC 61.543 68.421 6.99 0.00 39.70 3.20
914 3544 0.168348 CGACTCATTCTCACGGTCGT 59.832 55.000 0.00 0.00 42.85 4.34
919 3549 0.038618 CATTCTCACGGTCGTCACCA 60.039 55.000 0.00 0.00 44.02 4.17
920 3550 0.243907 ATTCTCACGGTCGTCACCAG 59.756 55.000 0.00 0.00 44.02 4.00
921 3551 2.416244 TTCTCACGGTCGTCACCAGC 62.416 60.000 0.00 0.00 44.02 4.85
922 3552 2.910479 TCACGGTCGTCACCAGCT 60.910 61.111 0.00 0.00 44.02 4.24
923 3553 1.583495 CTCACGGTCGTCACCAGCTA 61.583 60.000 0.00 0.00 44.02 3.32
924 3554 0.963856 TCACGGTCGTCACCAGCTAT 60.964 55.000 0.00 0.00 44.02 2.97
925 3555 0.525668 CACGGTCGTCACCAGCTATC 60.526 60.000 0.00 0.00 44.02 2.08
927 3557 1.589196 GGTCGTCACCAGCTATCGC 60.589 63.158 0.00 0.00 43.17 4.58
928 3558 1.138883 GTCGTCACCAGCTATCGCA 59.861 57.895 0.00 0.00 39.10 5.10
930 3560 0.459899 TCGTCACCAGCTATCGCATT 59.540 50.000 0.00 0.00 39.10 3.56
931 3561 0.855349 CGTCACCAGCTATCGCATTC 59.145 55.000 0.00 0.00 39.10 2.67
972 3602 1.908483 CCCCGAGGAAGGAAGGAAG 59.092 63.158 0.00 0.00 33.47 3.46
974 3604 0.617820 CCCGAGGAAGGAAGGAAGGA 60.618 60.000 0.00 0.00 0.00 3.36
980 3610 3.330998 GAGGAAGGAAGGAAGGAAAGGAA 59.669 47.826 0.00 0.00 0.00 3.36
982 3612 3.562393 GGAAGGAAGGAAGGAAAGGAAGG 60.562 52.174 0.00 0.00 0.00 3.46
983 3613 3.005529 AGGAAGGAAGGAAAGGAAGGA 57.994 47.619 0.00 0.00 0.00 3.36
984 3614 3.336676 AGGAAGGAAGGAAAGGAAGGAA 58.663 45.455 0.00 0.00 0.00 3.36
985 3615 3.926020 AGGAAGGAAGGAAAGGAAGGAAT 59.074 43.478 0.00 0.00 0.00 3.01
1153 3783 3.276857 CCCTACTACGTCTACAAGCTCA 58.723 50.000 0.00 0.00 0.00 4.26
1250 3880 0.595095 ATCGGCGAGGTACGGATAAC 59.405 55.000 17.22 0.00 42.83 1.89
1284 3914 3.095922 GGGTTGCCCTTATTCGAGG 57.904 57.895 0.00 0.00 41.34 4.63
1305 3935 6.293462 CGAGGAAGTCGTGTTGATCAGATATA 60.293 42.308 0.00 0.00 44.20 0.86
1306 3936 6.976088 AGGAAGTCGTGTTGATCAGATATAG 58.024 40.000 0.00 0.00 0.00 1.31
1348 3978 0.586319 TAACTTGACTTGCTGCGTGC 59.414 50.000 0.00 0.00 43.25 5.34
1537 4167 2.203640 TCCAGGCCACAGTCGAGT 60.204 61.111 5.01 0.00 0.00 4.18
1557 4187 1.202782 TGCTTTGGCCGGTGTAAGTAA 60.203 47.619 1.90 0.00 37.74 2.24
1558 4188 1.198408 GCTTTGGCCGGTGTAAGTAAC 59.802 52.381 1.90 0.00 0.00 2.50
1559 4189 1.461897 CTTTGGCCGGTGTAAGTAACG 59.538 52.381 1.90 0.00 0.00 3.18
1560 4190 0.392336 TTGGCCGGTGTAAGTAACGT 59.608 50.000 1.90 0.00 0.00 3.99
1561 4191 0.319727 TGGCCGGTGTAAGTAACGTG 60.320 55.000 1.90 0.00 0.00 4.49
1580 4210 1.004161 TGCCACCTGCTATTTACTGCA 59.996 47.619 0.00 0.00 42.00 4.41
1593 4223 6.650807 GCTATTTACTGCATACCTTGATAGCA 59.349 38.462 13.76 0.00 39.27 3.49
1598 4228 3.392882 TGCATACCTTGATAGCACATCG 58.607 45.455 0.00 0.00 0.00 3.84
1610 4240 1.201414 AGCACATCGATCGTGTACACA 59.799 47.619 24.98 12.85 36.71 3.72
1614 4244 4.088638 GCACATCGATCGTGTACACATATC 59.911 45.833 24.98 22.48 36.71 1.63
1615 4245 4.318332 CACATCGATCGTGTACACATATCG 59.682 45.833 33.69 33.69 42.90 2.92
1619 4249 6.657836 TCGATCGTGTACACATATCGATAT 57.342 37.500 35.78 12.25 44.06 1.63
1620 4250 6.475207 TCGATCGTGTACACATATCGATATG 58.525 40.000 35.78 33.70 44.06 1.78
1621 4251 5.169738 CGATCGTGTACACATATCGATATGC 59.830 44.000 34.92 22.91 43.58 3.14
1622 4252 5.622770 TCGTGTACACATATCGATATGCT 57.377 39.130 34.75 25.18 42.98 3.79
1641 4271 2.288273 GCTCGAGTCACTGTAACTTGGT 60.288 50.000 15.13 0.00 0.00 3.67
1670 4300 4.201990 GGTTTGATTGCAGTGGATCATCTC 60.202 45.833 0.00 0.00 32.73 2.75
1690 4320 0.889186 GTGAACAATGCCGGTCTGGT 60.889 55.000 1.90 0.00 41.21 4.00
1713 4343 1.666011 GTGTGCTGGTTCGAGGAGA 59.334 57.895 0.00 0.00 0.00 3.71
1721 4351 1.227002 GTTCGAGGAGATGCCCGAC 60.227 63.158 0.00 0.00 38.49 4.79
1752 4382 2.977405 CAAGCAAGTCTTGGTACTGC 57.023 50.000 17.27 0.64 46.50 4.40
1755 4385 1.002544 AGCAAGTCTTGGTACTGCTCC 59.997 52.381 15.54 0.00 40.04 4.70
1789 4435 4.301205 TCTACCCACCTTATTTACCCCTC 58.699 47.826 0.00 0.00 0.00 4.30
1792 4438 2.422945 CCCACCTTATTTACCCCTCTGC 60.423 54.545 0.00 0.00 0.00 4.26
1819 4475 4.256920 GTGCTTCTCTGCTCCTCAATTTA 58.743 43.478 0.00 0.00 0.00 1.40
1821 4477 6.051717 GTGCTTCTCTGCTCCTCAATTTATA 58.948 40.000 0.00 0.00 0.00 0.98
1880 4536 2.106166 ACCATCTCCTTCCATGATGCTC 59.894 50.000 0.00 0.00 37.01 4.26
1885 4541 6.126854 CCATCTCCTTCCATGATGCTCATATA 60.127 42.308 0.00 0.00 34.28 0.86
1894 4550 5.708697 CCATGATGCTCATATATGTTGGTGT 59.291 40.000 12.42 0.00 34.28 4.16
1960 4616 1.216710 CCGCTCTTCCTCACCTGAC 59.783 63.158 0.00 0.00 0.00 3.51
2044 4700 8.079211 AGGATGAGCTTCTACAATGTACTAAA 57.921 34.615 0.00 0.00 0.00 1.85
2059 4715 8.840321 CAATGTACTAAATACAAATCCCTCCAG 58.160 37.037 0.00 0.00 46.90 3.86
2074 4730 1.471684 CTCCAGCATTGCAGTTCCTTC 59.528 52.381 11.91 0.00 0.00 3.46
2081 4737 2.568623 TTGCAGTTCCTTCTCCCTTC 57.431 50.000 0.00 0.00 0.00 3.46
2088 4744 4.287326 CAGTTCCTTCTCCCTTCCTAGTTT 59.713 45.833 0.00 0.00 0.00 2.66
2089 4745 4.287326 AGTTCCTTCTCCCTTCCTAGTTTG 59.713 45.833 0.00 0.00 0.00 2.93
2090 4746 2.572104 TCCTTCTCCCTTCCTAGTTTGC 59.428 50.000 0.00 0.00 0.00 3.68
2091 4747 2.622436 CTTCTCCCTTCCTAGTTTGCG 58.378 52.381 0.00 0.00 0.00 4.85
2092 4748 0.902531 TCTCCCTTCCTAGTTTGCGG 59.097 55.000 0.00 0.00 0.00 5.69
2093 4749 0.902531 CTCCCTTCCTAGTTTGCGGA 59.097 55.000 0.00 0.00 0.00 5.54
2094 4750 0.611714 TCCCTTCCTAGTTTGCGGAC 59.388 55.000 0.00 0.00 0.00 4.79
2095 4751 0.392595 CCCTTCCTAGTTTGCGGACC 60.393 60.000 0.00 0.00 0.00 4.46
2097 4753 1.676014 CCTTCCTAGTTTGCGGACCTG 60.676 57.143 0.00 0.00 0.00 4.00
2098 4754 1.002087 CTTCCTAGTTTGCGGACCTGT 59.998 52.381 0.00 0.00 0.00 4.00
2099 4755 0.320374 TCCTAGTTTGCGGACCTGTG 59.680 55.000 0.00 0.00 0.00 3.66
2100 4756 0.034896 CCTAGTTTGCGGACCTGTGT 59.965 55.000 0.00 0.00 0.00 3.72
2101 4757 1.148310 CTAGTTTGCGGACCTGTGTG 58.852 55.000 0.00 0.00 0.00 3.82
2103 4759 1.095228 AGTTTGCGGACCTGTGTGTG 61.095 55.000 0.00 0.00 0.00 3.82
2104 4760 2.477176 TTTGCGGACCTGTGTGTGC 61.477 57.895 0.00 0.00 0.00 4.57
2121 4844 3.511582 CGCGCGCGTGTTTTAAGC 61.512 61.111 42.49 11.62 34.35 3.09
2128 4851 1.191647 CGCGTGTTTTAAGCTCGACTT 59.808 47.619 7.38 5.74 42.76 3.01
2131 4854 4.323751 GCGTGTTTTAAGCTCGACTTATG 58.676 43.478 7.38 0.00 40.55 1.90
2138 4861 2.933495 AGCTCGACTTATGCGTGTTA 57.067 45.000 0.00 0.00 0.00 2.41
2139 4862 3.438297 AGCTCGACTTATGCGTGTTAT 57.562 42.857 0.00 0.00 0.00 1.89
2142 4865 3.301835 GCTCGACTTATGCGTGTTATGTG 60.302 47.826 0.00 0.00 0.00 3.21
2143 4866 3.183754 TCGACTTATGCGTGTTATGTGG 58.816 45.455 0.00 0.00 0.00 4.17
2184 4913 3.482783 GTGCTGAGCTTCGCCGAC 61.483 66.667 5.83 0.00 0.00 4.79
2324 5053 1.971357 AGACACGAGGGATGTGAGTTT 59.029 47.619 0.00 0.00 39.73 2.66
2325 5054 2.069273 GACACGAGGGATGTGAGTTTG 58.931 52.381 0.00 0.00 39.73 2.93
2327 5056 2.158813 ACACGAGGGATGTGAGTTTGTT 60.159 45.455 0.00 0.00 39.73 2.83
2328 5057 2.224079 CACGAGGGATGTGAGTTTGTTG 59.776 50.000 0.00 0.00 39.73 3.33
2330 5059 2.229792 GAGGGATGTGAGTTTGTTGCA 58.770 47.619 0.00 0.00 0.00 4.08
2332 5061 1.334960 GGGATGTGAGTTTGTTGCACG 60.335 52.381 0.00 0.00 35.37 5.34
2334 5063 2.602217 GGATGTGAGTTTGTTGCACGAC 60.602 50.000 0.00 0.00 35.37 4.34
2337 5066 0.371989 TGAGTTTGTTGCACGACACG 59.628 50.000 0.00 0.00 0.00 4.49
2347 5076 1.141645 GCACGACACGGAATACACAA 58.858 50.000 0.00 0.00 0.00 3.33
2410 5139 4.546829 AACCATGCTCATGCTTGATTTT 57.453 36.364 2.33 0.00 44.17 1.82
2411 5140 3.857052 ACCATGCTCATGCTTGATTTTG 58.143 40.909 2.33 1.65 44.17 2.44
2412 5141 2.607635 CCATGCTCATGCTTGATTTTGC 59.392 45.455 2.33 3.91 44.17 3.68
2413 5142 3.258228 CATGCTCATGCTTGATTTTGCA 58.742 40.909 14.05 14.05 44.17 4.08
2415 5144 3.517602 TGCTCATGCTTGATTTTGCATC 58.482 40.909 9.35 0.00 46.65 3.91
2416 5145 3.194755 TGCTCATGCTTGATTTTGCATCT 59.805 39.130 9.35 0.00 46.65 2.90
2555 5284 2.125912 CTGTTCCTCTGGCGGTCG 60.126 66.667 0.00 0.00 0.00 4.79
2702 5431 3.381983 TCGCTGCACACCTCGGAT 61.382 61.111 0.00 0.00 0.00 4.18
2786 5517 6.665992 AATAAGATAGAATGGCGAGGTGTA 57.334 37.500 0.00 0.00 0.00 2.90
2814 5561 8.879342 TGGATGGTTTGTGTAAATTTAAGTTG 57.121 30.769 0.00 0.00 0.00 3.16
2848 5598 8.947115 ACTAAGTATGATTTTGTTTCTACCTGC 58.053 33.333 0.00 0.00 0.00 4.85
2875 5625 8.606040 AAACTCTCTTCTTTTGAATCTCTCAG 57.394 34.615 0.00 0.00 37.85 3.35
2880 5630 5.471456 TCTTCTTTTGAATCTCTCAGCAACC 59.529 40.000 0.00 0.00 37.85 3.77
2881 5631 4.717877 TCTTTTGAATCTCTCAGCAACCA 58.282 39.130 0.00 0.00 34.81 3.67
2882 5632 4.516698 TCTTTTGAATCTCTCAGCAACCAC 59.483 41.667 0.00 0.00 34.81 4.16
2883 5633 2.479566 TGAATCTCTCAGCAACCACC 57.520 50.000 0.00 0.00 0.00 4.61
2884 5634 1.003580 TGAATCTCTCAGCAACCACCC 59.996 52.381 0.00 0.00 0.00 4.61
2885 5635 1.003580 GAATCTCTCAGCAACCACCCA 59.996 52.381 0.00 0.00 0.00 4.51
2886 5636 1.067295 ATCTCTCAGCAACCACCCAA 58.933 50.000 0.00 0.00 0.00 4.12
2887 5637 0.108585 TCTCTCAGCAACCACCCAAC 59.891 55.000 0.00 0.00 0.00 3.77
2896 5646 2.354203 GCAACCACCCAACAAGAAAACA 60.354 45.455 0.00 0.00 0.00 2.83
2899 5649 1.202359 CCACCCAACAAGAAAACACCG 60.202 52.381 0.00 0.00 0.00 4.94
2929 5679 4.117661 GAAGTCCTCGCGCTCCGT 62.118 66.667 5.56 0.00 38.35 4.69
2930 5680 2.749044 AAGTCCTCGCGCTCCGTA 60.749 61.111 5.56 0.00 38.35 4.02
2993 5749 3.725740 GTGTGCATTCGAAACTGAAACAG 59.274 43.478 0.00 0.00 37.52 3.16
2997 5753 3.303990 GCATTCGAAACTGAAACAGAGCA 60.304 43.478 0.00 0.00 35.18 4.26
3008 5764 2.029518 CAGAGCACCTCGCACACA 59.970 61.111 0.00 0.00 46.13 3.72
3009 5765 2.029666 AGAGCACCTCGCACACAC 59.970 61.111 0.00 0.00 46.13 3.82
3010 5766 2.280119 GAGCACCTCGCACACACA 60.280 61.111 0.00 0.00 46.13 3.72
3013 5769 3.014036 CACCTCGCACACACACAC 58.986 61.111 0.00 0.00 0.00 3.82
3091 5849 3.064408 TCGACGATGCTCACGTTAATAGT 59.936 43.478 0.00 0.00 43.97 2.12
3092 5850 4.270808 TCGACGATGCTCACGTTAATAGTA 59.729 41.667 0.00 0.00 43.97 1.82
3093 5851 4.607646 CGACGATGCTCACGTTAATAGTAG 59.392 45.833 0.00 0.00 43.97 2.57
3094 5852 5.496133 ACGATGCTCACGTTAATAGTAGT 57.504 39.130 0.00 0.00 41.18 2.73
3095 5853 5.888105 ACGATGCTCACGTTAATAGTAGTT 58.112 37.500 0.00 0.00 41.18 2.24
3096 5854 5.970023 ACGATGCTCACGTTAATAGTAGTTC 59.030 40.000 0.00 0.00 41.18 3.01
3097 5855 6.183360 ACGATGCTCACGTTAATAGTAGTTCT 60.183 38.462 0.00 0.00 41.18 3.01
3098 5856 6.140895 CGATGCTCACGTTAATAGTAGTTCTG 59.859 42.308 0.00 0.00 0.00 3.02
3123 5881 4.547367 GCGGCCGCCCAGATAACT 62.547 66.667 39.89 0.00 34.56 2.24
3147 5922 3.277742 GACCGCACGAAACGCAGTC 62.278 63.158 0.00 0.00 45.00 3.51
3153 5928 3.334751 CGAAACGCAGTCGCCACA 61.335 61.111 0.00 0.00 45.00 4.17
3315 6095 1.097232 CCGTCGTAGGGATACACACA 58.903 55.000 0.00 0.00 39.74 3.72
3316 6096 1.202222 CCGTCGTAGGGATACACACAC 60.202 57.143 0.00 0.00 39.74 3.82
3317 6097 1.741706 CGTCGTAGGGATACACACACT 59.258 52.381 0.00 0.00 39.74 3.55
3318 6098 2.477357 CGTCGTAGGGATACACACACTG 60.477 54.545 0.00 0.00 39.74 3.66
3319 6099 1.475280 TCGTAGGGATACACACACTGC 59.525 52.381 0.00 0.00 39.74 4.40
3320 6100 1.203758 CGTAGGGATACACACACTGCA 59.796 52.381 0.00 0.00 39.74 4.41
3372 6152 2.619941 GATGCTGATGGGCAGGCTGA 62.620 60.000 20.86 0.00 45.75 4.26
3576 6356 1.683917 GTGCATACGTCTCTCCAGGAT 59.316 52.381 0.00 0.00 0.00 3.24
3577 6357 1.683385 TGCATACGTCTCTCCAGGATG 59.317 52.381 0.00 0.00 0.00 3.51
3578 6358 1.604185 GCATACGTCTCTCCAGGATGC 60.604 57.143 0.00 0.00 31.97 3.91
3608 6438 9.379791 CTTCACCTTTTCTATACGGTAGATTTT 57.620 33.333 1.34 0.00 0.00 1.82
3629 6459 9.170584 GATTTTAGCTAGTTTCTTGTTTGTGTC 57.829 33.333 0.00 0.00 0.00 3.67
3632 6462 4.035675 AGCTAGTTTCTTGTTTGTGTCTGC 59.964 41.667 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.827507 CTGTTTCCAGTGGGGGTTGG 60.828 60.000 9.92 0.00 37.22 3.77
1 2 0.184933 TCTGTTTCCAGTGGGGGTTG 59.815 55.000 9.92 0.00 39.82 3.77
2 3 1.075536 GATCTGTTTCCAGTGGGGGTT 59.924 52.381 9.92 0.00 39.82 4.11
3 4 0.698818 GATCTGTTTCCAGTGGGGGT 59.301 55.000 9.92 0.00 39.82 4.95
4 5 0.392998 CGATCTGTTTCCAGTGGGGG 60.393 60.000 9.92 0.00 39.82 5.40
5 6 1.026718 GCGATCTGTTTCCAGTGGGG 61.027 60.000 9.92 0.00 39.82 4.96
6 7 1.361668 CGCGATCTGTTTCCAGTGGG 61.362 60.000 9.92 0.00 39.82 4.61
7 8 0.670546 ACGCGATCTGTTTCCAGTGG 60.671 55.000 15.93 1.40 39.82 4.00
8 9 1.136252 CAACGCGATCTGTTTCCAGTG 60.136 52.381 15.93 0.00 39.82 3.66
9 10 1.148310 CAACGCGATCTGTTTCCAGT 58.852 50.000 15.93 0.00 39.82 4.00
10 11 0.179215 GCAACGCGATCTGTTTCCAG 60.179 55.000 15.93 0.00 40.25 3.86
11 12 1.573829 GGCAACGCGATCTGTTTCCA 61.574 55.000 15.93 0.00 33.54 3.53
12 13 1.134694 GGCAACGCGATCTGTTTCC 59.865 57.895 15.93 0.00 0.00 3.13
13 14 0.179215 CTGGCAACGCGATCTGTTTC 60.179 55.000 15.93 0.00 42.51 2.78
14 15 1.577328 CCTGGCAACGCGATCTGTTT 61.577 55.000 15.93 0.00 42.51 2.83
15 16 2.034879 CCTGGCAACGCGATCTGTT 61.035 57.895 15.93 0.00 42.51 3.16
16 17 2.434884 CCTGGCAACGCGATCTGT 60.435 61.111 15.93 0.00 42.51 3.41
17 18 3.869272 GCCTGGCAACGCGATCTG 61.869 66.667 15.93 8.28 42.51 2.90
23 24 4.404654 CTTTCCGCCTGGCAACGC 62.405 66.667 20.29 0.28 42.51 4.84
24 25 4.404654 GCTTTCCGCCTGGCAACG 62.405 66.667 20.29 5.21 42.51 4.10
25 26 2.477972 GAAGCTTTCCGCCTGGCAAC 62.478 60.000 20.29 0.50 40.39 4.17
26 27 2.203480 AAGCTTTCCGCCTGGCAA 60.203 55.556 20.29 3.07 40.39 4.52
27 28 2.672996 GAAGCTTTCCGCCTGGCA 60.673 61.111 20.29 0.00 40.39 4.92
28 29 3.804193 CGAAGCTTTCCGCCTGGC 61.804 66.667 9.11 9.11 40.39 4.85
29 30 1.671054 TTCGAAGCTTTCCGCCTGG 60.671 57.895 0.00 0.00 40.39 4.45
30 31 1.227999 TGTTCGAAGCTTTCCGCCTG 61.228 55.000 0.00 0.00 40.39 4.85
31 32 0.534203 TTGTTCGAAGCTTTCCGCCT 60.534 50.000 0.00 0.00 40.39 5.52
32 33 0.309612 TTTGTTCGAAGCTTTCCGCC 59.690 50.000 0.00 0.00 40.39 6.13
33 34 2.095718 AGATTTGTTCGAAGCTTTCCGC 60.096 45.455 0.00 0.00 39.57 5.54
34 35 3.482786 CAGATTTGTTCGAAGCTTTCCG 58.517 45.455 0.00 0.00 0.00 4.30
35 36 3.826466 CCAGATTTGTTCGAAGCTTTCC 58.174 45.455 0.00 0.00 0.00 3.13
36 37 3.237628 GCCAGATTTGTTCGAAGCTTTC 58.762 45.455 0.00 0.00 0.00 2.62
37 38 2.350772 CGCCAGATTTGTTCGAAGCTTT 60.351 45.455 0.00 0.00 0.00 3.51
38 39 1.197721 CGCCAGATTTGTTCGAAGCTT 59.802 47.619 0.00 0.00 0.00 3.74
39 40 0.798776 CGCCAGATTTGTTCGAAGCT 59.201 50.000 0.00 0.00 0.00 3.74
40 41 0.796312 TCGCCAGATTTGTTCGAAGC 59.204 50.000 0.00 0.00 0.00 3.86
41 42 2.069273 ACTCGCCAGATTTGTTCGAAG 58.931 47.619 0.00 0.00 30.66 3.79
42 43 1.798223 CACTCGCCAGATTTGTTCGAA 59.202 47.619 0.00 0.00 30.66 3.71
43 44 1.270094 ACACTCGCCAGATTTGTTCGA 60.270 47.619 0.00 0.00 0.00 3.71
44 45 1.126846 GACACTCGCCAGATTTGTTCG 59.873 52.381 0.00 0.00 0.00 3.95
45 46 1.126846 CGACACTCGCCAGATTTGTTC 59.873 52.381 0.00 0.00 31.14 3.18
46 47 1.148310 CGACACTCGCCAGATTTGTT 58.852 50.000 0.00 0.00 31.14 2.83
47 48 0.317160 TCGACACTCGCCAGATTTGT 59.683 50.000 0.00 0.00 40.21 2.83
48 49 0.716108 GTCGACACTCGCCAGATTTG 59.284 55.000 11.55 0.00 40.21 2.32
49 50 0.732880 CGTCGACACTCGCCAGATTT 60.733 55.000 17.16 0.00 40.21 2.17
50 51 1.154016 CGTCGACACTCGCCAGATT 60.154 57.895 17.16 0.00 40.21 2.40
51 52 2.038837 TCGTCGACACTCGCCAGAT 61.039 57.895 17.16 0.00 40.21 2.90
52 53 2.667199 TCGTCGACACTCGCCAGA 60.667 61.111 17.16 0.00 40.21 3.86
53 54 2.502080 GTCGTCGACACTCGCCAG 60.502 66.667 20.28 0.00 40.21 4.85
54 55 4.034258 GGTCGTCGACACTCGCCA 62.034 66.667 25.64 0.00 40.21 5.69
55 56 4.773117 GGGTCGTCGACACTCGCC 62.773 72.222 25.64 13.86 40.21 5.54
57 58 3.364249 CTCGGGTCGTCGACACTCG 62.364 68.421 24.25 24.91 42.10 4.18
58 59 2.479650 CTCGGGTCGTCGACACTC 59.520 66.667 24.25 11.65 33.17 3.51
59 60 3.735029 GCTCGGGTCGTCGACACT 61.735 66.667 24.25 0.00 33.17 3.55
60 61 3.948086 CTGCTCGGGTCGTCGACAC 62.948 68.421 25.64 21.99 35.18 3.67
61 62 3.733960 CTGCTCGGGTCGTCGACA 61.734 66.667 25.64 5.75 35.18 4.35
62 63 2.974489 TTCTGCTCGGGTCGTCGAC 61.974 63.158 17.16 17.16 35.18 4.20
63 64 2.670592 TTCTGCTCGGGTCGTCGA 60.671 61.111 0.00 0.00 37.60 4.20
64 65 2.504244 GTTCTGCTCGGGTCGTCG 60.504 66.667 0.00 0.00 0.00 5.12
65 66 2.126031 GGTTCTGCTCGGGTCGTC 60.126 66.667 0.00 0.00 0.00 4.20
66 67 2.600769 AGGTTCTGCTCGGGTCGT 60.601 61.111 0.00 0.00 0.00 4.34
67 68 2.182030 GAGGTTCTGCTCGGGTCG 59.818 66.667 0.00 0.00 0.00 4.79
68 69 2.579738 GGAGGTTCTGCTCGGGTC 59.420 66.667 0.00 0.00 0.00 4.46
69 70 3.382832 CGGAGGTTCTGCTCGGGT 61.383 66.667 0.00 0.00 0.00 5.28
70 71 4.821589 GCGGAGGTTCTGCTCGGG 62.822 72.222 2.71 0.00 45.06 5.14
90 91 1.386525 TAAATCGGGGGAGACGTCGG 61.387 60.000 10.46 0.00 0.00 4.79
91 92 0.030369 CTAAATCGGGGGAGACGTCG 59.970 60.000 10.46 0.00 0.00 5.12
92 93 0.249363 GCTAAATCGGGGGAGACGTC 60.249 60.000 7.70 7.70 0.00 4.34
93 94 1.821258 GCTAAATCGGGGGAGACGT 59.179 57.895 0.00 0.00 0.00 4.34
94 95 1.299926 CGCTAAATCGGGGGAGACG 60.300 63.158 0.00 0.00 0.00 4.18
95 96 1.594564 GCGCTAAATCGGGGGAGAC 60.595 63.158 0.00 0.00 0.00 3.36
96 97 2.803817 GGCGCTAAATCGGGGGAGA 61.804 63.158 7.64 0.00 0.00 3.71
97 98 2.280865 GGCGCTAAATCGGGGGAG 60.281 66.667 7.64 0.00 0.00 4.30
98 99 3.084646 TGGCGCTAAATCGGGGGA 61.085 61.111 7.64 0.00 0.00 4.81
99 100 2.591715 CTGGCGCTAAATCGGGGG 60.592 66.667 7.64 0.00 0.00 5.40
100 101 3.279875 GCTGGCGCTAAATCGGGG 61.280 66.667 7.64 0.00 0.00 5.73
101 102 3.640000 CGCTGGCGCTAAATCGGG 61.640 66.667 7.64 0.00 0.00 5.14
125 126 2.044946 AAGGAGATTGGCACCCGC 60.045 61.111 0.00 0.00 37.44 6.13
126 127 1.026718 GTCAAGGAGATTGGCACCCG 61.027 60.000 0.00 0.00 43.33 5.28
127 128 0.329596 AGTCAAGGAGATTGGCACCC 59.670 55.000 0.00 0.00 46.43 4.61
128 129 1.743996 GAGTCAAGGAGATTGGCACC 58.256 55.000 0.00 0.00 46.43 5.01
129 130 1.363744 CGAGTCAAGGAGATTGGCAC 58.636 55.000 0.00 0.00 46.43 5.01
130 131 0.391661 GCGAGTCAAGGAGATTGGCA 60.392 55.000 0.00 0.00 46.43 4.92
131 132 1.092345 GGCGAGTCAAGGAGATTGGC 61.092 60.000 0.00 0.00 44.24 4.52
132 133 0.807667 CGGCGAGTCAAGGAGATTGG 60.808 60.000 0.00 0.00 39.54 3.16
133 134 0.807667 CCGGCGAGTCAAGGAGATTG 60.808 60.000 9.30 0.00 40.52 2.67
134 135 1.517832 CCGGCGAGTCAAGGAGATT 59.482 57.895 9.30 0.00 0.00 2.40
135 136 3.082579 GCCGGCGAGTCAAGGAGAT 62.083 63.158 12.58 0.00 0.00 2.75
136 137 3.760035 GCCGGCGAGTCAAGGAGA 61.760 66.667 12.58 0.00 0.00 3.71
162 163 1.811266 CAGATCAAGGCGTCCACCG 60.811 63.158 0.00 0.00 40.40 4.94
163 164 0.741221 GTCAGATCAAGGCGTCCACC 60.741 60.000 0.00 0.00 0.00 4.61
164 165 0.741221 GGTCAGATCAAGGCGTCCAC 60.741 60.000 0.00 0.00 0.00 4.02
165 166 1.596934 GGTCAGATCAAGGCGTCCA 59.403 57.895 0.00 0.00 0.00 4.02
166 167 1.153349 GGGTCAGATCAAGGCGTCC 60.153 63.158 0.00 0.00 0.00 4.79
167 168 0.179097 GAGGGTCAGATCAAGGCGTC 60.179 60.000 0.00 0.00 0.00 5.19
168 169 1.901085 GAGGGTCAGATCAAGGCGT 59.099 57.895 0.00 0.00 0.00 5.68
169 170 1.227089 CGAGGGTCAGATCAAGGCG 60.227 63.158 0.00 0.00 0.00 5.52
170 171 0.755686 ATCGAGGGTCAGATCAAGGC 59.244 55.000 0.00 0.00 0.00 4.35
171 172 3.462021 GAAATCGAGGGTCAGATCAAGG 58.538 50.000 0.00 0.00 0.00 3.61
172 173 3.133721 AGGAAATCGAGGGTCAGATCAAG 59.866 47.826 0.00 0.00 0.00 3.02
173 174 3.107601 AGGAAATCGAGGGTCAGATCAA 58.892 45.455 0.00 0.00 0.00 2.57
174 175 2.695666 GAGGAAATCGAGGGTCAGATCA 59.304 50.000 0.00 0.00 0.00 2.92
175 176 2.695666 TGAGGAAATCGAGGGTCAGATC 59.304 50.000 0.00 0.00 0.00 2.75
176 177 2.697751 CTGAGGAAATCGAGGGTCAGAT 59.302 50.000 7.06 0.00 34.57 2.90
177 178 2.103373 CTGAGGAAATCGAGGGTCAGA 58.897 52.381 7.06 0.00 34.57 3.27
178 179 2.103373 TCTGAGGAAATCGAGGGTCAG 58.897 52.381 0.00 0.00 34.06 3.51
179 180 1.825474 GTCTGAGGAAATCGAGGGTCA 59.175 52.381 0.00 0.00 0.00 4.02
180 181 2.100087 GAGTCTGAGGAAATCGAGGGTC 59.900 54.545 0.00 0.00 0.00 4.46
181 182 2.104170 GAGTCTGAGGAAATCGAGGGT 58.896 52.381 0.00 0.00 0.00 4.34
182 183 2.103373 TGAGTCTGAGGAAATCGAGGG 58.897 52.381 0.00 0.00 0.00 4.30
183 184 2.478709 CGTGAGTCTGAGGAAATCGAGG 60.479 54.545 0.00 0.00 0.00 4.63
184 185 2.420372 TCGTGAGTCTGAGGAAATCGAG 59.580 50.000 0.00 0.00 0.00 4.04
185 186 2.420372 CTCGTGAGTCTGAGGAAATCGA 59.580 50.000 0.00 0.00 0.00 3.59
186 187 2.791567 CTCGTGAGTCTGAGGAAATCG 58.208 52.381 5.38 0.00 0.00 3.34
187 188 2.094494 TGCTCGTGAGTCTGAGGAAATC 60.094 50.000 12.82 0.19 32.78 2.17
188 189 1.895798 TGCTCGTGAGTCTGAGGAAAT 59.104 47.619 12.82 0.00 32.78 2.17
189 190 1.270826 CTGCTCGTGAGTCTGAGGAAA 59.729 52.381 12.82 0.00 31.93 3.13
190 191 0.884514 CTGCTCGTGAGTCTGAGGAA 59.115 55.000 12.82 0.00 31.93 3.36
191 192 0.036875 TCTGCTCGTGAGTCTGAGGA 59.963 55.000 12.82 9.92 32.78 3.71
192 193 0.170116 GTCTGCTCGTGAGTCTGAGG 59.830 60.000 12.82 0.96 32.78 3.86
193 194 0.877743 TGTCTGCTCGTGAGTCTGAG 59.122 55.000 8.18 8.18 35.30 3.35
194 195 0.593618 GTGTCTGCTCGTGAGTCTGA 59.406 55.000 0.00 0.00 0.00 3.27
195 196 0.387878 GGTGTCTGCTCGTGAGTCTG 60.388 60.000 0.00 0.00 0.00 3.51
196 197 0.823769 TGGTGTCTGCTCGTGAGTCT 60.824 55.000 0.00 0.00 0.00 3.24
197 198 0.244994 ATGGTGTCTGCTCGTGAGTC 59.755 55.000 0.00 0.00 0.00 3.36
198 199 0.681733 AATGGTGTCTGCTCGTGAGT 59.318 50.000 0.00 0.00 0.00 3.41
199 200 1.073964 CAATGGTGTCTGCTCGTGAG 58.926 55.000 0.00 0.00 0.00 3.51
200 201 0.320683 CCAATGGTGTCTGCTCGTGA 60.321 55.000 0.00 0.00 0.00 4.35
201 202 0.603707 ACCAATGGTGTCTGCTCGTG 60.604 55.000 3.09 0.00 32.98 4.35
202 203 1.754745 ACCAATGGTGTCTGCTCGT 59.245 52.632 3.09 0.00 32.98 4.18
203 204 4.701663 ACCAATGGTGTCTGCTCG 57.298 55.556 3.09 0.00 32.98 5.03
214 215 1.871676 CGATGCTCTGATCCACCAATG 59.128 52.381 0.00 0.00 0.00 2.82
215 216 1.487976 ACGATGCTCTGATCCACCAAT 59.512 47.619 0.00 0.00 0.00 3.16
216 217 0.904649 ACGATGCTCTGATCCACCAA 59.095 50.000 0.00 0.00 0.00 3.67
217 218 0.461548 GACGATGCTCTGATCCACCA 59.538 55.000 0.00 0.00 0.00 4.17
218 219 0.596083 CGACGATGCTCTGATCCACC 60.596 60.000 0.00 0.00 0.00 4.61
219 220 1.211818 GCGACGATGCTCTGATCCAC 61.212 60.000 0.00 0.00 0.00 4.02
220 221 1.066422 GCGACGATGCTCTGATCCA 59.934 57.895 0.00 0.00 0.00 3.41
221 222 1.663074 GGCGACGATGCTCTGATCC 60.663 63.158 0.00 0.00 34.52 3.36
222 223 0.938637 CAGGCGACGATGCTCTGATC 60.939 60.000 0.00 0.00 36.11 2.92
223 224 1.067084 CAGGCGACGATGCTCTGAT 59.933 57.895 0.00 0.00 36.11 2.90
224 225 1.595093 TTCAGGCGACGATGCTCTGA 61.595 55.000 0.00 15.02 39.08 3.27
225 226 1.144565 CTTCAGGCGACGATGCTCTG 61.145 60.000 0.00 2.81 35.67 3.35
226 227 1.140589 CTTCAGGCGACGATGCTCT 59.859 57.895 0.00 0.00 34.52 4.09
227 228 0.458543 TTCTTCAGGCGACGATGCTC 60.459 55.000 0.00 0.00 34.52 4.26
228 229 0.737715 GTTCTTCAGGCGACGATGCT 60.738 55.000 0.00 0.00 34.52 3.79
229 230 1.014044 TGTTCTTCAGGCGACGATGC 61.014 55.000 0.00 0.00 0.00 3.91
230 231 1.126846 GTTGTTCTTCAGGCGACGATG 59.873 52.381 0.00 0.00 0.00 3.84
231 232 1.270094 TGTTGTTCTTCAGGCGACGAT 60.270 47.619 0.00 0.00 0.00 3.73
232 233 0.103390 TGTTGTTCTTCAGGCGACGA 59.897 50.000 0.00 0.00 0.00 4.20
233 234 0.934496 TTGTTGTTCTTCAGGCGACG 59.066 50.000 0.00 0.00 0.00 5.12
234 235 1.002792 GGTTGTTGTTCTTCAGGCGAC 60.003 52.381 0.00 0.00 0.00 5.19
235 236 1.305201 GGTTGTTGTTCTTCAGGCGA 58.695 50.000 0.00 0.00 0.00 5.54
236 237 1.021202 TGGTTGTTGTTCTTCAGGCG 58.979 50.000 0.00 0.00 0.00 5.52
237 238 3.186909 GTTTGGTTGTTGTTCTTCAGGC 58.813 45.455 0.00 0.00 0.00 4.85
238 239 4.448537 TGTTTGGTTGTTGTTCTTCAGG 57.551 40.909 0.00 0.00 0.00 3.86
239 240 5.708948 TCTTGTTTGGTTGTTGTTCTTCAG 58.291 37.500 0.00 0.00 0.00 3.02
240 241 5.713792 TCTTGTTTGGTTGTTGTTCTTCA 57.286 34.783 0.00 0.00 0.00 3.02
241 242 6.329496 TCATCTTGTTTGGTTGTTGTTCTTC 58.671 36.000 0.00 0.00 0.00 2.87
242 243 6.279513 TCATCTTGTTTGGTTGTTGTTCTT 57.720 33.333 0.00 0.00 0.00 2.52
243 244 5.679638 GCTCATCTTGTTTGGTTGTTGTTCT 60.680 40.000 0.00 0.00 0.00 3.01
244 245 4.504097 GCTCATCTTGTTTGGTTGTTGTTC 59.496 41.667 0.00 0.00 0.00 3.18
245 246 4.081752 TGCTCATCTTGTTTGGTTGTTGTT 60.082 37.500 0.00 0.00 0.00 2.83
246 247 3.446873 TGCTCATCTTGTTTGGTTGTTGT 59.553 39.130 0.00 0.00 0.00 3.32
247 248 4.044336 TGCTCATCTTGTTTGGTTGTTG 57.956 40.909 0.00 0.00 0.00 3.33
248 249 4.734398 TTGCTCATCTTGTTTGGTTGTT 57.266 36.364 0.00 0.00 0.00 2.83
249 250 4.734398 TTTGCTCATCTTGTTTGGTTGT 57.266 36.364 0.00 0.00 0.00 3.32
250 251 4.270808 GGTTTTGCTCATCTTGTTTGGTTG 59.729 41.667 0.00 0.00 0.00 3.77
251 252 4.441792 GGTTTTGCTCATCTTGTTTGGTT 58.558 39.130 0.00 0.00 0.00 3.67
252 253 3.181466 GGGTTTTGCTCATCTTGTTTGGT 60.181 43.478 0.00 0.00 0.00 3.67
253 254 3.392882 GGGTTTTGCTCATCTTGTTTGG 58.607 45.455 0.00 0.00 0.00 3.28
254 255 3.181467 TGGGGTTTTGCTCATCTTGTTTG 60.181 43.478 0.00 0.00 0.00 2.93
255 256 3.037549 TGGGGTTTTGCTCATCTTGTTT 58.962 40.909 0.00 0.00 0.00 2.83
256 257 2.676748 TGGGGTTTTGCTCATCTTGTT 58.323 42.857 0.00 0.00 0.00 2.83
257 258 2.380064 TGGGGTTTTGCTCATCTTGT 57.620 45.000 0.00 0.00 0.00 3.16
258 259 3.967332 AATGGGGTTTTGCTCATCTTG 57.033 42.857 0.00 0.00 0.00 3.02
259 260 3.443681 CGTAATGGGGTTTTGCTCATCTT 59.556 43.478 0.00 0.00 0.00 2.40
260 261 3.016736 CGTAATGGGGTTTTGCTCATCT 58.983 45.455 0.00 0.00 0.00 2.90
261 262 2.752903 ACGTAATGGGGTTTTGCTCATC 59.247 45.455 0.00 0.00 0.00 2.92
262 263 2.752903 GACGTAATGGGGTTTTGCTCAT 59.247 45.455 0.00 0.00 0.00 2.90
263 264 2.156098 GACGTAATGGGGTTTTGCTCA 58.844 47.619 0.00 0.00 0.00 4.26
264 265 1.471287 GGACGTAATGGGGTTTTGCTC 59.529 52.381 0.00 0.00 0.00 4.26
265 266 1.541379 GGACGTAATGGGGTTTTGCT 58.459 50.000 0.00 0.00 0.00 3.91
266 267 0.528924 GGGACGTAATGGGGTTTTGC 59.471 55.000 0.00 0.00 0.00 3.68
267 268 1.816224 CTGGGACGTAATGGGGTTTTG 59.184 52.381 0.00 0.00 0.00 2.44
268 269 1.426215 ACTGGGACGTAATGGGGTTTT 59.574 47.619 0.00 0.00 0.00 2.43
269 270 1.003928 GACTGGGACGTAATGGGGTTT 59.996 52.381 0.00 0.00 0.00 3.27
270 271 0.616891 GACTGGGACGTAATGGGGTT 59.383 55.000 0.00 0.00 0.00 4.11
271 272 1.269703 GGACTGGGACGTAATGGGGT 61.270 60.000 0.00 0.00 0.00 4.95
272 273 1.525442 GGACTGGGACGTAATGGGG 59.475 63.158 0.00 0.00 0.00 4.96
273 274 1.268992 TGGGACTGGGACGTAATGGG 61.269 60.000 0.00 0.00 0.00 4.00
274 275 0.107848 GTGGGACTGGGACGTAATGG 60.108 60.000 0.00 0.00 0.00 3.16
275 276 0.107848 GGTGGGACTGGGACGTAATG 60.108 60.000 0.00 0.00 0.00 1.90
276 277 1.610554 CGGTGGGACTGGGACGTAAT 61.611 60.000 0.00 0.00 0.00 1.89
277 278 2.277591 CGGTGGGACTGGGACGTAA 61.278 63.158 0.00 0.00 0.00 3.18
278 279 2.135903 TACGGTGGGACTGGGACGTA 62.136 60.000 0.00 0.00 35.97 3.57
279 280 3.512154 TACGGTGGGACTGGGACGT 62.512 63.158 0.00 0.00 38.23 4.34
280 281 2.221906 CTTACGGTGGGACTGGGACG 62.222 65.000 0.00 0.00 0.00 4.79
281 282 1.595357 CTTACGGTGGGACTGGGAC 59.405 63.158 0.00 0.00 0.00 4.46
282 283 2.288025 GCTTACGGTGGGACTGGGA 61.288 63.158 0.00 0.00 0.00 4.37
283 284 2.267961 GCTTACGGTGGGACTGGG 59.732 66.667 0.00 0.00 0.00 4.45
284 285 1.079127 CAGCTTACGGTGGGACTGG 60.079 63.158 0.00 0.00 35.06 4.00
285 286 0.537188 ATCAGCTTACGGTGGGACTG 59.463 55.000 0.00 0.00 39.09 3.51
286 287 1.207329 GAATCAGCTTACGGTGGGACT 59.793 52.381 0.00 0.00 39.09 3.85
287 288 1.653151 GAATCAGCTTACGGTGGGAC 58.347 55.000 0.00 0.00 39.09 4.46
288 289 0.539986 GGAATCAGCTTACGGTGGGA 59.460 55.000 0.00 0.00 39.09 4.37
289 290 0.463833 GGGAATCAGCTTACGGTGGG 60.464 60.000 0.00 0.00 39.09 4.61
290 291 0.541863 AGGGAATCAGCTTACGGTGG 59.458 55.000 0.00 0.00 39.09 4.61
291 292 2.403252 AAGGGAATCAGCTTACGGTG 57.597 50.000 0.00 0.00 39.94 4.94
292 293 2.169978 GGTAAGGGAATCAGCTTACGGT 59.830 50.000 0.00 0.00 34.25 4.83
293 294 2.169769 TGGTAAGGGAATCAGCTTACGG 59.830 50.000 0.00 0.00 34.25 4.02
294 295 3.536956 TGGTAAGGGAATCAGCTTACG 57.463 47.619 0.00 0.00 34.25 3.18
295 296 6.018180 CGTAAATGGTAAGGGAATCAGCTTAC 60.018 42.308 0.00 0.00 0.00 2.34
296 297 6.053005 CGTAAATGGTAAGGGAATCAGCTTA 58.947 40.000 0.00 0.00 0.00 3.09
297 298 4.881850 CGTAAATGGTAAGGGAATCAGCTT 59.118 41.667 0.00 0.00 0.00 3.74
298 299 4.080526 ACGTAAATGGTAAGGGAATCAGCT 60.081 41.667 0.00 0.00 0.00 4.24
299 300 4.196971 ACGTAAATGGTAAGGGAATCAGC 58.803 43.478 0.00 0.00 0.00 4.26
300 301 6.259387 GGTAACGTAAATGGTAAGGGAATCAG 59.741 42.308 0.00 0.00 0.00 2.90
301 302 6.114767 GGTAACGTAAATGGTAAGGGAATCA 58.885 40.000 0.00 0.00 0.00 2.57
302 303 6.609237 GGTAACGTAAATGGTAAGGGAATC 57.391 41.667 0.00 0.00 0.00 2.52
320 321 2.196295 TTGTTTGCAACAGCGGTAAC 57.804 45.000 0.00 0.00 43.27 2.50
321 322 2.094700 TGTTTGTTTGCAACAGCGGTAA 60.095 40.909 0.00 0.00 43.27 2.85
322 323 1.472878 TGTTTGTTTGCAACAGCGGTA 59.527 42.857 0.00 0.00 43.27 4.02
323 324 0.244994 TGTTTGTTTGCAACAGCGGT 59.755 45.000 0.00 0.00 43.27 5.68
324 325 0.644843 GTGTTTGTTTGCAACAGCGG 59.355 50.000 0.00 0.00 43.27 5.52
325 326 1.344458 TGTGTTTGTTTGCAACAGCG 58.656 45.000 0.00 0.00 43.27 5.18
326 327 2.284952 GGATGTGTTTGTTTGCAACAGC 59.715 45.455 0.00 0.00 43.27 4.40
327 328 3.784338 AGGATGTGTTTGTTTGCAACAG 58.216 40.909 0.00 0.00 43.27 3.16
328 329 3.883830 AGGATGTGTTTGTTTGCAACA 57.116 38.095 0.00 0.00 40.21 3.33
329 330 5.348164 ACTAAGGATGTGTTTGTTTGCAAC 58.652 37.500 0.00 0.00 33.82 4.17
330 331 5.359576 AGACTAAGGATGTGTTTGTTTGCAA 59.640 36.000 0.00 0.00 0.00 4.08
331 332 4.887071 AGACTAAGGATGTGTTTGTTTGCA 59.113 37.500 0.00 0.00 0.00 4.08
332 333 5.438761 AGACTAAGGATGTGTTTGTTTGC 57.561 39.130 0.00 0.00 0.00 3.68
333 334 7.432252 GTGAAAGACTAAGGATGTGTTTGTTTG 59.568 37.037 0.00 0.00 32.31 2.93
334 335 7.416326 GGTGAAAGACTAAGGATGTGTTTGTTT 60.416 37.037 0.00 0.00 32.31 2.83
335 336 6.039382 GGTGAAAGACTAAGGATGTGTTTGTT 59.961 38.462 0.00 0.00 32.31 2.83
336 337 5.531287 GGTGAAAGACTAAGGATGTGTTTGT 59.469 40.000 0.00 0.00 32.31 2.83
337 338 5.048713 GGGTGAAAGACTAAGGATGTGTTTG 60.049 44.000 0.00 0.00 32.31 2.93
338 339 5.070685 GGGTGAAAGACTAAGGATGTGTTT 58.929 41.667 0.00 0.00 34.35 2.83
339 340 4.652822 GGGTGAAAGACTAAGGATGTGTT 58.347 43.478 0.00 0.00 0.00 3.32
340 341 3.306780 CGGGTGAAAGACTAAGGATGTGT 60.307 47.826 0.00 0.00 0.00 3.72
341 342 3.262420 CGGGTGAAAGACTAAGGATGTG 58.738 50.000 0.00 0.00 0.00 3.21
342 343 2.236395 CCGGGTGAAAGACTAAGGATGT 59.764 50.000 0.00 0.00 0.00 3.06
343 344 2.500098 TCCGGGTGAAAGACTAAGGATG 59.500 50.000 0.00 0.00 0.00 3.51
344 345 2.829023 TCCGGGTGAAAGACTAAGGAT 58.171 47.619 0.00 0.00 0.00 3.24
345 346 2.314071 TCCGGGTGAAAGACTAAGGA 57.686 50.000 0.00 0.00 0.00 3.36
362 363 2.052782 ACGAATGGTATGGGCTTTCC 57.947 50.000 0.00 0.00 0.00 3.13
377 378 5.619309 CGTCATGAAACTCTTCCTCTACGAA 60.619 44.000 0.00 0.00 30.39 3.85
378 379 4.142665 CGTCATGAAACTCTTCCTCTACGA 60.143 45.833 0.00 0.00 30.39 3.43
388 392 0.389948 GGGCGTCGTCATGAAACTCT 60.390 55.000 0.00 0.00 0.00 3.24
394 398 1.822114 TTCTTGGGGCGTCGTCATGA 61.822 55.000 0.00 0.00 0.00 3.07
395 399 1.361668 CTTCTTGGGGCGTCGTCATG 61.362 60.000 0.00 0.00 0.00 3.07
397 401 1.180456 TACTTCTTGGGGCGTCGTCA 61.180 55.000 0.00 0.00 0.00 4.35
398 402 0.037975 TTACTTCTTGGGGCGTCGTC 60.038 55.000 0.00 0.00 0.00 4.20
407 411 0.109919 GGCGCCGTTTTACTTCTTGG 60.110 55.000 12.58 0.00 0.00 3.61
411 415 2.477396 CGGGCGCCGTTTTACTTC 59.523 61.111 22.54 1.28 42.73 3.01
414 418 1.925415 ATTTCCGGGCGCCGTTTTAC 61.925 55.000 22.54 3.85 46.80 2.01
415 419 1.674980 ATTTCCGGGCGCCGTTTTA 60.675 52.632 22.54 5.95 46.80 1.52
417 421 3.743636 CATTTCCGGGCGCCGTTT 61.744 61.111 22.54 0.00 46.80 3.60
421 425 3.773262 GATTGCATTTCCGGGCGCC 62.773 63.158 21.18 21.18 0.00 6.53
422 426 2.278792 GATTGCATTTCCGGGCGC 60.279 61.111 0.00 0.00 0.00 6.53
423 427 2.024588 CGATTGCATTTCCGGGCG 59.975 61.111 0.00 0.00 0.00 6.13
429 433 1.259316 GCCGTTGACGATTGCATTTC 58.741 50.000 4.91 0.00 43.02 2.17
432 436 1.501741 GTGCCGTTGACGATTGCAT 59.498 52.632 4.91 0.00 43.02 3.96
443 447 1.816074 AATGTAATGTCGGTGCCGTT 58.184 45.000 10.60 0.63 40.74 4.44
452 456 5.751243 ATGACCCGCTTTAATGTAATGTC 57.249 39.130 0.00 0.00 0.00 3.06
491 495 3.003689 ACTGACAAAACGCCTCATCTTTG 59.996 43.478 0.00 0.00 35.39 2.77
497 501 0.179234 TGGACTGACAAAACGCCTCA 59.821 50.000 0.00 0.00 0.00 3.86
532 536 2.691927 CAAAGTGTAGGTACGGGTTCC 58.308 52.381 0.00 0.00 0.00 3.62
536 540 3.598019 TTAGCAAAGTGTAGGTACGGG 57.402 47.619 0.00 0.00 0.00 5.28
557 561 3.967332 TCCGAACGGAGGAAGTATTTT 57.033 42.857 12.04 0.00 39.76 1.82
558 562 3.967332 TTCCGAACGGAGGAAGTATTT 57.033 42.857 15.34 0.00 46.06 1.40
569 573 2.091588 CGTGACAAGTAATTCCGAACGG 59.908 50.000 6.94 6.94 0.00 4.44
571 575 4.977741 TTCGTGACAAGTAATTCCGAAC 57.022 40.909 0.00 0.00 0.00 3.95
572 576 5.987777 TTTTCGTGACAAGTAATTCCGAA 57.012 34.783 0.00 0.00 0.00 4.30
573 577 5.106869 CCATTTTCGTGACAAGTAATTCCGA 60.107 40.000 0.00 0.00 0.00 4.55
574 578 5.086058 CCATTTTCGTGACAAGTAATTCCG 58.914 41.667 0.00 0.00 0.00 4.30
575 579 6.249035 TCCATTTTCGTGACAAGTAATTCC 57.751 37.500 0.00 0.00 0.00 3.01
576 580 7.305474 ACATCCATTTTCGTGACAAGTAATTC 58.695 34.615 0.00 0.00 0.00 2.17
577 581 7.214467 ACATCCATTTTCGTGACAAGTAATT 57.786 32.000 0.00 0.00 0.00 1.40
579 583 7.822334 AGATACATCCATTTTCGTGACAAGTAA 59.178 33.333 0.00 0.00 0.00 2.24
580 584 7.327975 AGATACATCCATTTTCGTGACAAGTA 58.672 34.615 0.00 0.00 0.00 2.24
582 586 6.668541 AGATACATCCATTTTCGTGACAAG 57.331 37.500 0.00 0.00 0.00 3.16
583 587 7.552459 TCTAGATACATCCATTTTCGTGACAA 58.448 34.615 0.00 0.00 0.00 3.18
584 588 7.107639 TCTAGATACATCCATTTTCGTGACA 57.892 36.000 0.00 0.00 0.00 3.58
585 589 7.653713 ACATCTAGATACATCCATTTTCGTGAC 59.346 37.037 4.54 0.00 0.00 3.67
586 590 7.726216 ACATCTAGATACATCCATTTTCGTGA 58.274 34.615 4.54 0.00 0.00 4.35
587 591 7.953158 ACATCTAGATACATCCATTTTCGTG 57.047 36.000 4.54 0.00 0.00 4.35
637 2660 7.094118 CCCTCCGTTTGGAATTATTTGTCTTAA 60.094 37.037 0.00 0.00 45.87 1.85
638 2661 6.376018 CCCTCCGTTTGGAATTATTTGTCTTA 59.624 38.462 0.00 0.00 45.87 2.10
640 2663 4.705023 CCCTCCGTTTGGAATTATTTGTCT 59.295 41.667 0.00 0.00 45.87 3.41
644 2667 7.123383 AGTAATCCCTCCGTTTGGAATTATTT 58.877 34.615 0.00 0.00 45.87 1.40
645 2668 6.669631 AGTAATCCCTCCGTTTGGAATTATT 58.330 36.000 0.00 0.00 45.87 1.40
646 2669 6.262056 AGTAATCCCTCCGTTTGGAATTAT 57.738 37.500 0.00 0.00 45.87 1.28
648 2671 4.586306 AGTAATCCCTCCGTTTGGAATT 57.414 40.909 0.00 0.00 45.87 2.17
649 2672 4.586306 AAGTAATCCCTCCGTTTGGAAT 57.414 40.909 0.00 0.00 45.87 3.01
650 2673 4.376225 AAAGTAATCCCTCCGTTTGGAA 57.624 40.909 0.00 0.00 45.87 3.53
651 2674 4.076394 CAAAAGTAATCCCTCCGTTTGGA 58.924 43.478 0.00 0.00 43.88 3.53
654 2677 3.492337 TGCAAAAGTAATCCCTCCGTTT 58.508 40.909 0.00 0.00 0.00 3.60
655 2678 3.149005 TGCAAAAGTAATCCCTCCGTT 57.851 42.857 0.00 0.00 0.00 4.44
656 2679 2.871096 TGCAAAAGTAATCCCTCCGT 57.129 45.000 0.00 0.00 0.00 4.69
657 2680 3.343617 TCTTGCAAAAGTAATCCCTCCG 58.656 45.455 0.00 0.00 0.00 4.63
658 2681 5.010617 TGTTTCTTGCAAAAGTAATCCCTCC 59.989 40.000 0.00 0.00 0.00 4.30
659 2682 6.084326 TGTTTCTTGCAAAAGTAATCCCTC 57.916 37.500 0.00 0.00 0.00 4.30
660 2683 6.670695 ATGTTTCTTGCAAAAGTAATCCCT 57.329 33.333 0.00 0.00 0.00 4.20
661 2684 8.250332 TGATATGTTTCTTGCAAAAGTAATCCC 58.750 33.333 0.00 0.00 0.00 3.85
662 2685 9.294030 CTGATATGTTTCTTGCAAAAGTAATCC 57.706 33.333 0.00 0.00 0.00 3.01
663 2686 9.294030 CCTGATATGTTTCTTGCAAAAGTAATC 57.706 33.333 0.00 0.00 0.00 1.75
664 2687 9.023962 TCCTGATATGTTTCTTGCAAAAGTAAT 57.976 29.630 0.00 0.00 0.00 1.89
665 2688 8.402798 TCCTGATATGTTTCTTGCAAAAGTAA 57.597 30.769 0.00 0.00 0.00 2.24
688 3309 4.978083 TGTACGTTAAGTGAGAGGATCC 57.022 45.455 2.48 2.48 33.66 3.36
695 3316 3.322369 TGGTGCATGTACGTTAAGTGAG 58.678 45.455 7.89 0.00 0.00 3.51
763 3385 1.063806 GTGAGCTTCTACACACAGCG 58.936 55.000 0.00 0.00 38.66 5.18
850 3478 1.735386 CTGCATGAAGTGGGAGTCTG 58.265 55.000 0.00 0.00 0.00 3.51
859 3487 1.023513 GGAGCTTCGCTGCATGAAGT 61.024 55.000 22.53 13.52 46.16 3.01
886 3515 3.312421 GTGAGAATGAGTCGAGAGAGAGG 59.688 52.174 0.00 0.00 43.49 3.69
895 3524 2.931536 CGACCGTGAGAATGAGTCG 58.068 57.895 0.00 0.00 43.52 4.18
897 3526 1.068472 GTGACGACCGTGAGAATGAGT 60.068 52.381 0.00 0.00 0.00 3.41
927 3557 1.154413 GACGGCTGTGTTGCGAATG 60.154 57.895 0.80 0.00 0.00 2.67
928 3558 1.163420 TTGACGGCTGTGTTGCGAAT 61.163 50.000 0.80 0.00 0.00 3.34
930 3560 2.202946 TTGACGGCTGTGTTGCGA 60.203 55.556 0.80 0.00 0.00 5.10
931 3561 2.249309 CTTGACGGCTGTGTTGCG 59.751 61.111 0.80 0.00 0.00 4.85
972 3602 2.745482 GCCGACCTATTCCTTCCTTTCC 60.745 54.545 0.00 0.00 0.00 3.13
974 3604 1.134491 CGCCGACCTATTCCTTCCTTT 60.134 52.381 0.00 0.00 0.00 3.11
980 3610 3.912907 CGGCGCCGACCTATTCCT 61.913 66.667 44.86 0.00 42.83 3.36
1113 3743 2.124983 GGCATGAAGAGCGCCAGA 60.125 61.111 2.29 0.00 45.52 3.86
1138 3768 0.169672 GCGGTGAGCTTGTAGACGTA 59.830 55.000 0.00 0.00 44.04 3.57
1183 3813 4.796231 CTTCCCCGCGACGTCCTG 62.796 72.222 8.23 2.03 0.00 3.86
1250 3880 1.323412 ACCCTGATCGAGAATCTCCG 58.677 55.000 4.47 0.46 35.24 4.63
1284 3914 8.561212 ACTACTATATCTGATCAACACGACTTC 58.439 37.037 0.00 0.00 0.00 3.01
1305 3935 4.737578 TCGGAAGCCAGGAATATACTACT 58.262 43.478 0.00 0.00 0.00 2.57
1306 3936 5.662674 ATCGGAAGCCAGGAATATACTAC 57.337 43.478 0.00 0.00 0.00 2.73
1321 3951 4.670221 GCAGCAAGTCAAGTTAATCGGAAG 60.670 45.833 0.00 0.00 0.00 3.46
1537 4167 0.397187 TACTTACACCGGCCAAAGCA 59.603 50.000 0.00 0.00 42.56 3.91
1561 4191 1.750193 TGCAGTAAATAGCAGGTGGC 58.250 50.000 0.00 0.00 45.30 5.01
1580 4210 4.218635 ACGATCGATGTGCTATCAAGGTAT 59.781 41.667 24.34 0.00 0.00 2.73
1593 4223 4.212636 TCGATATGTGTACACGATCGATGT 59.787 41.667 36.88 22.35 45.43 3.06
1598 4228 6.258899 AGCATATCGATATGTGTACACGATC 58.741 40.000 34.47 21.51 41.63 3.69
1615 4245 5.176407 AGTTACAGTGACTCGAGCATATC 57.824 43.478 13.61 2.77 0.00 1.63
1616 4246 5.344066 CAAGTTACAGTGACTCGAGCATAT 58.656 41.667 13.61 2.41 0.00 1.78
1618 4248 3.579709 CAAGTTACAGTGACTCGAGCAT 58.420 45.455 13.61 0.00 0.00 3.79
1619 4249 2.288213 CCAAGTTACAGTGACTCGAGCA 60.288 50.000 13.61 8.95 0.00 4.26
1620 4250 2.288273 ACCAAGTTACAGTGACTCGAGC 60.288 50.000 13.61 6.11 0.00 5.03
1621 4251 3.004419 TGACCAAGTTACAGTGACTCGAG 59.996 47.826 11.84 11.84 0.00 4.04
1622 4252 2.953648 TGACCAAGTTACAGTGACTCGA 59.046 45.455 0.00 0.00 0.00 4.04
1670 4300 1.497278 CAGACCGGCATTGTTCACG 59.503 57.895 0.00 0.00 0.00 4.35
1690 4320 0.874175 CTCGAACCAGCACACGTTGA 60.874 55.000 0.00 0.00 0.00 3.18
1721 4351 0.384725 CTTGCTTGAAAGTGGCGACG 60.385 55.000 0.00 0.00 0.00 5.12
1752 4382 2.943449 GTAGAGAACCAAGGACGGAG 57.057 55.000 0.00 0.00 0.00 4.63
1779 4409 2.619074 GCACAAGAGCAGAGGGGTAAAT 60.619 50.000 0.00 0.00 0.00 1.40
1784 4414 0.676151 GAAGCACAAGAGCAGAGGGG 60.676 60.000 0.00 0.00 36.85 4.79
1789 4435 0.797542 GCAGAGAAGCACAAGAGCAG 59.202 55.000 0.00 0.00 36.85 4.24
1792 4438 1.275856 AGGAGCAGAGAAGCACAAGAG 59.724 52.381 0.00 0.00 36.85 2.85
1846 4502 9.615660 TGGAAGGAGATGGTATACAATTATACT 57.384 33.333 5.01 0.00 40.02 2.12
1849 4505 9.116080 TCATGGAAGGAGATGGTATACAATTAT 57.884 33.333 5.01 0.00 0.00 1.28
1850 4506 8.504811 TCATGGAAGGAGATGGTATACAATTA 57.495 34.615 5.01 0.00 0.00 1.40
1851 4507 7.392766 TCATGGAAGGAGATGGTATACAATT 57.607 36.000 5.01 0.00 0.00 2.32
1852 4508 7.400439 CATCATGGAAGGAGATGGTATACAAT 58.600 38.462 5.01 0.00 36.41 2.71
1853 4509 6.745190 GCATCATGGAAGGAGATGGTATACAA 60.745 42.308 5.01 0.00 39.53 2.41
1854 4510 5.280164 GCATCATGGAAGGAGATGGTATACA 60.280 44.000 5.01 0.00 39.53 2.29
1855 4511 5.046014 AGCATCATGGAAGGAGATGGTATAC 60.046 44.000 4.72 0.00 45.46 1.47
1860 4516 2.105993 TGAGCATCATGGAAGGAGATGG 59.894 50.000 0.00 0.00 42.56 3.51
1880 4536 4.142425 TGCAGCACAACACCAACATATATG 60.142 41.667 11.29 11.29 0.00 1.78
1885 4541 0.386476 CTGCAGCACAACACCAACAT 59.614 50.000 0.00 0.00 0.00 2.71
1894 4550 1.153269 TTCACGTCCTGCAGCACAA 60.153 52.632 8.83 0.00 0.00 3.33
1952 4608 3.062466 CGGCTCCTCGTCAGGTGA 61.062 66.667 0.00 0.00 41.28 4.02
1973 4629 3.175152 CGAGGAGTTGACGAAGATCTTG 58.825 50.000 14.00 7.95 0.00 3.02
2044 4700 2.961062 GCAATGCTGGAGGGATTTGTAT 59.039 45.455 0.00 0.00 33.68 2.29
2059 4715 0.813821 GGGAGAAGGAACTGCAATGC 59.186 55.000 0.00 0.00 40.86 3.56
2074 4730 0.902531 TCCGCAAACTAGGAAGGGAG 59.097 55.000 0.00 0.00 32.86 4.30
2081 4737 0.034896 ACACAGGTCCGCAAACTAGG 59.965 55.000 0.00 0.00 0.00 3.02
2105 4761 2.127383 AGCTTAAAACACGCGCGC 60.127 55.556 32.58 23.91 0.00 6.86
2106 4762 1.853192 CGAGCTTAAAACACGCGCG 60.853 57.895 30.96 30.96 40.19 6.86
2108 4764 0.782384 AGTCGAGCTTAAAACACGCG 59.218 50.000 3.53 3.53 0.00 6.01
2109 4765 2.943843 AAGTCGAGCTTAAAACACGC 57.056 45.000 0.00 0.00 35.27 5.34
2110 4766 4.323751 GCATAAGTCGAGCTTAAAACACG 58.676 43.478 10.21 0.00 42.35 4.49
2112 4835 3.991773 ACGCATAAGTCGAGCTTAAAACA 59.008 39.130 10.21 0.00 42.35 2.83
2113 4836 4.143179 ACACGCATAAGTCGAGCTTAAAAC 60.143 41.667 10.21 4.44 42.35 2.43
2118 4841 2.080286 AACACGCATAAGTCGAGCTT 57.920 45.000 0.00 5.74 41.05 3.74
2121 4844 3.242944 CCACATAACACGCATAAGTCGAG 59.757 47.826 0.00 0.00 0.00 4.04
2128 4851 2.223456 GCAATGCCACATAACACGCATA 60.223 45.455 0.00 0.00 40.96 3.14
2131 4854 0.109365 TGCAATGCCACATAACACGC 60.109 50.000 1.53 0.00 0.00 5.34
2138 4861 1.389609 GCTAGCCTGCAATGCCACAT 61.390 55.000 2.29 0.00 0.00 3.21
2139 4862 2.048023 GCTAGCCTGCAATGCCACA 61.048 57.895 2.29 0.00 0.00 4.17
2142 4865 3.607163 TTGCTAGCCTGCAATGCC 58.393 55.556 13.29 0.00 46.43 4.40
2292 5021 0.446616 TCGTGTCTTGATCGACCTCG 59.553 55.000 0.00 4.47 41.45 4.63
2324 5053 1.141645 GTATTCCGTGTCGTGCAACA 58.858 50.000 0.00 0.00 35.74 3.33
2325 5054 1.136446 GTGTATTCCGTGTCGTGCAAC 60.136 52.381 0.00 0.00 0.00 4.17
2327 5056 0.032267 TGTGTATTCCGTGTCGTGCA 59.968 50.000 0.00 0.00 0.00 4.57
2328 5057 1.141645 TTGTGTATTCCGTGTCGTGC 58.858 50.000 0.00 0.00 0.00 5.34
2330 5059 3.655486 TCAATTGTGTATTCCGTGTCGT 58.345 40.909 5.13 0.00 0.00 4.34
2332 5061 6.607689 TCAAATCAATTGTGTATTCCGTGTC 58.392 36.000 5.13 0.00 40.11 3.67
2334 5063 7.970061 AGAATCAAATCAATTGTGTATTCCGTG 59.030 33.333 5.13 0.00 40.11 4.94
2347 5076 8.446273 CGACAACTTCTACAGAATCAAATCAAT 58.554 33.333 0.00 0.00 33.01 2.57
2624 5353 2.420890 CTCCTCGCCCTCATCTGC 59.579 66.667 0.00 0.00 0.00 4.26
2702 5431 4.023450 CGTAGCATCTACTCCCGTTTGATA 60.023 45.833 2.96 0.00 0.00 2.15
2786 5517 9.088987 ACTTAAATTTACACAAACCATCCATCT 57.911 29.630 0.00 0.00 0.00 2.90
2814 5561 6.531439 ACAAAATCATACTTAGTTCGAACGC 58.469 36.000 21.87 0.00 0.00 4.84
2848 5598 8.834465 TGAGAGATTCAAAAGAAGAGAGTTTTG 58.166 33.333 1.89 1.89 42.53 2.44
2875 5625 2.276201 GTTTTCTTGTTGGGTGGTTGC 58.724 47.619 0.00 0.00 0.00 4.17
2880 5630 1.474879 ACGGTGTTTTCTTGTTGGGTG 59.525 47.619 0.00 0.00 0.00 4.61
2881 5631 1.842052 ACGGTGTTTTCTTGTTGGGT 58.158 45.000 0.00 0.00 0.00 4.51
2882 5632 2.425668 AGAACGGTGTTTTCTTGTTGGG 59.574 45.455 0.00 0.00 28.36 4.12
2883 5633 3.775661 AGAACGGTGTTTTCTTGTTGG 57.224 42.857 0.00 0.00 28.36 3.77
2884 5634 5.631512 TCAAAAGAACGGTGTTTTCTTGTTG 59.368 36.000 5.18 8.84 41.48 3.33
2885 5635 5.774630 TCAAAAGAACGGTGTTTTCTTGTT 58.225 33.333 5.18 0.00 41.48 2.83
2886 5636 5.379732 TCAAAAGAACGGTGTTTTCTTGT 57.620 34.783 5.18 0.00 41.48 3.16
2887 5637 6.237808 CCATTCAAAAGAACGGTGTTTTCTTG 60.238 38.462 5.18 4.15 41.48 3.02
2896 5646 3.568430 GGACTTCCATTCAAAAGAACGGT 59.432 43.478 0.00 0.00 35.64 4.83
2899 5649 4.613850 GCGAGGACTTCCATTCAAAAGAAC 60.614 45.833 0.00 0.00 38.89 3.01
2917 5667 0.309922 TCTAAATACGGAGCGCGAGG 59.690 55.000 12.10 0.00 0.00 4.63
2930 5680 7.805071 CGCTGTGAACAAATCTTCTTTCTAAAT 59.195 33.333 0.00 0.00 0.00 1.40
2955 5711 1.140161 CACCCATCCATTTGCAGCG 59.860 57.895 0.00 0.00 0.00 5.18
2993 5749 2.280119 TGTGTGTGCGAGGTGCTC 60.280 61.111 0.00 0.00 46.63 4.26
2997 5753 0.675208 TTTGTGTGTGTGTGCGAGGT 60.675 50.000 0.00 0.00 0.00 3.85
3024 5780 7.694388 ATGCTCCGTTTAAGTTTTTCTTTTC 57.306 32.000 0.00 0.00 37.56 2.29
3025 5781 8.192110 TGTATGCTCCGTTTAAGTTTTTCTTTT 58.808 29.630 0.00 0.00 37.56 2.27
3026 5782 7.708998 TGTATGCTCCGTTTAAGTTTTTCTTT 58.291 30.769 0.00 0.00 37.56 2.52
3027 5783 7.266922 TGTATGCTCCGTTTAAGTTTTTCTT 57.733 32.000 0.00 0.00 39.89 2.52
3028 5784 6.870971 TGTATGCTCCGTTTAAGTTTTTCT 57.129 33.333 0.00 0.00 0.00 2.52
3029 5785 6.085849 CGTTGTATGCTCCGTTTAAGTTTTTC 59.914 38.462 0.00 0.00 0.00 2.29
3030 5786 5.910723 CGTTGTATGCTCCGTTTAAGTTTTT 59.089 36.000 0.00 0.00 0.00 1.94
3031 5787 5.445845 CGTTGTATGCTCCGTTTAAGTTTT 58.554 37.500 0.00 0.00 0.00 2.43
3037 5793 2.008045 GCCCGTTGTATGCTCCGTTTA 61.008 52.381 0.00 0.00 0.00 2.01
3042 5798 0.107654 AGAAGCCCGTTGTATGCTCC 60.108 55.000 0.00 0.00 33.36 4.70
3091 5849 1.298157 GCCGCATGCACACAGAACTA 61.298 55.000 19.57 0.00 40.77 2.24
3092 5850 2.620112 GCCGCATGCACACAGAACT 61.620 57.895 19.57 0.00 40.77 3.01
3093 5851 2.126734 GCCGCATGCACACAGAAC 60.127 61.111 19.57 0.00 40.77 3.01
3094 5852 3.364441 GGCCGCATGCACACAGAA 61.364 61.111 19.57 0.00 43.89 3.02
3123 5881 0.229247 CGTTTCGTGCGGTCGTTTTA 59.771 50.000 0.00 0.00 0.00 1.52
3237 6012 1.454663 GCAGGATCCTCCTTTGGGC 60.455 63.158 12.69 6.77 46.91 5.36
3288 6068 2.707849 CCCTACGACGGTGGACCTG 61.708 68.421 9.51 0.00 0.00 4.00
3295 6075 1.098050 GTGTGTATCCCTACGACGGT 58.902 55.000 0.00 0.00 0.00 4.83
3336 6116 1.663379 ATCGTCATCGGCGTCCTTGA 61.663 55.000 6.85 3.66 37.69 3.02
3404 6184 1.153667 GAGGAAGAGCACGAGCAGG 60.154 63.158 7.77 0.00 45.49 4.85
3521 6301 1.371183 GCATACCTCGCCTATGCCA 59.629 57.895 7.28 0.00 40.39 4.92
3556 6336 1.103803 TCCTGGAGAGACGTATGCAC 58.896 55.000 0.00 0.00 0.00 4.57
3576 6356 4.332543 CGTATAGAAAAGGTGAAGCATGCA 59.667 41.667 21.98 0.00 0.00 3.96
3577 6357 4.260784 CCGTATAGAAAAGGTGAAGCATGC 60.261 45.833 10.51 10.51 0.00 4.06
3578 6358 4.876107 ACCGTATAGAAAAGGTGAAGCATG 59.124 41.667 0.00 0.00 35.36 4.06
3608 6438 5.236478 GCAGACACAAACAAGAAACTAGCTA 59.764 40.000 0.00 0.00 0.00 3.32
3629 6459 2.124983 ATACGCCAGGTGCTGCAG 60.125 61.111 10.11 10.11 38.05 4.41
3632 6462 0.459899 TACTCATACGCCAGGTGCTG 59.540 55.000 0.00 0.00 38.05 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.