Multiple sequence alignment - TraesCS2B01G299300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G299300 chr2B 100.000 7071 0 0 1 7071 419611679 419618749 0.000000e+00 13058.0
1 TraesCS2B01G299300 chr2B 91.623 382 26 2 1 379 514026661 514027039 2.260000e-144 523.0
2 TraesCS2B01G299300 chr2B 91.623 382 26 2 1 379 567697399 567697021 2.260000e-144 523.0
3 TraesCS2B01G299300 chr2B 91.406 384 27 2 1 381 517441050 517441430 8.130000e-144 521.0
4 TraesCS2B01G299300 chr2B 91.406 384 26 3 1 381 630178647 630179026 2.920000e-143 520.0
5 TraesCS2B01G299300 chr2B 82.609 161 22 4 2820 2977 469310993 469310836 3.440000e-28 137.0
6 TraesCS2B01G299300 chr2B 85.586 111 15 1 2856 2966 11290146 11290255 1.610000e-21 115.0
7 TraesCS2B01G299300 chr2D 96.040 6338 148 30 766 7071 353065810 353072076 0.000000e+00 10218.0
8 TraesCS2B01G299300 chr2D 94.643 112 5 1 592 702 353063902 353064013 9.430000e-39 172.0
9 TraesCS2B01G299300 chr2D 82.632 190 27 5 409 593 534365352 534365164 5.680000e-36 163.0
10 TraesCS2B01G299300 chr2A 96.663 4495 94 19 2000 6477 471251799 471256254 0.000000e+00 7419.0
11 TraesCS2B01G299300 chr2A 89.771 1662 88 40 381 1998 471250005 471251628 0.000000e+00 2052.0
12 TraesCS2B01G299300 chr2A 93.254 252 16 1 6712 6963 471257230 471257480 3.120000e-98 370.0
13 TraesCS2B01G299300 chr2A 92.157 153 10 2 6479 6630 471256296 471256447 1.540000e-51 215.0
14 TraesCS2B01G299300 chr2A 93.204 103 6 1 6528 6630 471256459 471256560 4.420000e-32 150.0
15 TraesCS2B01G299300 chr2A 81.065 169 28 3 428 593 193726265 193726098 1.600000e-26 132.0
16 TraesCS2B01G299300 chr6B 90.727 399 29 4 1 394 189356393 189356788 6.280000e-145 525.0
17 TraesCS2B01G299300 chr6B 83.333 168 26 2 391 556 493355864 493355697 3.420000e-33 154.0
18 TraesCS2B01G299300 chr6B 88.889 90 4 4 2891 2977 508041548 508041634 9.700000e-19 106.0
19 TraesCS2B01G299300 chr7B 91.406 384 25 4 1 381 132963780 132964158 2.920000e-143 520.0
20 TraesCS2B01G299300 chr7B 91.169 385 27 3 1 382 656555490 656555110 3.780000e-142 516.0
21 TraesCS2B01G299300 chr7B 83.152 552 74 10 1 546 726717255 726717793 2.970000e-133 486.0
22 TraesCS2B01G299300 chr5B 90.769 390 28 5 2 388 539621433 539621049 1.360000e-141 514.0
23 TraesCS2B01G299300 chr5B 80.702 171 18 4 2820 2977 58389035 58388867 1.250000e-22 119.0
24 TraesCS2B01G299300 chr5D 82.447 188 31 2 391 576 513972602 513972789 5.680000e-36 163.0
25 TraesCS2B01G299300 chr6D 92.308 104 8 0 1102 1205 19348801 19348904 1.590000e-31 148.0
26 TraesCS2B01G299300 chr6D 83.439 157 26 0 421 577 461525385 461525541 5.720000e-31 147.0
27 TraesCS2B01G299300 chr3D 83.851 161 20 4 2820 2977 4746019 4745862 1.590000e-31 148.0
28 TraesCS2B01G299300 chr6A 89.189 111 12 0 478 588 586845903 586845793 9.560000e-29 139.0
29 TraesCS2B01G299300 chr1B 88.889 90 4 4 2891 2977 122341530 122341616 9.700000e-19 106.0
30 TraesCS2B01G299300 chr4B 81.746 126 22 1 469 593 637340196 637340321 3.490000e-18 104.0
31 TraesCS2B01G299300 chr4B 87.778 90 5 4 2891 2977 117900714 117900800 4.510000e-17 100.0
32 TraesCS2B01G299300 chr1A 88.506 87 4 4 2894 2977 481370105 481370022 4.510000e-17 100.0
33 TraesCS2B01G299300 chr3B 83.333 96 14 2 495 589 7999028 7998934 3.510000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G299300 chr2B 419611679 419618749 7070 False 13058.0 13058 100.0000 1 7071 1 chr2B.!!$F2 7070
1 TraesCS2B01G299300 chr2D 353063902 353072076 8174 False 5195.0 10218 95.3415 592 7071 2 chr2D.!!$F1 6479
2 TraesCS2B01G299300 chr2A 471250005 471257480 7475 False 2041.2 7419 93.0098 381 6963 5 chr2A.!!$F1 6582
3 TraesCS2B01G299300 chr7B 726717255 726717793 538 False 486.0 486 83.1520 1 546 1 chr7B.!!$F2 545

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
407 408 0.034896 ATTGCACGAAGACTTCCCGT 59.965 50.000 9.63 2.94 36.95 5.28 F
412 413 0.318445 ACGAAGACTTCCCGTTGTCG 60.318 55.000 9.63 0.00 38.16 4.35 F
879 2639 0.454620 CTGTCCAGTCGTGCTCGTAC 60.455 60.000 8.17 5.50 38.33 3.67 F
1243 3005 0.835941 CCTCCAGCAGCTCAAGGTAT 59.164 55.000 10.46 0.00 0.00 2.73 F
2679 4648 1.135139 CTGTACCAGATCTCCACGTGG 59.865 57.143 29.26 29.26 32.44 4.94 F
5020 7004 0.894141 AGCTGTTTGTGCCAACAACA 59.106 45.000 0.00 0.00 45.91 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1243 3005 0.108774 TGCGTTTCCATGGGTGTACA 59.891 50.000 13.02 2.62 0.00 2.90 R
1424 3198 0.469705 TGGAATTGTGCAGGGCTGTT 60.470 50.000 0.00 0.00 0.00 3.16 R
2824 4793 0.171231 CGCCTAGGCTTGCCTTTTTC 59.829 55.000 30.55 6.21 39.32 2.29 R
4212 6193 9.846248 CCCTTTTCTTTCTTTACTATTGTGATG 57.154 33.333 0.00 0.00 0.00 3.07 R
5368 7353 0.909623 ATGTTACCCTCCCAAGTCCG 59.090 55.000 0.00 0.00 0.00 4.79 R
7041 9839 1.000274 GCCAAGTTTGAGAAATGCGGT 60.000 47.619 0.00 0.00 0.00 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.093278 CATTTCTCCGCTGTCCGC 58.907 61.111 0.00 0.00 35.03 5.54
39 40 4.984785 GCGAGTTGCATAATCTCATAGTCA 59.015 41.667 0.00 0.00 45.45 3.41
40 41 5.118357 GCGAGTTGCATAATCTCATAGTCAG 59.882 44.000 0.00 0.00 45.45 3.51
43 44 6.757237 AGTTGCATAATCTCATAGTCAGAGG 58.243 40.000 0.00 0.00 33.92 3.69
84 85 9.683069 ATGAAGAAAACAGTAGCAATAAAACTG 57.317 29.630 0.37 0.37 34.85 3.16
87 88 9.516314 AAGAAAACAGTAGCAATAAAACTGAAC 57.484 29.630 8.57 0.00 33.15 3.18
108 109 6.983890 TGAACGATCATTATGCTAAGCTAACA 59.016 34.615 0.00 0.00 0.00 2.41
109 110 7.494298 TGAACGATCATTATGCTAAGCTAACAA 59.506 33.333 0.00 0.00 0.00 2.83
142 143 7.616528 TGTCCATCACATCATTCTCCTAATA 57.383 36.000 0.00 0.00 0.00 0.98
151 152 9.722184 CACATCATTCTCCTAATAATGTGATCT 57.278 33.333 7.85 0.00 43.10 2.75
153 154 9.085250 CATCATTCTCCTAATAATGTGATCTCG 57.915 37.037 0.00 0.00 35.16 4.04
154 155 8.183104 TCATTCTCCTAATAATGTGATCTCGT 57.817 34.615 0.00 0.00 35.16 4.18
156 157 8.920665 CATTCTCCTAATAATGTGATCTCGTTC 58.079 37.037 5.53 0.00 0.00 3.95
157 158 7.582667 TCTCCTAATAATGTGATCTCGTTCA 57.417 36.000 5.53 0.00 0.00 3.18
158 159 8.183104 TCTCCTAATAATGTGATCTCGTTCAT 57.817 34.615 5.53 0.23 0.00 2.57
159 160 8.300286 TCTCCTAATAATGTGATCTCGTTCATC 58.700 37.037 5.53 0.00 0.00 2.92
160 161 7.951591 TCCTAATAATGTGATCTCGTTCATCA 58.048 34.615 5.53 0.00 0.00 3.07
161 162 8.421002 TCCTAATAATGTGATCTCGTTCATCAA 58.579 33.333 5.53 0.00 31.98 2.57
162 163 9.045223 CCTAATAATGTGATCTCGTTCATCAAA 57.955 33.333 5.53 0.00 31.98 2.69
165 166 6.990341 AATGTGATCTCGTTCATCAAATGA 57.010 33.333 0.00 0.00 37.55 2.57
166 167 5.784750 TGTGATCTCGTTCATCAAATGAC 57.215 39.130 0.00 0.00 39.39 3.06
167 168 5.237048 TGTGATCTCGTTCATCAAATGACA 58.763 37.500 0.00 0.00 39.39 3.58
168 169 5.700373 TGTGATCTCGTTCATCAAATGACAA 59.300 36.000 0.00 0.00 39.39 3.18
169 170 6.017933 GTGATCTCGTTCATCAAATGACAAC 58.982 40.000 0.00 0.00 39.39 3.32
170 171 5.700373 TGATCTCGTTCATCAAATGACAACA 59.300 36.000 0.00 0.00 39.39 3.33
171 172 5.342806 TCTCGTTCATCAAATGACAACAC 57.657 39.130 7.48 0.00 39.39 3.32
172 173 4.813697 TCTCGTTCATCAAATGACAACACA 59.186 37.500 7.48 0.00 39.39 3.72
173 174 5.469760 TCTCGTTCATCAAATGACAACACAT 59.530 36.000 7.48 0.00 39.39 3.21
174 175 5.451039 TCGTTCATCAAATGACAACACATG 58.549 37.500 0.00 0.00 39.39 3.21
186 187 3.889815 ACAACACATGTCCATGGATAGG 58.110 45.455 19.62 19.89 42.91 2.57
187 188 3.523157 ACAACACATGTCCATGGATAGGA 59.477 43.478 27.16 8.91 42.91 2.94
188 189 4.018506 ACAACACATGTCCATGGATAGGAA 60.019 41.667 27.16 8.12 42.91 3.36
189 190 4.860802 ACACATGTCCATGGATAGGAAA 57.139 40.909 27.16 6.44 42.91 3.13
190 191 4.526970 ACACATGTCCATGGATAGGAAAC 58.473 43.478 27.16 10.09 42.91 2.78
191 192 4.228210 ACACATGTCCATGGATAGGAAACT 59.772 41.667 27.16 4.27 42.91 2.66
192 193 5.195940 CACATGTCCATGGATAGGAAACTT 58.804 41.667 27.16 3.90 42.91 2.66
193 194 6.069673 ACACATGTCCATGGATAGGAAACTTA 60.070 38.462 27.16 0.00 42.91 2.24
194 195 6.828273 CACATGTCCATGGATAGGAAACTTAA 59.172 38.462 27.16 0.00 42.91 1.85
195 196 6.828785 ACATGTCCATGGATAGGAAACTTAAC 59.171 38.462 27.16 7.24 42.91 2.01
196 197 5.751586 TGTCCATGGATAGGAAACTTAACC 58.248 41.667 19.62 0.00 43.67 2.85
197 198 5.251932 TGTCCATGGATAGGAAACTTAACCA 59.748 40.000 19.62 2.57 43.67 3.67
198 199 6.069088 TGTCCATGGATAGGAAACTTAACCAT 60.069 38.462 19.62 0.00 42.64 3.55
199 200 6.833933 GTCCATGGATAGGAAACTTAACCATT 59.166 38.462 19.62 0.00 41.19 3.16
200 201 7.342026 GTCCATGGATAGGAAACTTAACCATTT 59.658 37.037 19.62 0.00 41.19 2.32
201 202 7.898636 TCCATGGATAGGAAACTTAACCATTTT 59.101 33.333 11.44 0.00 41.19 1.82
202 203 8.539544 CCATGGATAGGAAACTTAACCATTTTT 58.460 33.333 5.56 0.00 41.19 1.94
203 204 9.369904 CATGGATAGGAAACTTAACCATTTTTG 57.630 33.333 0.00 0.00 41.19 2.44
204 205 8.713708 TGGATAGGAAACTTAACCATTTTTGA 57.286 30.769 0.00 0.00 43.67 2.69
205 206 9.320295 TGGATAGGAAACTTAACCATTTTTGAT 57.680 29.630 0.00 0.00 43.67 2.57
210 211 9.471084 AGGAAACTTAACCATTTTTGATAAACG 57.529 29.630 0.00 0.00 37.44 3.60
211 212 9.465985 GGAAACTTAACCATTTTTGATAAACGA 57.534 29.630 0.00 0.00 0.00 3.85
213 214 8.515473 AACTTAACCATTTTTGATAAACGAGC 57.485 30.769 0.00 0.00 0.00 5.03
214 215 7.882179 ACTTAACCATTTTTGATAAACGAGCT 58.118 30.769 0.00 0.00 0.00 4.09
215 216 9.005777 ACTTAACCATTTTTGATAAACGAGCTA 57.994 29.630 0.00 0.00 0.00 3.32
216 217 9.490663 CTTAACCATTTTTGATAAACGAGCTAG 57.509 33.333 0.00 0.00 0.00 3.42
217 218 7.448748 AACCATTTTTGATAAACGAGCTAGT 57.551 32.000 0.00 0.00 0.00 2.57
218 219 6.842163 ACCATTTTTGATAAACGAGCTAGTG 58.158 36.000 0.00 0.00 0.00 2.74
219 220 6.653320 ACCATTTTTGATAAACGAGCTAGTGA 59.347 34.615 0.00 0.00 0.00 3.41
220 221 7.174253 ACCATTTTTGATAAACGAGCTAGTGAA 59.826 33.333 0.00 0.00 0.00 3.18
221 222 7.693951 CCATTTTTGATAAACGAGCTAGTGAAG 59.306 37.037 0.00 0.00 0.00 3.02
222 223 7.724305 TTTTTGATAAACGAGCTAGTGAAGT 57.276 32.000 0.00 0.00 0.00 3.01
223 224 8.821147 TTTTTGATAAACGAGCTAGTGAAGTA 57.179 30.769 0.00 0.00 0.00 2.24
224 225 8.462143 TTTTGATAAACGAGCTAGTGAAGTAG 57.538 34.615 0.00 0.00 0.00 2.57
225 226 6.997239 TGATAAACGAGCTAGTGAAGTAGA 57.003 37.500 0.00 0.00 0.00 2.59
226 227 7.017498 TGATAAACGAGCTAGTGAAGTAGAG 57.983 40.000 0.00 0.00 0.00 2.43
227 228 4.705337 AAACGAGCTAGTGAAGTAGAGG 57.295 45.455 0.00 0.00 0.00 3.69
228 229 2.018515 ACGAGCTAGTGAAGTAGAGGC 58.981 52.381 0.00 0.00 0.00 4.70
229 230 2.017782 CGAGCTAGTGAAGTAGAGGCA 58.982 52.381 0.00 0.00 0.00 4.75
230 231 2.621055 CGAGCTAGTGAAGTAGAGGCAT 59.379 50.000 0.00 0.00 0.00 4.40
231 232 3.815962 CGAGCTAGTGAAGTAGAGGCATA 59.184 47.826 0.00 0.00 0.00 3.14
232 233 4.319911 CGAGCTAGTGAAGTAGAGGCATAC 60.320 50.000 0.00 0.00 0.00 2.39
233 234 4.798882 AGCTAGTGAAGTAGAGGCATACT 58.201 43.478 0.00 0.00 37.61 2.12
234 235 5.942961 AGCTAGTGAAGTAGAGGCATACTA 58.057 41.667 3.23 0.00 34.90 1.82
235 236 6.001460 AGCTAGTGAAGTAGAGGCATACTAG 58.999 44.000 0.00 0.00 39.21 2.57
236 237 5.182380 GCTAGTGAAGTAGAGGCATACTAGG 59.818 48.000 0.00 0.00 37.60 3.02
237 238 4.475345 AGTGAAGTAGAGGCATACTAGGG 58.525 47.826 3.23 0.00 34.90 3.53
238 239 4.168283 AGTGAAGTAGAGGCATACTAGGGA 59.832 45.833 3.23 0.00 34.90 4.20
239 240 4.278919 GTGAAGTAGAGGCATACTAGGGAC 59.721 50.000 3.23 0.00 34.90 4.46
240 241 4.079385 TGAAGTAGAGGCATACTAGGGACA 60.079 45.833 3.23 0.00 34.90 4.02
241 242 3.834938 AGTAGAGGCATACTAGGGACAC 58.165 50.000 0.00 0.00 34.21 3.67
242 243 1.693627 AGAGGCATACTAGGGACACG 58.306 55.000 0.00 0.00 0.00 4.49
243 244 1.214673 AGAGGCATACTAGGGACACGA 59.785 52.381 0.00 0.00 0.00 4.35
244 245 2.158445 AGAGGCATACTAGGGACACGAT 60.158 50.000 0.00 0.00 0.00 3.73
245 246 3.074094 AGAGGCATACTAGGGACACGATA 59.926 47.826 0.00 0.00 0.00 2.92
246 247 4.017808 GAGGCATACTAGGGACACGATAT 58.982 47.826 0.00 0.00 0.00 1.63
247 248 4.417437 AGGCATACTAGGGACACGATATT 58.583 43.478 0.00 0.00 0.00 1.28
248 249 4.838986 AGGCATACTAGGGACACGATATTT 59.161 41.667 0.00 0.00 0.00 1.40
249 250 5.307196 AGGCATACTAGGGACACGATATTTT 59.693 40.000 0.00 0.00 0.00 1.82
250 251 5.408604 GGCATACTAGGGACACGATATTTTG 59.591 44.000 0.00 0.00 0.00 2.44
251 252 5.989777 GCATACTAGGGACACGATATTTTGT 59.010 40.000 0.00 0.00 0.00 2.83
252 253 6.145696 GCATACTAGGGACACGATATTTTGTC 59.854 42.308 8.48 8.48 41.28 3.18
253 254 5.934402 ACTAGGGACACGATATTTTGTCT 57.066 39.130 14.16 2.73 41.65 3.41
254 255 8.573885 CATACTAGGGACACGATATTTTGTCTA 58.426 37.037 14.16 3.33 41.65 2.59
255 256 7.598759 ACTAGGGACACGATATTTTGTCTAT 57.401 36.000 14.16 8.14 41.65 1.98
256 257 7.434492 ACTAGGGACACGATATTTTGTCTATG 58.566 38.462 14.16 7.62 41.65 2.23
257 258 6.235231 AGGGACACGATATTTTGTCTATGT 57.765 37.500 14.16 0.00 41.65 2.29
258 259 7.356089 AGGGACACGATATTTTGTCTATGTA 57.644 36.000 14.16 0.00 41.65 2.29
259 260 7.963532 AGGGACACGATATTTTGTCTATGTAT 58.036 34.615 14.16 0.00 41.65 2.29
260 261 8.429641 AGGGACACGATATTTTGTCTATGTATT 58.570 33.333 14.16 0.00 41.65 1.89
261 262 8.709646 GGGACACGATATTTTGTCTATGTATTC 58.290 37.037 14.16 0.44 41.65 1.75
262 263 9.256477 GGACACGATATTTTGTCTATGTATTCA 57.744 33.333 14.16 0.00 41.65 2.57
264 265 9.594478 ACACGATATTTTGTCTATGTATTCACA 57.406 29.630 0.00 0.00 39.52 3.58
265 266 9.849607 CACGATATTTTGTCTATGTATTCACAC 57.150 33.333 0.00 0.00 37.54 3.82
266 267 9.594478 ACGATATTTTGTCTATGTATTCACACA 57.406 29.630 0.00 0.00 37.54 3.72
267 268 9.849607 CGATATTTTGTCTATGTATTCACACAC 57.150 33.333 0.00 0.00 37.54 3.82
268 269 9.849607 GATATTTTGTCTATGTATTCACACACG 57.150 33.333 0.00 0.00 37.54 4.49
269 270 7.667043 ATTTTGTCTATGTATTCACACACGT 57.333 32.000 0.00 0.00 37.54 4.49
270 271 8.766000 ATTTTGTCTATGTATTCACACACGTA 57.234 30.769 0.00 0.00 37.54 3.57
271 272 8.590719 TTTTGTCTATGTATTCACACACGTAA 57.409 30.769 0.00 0.00 37.54 3.18
272 273 7.806149 TTGTCTATGTATTCACACACGTAAG 57.194 36.000 0.00 0.00 37.54 2.34
273 274 6.916440 TGTCTATGTATTCACACACGTAAGT 58.084 36.000 0.00 0.00 45.25 2.24
274 275 7.372714 TGTCTATGTATTCACACACGTAAGTT 58.627 34.615 0.00 0.00 43.74 2.66
275 276 7.868922 TGTCTATGTATTCACACACGTAAGTTT 59.131 33.333 0.00 0.00 43.74 2.66
276 277 8.706035 GTCTATGTATTCACACACGTAAGTTTT 58.294 33.333 0.00 0.00 43.74 2.43
277 278 8.918658 TCTATGTATTCACACACGTAAGTTTTC 58.081 33.333 0.00 0.00 43.74 2.29
278 279 6.586751 ATGTATTCACACACGTAAGTTTTCG 58.413 36.000 0.00 0.00 43.74 3.46
279 280 6.347079 ATGTATTCACACACGTAAGTTTTCGG 60.347 38.462 0.00 0.00 43.74 4.30
280 281 8.637103 ATGTATTCACACACGTAAGTTTTCGGT 61.637 37.037 0.00 0.00 43.74 4.69
367 368 9.474313 AACAAATTTATTATTGTCTCTAGGGCA 57.526 29.630 0.00 0.00 38.75 5.36
368 369 8.903820 ACAAATTTATTATTGTCTCTAGGGCAC 58.096 33.333 0.00 0.00 34.84 5.01
369 370 8.902806 CAAATTTATTATTGTCTCTAGGGCACA 58.097 33.333 0.00 0.00 0.00 4.57
370 371 9.646522 AAATTTATTATTGTCTCTAGGGCACAT 57.353 29.630 0.00 0.00 0.00 3.21
371 372 9.646522 AATTTATTATTGTCTCTAGGGCACATT 57.353 29.630 0.00 0.00 0.00 2.71
372 373 9.646522 ATTTATTATTGTCTCTAGGGCACATTT 57.353 29.630 0.00 0.00 0.00 2.32
373 374 8.677148 TTATTATTGTCTCTAGGGCACATTTC 57.323 34.615 0.00 0.00 0.00 2.17
374 375 3.350219 TTGTCTCTAGGGCACATTTCC 57.650 47.619 0.00 0.00 0.00 3.13
375 376 2.551270 TGTCTCTAGGGCACATTTCCT 58.449 47.619 0.00 0.00 37.18 3.36
376 377 2.912956 TGTCTCTAGGGCACATTTCCTT 59.087 45.455 0.00 0.00 34.75 3.36
377 378 3.055094 TGTCTCTAGGGCACATTTCCTTC 60.055 47.826 0.00 0.00 34.75 3.46
378 379 3.055094 GTCTCTAGGGCACATTTCCTTCA 60.055 47.826 0.00 0.00 34.75 3.02
379 380 3.198635 TCTCTAGGGCACATTTCCTTCAG 59.801 47.826 0.00 0.00 34.75 3.02
380 381 2.912956 TCTAGGGCACATTTCCTTCAGT 59.087 45.455 0.00 0.00 34.75 3.41
381 382 2.683211 AGGGCACATTTCCTTCAGTT 57.317 45.000 0.00 0.00 0.00 3.16
382 383 2.519013 AGGGCACATTTCCTTCAGTTC 58.481 47.619 0.00 0.00 0.00 3.01
383 384 1.200020 GGGCACATTTCCTTCAGTTCG 59.800 52.381 0.00 0.00 0.00 3.95
384 385 1.401539 GGCACATTTCCTTCAGTTCGC 60.402 52.381 0.00 0.00 0.00 4.70
385 386 1.725931 GCACATTTCCTTCAGTTCGCG 60.726 52.381 0.00 0.00 0.00 5.87
386 387 1.135972 CACATTTCCTTCAGTTCGCGG 60.136 52.381 6.13 0.00 0.00 6.46
387 388 0.179189 CATTTCCTTCAGTTCGCGGC 60.179 55.000 6.13 0.00 0.00 6.53
388 389 0.605319 ATTTCCTTCAGTTCGCGGCA 60.605 50.000 6.13 0.00 0.00 5.69
389 390 0.605319 TTTCCTTCAGTTCGCGGCAT 60.605 50.000 6.13 0.00 0.00 4.40
398 399 3.307505 TTCGCGGCATTGCACGAAG 62.308 57.895 25.43 16.42 41.24 3.79
405 406 0.169009 GCATTGCACGAAGACTTCCC 59.831 55.000 9.63 0.00 0.00 3.97
406 407 0.443869 CATTGCACGAAGACTTCCCG 59.556 55.000 9.63 2.28 0.00 5.14
407 408 0.034896 ATTGCACGAAGACTTCCCGT 59.965 50.000 9.63 2.94 36.95 5.28
409 410 0.878523 TGCACGAAGACTTCCCGTTG 60.879 55.000 9.63 3.54 33.96 4.10
410 411 0.878961 GCACGAAGACTTCCCGTTGT 60.879 55.000 9.63 0.00 33.96 3.32
411 412 1.137513 CACGAAGACTTCCCGTTGTC 58.862 55.000 9.63 0.00 33.96 3.18
412 413 0.318445 ACGAAGACTTCCCGTTGTCG 60.318 55.000 9.63 0.00 38.16 4.35
413 414 0.318445 CGAAGACTTCCCGTTGTCGT 60.318 55.000 9.63 0.00 38.16 4.34
414 415 1.861971 GAAGACTTCCCGTTGTCGTT 58.138 50.000 3.63 0.00 38.16 3.85
433 435 4.379243 ACAAGTCAGGCCGGCTCG 62.379 66.667 28.56 17.91 0.00 5.03
488 490 1.006825 CGTTCTGACGGCGACAATGA 61.007 55.000 16.62 5.44 45.32 2.57
508 510 0.611200 TCGTTCGGTGGTCCATGAAT 59.389 50.000 11.40 0.00 0.00 2.57
555 557 2.635915 AGGTGTTTTGTACCTCCGATGA 59.364 45.455 0.00 0.00 45.19 2.92
636 640 5.675538 AGTAGAGTATGTGGCAGGATTTTC 58.324 41.667 0.00 0.00 0.00 2.29
638 642 5.184892 AGAGTATGTGGCAGGATTTTCTT 57.815 39.130 0.00 0.00 0.00 2.52
715 726 2.362717 GACTGCTGTCCTATAGACCCAC 59.637 54.545 12.42 0.00 45.68 4.61
716 727 1.689273 CTGCTGTCCTATAGACCCACC 59.311 57.143 0.00 0.00 45.68 4.61
751 762 2.426381 GTTCGAGTCCGATCCTAACCTT 59.574 50.000 0.00 0.00 45.10 3.50
752 763 2.022195 TCGAGTCCGATCCTAACCTTG 58.978 52.381 0.00 0.00 40.30 3.61
754 765 1.757699 GAGTCCGATCCTAACCTTGCT 59.242 52.381 0.00 0.00 0.00 3.91
756 767 1.207329 GTCCGATCCTAACCTTGCTGT 59.793 52.381 0.00 0.00 0.00 4.40
805 2565 1.139734 CACCCGATCTGTCCAGTCG 59.860 63.158 10.36 10.36 34.30 4.18
806 2566 1.304217 ACCCGATCTGTCCAGTCGT 60.304 57.895 13.93 0.59 33.40 4.34
807 2567 1.139734 CCCGATCTGTCCAGTCGTG 59.860 63.158 13.93 4.14 33.40 4.35
808 2568 1.517257 CCGATCTGTCCAGTCGTGC 60.517 63.158 13.93 0.00 33.40 5.34
809 2569 1.508545 CGATCTGTCCAGTCGTGCT 59.491 57.895 9.57 0.00 31.89 4.40
810 2570 0.524392 CGATCTGTCCAGTCGTGCTC 60.524 60.000 9.57 0.00 31.89 4.26
811 2571 0.524392 GATCTGTCCAGTCGTGCTCG 60.524 60.000 0.81 0.81 38.55 5.03
812 2572 1.244697 ATCTGTCCAGTCGTGCTCGT 61.245 55.000 8.17 0.00 38.33 4.18
813 2573 1.730902 CTGTCCAGTCGTGCTCGTG 60.731 63.158 8.17 0.00 38.33 4.35
814 2574 3.106407 GTCCAGTCGTGCTCGTGC 61.106 66.667 8.17 1.71 38.33 5.34
815 2575 3.295273 TCCAGTCGTGCTCGTGCT 61.295 61.111 11.19 5.27 40.48 4.40
816 2576 2.807045 CCAGTCGTGCTCGTGCTC 60.807 66.667 11.19 6.24 40.48 4.26
874 2634 1.508545 CGATCTGTCCAGTCGTGCT 59.491 57.895 9.57 0.00 31.89 4.40
875 2635 0.524392 CGATCTGTCCAGTCGTGCTC 60.524 60.000 9.57 0.00 31.89 4.26
876 2636 0.524392 GATCTGTCCAGTCGTGCTCG 60.524 60.000 0.81 0.81 38.55 5.03
877 2637 1.244697 ATCTGTCCAGTCGTGCTCGT 61.245 55.000 8.17 0.00 38.33 4.18
878 2638 0.604511 TCTGTCCAGTCGTGCTCGTA 60.605 55.000 8.17 0.00 38.33 3.43
879 2639 0.454620 CTGTCCAGTCGTGCTCGTAC 60.455 60.000 8.17 5.50 38.33 3.67
914 2676 2.370633 GCTTCTCCTCCCCCTCCT 59.629 66.667 0.00 0.00 0.00 3.69
986 2748 3.531207 CGCTCCCGATCTGCCTCA 61.531 66.667 0.00 0.00 36.29 3.86
1243 3005 0.835941 CCTCCAGCAGCTCAAGGTAT 59.164 55.000 10.46 0.00 0.00 2.73
1296 3058 3.815401 GGACTTGCTCGCCATATGTATTT 59.185 43.478 1.24 0.00 0.00 1.40
1338 3100 4.998788 TGTACAATCAGGAGACAGAATCG 58.001 43.478 0.00 0.00 0.00 3.34
1347 3120 7.776933 TCAGGAGACAGAATCGATTTTATTG 57.223 36.000 12.81 10.90 0.00 1.90
1351 3124 8.454106 AGGAGACAGAATCGATTTTATTGTTTG 58.546 33.333 12.81 0.00 0.00 2.93
1372 3145 9.638239 TGTTTGAAATGAACTTCTAATTATGCC 57.362 29.630 0.00 0.00 0.00 4.40
1424 3198 3.525268 TGATAAGCATTGCTCTGTCGA 57.475 42.857 12.39 0.00 38.25 4.20
1434 3208 1.739562 CTCTGTCGAACAGCCCTGC 60.740 63.158 9.34 0.00 45.54 4.85
1454 3234 6.322201 CCCTGCACAATTCCAGAAACTTATAT 59.678 38.462 0.00 0.00 0.00 0.86
1480 3260 2.218530 CGGCAACAAAACTTGCTTAAGC 59.781 45.455 20.84 20.84 45.07 3.09
1482 3262 3.194062 GCAACAAAACTTGCTTAAGCCA 58.806 40.909 24.30 13.07 42.84 4.75
1536 3316 2.778299 TGGAAGGGATGAAGTTCAACG 58.222 47.619 10.14 0.00 0.00 4.10
1608 3400 9.456147 TTTGCTACTATTTCTTATGGTGCTTAA 57.544 29.630 0.00 0.00 0.00 1.85
1707 3499 7.972623 TTTCGTTCGTGTTGTTTTTATCATT 57.027 28.000 0.00 0.00 0.00 2.57
1708 3500 7.597643 TTCGTTCGTGTTGTTTTTATCATTC 57.402 32.000 0.00 0.00 0.00 2.67
1709 3501 6.716438 TCGTTCGTGTTGTTTTTATCATTCA 58.284 32.000 0.00 0.00 0.00 2.57
1710 3502 7.356540 TCGTTCGTGTTGTTTTTATCATTCAT 58.643 30.769 0.00 0.00 0.00 2.57
1754 3546 8.807581 GTGATATTTACAACTTAATGCCTTTGC 58.192 33.333 0.00 0.00 38.26 3.68
2113 4074 4.717877 TGTTGATTGCTATCGGATTGGAT 58.282 39.130 3.70 0.00 33.23 3.41
2461 4422 7.141363 ACAAACTAAAGATCATTGTGCTTGTC 58.859 34.615 0.00 0.00 33.29 3.18
2522 4483 7.340999 GGTAATTATGTGTTGGGACCTATTTGT 59.659 37.037 0.00 0.00 0.00 2.83
2592 4553 6.440328 AGGAATAACATGGCAAGTTTGGTTAT 59.560 34.615 13.77 7.58 34.05 1.89
2679 4648 1.135139 CTGTACCAGATCTCCACGTGG 59.865 57.143 29.26 29.26 32.44 4.94
2824 4793 8.539674 GTGTTTTGCTGTTAGGATTTTTAGTTG 58.460 33.333 0.00 0.00 0.00 3.16
2964 4943 4.387256 GCAAAATGCACAATTAACGCCTAA 59.613 37.500 0.00 0.00 44.26 2.69
3518 5499 3.156293 CACCATTGGTCATCTTGAACCA 58.844 45.455 5.04 0.00 31.76 3.67
4212 6193 5.531634 TGTCACAAGAAAATGGCTTTGATC 58.468 37.500 0.00 0.00 0.00 2.92
4465 6446 8.216423 AGATGGCTTGTTATTTCTGTATGAGAT 58.784 33.333 0.00 0.00 0.00 2.75
4736 6717 3.827008 TGCTTGACTCTCTCAGTTGTT 57.173 42.857 0.00 0.00 34.41 2.83
4870 6851 7.590689 GCAGCATTTCTTTTCTCTATTGCTATC 59.409 37.037 0.00 0.00 37.10 2.08
4936 6917 6.146673 GCATAGTTTGGTGTCGGTATATTACC 59.853 42.308 0.00 0.00 45.52 2.85
5020 7004 0.894141 AGCTGTTTGTGCCAACAACA 59.106 45.000 0.00 0.00 45.91 3.33
5021 7005 1.274728 AGCTGTTTGTGCCAACAACAA 59.725 42.857 0.00 0.00 45.91 2.83
5022 7006 1.393196 GCTGTTTGTGCCAACAACAAC 59.607 47.619 0.00 0.00 45.91 3.32
5139 7123 6.151144 CCTAAAACCCATGGTTCAGTAGAAAG 59.849 42.308 11.73 0.00 46.20 2.62
5202 7187 2.480416 CGAAGAGGAGGATGTGTAGCAC 60.480 54.545 0.00 0.00 34.56 4.40
5230 7215 7.148018 CCATTTTGTCCTAGTATGCTGATGTTT 60.148 37.037 0.00 0.00 0.00 2.83
5284 7269 6.349300 AGTGAAGCTTGAACTCACTTTAGAA 58.651 36.000 2.10 0.00 38.33 2.10
5472 7457 6.333416 TCAGTCTTTCATACTACAGACATGC 58.667 40.000 0.00 0.00 38.53 4.06
5496 7481 6.320171 CCTAACAGAATCACATGCTTTTGAG 58.680 40.000 0.00 0.00 0.00 3.02
5537 7522 4.526262 TCCAATAAAATTGGTGACCCAGTG 59.474 41.667 16.24 0.00 43.15 3.66
5553 7538 6.156083 TGACCCAGTGATATTTAGTGATGACA 59.844 38.462 0.00 0.00 0.00 3.58
5582 7567 6.824305 TTTCAGATTCTTGCTAAAGGGAAG 57.176 37.500 0.00 0.00 43.44 3.46
5700 7689 6.027749 GGAACGCATAATGAAACGAGATTTT 58.972 36.000 0.00 0.00 0.00 1.82
5809 7798 0.035152 CAGCATGCACCTTCACCCTA 60.035 55.000 21.98 0.00 0.00 3.53
6043 8032 0.396811 AGGGCGTAGTGAGCAAAACT 59.603 50.000 0.00 0.00 36.08 2.66
6211 8203 3.097877 TGTACTCAGTTGTGCTCACTG 57.902 47.619 10.29 10.29 0.00 3.66
6235 8227 4.765856 GCCTATTTGATCCATGCTCTGATT 59.234 41.667 0.00 0.00 0.00 2.57
6328 8320 1.181786 CTCGGAGTGAGCTTCTTCCT 58.818 55.000 0.00 0.00 38.03 3.36
6377 8370 3.117550 TGCCCTTATGTTGGACTGCATAT 60.118 43.478 0.00 0.00 0.00 1.78
6396 8389 9.608617 CTGCATATAGTTTCTTATGAATTGCAG 57.391 33.333 0.00 0.00 36.93 4.41
6526 8559 8.024285 CCGTTTTAGGTTACATATTGCTTTCAA 58.976 33.333 0.00 0.00 36.51 2.69
6562 8596 4.460382 TCTGGATTTGTCTTCATTTGAGCC 59.540 41.667 0.00 0.00 0.00 4.70
6572 8606 2.101783 TCATTTGAGCCGATTGCCATT 58.898 42.857 0.00 0.00 42.71 3.16
6574 8608 2.652941 TTTGAGCCGATTGCCATTTC 57.347 45.000 0.00 0.00 42.71 2.17
6623 8657 2.159338 TGGCGTCTCGTAGAAATGTACC 60.159 50.000 0.00 0.00 34.09 3.34
6626 8660 3.096461 CGTCTCGTAGAAATGTACCACG 58.904 50.000 0.00 0.00 34.09 4.94
6627 8661 3.425359 CGTCTCGTAGAAATGTACCACGT 60.425 47.826 0.00 0.00 34.09 4.49
6630 8664 2.159531 TCGTAGAAATGTACCACGTCCG 60.160 50.000 0.00 0.00 34.39 4.79
6668 8977 3.180613 GTCTTTGTAGGCTAGCGTCTTC 58.819 50.000 14.21 6.70 0.00 2.87
6669 8978 3.090037 TCTTTGTAGGCTAGCGTCTTCT 58.910 45.455 14.21 4.35 0.00 2.85
6670 8979 3.510360 TCTTTGTAGGCTAGCGTCTTCTT 59.490 43.478 14.21 0.00 0.00 2.52
6683 8992 7.010183 GCTAGCGTCTTCTTACATTTTGATACA 59.990 37.037 0.00 0.00 0.00 2.29
6688 8997 7.010552 CGTCTTCTTACATTTTGATACAGAGGG 59.989 40.741 0.00 0.00 0.00 4.30
6717 9511 5.319140 TGGTTTCTTGCATGATTCATCTG 57.681 39.130 2.75 0.00 0.00 2.90
6753 9547 2.543067 GAACTACTGCTGGCCCCAGG 62.543 65.000 20.70 9.41 43.77 4.45
6887 9685 2.749076 TGCATACACAACATCTTCAGCC 59.251 45.455 0.00 0.00 0.00 4.85
6921 9719 7.866393 TCAAGCTTTACACTAGACTGTAACTTC 59.134 37.037 0.00 0.00 36.55 3.01
6923 9721 5.572126 GCTTTACACTAGACTGTAACTTCGG 59.428 44.000 0.00 0.00 36.55 4.30
7000 9798 9.734620 GAGCACTATTCATACATAAAATTGCAA 57.265 29.630 0.00 0.00 0.00 4.08
7036 9834 9.681692 AAAATTAGCCTCAAAATTTGCAAAATC 57.318 25.926 17.19 0.00 35.89 2.17
7041 9839 5.236911 GCCTCAAAATTTGCAAAATCTGACA 59.763 36.000 17.19 0.00 0.00 3.58
7047 9845 1.246649 TGCAAAATCTGACACCGCAT 58.753 45.000 0.00 0.00 0.00 4.73
7051 9849 3.612479 GCAAAATCTGACACCGCATTTCT 60.612 43.478 0.00 0.00 0.00 2.52
7067 9865 3.859411 TTTCTCAAACTTGGCACGTTT 57.141 38.095 15.46 15.46 35.12 3.60
7069 9867 2.088423 TCTCAAACTTGGCACGTTTGT 58.912 42.857 34.24 11.36 46.84 2.83
7070 9868 2.159448 TCTCAAACTTGGCACGTTTGTG 60.159 45.455 34.24 32.08 46.84 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.258982 GATTATGCAACTCGCGGACAG 59.741 52.381 6.13 0.00 46.97 3.51
12 13 1.523095 GAGATTATGCAACTCGCGGAC 59.477 52.381 6.13 0.00 46.97 4.79
17 18 6.442112 TCTGACTATGAGATTATGCAACTCG 58.558 40.000 0.00 0.00 33.93 4.18
67 68 6.649141 TGATCGTTCAGTTTTATTGCTACTGT 59.351 34.615 0.00 0.00 40.08 3.55
73 74 7.645340 AGCATAATGATCGTTCAGTTTTATTGC 59.355 33.333 2.72 7.70 34.73 3.56
84 85 7.408132 TGTTAGCTTAGCATAATGATCGTTC 57.592 36.000 7.07 0.00 0.00 3.95
87 88 7.747799 CCATTTGTTAGCTTAGCATAATGATCG 59.252 37.037 7.07 0.00 0.00 3.69
96 97 4.301072 AGACCCATTTGTTAGCTTAGCA 57.699 40.909 7.07 0.00 0.00 3.49
108 109 3.524095 TGTGATGGACAAGACCCATTT 57.476 42.857 0.00 0.00 43.96 2.32
109 110 3.010472 TGATGTGATGGACAAGACCCATT 59.990 43.478 0.00 0.00 43.96 3.16
142 143 6.372381 TGTCATTTGATGAACGAGATCACATT 59.628 34.615 0.00 0.00 41.69 2.71
151 152 5.008514 ACATGTGTTGTCATTTGATGAACGA 59.991 36.000 0.00 0.00 41.69 3.85
165 166 3.523157 TCCTATCCATGGACATGTGTTGT 59.477 43.478 18.99 0.00 42.79 3.32
166 167 4.155063 TCCTATCCATGGACATGTGTTG 57.845 45.455 18.99 0.56 37.11 3.33
167 168 4.860802 TTCCTATCCATGGACATGTGTT 57.139 40.909 18.99 1.07 37.11 3.32
168 169 4.228210 AGTTTCCTATCCATGGACATGTGT 59.772 41.667 18.99 1.93 37.11 3.72
169 170 4.785301 AGTTTCCTATCCATGGACATGTG 58.215 43.478 18.99 4.40 37.11 3.21
170 171 5.456921 AAGTTTCCTATCCATGGACATGT 57.543 39.130 18.99 3.24 37.11 3.21
171 172 6.263168 GGTTAAGTTTCCTATCCATGGACATG 59.737 42.308 18.99 9.97 38.51 3.21
172 173 6.069088 TGGTTAAGTTTCCTATCCATGGACAT 60.069 38.462 18.99 4.55 32.65 3.06
173 174 5.251932 TGGTTAAGTTTCCTATCCATGGACA 59.748 40.000 18.99 3.90 32.65 4.02
174 175 5.751586 TGGTTAAGTTTCCTATCCATGGAC 58.248 41.667 18.99 2.52 32.65 4.02
175 176 6.590656 ATGGTTAAGTTTCCTATCCATGGA 57.409 37.500 18.88 18.88 33.70 3.41
176 177 7.660030 AAATGGTTAAGTTTCCTATCCATGG 57.340 36.000 4.97 4.97 34.93 3.66
177 178 9.369904 CAAAAATGGTTAAGTTTCCTATCCATG 57.630 33.333 0.00 0.00 34.93 3.66
178 179 9.320295 TCAAAAATGGTTAAGTTTCCTATCCAT 57.680 29.630 0.00 0.00 36.01 3.41
179 180 8.713708 TCAAAAATGGTTAAGTTTCCTATCCA 57.286 30.769 0.00 0.00 0.00 3.41
184 185 9.471084 CGTTTATCAAAAATGGTTAAGTTTCCT 57.529 29.630 0.00 0.00 0.00 3.36
185 186 9.465985 TCGTTTATCAAAAATGGTTAAGTTTCC 57.534 29.630 0.00 0.00 0.00 3.13
187 188 8.974408 GCTCGTTTATCAAAAATGGTTAAGTTT 58.026 29.630 0.00 0.00 0.00 2.66
188 189 8.357402 AGCTCGTTTATCAAAAATGGTTAAGTT 58.643 29.630 0.00 0.00 0.00 2.66
189 190 7.882179 AGCTCGTTTATCAAAAATGGTTAAGT 58.118 30.769 0.00 0.00 0.00 2.24
190 191 9.490663 CTAGCTCGTTTATCAAAAATGGTTAAG 57.509 33.333 0.00 0.00 0.00 1.85
191 192 9.005777 ACTAGCTCGTTTATCAAAAATGGTTAA 57.994 29.630 0.00 0.00 0.00 2.01
192 193 8.447833 CACTAGCTCGTTTATCAAAAATGGTTA 58.552 33.333 0.00 0.00 0.00 2.85
193 194 7.174253 TCACTAGCTCGTTTATCAAAAATGGTT 59.826 33.333 0.00 0.00 0.00 3.67
194 195 6.653320 TCACTAGCTCGTTTATCAAAAATGGT 59.347 34.615 0.00 0.00 0.00 3.55
195 196 7.072177 TCACTAGCTCGTTTATCAAAAATGG 57.928 36.000 0.00 0.00 0.00 3.16
196 197 8.230486 ACTTCACTAGCTCGTTTATCAAAAATG 58.770 33.333 0.00 0.00 0.00 2.32
197 198 8.324163 ACTTCACTAGCTCGTTTATCAAAAAT 57.676 30.769 0.00 0.00 0.00 1.82
198 199 7.724305 ACTTCACTAGCTCGTTTATCAAAAA 57.276 32.000 0.00 0.00 0.00 1.94
199 200 8.301720 TCTACTTCACTAGCTCGTTTATCAAAA 58.698 33.333 0.00 0.00 0.00 2.44
200 201 7.823665 TCTACTTCACTAGCTCGTTTATCAAA 58.176 34.615 0.00 0.00 0.00 2.69
201 202 7.387119 TCTACTTCACTAGCTCGTTTATCAA 57.613 36.000 0.00 0.00 0.00 2.57
202 203 6.038382 CCTCTACTTCACTAGCTCGTTTATCA 59.962 42.308 0.00 0.00 0.00 2.15
203 204 6.432107 CCTCTACTTCACTAGCTCGTTTATC 58.568 44.000 0.00 0.00 0.00 1.75
204 205 5.221087 GCCTCTACTTCACTAGCTCGTTTAT 60.221 44.000 0.00 0.00 0.00 1.40
205 206 4.096081 GCCTCTACTTCACTAGCTCGTTTA 59.904 45.833 0.00 0.00 0.00 2.01
206 207 3.119424 GCCTCTACTTCACTAGCTCGTTT 60.119 47.826 0.00 0.00 0.00 3.60
207 208 2.424246 GCCTCTACTTCACTAGCTCGTT 59.576 50.000 0.00 0.00 0.00 3.85
208 209 2.018515 GCCTCTACTTCACTAGCTCGT 58.981 52.381 0.00 0.00 0.00 4.18
209 210 2.017782 TGCCTCTACTTCACTAGCTCG 58.982 52.381 0.00 0.00 0.00 5.03
210 211 4.825085 AGTATGCCTCTACTTCACTAGCTC 59.175 45.833 0.00 0.00 0.00 4.09
211 212 4.798882 AGTATGCCTCTACTTCACTAGCT 58.201 43.478 0.00 0.00 0.00 3.32
212 213 5.182380 CCTAGTATGCCTCTACTTCACTAGC 59.818 48.000 0.00 0.00 35.02 3.42
213 214 5.708230 CCCTAGTATGCCTCTACTTCACTAG 59.292 48.000 0.00 0.00 35.74 2.57
214 215 5.371769 TCCCTAGTATGCCTCTACTTCACTA 59.628 44.000 0.00 0.00 33.96 2.74
215 216 4.168283 TCCCTAGTATGCCTCTACTTCACT 59.832 45.833 0.00 0.00 33.96 3.41
216 217 4.278919 GTCCCTAGTATGCCTCTACTTCAC 59.721 50.000 0.00 0.00 33.96 3.18
217 218 4.079385 TGTCCCTAGTATGCCTCTACTTCA 60.079 45.833 0.00 0.00 33.96 3.02
218 219 4.278919 GTGTCCCTAGTATGCCTCTACTTC 59.721 50.000 0.00 0.00 33.96 3.01
219 220 4.216708 GTGTCCCTAGTATGCCTCTACTT 58.783 47.826 0.00 0.00 33.96 2.24
220 221 3.748027 CGTGTCCCTAGTATGCCTCTACT 60.748 52.174 0.00 0.00 36.04 2.57
221 222 2.553172 CGTGTCCCTAGTATGCCTCTAC 59.447 54.545 0.00 0.00 0.00 2.59
222 223 2.440627 TCGTGTCCCTAGTATGCCTCTA 59.559 50.000 0.00 0.00 0.00 2.43
223 224 1.214673 TCGTGTCCCTAGTATGCCTCT 59.785 52.381 0.00 0.00 0.00 3.69
224 225 1.688772 TCGTGTCCCTAGTATGCCTC 58.311 55.000 0.00 0.00 0.00 4.70
225 226 2.383442 ATCGTGTCCCTAGTATGCCT 57.617 50.000 0.00 0.00 0.00 4.75
226 227 4.803098 AATATCGTGTCCCTAGTATGCC 57.197 45.455 0.00 0.00 0.00 4.40
227 228 5.989777 ACAAAATATCGTGTCCCTAGTATGC 59.010 40.000 0.00 0.00 0.00 3.14
228 229 7.434492 AGACAAAATATCGTGTCCCTAGTATG 58.566 38.462 12.75 0.00 44.30 2.39
229 230 7.598759 AGACAAAATATCGTGTCCCTAGTAT 57.401 36.000 12.75 0.00 44.30 2.12
230 231 8.573885 CATAGACAAAATATCGTGTCCCTAGTA 58.426 37.037 12.75 2.75 44.30 1.82
231 232 5.934402 AGACAAAATATCGTGTCCCTAGT 57.066 39.130 12.75 0.00 44.30 2.57
232 233 7.434492 ACATAGACAAAATATCGTGTCCCTAG 58.566 38.462 12.75 6.09 44.30 3.02
233 234 7.356089 ACATAGACAAAATATCGTGTCCCTA 57.644 36.000 12.75 3.81 44.30 3.53
234 235 6.235231 ACATAGACAAAATATCGTGTCCCT 57.765 37.500 12.75 2.12 44.30 4.20
235 236 8.603242 AATACATAGACAAAATATCGTGTCCC 57.397 34.615 12.75 0.00 44.30 4.46
236 237 9.256477 TGAATACATAGACAAAATATCGTGTCC 57.744 33.333 12.75 0.40 44.30 4.02
238 239 9.594478 TGTGAATACATAGACAAAATATCGTGT 57.406 29.630 0.00 0.00 0.00 4.49
239 240 9.849607 GTGTGAATACATAGACAAAATATCGTG 57.150 33.333 0.00 0.00 39.39 4.35
240 241 9.594478 TGTGTGAATACATAGACAAAATATCGT 57.406 29.630 0.00 0.00 39.39 3.73
241 242 9.849607 GTGTGTGAATACATAGACAAAATATCG 57.150 33.333 0.00 0.00 39.39 2.92
242 243 9.849607 CGTGTGTGAATACATAGACAAAATATC 57.150 33.333 0.00 0.00 39.39 1.63
243 244 9.378551 ACGTGTGTGAATACATAGACAAAATAT 57.621 29.630 0.00 0.00 39.39 1.28
244 245 8.766000 ACGTGTGTGAATACATAGACAAAATA 57.234 30.769 0.00 0.00 39.39 1.40
245 246 7.667043 ACGTGTGTGAATACATAGACAAAAT 57.333 32.000 0.00 0.00 39.39 1.82
246 247 8.590719 TTACGTGTGTGAATACATAGACAAAA 57.409 30.769 0.00 0.00 39.39 2.44
247 248 7.868922 ACTTACGTGTGTGAATACATAGACAAA 59.131 33.333 0.00 0.00 39.39 2.83
248 249 7.372714 ACTTACGTGTGTGAATACATAGACAA 58.627 34.615 0.00 0.00 39.39 3.18
249 250 6.916440 ACTTACGTGTGTGAATACATAGACA 58.084 36.000 0.00 0.00 39.39 3.41
250 251 7.807687 AACTTACGTGTGTGAATACATAGAC 57.192 36.000 0.00 0.00 39.39 2.59
251 252 8.821147 AAAACTTACGTGTGTGAATACATAGA 57.179 30.769 0.00 0.00 39.39 1.98
252 253 7.891220 CGAAAACTTACGTGTGTGAATACATAG 59.109 37.037 0.00 0.00 39.39 2.23
253 254 7.148771 CCGAAAACTTACGTGTGTGAATACATA 60.149 37.037 0.00 0.00 39.39 2.29
254 255 6.347079 CCGAAAACTTACGTGTGTGAATACAT 60.347 38.462 0.00 0.00 39.39 2.29
255 256 5.050904 CCGAAAACTTACGTGTGTGAATACA 60.051 40.000 0.00 0.00 0.00 2.29
256 257 5.050837 ACCGAAAACTTACGTGTGTGAATAC 60.051 40.000 0.00 0.00 0.00 1.89
257 258 5.049167 ACCGAAAACTTACGTGTGTGAATA 58.951 37.500 0.00 0.00 0.00 1.75
258 259 3.872771 ACCGAAAACTTACGTGTGTGAAT 59.127 39.130 0.00 0.00 0.00 2.57
259 260 3.260740 ACCGAAAACTTACGTGTGTGAA 58.739 40.909 0.00 0.00 0.00 3.18
260 261 2.891112 ACCGAAAACTTACGTGTGTGA 58.109 42.857 0.00 0.00 0.00 3.58
261 262 3.661758 AACCGAAAACTTACGTGTGTG 57.338 42.857 0.00 0.00 0.00 3.82
262 263 5.989551 ATTAACCGAAAACTTACGTGTGT 57.010 34.783 0.00 0.00 0.00 3.72
263 264 6.875753 TGTATTAACCGAAAACTTACGTGTG 58.124 36.000 0.00 0.00 0.00 3.82
264 265 7.475771 TTGTATTAACCGAAAACTTACGTGT 57.524 32.000 0.00 0.00 0.00 4.49
265 266 8.938047 AATTGTATTAACCGAAAACTTACGTG 57.062 30.769 0.00 0.00 0.00 4.49
341 342 9.474313 TGCCCTAGAGACAATAATAAATTTGTT 57.526 29.630 5.47 5.47 36.25 2.83
342 343 8.903820 GTGCCCTAGAGACAATAATAAATTTGT 58.096 33.333 0.00 0.00 38.71 2.83
343 344 8.902806 TGTGCCCTAGAGACAATAATAAATTTG 58.097 33.333 0.00 0.00 0.00 2.32
344 345 9.646522 ATGTGCCCTAGAGACAATAATAAATTT 57.353 29.630 0.00 0.00 0.00 1.82
345 346 9.646522 AATGTGCCCTAGAGACAATAATAAATT 57.353 29.630 0.00 0.00 0.00 1.82
346 347 9.646522 AAATGTGCCCTAGAGACAATAATAAAT 57.353 29.630 0.00 0.00 0.00 1.40
347 348 9.120538 GAAATGTGCCCTAGAGACAATAATAAA 57.879 33.333 0.00 0.00 0.00 1.40
348 349 7.719633 GGAAATGTGCCCTAGAGACAATAATAA 59.280 37.037 0.00 0.00 0.00 1.40
349 350 7.072454 AGGAAATGTGCCCTAGAGACAATAATA 59.928 37.037 0.00 0.00 0.00 0.98
350 351 6.064717 GGAAATGTGCCCTAGAGACAATAAT 58.935 40.000 0.00 0.00 0.00 1.28
351 352 5.191722 AGGAAATGTGCCCTAGAGACAATAA 59.808 40.000 0.00 0.00 0.00 1.40
352 353 4.721776 AGGAAATGTGCCCTAGAGACAATA 59.278 41.667 0.00 0.00 0.00 1.90
353 354 3.525199 AGGAAATGTGCCCTAGAGACAAT 59.475 43.478 0.00 0.00 0.00 2.71
354 355 2.912956 AGGAAATGTGCCCTAGAGACAA 59.087 45.455 0.00 0.00 0.00 3.18
355 356 2.551270 AGGAAATGTGCCCTAGAGACA 58.449 47.619 0.00 0.00 0.00 3.41
356 357 3.055094 TGAAGGAAATGTGCCCTAGAGAC 60.055 47.826 0.00 0.00 31.36 3.36
357 358 3.181329 TGAAGGAAATGTGCCCTAGAGA 58.819 45.455 0.00 0.00 31.36 3.10
358 359 3.054802 ACTGAAGGAAATGTGCCCTAGAG 60.055 47.826 0.00 0.00 31.36 2.43
359 360 2.912956 ACTGAAGGAAATGTGCCCTAGA 59.087 45.455 0.00 0.00 31.36 2.43
360 361 3.356529 ACTGAAGGAAATGTGCCCTAG 57.643 47.619 0.00 0.00 31.36 3.02
361 362 3.686016 GAACTGAAGGAAATGTGCCCTA 58.314 45.455 0.00 0.00 31.36 3.53
362 363 2.519013 GAACTGAAGGAAATGTGCCCT 58.481 47.619 0.00 0.00 0.00 5.19
363 364 1.200020 CGAACTGAAGGAAATGTGCCC 59.800 52.381 0.00 0.00 0.00 5.36
364 365 1.401539 GCGAACTGAAGGAAATGTGCC 60.402 52.381 0.00 0.00 0.00 5.01
365 366 1.725931 CGCGAACTGAAGGAAATGTGC 60.726 52.381 0.00 0.00 0.00 4.57
366 367 1.135972 CCGCGAACTGAAGGAAATGTG 60.136 52.381 8.23 0.00 0.00 3.21
367 368 1.156736 CCGCGAACTGAAGGAAATGT 58.843 50.000 8.23 0.00 0.00 2.71
368 369 0.179189 GCCGCGAACTGAAGGAAATG 60.179 55.000 8.23 0.00 0.00 2.32
369 370 0.605319 TGCCGCGAACTGAAGGAAAT 60.605 50.000 8.23 0.00 0.00 2.17
370 371 0.605319 ATGCCGCGAACTGAAGGAAA 60.605 50.000 8.23 0.00 0.00 3.13
371 372 0.605319 AATGCCGCGAACTGAAGGAA 60.605 50.000 8.23 0.00 0.00 3.36
372 373 1.003839 AATGCCGCGAACTGAAGGA 60.004 52.632 8.23 0.00 0.00 3.36
373 374 1.135315 CAATGCCGCGAACTGAAGG 59.865 57.895 8.23 0.00 0.00 3.46
374 375 1.512734 GCAATGCCGCGAACTGAAG 60.513 57.895 8.23 0.00 0.00 3.02
375 376 2.257302 TGCAATGCCGCGAACTGAA 61.257 52.632 8.23 0.00 33.35 3.02
376 377 2.667874 TGCAATGCCGCGAACTGA 60.668 55.556 8.23 0.00 33.35 3.41
377 378 2.502510 GTGCAATGCCGCGAACTG 60.503 61.111 8.23 0.00 33.35 3.16
378 379 4.088762 CGTGCAATGCCGCGAACT 62.089 61.111 8.23 0.00 33.35 3.01
379 380 3.587342 TTCGTGCAATGCCGCGAAC 62.587 57.895 23.22 6.60 38.89 3.95
380 381 3.307505 CTTCGTGCAATGCCGCGAA 62.308 57.895 24.56 24.56 40.39 4.70
381 382 3.787676 CTTCGTGCAATGCCGCGA 61.788 61.111 8.23 15.62 34.46 5.87
382 383 3.787676 TCTTCGTGCAATGCCGCG 61.788 61.111 1.53 7.89 33.35 6.46
383 384 2.187599 AAGTCTTCGTGCAATGCCGC 62.188 55.000 1.53 0.00 0.00 6.53
384 385 0.179215 GAAGTCTTCGTGCAATGCCG 60.179 55.000 1.53 6.26 0.00 5.69
385 386 0.169009 GGAAGTCTTCGTGCAATGCC 59.831 55.000 1.53 0.00 0.00 4.40
386 387 0.169009 GGGAAGTCTTCGTGCAATGC 59.831 55.000 6.50 0.00 0.00 3.56
387 388 0.443869 CGGGAAGTCTTCGTGCAATG 59.556 55.000 6.50 0.00 0.00 2.82
388 389 0.034896 ACGGGAAGTCTTCGTGCAAT 59.965 50.000 6.50 0.00 35.70 3.56
389 390 0.179067 AACGGGAAGTCTTCGTGCAA 60.179 50.000 6.50 0.00 37.20 4.08
398 399 0.857287 GTCAACGACAACGGGAAGTC 59.143 55.000 0.00 0.00 44.46 3.01
405 406 1.257936 CCTGACTTGTCAACGACAACG 59.742 52.381 5.47 5.42 45.88 4.10
406 407 1.003866 GCCTGACTTGTCAACGACAAC 60.004 52.381 5.47 0.00 45.88 3.32
409 410 1.557443 CGGCCTGACTTGTCAACGAC 61.557 60.000 0.00 5.27 0.00 4.34
410 411 1.300620 CGGCCTGACTTGTCAACGA 60.301 57.895 0.00 0.00 0.00 3.85
411 412 2.317609 CCGGCCTGACTTGTCAACG 61.318 63.158 0.00 9.28 0.00 4.10
412 413 2.617274 GCCGGCCTGACTTGTCAAC 61.617 63.158 18.11 0.70 0.00 3.18
413 414 2.281484 GCCGGCCTGACTTGTCAA 60.281 61.111 18.11 0.00 0.00 3.18
414 415 3.240134 GAGCCGGCCTGACTTGTCA 62.240 63.158 26.15 3.32 0.00 3.58
433 435 2.962253 GTCGCTGCTCGCATACCC 60.962 66.667 0.00 0.00 39.08 3.69
455 457 4.903010 AACGAGTTGCCGGTGCGT 62.903 61.111 1.90 3.23 41.78 5.24
459 461 1.300697 GTCAGAACGAGTTGCCGGT 60.301 57.895 1.90 0.00 0.00 5.28
460 462 3.550656 GTCAGAACGAGTTGCCGG 58.449 61.111 0.00 0.00 0.00 6.13
479 481 0.025001 CACCGAACGATCATTGTCGC 59.975 55.000 0.00 0.00 45.12 5.19
488 490 0.611200 TTCATGGACCACCGAACGAT 59.389 50.000 0.00 0.00 39.42 3.73
529 531 5.435291 TCGGAGGTACAAAACACCTTAAAA 58.565 37.500 0.00 0.00 46.60 1.52
532 534 4.283978 TCATCGGAGGTACAAAACACCTTA 59.716 41.667 0.00 0.00 46.60 2.69
636 640 5.874810 TCCGGATTCACTGTTTTATCTGAAG 59.125 40.000 0.00 0.00 0.00 3.02
638 642 5.046591 AGTCCGGATTCACTGTTTTATCTGA 60.047 40.000 7.81 0.00 0.00 3.27
875 2635 3.729906 CTTCGGTCGCTCGGGTACG 62.730 68.421 0.00 0.00 42.74 3.67
876 2636 2.101770 CTTCGGTCGCTCGGGTAC 59.898 66.667 0.00 0.00 0.00 3.34
877 2637 3.136123 CCTTCGGTCGCTCGGGTA 61.136 66.667 0.00 0.00 0.00 3.69
1243 3005 0.108774 TGCGTTTCCATGGGTGTACA 59.891 50.000 13.02 2.62 0.00 2.90
1296 3058 5.999205 ACAGGACCAATATTGCAAATTCA 57.001 34.783 10.11 0.00 0.00 2.57
1347 3120 9.860898 AGGCATAATTAGAAGTTCATTTCAAAC 57.139 29.630 5.50 0.00 0.00 2.93
1424 3198 0.469705 TGGAATTGTGCAGGGCTGTT 60.470 50.000 0.00 0.00 0.00 3.16
1434 3208 9.655769 CGAATCATATAAGTTTCTGGAATTGTG 57.344 33.333 0.00 0.00 0.00 3.33
1454 3234 2.468831 GCAAGTTTTGTTGCCGAATCA 58.531 42.857 0.00 0.00 46.00 2.57
1480 3260 0.608130 TGTGGTCCGAACTCTGATGG 59.392 55.000 0.00 0.00 0.00 3.51
1482 3262 2.461695 AGATGTGGTCCGAACTCTGAT 58.538 47.619 0.00 0.00 0.00 2.90
1536 3316 9.758651 GTTATTGGATAATGGTAACCCAATTTC 57.241 33.333 9.79 1.98 46.04 2.17
1630 3422 3.281158 AGAGAAACCGAGGTAGAGTAGC 58.719 50.000 0.00 0.00 0.00 3.58
2045 4006 8.674263 AAAACCAAAAATGATGTAATCTGCAA 57.326 26.923 0.00 0.00 45.81 4.08
2443 4404 5.014858 AGATGGACAAGCACAATGATCTTT 58.985 37.500 0.00 0.00 0.00 2.52
2444 4405 4.398358 CAGATGGACAAGCACAATGATCTT 59.602 41.667 0.00 0.00 0.00 2.40
2446 4407 3.693085 ACAGATGGACAAGCACAATGATC 59.307 43.478 0.00 0.00 0.00 2.92
2461 4422 7.599621 TGAAGAAATAAATGCACAAACAGATGG 59.400 33.333 0.00 0.00 0.00 3.51
2592 4553 2.766263 CCTATGAGACTAACAGGTGGCA 59.234 50.000 0.00 0.00 0.00 4.92
2679 4648 6.278363 TGTGGACTTAGTTAGTTTCAGTGAC 58.722 40.000 0.00 0.00 37.17 3.67
2796 4765 6.902224 AAAAATCCTAACAGCAAAACACAC 57.098 33.333 0.00 0.00 0.00 3.82
2824 4793 0.171231 CGCCTAGGCTTGCCTTTTTC 59.829 55.000 30.55 6.21 39.32 2.29
4212 6193 9.846248 CCCTTTTCTTTCTTTACTATTGTGATG 57.154 33.333 0.00 0.00 0.00 3.07
4736 6717 4.941263 AGTTTGCGAGCAATGTAATCCTTA 59.059 37.500 11.53 0.00 35.70 2.69
4870 6851 7.970614 GCCTAAAGATTGTAAAAGATGTTGAGG 59.029 37.037 0.00 0.00 32.68 3.86
4936 6917 8.677300 ACAGCACATTTAGTTATCCTTTACATG 58.323 33.333 0.00 0.00 0.00 3.21
5020 7004 6.705863 AATTTCAGTCAAAGCTTCAGAGTT 57.294 33.333 0.00 0.00 0.00 3.01
5021 7005 6.096001 ACAAATTTCAGTCAAAGCTTCAGAGT 59.904 34.615 0.00 1.06 0.00 3.24
5022 7006 6.501781 ACAAATTTCAGTCAAAGCTTCAGAG 58.498 36.000 0.00 0.00 0.00 3.35
5162 7147 5.529430 TCTTCGCAAAGAAAACTTGATACCA 59.471 36.000 0.00 0.00 38.58 3.25
5202 7187 3.002656 CAGCATACTAGGACAAAATGGCG 59.997 47.826 0.00 0.00 0.00 5.69
5230 7215 4.650734 TGGTATGCAGAAGTCAATTGTCA 58.349 39.130 5.13 0.00 0.00 3.58
5296 7281 8.702438 GTGCATGATAATTATGTTTATGCCAAC 58.298 33.333 19.89 13.63 38.82 3.77
5368 7353 0.909623 ATGTTACCCTCCCAAGTCCG 59.090 55.000 0.00 0.00 0.00 4.79
5472 7457 6.149973 TCTCAAAAGCATGTGATTCTGTTAGG 59.850 38.462 0.00 0.00 0.00 2.69
5669 7658 4.335082 TTCATTATGCGTTCCTCGTTTG 57.665 40.909 0.00 0.00 42.13 2.93
5674 7663 3.863424 TCTCGTTTCATTATGCGTTCCTC 59.137 43.478 0.00 0.00 0.00 3.71
5700 7689 5.306937 TCTGTCTCTTCCTGTATGAACCAAA 59.693 40.000 0.00 0.00 0.00 3.28
5703 7692 5.407407 TTCTGTCTCTTCCTGTATGAACC 57.593 43.478 0.00 0.00 0.00 3.62
5707 7696 7.270779 TCATCAATTCTGTCTCTTCCTGTATG 58.729 38.462 0.00 0.00 0.00 2.39
5809 7798 3.265221 TGAAATGGACAGCAGGAAGATCT 59.735 43.478 0.00 0.00 0.00 2.75
6043 8032 3.013921 GGCATTTTCAGGTGGAATCGTA 58.986 45.455 0.00 0.00 34.91 3.43
6211 8203 2.818432 CAGAGCATGGATCAAATAGGCC 59.182 50.000 0.00 0.00 0.00 5.19
6289 8281 1.094785 CAACCTATTTCCAGCACCCG 58.905 55.000 0.00 0.00 0.00 5.28
6328 8320 4.279671 ACCGAATAACCAAACTCAAATGCA 59.720 37.500 0.00 0.00 0.00 3.96
6396 8389 7.703298 AAAATCCGGCTTTAACACTTAAAAC 57.297 32.000 3.25 0.00 34.93 2.43
6562 8596 3.181508 GCCCAAATTTGAAATGGCAATCG 60.182 43.478 23.39 4.17 38.73 3.34
6572 8606 7.594714 CAAATGAATGAATGCCCAAATTTGAA 58.405 30.769 19.86 5.29 36.39 2.69
6574 8608 5.802956 GCAAATGAATGAATGCCCAAATTTG 59.197 36.000 11.40 11.40 37.02 2.32
6623 8657 3.619483 TCTTATATTTTGGTGCGGACGTG 59.381 43.478 0.00 0.00 0.00 4.49
6626 8660 3.619929 ACGTCTTATATTTTGGTGCGGAC 59.380 43.478 0.00 0.00 0.00 4.79
6627 8661 3.864243 ACGTCTTATATTTTGGTGCGGA 58.136 40.909 0.00 0.00 0.00 5.54
6630 8664 6.608610 ACAAAGACGTCTTATATTTTGGTGC 58.391 36.000 29.91 0.00 34.61 5.01
6668 8977 9.838339 ACTATTCCCTCTGTATCAAAATGTAAG 57.162 33.333 0.00 0.00 0.00 2.34
6670 8979 9.613428 CAACTATTCCCTCTGTATCAAAATGTA 57.387 33.333 0.00 0.00 0.00 2.29
6683 8992 4.202567 TGCAAGAAACCAACTATTCCCTCT 60.203 41.667 0.00 0.00 0.00 3.69
6688 8997 7.315142 TGAATCATGCAAGAAACCAACTATTC 58.685 34.615 0.00 0.00 0.00 1.75
6717 9511 1.032014 TTCAAGCTTGCAGGTGGTTC 58.968 50.000 21.99 0.00 0.00 3.62
6788 9582 5.754406 CCATTCTCTCTTTCTGTAGATGCAG 59.246 44.000 0.00 0.00 37.81 4.41
6887 9685 9.209175 AGTCTAGTGTAAAGCTTGAATGTTTAG 57.791 33.333 0.00 0.00 0.00 1.85
6931 9729 3.131396 CGCCGATGCTATTACCTCTTTT 58.869 45.455 0.00 0.00 34.43 2.27
7010 9808 9.681692 GATTTTGCAAATTTTGAGGCTAATTTT 57.318 25.926 13.65 0.00 33.04 1.82
7011 9809 9.070179 AGATTTTGCAAATTTTGAGGCTAATTT 57.930 25.926 13.65 1.52 35.05 1.82
7012 9810 8.508875 CAGATTTTGCAAATTTTGAGGCTAATT 58.491 29.630 13.65 0.00 0.00 1.40
7013 9811 7.879160 TCAGATTTTGCAAATTTTGAGGCTAAT 59.121 29.630 18.18 4.27 0.00 1.73
7025 9823 2.035704 TGCGGTGTCAGATTTTGCAAAT 59.964 40.909 13.65 3.23 0.00 2.32
7026 9824 1.406898 TGCGGTGTCAGATTTTGCAAA 59.593 42.857 8.05 8.05 0.00 3.68
7036 9834 2.549754 AGTTTGAGAAATGCGGTGTCAG 59.450 45.455 0.00 0.00 0.00 3.51
7041 9839 1.000274 GCCAAGTTTGAGAAATGCGGT 60.000 47.619 0.00 0.00 0.00 5.68
7047 9845 3.859411 AAACGTGCCAAGTTTGAGAAA 57.141 38.095 7.96 0.00 39.96 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.