Multiple sequence alignment - TraesCS2B01G298800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G298800 chr2B 100.000 3687 0 0 1 3687 418775187 418778873 0.000000e+00 6809.0
1 TraesCS2B01G298800 chr2B 100.000 30 0 0 3577 3606 125221582 125221553 5.140000e-04 56.5
2 TraesCS2B01G298800 chr2A 97.391 2568 44 12 786 3337 470430492 470433052 0.000000e+00 4349.0
3 TraesCS2B01G298800 chr2D 96.694 2571 45 15 786 3338 352624435 352626983 0.000000e+00 4241.0
4 TraesCS2B01G298800 chr2D 85.294 102 14 1 305 406 146540505 146540605 1.810000e-18 104.0
5 TraesCS2B01G298800 chr2D 85.294 102 14 1 305 406 146864952 146865052 1.810000e-18 104.0
6 TraesCS2B01G298800 chr6D 87.482 703 61 18 14 697 469377628 469378322 0.000000e+00 785.0
7 TraesCS2B01G298800 chr1A 85.596 722 63 25 1 697 278158636 278159341 0.000000e+00 719.0
8 TraesCS2B01G298800 chr1A 82.941 680 74 22 4 662 560843662 560843004 3.190000e-160 575.0
9 TraesCS2B01G298800 chr1A 100.000 30 0 0 3578 3607 580738328 580738299 5.140000e-04 56.5
10 TraesCS2B01G298800 chr3D 83.702 724 88 23 4 703 499630168 499629451 0.000000e+00 656.0
11 TraesCS2B01G298800 chr3D 83.807 704 85 18 14 697 155686303 155686997 3.100000e-180 641.0
12 TraesCS2B01G298800 chr3D 100.000 30 0 0 3577 3606 465788047 465788018 5.140000e-04 56.5
13 TraesCS2B01G298800 chr7A 83.217 715 81 17 4 697 109763359 109762663 1.450000e-173 619.0
14 TraesCS2B01G298800 chr7A 96.429 56 2 0 3473 3528 728025485 728025430 3.920000e-15 93.5
15 TraesCS2B01G298800 chr7D 76.879 346 46 18 256 573 477640232 477640571 8.190000e-37 165.0
16 TraesCS2B01G298800 chr7D 94.872 39 1 1 3576 3613 615958844 615958882 3.980000e-05 60.2
17 TraesCS2B01G298800 chrUn 98.182 55 1 0 3473 3527 62344957 62345011 3.030000e-16 97.1
18 TraesCS2B01G298800 chrUn 98.182 55 1 0 3473 3527 62461998 62462052 3.030000e-16 97.1
19 TraesCS2B01G298800 chrUn 98.182 55 1 0 3473 3527 62534010 62534064 3.030000e-16 97.1
20 TraesCS2B01G298800 chrUn 98.182 55 1 0 3473 3527 62590422 62590476 3.030000e-16 97.1
21 TraesCS2B01G298800 chrUn 92.308 65 4 1 3473 3537 224653340 224653403 1.410000e-14 91.6
22 TraesCS2B01G298800 chrUn 92.188 64 4 1 3473 3535 94847025 94846962 5.070000e-14 89.8
23 TraesCS2B01G298800 chr6A 98.182 55 1 0 3473 3527 4286753 4286699 3.030000e-16 97.1
24 TraesCS2B01G298800 chr6A 98.182 55 1 0 3473 3527 4357352 4357298 3.030000e-16 97.1
25 TraesCS2B01G298800 chr6A 100.000 30 0 0 3577 3606 530114436 530114465 5.140000e-04 56.5
26 TraesCS2B01G298800 chr4A 100.000 31 0 0 3577 3607 603408721 603408751 1.430000e-04 58.4
27 TraesCS2B01G298800 chr3B 100.000 30 0 0 3577 3606 17611548 17611577 5.140000e-04 56.5
28 TraesCS2B01G298800 chr1B 100.000 30 0 0 3577 3606 270840200 270840229 5.140000e-04 56.5
29 TraesCS2B01G298800 chr1B 100.000 30 0 0 3577 3606 270840265 270840236 5.140000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G298800 chr2B 418775187 418778873 3686 False 6809 6809 100.000 1 3687 1 chr2B.!!$F1 3686
1 TraesCS2B01G298800 chr2A 470430492 470433052 2560 False 4349 4349 97.391 786 3337 1 chr2A.!!$F1 2551
2 TraesCS2B01G298800 chr2D 352624435 352626983 2548 False 4241 4241 96.694 786 3338 1 chr2D.!!$F3 2552
3 TraesCS2B01G298800 chr6D 469377628 469378322 694 False 785 785 87.482 14 697 1 chr6D.!!$F1 683
4 TraesCS2B01G298800 chr1A 278158636 278159341 705 False 719 719 85.596 1 697 1 chr1A.!!$F1 696
5 TraesCS2B01G298800 chr1A 560843004 560843662 658 True 575 575 82.941 4 662 1 chr1A.!!$R1 658
6 TraesCS2B01G298800 chr3D 499629451 499630168 717 True 656 656 83.702 4 703 1 chr3D.!!$R2 699
7 TraesCS2B01G298800 chr3D 155686303 155686997 694 False 641 641 83.807 14 697 1 chr3D.!!$F1 683
8 TraesCS2B01G298800 chr7A 109762663 109763359 696 True 619 619 83.217 4 697 1 chr7A.!!$R1 693

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
359 381 0.036164 AATACAGGCCGTGTTGCAGA 59.964 50.000 12.22 0.00 40.94 4.26 F
747 778 0.623723 GGTGATCCAAACAGGGCCTA 59.376 55.000 5.28 0.00 38.24 3.93 F
753 784 0.698818 CCAAACAGGGCCTAAGAGGT 59.301 55.000 5.28 0.00 37.80 3.85 F
754 785 1.075536 CCAAACAGGGCCTAAGAGGTT 59.924 52.381 5.28 2.43 37.80 3.50 F
2379 2423 0.768221 TCCTTGGGTTCAGCCAGTCT 60.768 55.000 0.00 0.00 39.65 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1200 1241 0.623324 CCATTAGTGGGGTCTGGGGA 60.623 60.000 0.00 0.0 42.11 4.81 R
1836 1880 1.814429 TCACCTCAAACCCTTCCTGA 58.186 50.000 0.00 0.0 0.00 3.86 R
2379 2423 3.270027 CGCATTAATGAACTCCACTGGA 58.730 45.455 19.73 0.0 0.00 3.86 R
2563 2607 6.266323 AGTTTAGTCAGCATATCTACACACG 58.734 40.000 0.00 0.0 0.00 4.49 R
3467 3518 0.320374 TAGCGTGGTGTCAAAGAGGG 59.680 55.000 0.00 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 31 3.751175 CGGGATCTTTTTGCAACAGAGTA 59.249 43.478 12.06 0.00 0.00 2.59
32 36 6.095377 GGATCTTTTTGCAACAGAGTATTGG 58.905 40.000 12.06 0.00 0.00 3.16
39 43 5.222079 TGCAACAGAGTATTGGTGTAGAA 57.778 39.130 0.00 0.00 38.06 2.10
118 125 7.913297 TGTTACAAAAGATTGTCTAAGTTGCAC 59.087 33.333 0.00 0.00 46.78 4.57
123 130 4.632153 AGATTGTCTAAGTTGCACTCGTT 58.368 39.130 0.00 0.00 0.00 3.85
140 147 1.725706 CGTTGTTCGCCGTTATGGTTA 59.274 47.619 0.00 0.00 41.21 2.85
193 211 7.339466 GGTAGAGGACACATGAAAAATAATGGT 59.661 37.037 0.00 0.00 0.00 3.55
205 223 5.590530 AAAATAATGGTGTGTGTGTGTGT 57.409 34.783 0.00 0.00 0.00 3.72
211 229 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
215 233 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
260 279 0.666913 GACTCTTATGCGTAGGCCGA 59.333 55.000 4.72 0.00 39.56 5.54
348 370 7.009540 GTCACTTTTTATCATTGCAATACAGGC 59.990 37.037 12.53 0.00 0.00 4.85
359 381 0.036164 AATACAGGCCGTGTTGCAGA 59.964 50.000 12.22 0.00 40.94 4.26
371 394 3.061006 CGTGTTGCAGAAAATTCTTGCAC 60.061 43.478 15.16 10.58 39.35 4.57
388 411 1.885560 CACCACGGGTCATGTTACAA 58.114 50.000 0.00 0.00 31.02 2.41
389 412 2.432444 CACCACGGGTCATGTTACAAT 58.568 47.619 0.00 0.00 31.02 2.71
537 566 7.697352 TCTTGTTACATTTTCTTGCAACATG 57.303 32.000 0.00 0.00 33.92 3.21
576 605 9.209175 GAAACTATTGTAGAGAACAGTGAACAT 57.791 33.333 0.00 0.00 39.87 2.71
606 635 3.661758 GTCACGTTGACCGAAAGAAAA 57.338 42.857 6.82 0.00 41.37 2.29
654 683 0.943673 CGTGTCACATGAACAAGCCA 59.056 50.000 0.00 0.00 0.00 4.75
728 759 8.804688 TTACAATTGTAATTGAAAGGGAAACG 57.195 30.769 23.91 0.00 46.72 3.60
729 760 6.220201 ACAATTGTAATTGAAAGGGAAACGG 58.780 36.000 20.68 0.00 46.72 4.44
730 761 6.183360 ACAATTGTAATTGAAAGGGAAACGGT 60.183 34.615 20.68 0.00 46.72 4.83
731 762 4.839668 TGTAATTGAAAGGGAAACGGTG 57.160 40.909 0.00 0.00 0.00 4.94
732 763 4.462133 TGTAATTGAAAGGGAAACGGTGA 58.538 39.130 0.00 0.00 0.00 4.02
733 764 5.074115 TGTAATTGAAAGGGAAACGGTGAT 58.926 37.500 0.00 0.00 0.00 3.06
734 765 4.783764 AATTGAAAGGGAAACGGTGATC 57.216 40.909 0.00 0.00 0.00 2.92
735 766 2.194201 TGAAAGGGAAACGGTGATCC 57.806 50.000 4.98 4.98 34.85 3.36
736 767 1.422024 TGAAAGGGAAACGGTGATCCA 59.578 47.619 13.38 0.00 37.46 3.41
737 768 2.158593 TGAAAGGGAAACGGTGATCCAA 60.159 45.455 13.38 0.00 37.46 3.53
738 769 2.668144 AAGGGAAACGGTGATCCAAA 57.332 45.000 13.38 0.00 37.46 3.28
739 770 1.905637 AGGGAAACGGTGATCCAAAC 58.094 50.000 13.38 0.00 37.46 2.93
740 771 1.144093 AGGGAAACGGTGATCCAAACA 59.856 47.619 13.38 0.00 37.46 2.83
741 772 1.539827 GGGAAACGGTGATCCAAACAG 59.460 52.381 13.38 0.00 37.46 3.16
742 773 1.539827 GGAAACGGTGATCCAAACAGG 59.460 52.381 8.03 0.00 35.71 4.00
743 774 1.539827 GAAACGGTGATCCAAACAGGG 59.460 52.381 0.00 0.00 38.24 4.45
744 775 0.893727 AACGGTGATCCAAACAGGGC 60.894 55.000 0.00 0.00 38.24 5.19
745 776 2.046285 CGGTGATCCAAACAGGGCC 61.046 63.158 0.00 0.00 38.24 5.80
746 777 1.384191 GGTGATCCAAACAGGGCCT 59.616 57.895 0.00 0.00 38.24 5.19
747 778 0.623723 GGTGATCCAAACAGGGCCTA 59.376 55.000 5.28 0.00 38.24 3.93
748 779 1.005450 GGTGATCCAAACAGGGCCTAA 59.995 52.381 5.28 0.00 38.24 2.69
749 780 2.369394 GTGATCCAAACAGGGCCTAAG 58.631 52.381 5.28 0.00 38.24 2.18
750 781 2.026262 GTGATCCAAACAGGGCCTAAGA 60.026 50.000 5.28 0.00 38.24 2.10
751 782 2.239654 TGATCCAAACAGGGCCTAAGAG 59.760 50.000 5.28 0.00 38.24 2.85
752 783 0.991920 TCCAAACAGGGCCTAAGAGG 59.008 55.000 5.28 6.84 38.24 3.69
753 784 0.698818 CCAAACAGGGCCTAAGAGGT 59.301 55.000 5.28 0.00 37.80 3.85
754 785 1.075536 CCAAACAGGGCCTAAGAGGTT 59.924 52.381 5.28 2.43 37.80 3.50
755 786 2.490902 CCAAACAGGGCCTAAGAGGTTT 60.491 50.000 5.28 9.57 37.80 3.27
756 787 3.230976 CAAACAGGGCCTAAGAGGTTTT 58.769 45.455 5.28 0.00 37.80 2.43
757 788 3.612795 AACAGGGCCTAAGAGGTTTTT 57.387 42.857 5.28 0.00 37.80 1.94
834 874 3.094484 TCCCCAGCATTTCCGTAAAAT 57.906 42.857 0.00 0.00 38.11 1.82
841 881 6.095720 CCCAGCATTTCCGTAAAATAACCTTA 59.904 38.462 0.00 0.00 35.77 2.69
898 938 2.227194 CCCAAATATTAGTCCCACCGC 58.773 52.381 0.00 0.00 0.00 5.68
930 970 1.614413 GTCGTCTCCACACTCTTCCTT 59.386 52.381 0.00 0.00 0.00 3.36
974 1014 1.609072 CCTTCGCACCGAGATCTGATA 59.391 52.381 0.00 0.00 37.14 2.15
2034 2078 4.673841 GCAAAGAAGCTACAGAATCCAAGC 60.674 45.833 0.00 0.00 35.16 4.01
2124 2168 5.094812 GCTATGCTGTCTCAGAAGATATCG 58.905 45.833 0.00 0.00 33.08 2.92
2379 2423 0.768221 TCCTTGGGTTCAGCCAGTCT 60.768 55.000 0.00 0.00 39.65 3.24
2541 2585 5.758296 TGTAGGCTTCAGTTTGTTACTTCAG 59.242 40.000 0.00 0.00 33.85 3.02
2823 2870 4.023707 CAGTTTTACCTCCTTTGTCTGCTG 60.024 45.833 0.00 0.00 0.00 4.41
3018 3065 2.396608 AGATGTGGAGATGACCTGAGG 58.603 52.381 0.00 0.00 0.00 3.86
3071 3118 2.437281 GGAGGGAGATGCAAAGAGATGA 59.563 50.000 0.00 0.00 0.00 2.92
3072 3119 3.072768 GGAGGGAGATGCAAAGAGATGAT 59.927 47.826 0.00 0.00 0.00 2.45
3073 3120 4.066490 GAGGGAGATGCAAAGAGATGATG 58.934 47.826 0.00 0.00 0.00 3.07
3090 3137 2.027745 TGATGCCTCAGTCCTTGTCTTC 60.028 50.000 0.00 0.00 0.00 2.87
3118 3165 5.011125 ACCTCGAGGATTATGATAACTGGTG 59.989 44.000 37.69 4.77 38.94 4.17
3179 3230 9.973661 TCCCTTTATTCTTTGATGATCAGTTTA 57.026 29.630 0.09 0.00 0.00 2.01
3192 3243 6.899393 TGATCAGTTTATTCAGTTTTGGCT 57.101 33.333 0.00 0.00 0.00 4.75
3212 3263 3.798202 CTCTCAAGGGTATGGTGCTTAC 58.202 50.000 0.00 0.00 0.00 2.34
3338 3389 9.442047 CTATTATCACAATCAATTACTCCCTCC 57.558 37.037 0.00 0.00 0.00 4.30
3339 3390 4.137116 TCACAATCAATTACTCCCTCCG 57.863 45.455 0.00 0.00 0.00 4.63
3340 3391 3.517901 TCACAATCAATTACTCCCTCCGT 59.482 43.478 0.00 0.00 0.00 4.69
3341 3392 4.712829 TCACAATCAATTACTCCCTCCGTA 59.287 41.667 0.00 0.00 0.00 4.02
3342 3393 4.809426 CACAATCAATTACTCCCTCCGTAC 59.191 45.833 0.00 0.00 0.00 3.67
3343 3394 4.141779 ACAATCAATTACTCCCTCCGTACC 60.142 45.833 0.00 0.00 0.00 3.34
3344 3395 3.104519 TCAATTACTCCCTCCGTACCA 57.895 47.619 0.00 0.00 0.00 3.25
3345 3396 3.443052 TCAATTACTCCCTCCGTACCAA 58.557 45.455 0.00 0.00 0.00 3.67
3346 3397 3.196254 TCAATTACTCCCTCCGTACCAAC 59.804 47.826 0.00 0.00 0.00 3.77
3347 3398 2.307496 TTACTCCCTCCGTACCAACA 57.693 50.000 0.00 0.00 0.00 3.33
3348 3399 2.537633 TACTCCCTCCGTACCAACAT 57.462 50.000 0.00 0.00 0.00 2.71
3349 3400 2.537633 ACTCCCTCCGTACCAACATA 57.462 50.000 0.00 0.00 0.00 2.29
3350 3401 3.042059 ACTCCCTCCGTACCAACATAT 57.958 47.619 0.00 0.00 0.00 1.78
3351 3402 4.188937 ACTCCCTCCGTACCAACATATA 57.811 45.455 0.00 0.00 0.00 0.86
3352 3403 4.549668 ACTCCCTCCGTACCAACATATAA 58.450 43.478 0.00 0.00 0.00 0.98
3353 3404 4.587684 ACTCCCTCCGTACCAACATATAAG 59.412 45.833 0.00 0.00 0.00 1.73
3354 3405 4.549668 TCCCTCCGTACCAACATATAAGT 58.450 43.478 0.00 0.00 0.00 2.24
3355 3406 4.964262 TCCCTCCGTACCAACATATAAGTT 59.036 41.667 0.00 0.00 0.00 2.66
3356 3407 6.135454 TCCCTCCGTACCAACATATAAGTTA 58.865 40.000 0.00 0.00 0.00 2.24
3357 3408 6.040842 TCCCTCCGTACCAACATATAAGTTAC 59.959 42.308 0.00 0.00 0.00 2.50
3358 3409 6.041296 CCCTCCGTACCAACATATAAGTTACT 59.959 42.308 0.00 0.00 0.00 2.24
3359 3410 7.231317 CCCTCCGTACCAACATATAAGTTACTA 59.769 40.741 0.00 0.00 0.00 1.82
3360 3411 8.078596 CCTCCGTACCAACATATAAGTTACTAC 58.921 40.741 0.00 0.00 0.00 2.73
3361 3412 8.518430 TCCGTACCAACATATAAGTTACTACA 57.482 34.615 0.00 0.00 0.00 2.74
3362 3413 9.135189 TCCGTACCAACATATAAGTTACTACAT 57.865 33.333 0.00 0.00 0.00 2.29
3363 3414 9.403110 CCGTACCAACATATAAGTTACTACATC 57.597 37.037 0.00 0.00 0.00 3.06
3364 3415 9.403110 CGTACCAACATATAAGTTACTACATCC 57.597 37.037 0.00 0.00 0.00 3.51
3418 3469 8.150827 TGATGTCTTATATTATGGGAGGAAGG 57.849 38.462 0.00 0.00 0.00 3.46
3419 3470 6.952605 TGTCTTATATTATGGGAGGAAGGG 57.047 41.667 0.00 0.00 0.00 3.95
3420 3471 6.639938 TGTCTTATATTATGGGAGGAAGGGA 58.360 40.000 0.00 0.00 0.00 4.20
3421 3472 6.730977 TGTCTTATATTATGGGAGGAAGGGAG 59.269 42.308 0.00 0.00 0.00 4.30
3422 3473 6.731448 GTCTTATATTATGGGAGGAAGGGAGT 59.269 42.308 0.00 0.00 0.00 3.85
3423 3474 7.899709 GTCTTATATTATGGGAGGAAGGGAGTA 59.100 40.741 0.00 0.00 0.00 2.59
3424 3475 7.899709 TCTTATATTATGGGAGGAAGGGAGTAC 59.100 40.741 0.00 0.00 0.00 2.73
3425 3476 4.578149 ATTATGGGAGGAAGGGAGTACT 57.422 45.455 0.00 0.00 0.00 2.73
3426 3477 2.972153 ATGGGAGGAAGGGAGTACTT 57.028 50.000 0.00 0.00 0.00 2.24
3427 3478 2.735259 TGGGAGGAAGGGAGTACTTT 57.265 50.000 0.00 0.00 0.00 2.66
3428 3479 2.999928 TGGGAGGAAGGGAGTACTTTT 58.000 47.619 0.00 0.00 0.00 2.27
3429 3480 3.332968 TGGGAGGAAGGGAGTACTTTTT 58.667 45.455 0.00 0.00 0.00 1.94
3446 3497 3.791973 TTTTTCAATGTTGCGACCAGT 57.208 38.095 0.45 0.00 0.00 4.00
3447 3498 3.791973 TTTTCAATGTTGCGACCAGTT 57.208 38.095 0.45 0.00 0.00 3.16
3448 3499 4.902443 TTTTCAATGTTGCGACCAGTTA 57.098 36.364 0.45 0.00 0.00 2.24
3449 3500 3.889196 TTCAATGTTGCGACCAGTTAC 57.111 42.857 0.45 0.00 0.00 2.50
3450 3501 3.120321 TCAATGTTGCGACCAGTTACT 57.880 42.857 0.45 0.00 0.00 2.24
3451 3502 3.472652 TCAATGTTGCGACCAGTTACTT 58.527 40.909 0.45 0.00 0.00 2.24
3452 3503 3.249799 TCAATGTTGCGACCAGTTACTTG 59.750 43.478 0.45 0.00 0.00 3.16
3453 3504 2.319136 TGTTGCGACCAGTTACTTGT 57.681 45.000 0.45 0.00 0.00 3.16
3454 3505 3.455990 TGTTGCGACCAGTTACTTGTA 57.544 42.857 0.45 0.00 0.00 2.41
3455 3506 3.125316 TGTTGCGACCAGTTACTTGTAC 58.875 45.455 0.45 0.00 0.00 2.90
3456 3507 3.125316 GTTGCGACCAGTTACTTGTACA 58.875 45.455 0.00 0.00 0.00 2.90
3457 3508 3.455990 TGCGACCAGTTACTTGTACAA 57.544 42.857 8.28 8.28 0.00 2.41
3458 3509 3.794717 TGCGACCAGTTACTTGTACAAA 58.205 40.909 10.03 0.00 0.00 2.83
3459 3510 3.556775 TGCGACCAGTTACTTGTACAAAC 59.443 43.478 10.03 5.30 0.00 2.93
3460 3511 3.805971 GCGACCAGTTACTTGTACAAACT 59.194 43.478 10.03 7.64 33.82 2.66
3461 3512 4.984161 GCGACCAGTTACTTGTACAAACTA 59.016 41.667 10.03 0.00 32.35 2.24
3462 3513 5.118203 GCGACCAGTTACTTGTACAAACTAG 59.882 44.000 10.03 6.31 32.35 2.57
3463 3514 6.211515 CGACCAGTTACTTGTACAAACTAGT 58.788 40.000 10.03 9.42 42.98 2.57
3464 3515 7.362662 CGACCAGTTACTTGTACAAACTAGTA 58.637 38.462 10.03 5.44 41.17 1.82
3465 3516 7.324616 CGACCAGTTACTTGTACAAACTAGTAC 59.675 40.741 10.03 4.01 41.57 2.73
3466 3517 8.242729 ACCAGTTACTTGTACAAACTAGTACT 57.757 34.615 10.03 0.00 41.57 2.73
3467 3518 8.355913 ACCAGTTACTTGTACAAACTAGTACTC 58.644 37.037 10.03 4.71 41.57 2.59
3468 3519 7.811713 CCAGTTACTTGTACAAACTAGTACTCC 59.188 40.741 10.03 0.13 41.57 3.85
3469 3520 7.811713 CAGTTACTTGTACAAACTAGTACTCCC 59.188 40.741 10.03 0.00 41.57 4.30
3470 3521 7.727634 AGTTACTTGTACAAACTAGTACTCCCT 59.272 37.037 10.03 0.06 41.57 4.20
3471 3522 6.587206 ACTTGTACAAACTAGTACTCCCTC 57.413 41.667 10.03 0.00 43.65 4.30
3472 3523 6.313324 ACTTGTACAAACTAGTACTCCCTCT 58.687 40.000 10.03 0.00 43.65 3.69
3473 3524 6.781507 ACTTGTACAAACTAGTACTCCCTCTT 59.218 38.462 10.03 0.00 43.65 2.85
3474 3525 7.289549 ACTTGTACAAACTAGTACTCCCTCTTT 59.710 37.037 10.03 0.00 43.65 2.52
3475 3526 6.989659 TGTACAAACTAGTACTCCCTCTTTG 58.010 40.000 0.00 4.16 43.65 2.77
3476 3527 6.779049 TGTACAAACTAGTACTCCCTCTTTGA 59.221 38.462 0.00 0.00 43.65 2.69
3477 3528 6.099159 ACAAACTAGTACTCCCTCTTTGAC 57.901 41.667 0.00 0.00 0.00 3.18
3478 3529 5.601313 ACAAACTAGTACTCCCTCTTTGACA 59.399 40.000 0.00 0.00 0.00 3.58
3479 3530 5.725325 AACTAGTACTCCCTCTTTGACAC 57.275 43.478 0.00 0.00 0.00 3.67
3480 3531 4.087907 ACTAGTACTCCCTCTTTGACACC 58.912 47.826 0.00 0.00 0.00 4.16
3481 3532 2.972348 AGTACTCCCTCTTTGACACCA 58.028 47.619 0.00 0.00 0.00 4.17
3482 3533 2.633481 AGTACTCCCTCTTTGACACCAC 59.367 50.000 0.00 0.00 0.00 4.16
3483 3534 0.393077 ACTCCCTCTTTGACACCACG 59.607 55.000 0.00 0.00 0.00 4.94
3484 3535 0.951040 CTCCCTCTTTGACACCACGC 60.951 60.000 0.00 0.00 0.00 5.34
3485 3536 1.071471 CCCTCTTTGACACCACGCT 59.929 57.895 0.00 0.00 0.00 5.07
3486 3537 0.320374 CCCTCTTTGACACCACGCTA 59.680 55.000 0.00 0.00 0.00 4.26
3487 3538 1.673033 CCCTCTTTGACACCACGCTAG 60.673 57.143 0.00 0.00 0.00 3.42
3488 3539 1.000955 CCTCTTTGACACCACGCTAGT 59.999 52.381 0.00 0.00 0.00 2.57
3495 3546 2.319136 ACACCACGCTAGTGTCAAAA 57.681 45.000 5.82 0.00 45.13 2.44
3496 3547 2.634600 ACACCACGCTAGTGTCAAAAA 58.365 42.857 5.82 0.00 45.13 1.94
3518 3569 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
3519 3570 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
3520 3571 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
3521 3572 3.640029 GTCTTACATTATGGGACGGAGGA 59.360 47.826 0.00 0.00 0.00 3.71
3522 3573 4.100498 GTCTTACATTATGGGACGGAGGAA 59.900 45.833 0.00 0.00 0.00 3.36
3523 3574 4.344102 TCTTACATTATGGGACGGAGGAAG 59.656 45.833 0.00 0.00 0.00 3.46
3524 3575 2.478292 ACATTATGGGACGGAGGAAGT 58.522 47.619 0.00 0.00 0.00 3.01
3525 3576 3.649843 ACATTATGGGACGGAGGAAGTA 58.350 45.455 0.00 0.00 0.00 2.24
3526 3577 3.387050 ACATTATGGGACGGAGGAAGTAC 59.613 47.826 0.00 0.00 0.00 2.73
3527 3578 2.832643 TATGGGACGGAGGAAGTACA 57.167 50.000 0.00 0.00 0.00 2.90
3528 3579 1.946984 ATGGGACGGAGGAAGTACAA 58.053 50.000 0.00 0.00 0.00 2.41
3529 3580 0.971386 TGGGACGGAGGAAGTACAAC 59.029 55.000 0.00 0.00 0.00 3.32
3530 3581 0.971386 GGGACGGAGGAAGTACAACA 59.029 55.000 0.00 0.00 0.00 3.33
3531 3582 1.553704 GGGACGGAGGAAGTACAACAT 59.446 52.381 0.00 0.00 0.00 2.71
3532 3583 2.027469 GGGACGGAGGAAGTACAACATT 60.027 50.000 0.00 0.00 0.00 2.71
3533 3584 3.196254 GGGACGGAGGAAGTACAACATTA 59.804 47.826 0.00 0.00 0.00 1.90
3534 3585 4.322953 GGGACGGAGGAAGTACAACATTAA 60.323 45.833 0.00 0.00 0.00 1.40
3535 3586 5.240121 GGACGGAGGAAGTACAACATTAAA 58.760 41.667 0.00 0.00 0.00 1.52
3536 3587 5.702209 GGACGGAGGAAGTACAACATTAAAA 59.298 40.000 0.00 0.00 0.00 1.52
3537 3588 6.205270 GGACGGAGGAAGTACAACATTAAAAA 59.795 38.462 0.00 0.00 0.00 1.94
3538 3589 7.198306 ACGGAGGAAGTACAACATTAAAAAG 57.802 36.000 0.00 0.00 0.00 2.27
3539 3590 6.206048 ACGGAGGAAGTACAACATTAAAAAGG 59.794 38.462 0.00 0.00 0.00 3.11
3540 3591 6.349033 CGGAGGAAGTACAACATTAAAAAGGG 60.349 42.308 0.00 0.00 0.00 3.95
3541 3592 6.492429 GGAGGAAGTACAACATTAAAAAGGGT 59.508 38.462 0.00 0.00 0.00 4.34
3542 3593 7.014905 GGAGGAAGTACAACATTAAAAAGGGTT 59.985 37.037 0.00 0.00 0.00 4.11
3543 3594 7.722363 AGGAAGTACAACATTAAAAAGGGTTG 58.278 34.615 0.00 0.00 44.57 3.77
3544 3595 7.562088 AGGAAGTACAACATTAAAAAGGGTTGA 59.438 33.333 10.00 0.00 42.34 3.18
3545 3596 8.364894 GGAAGTACAACATTAAAAAGGGTTGAT 58.635 33.333 10.00 0.00 42.34 2.57
3546 3597 9.758651 GAAGTACAACATTAAAAAGGGTTGATT 57.241 29.630 10.00 2.72 42.34 2.57
3547 3598 9.541143 AAGTACAACATTAAAAAGGGTTGATTG 57.459 29.630 10.00 0.00 42.34 2.67
3548 3599 8.147704 AGTACAACATTAAAAAGGGTTGATTGG 58.852 33.333 10.00 0.00 42.34 3.16
3549 3600 7.130681 ACAACATTAAAAAGGGTTGATTGGA 57.869 32.000 10.00 0.00 42.34 3.53
3550 3601 7.744733 ACAACATTAAAAAGGGTTGATTGGAT 58.255 30.769 10.00 0.00 42.34 3.41
3551 3602 7.877612 ACAACATTAAAAAGGGTTGATTGGATC 59.122 33.333 10.00 0.00 42.34 3.36
3552 3603 7.552050 ACATTAAAAAGGGTTGATTGGATCA 57.448 32.000 0.00 0.00 37.55 2.92
3553 3604 8.149631 ACATTAAAAAGGGTTGATTGGATCAT 57.850 30.769 0.00 0.00 39.39 2.45
3554 3605 8.605065 ACATTAAAAAGGGTTGATTGGATCATT 58.395 29.630 0.00 0.00 39.39 2.57
3555 3606 9.452287 CATTAAAAAGGGTTGATTGGATCATTT 57.548 29.630 0.00 0.00 39.39 2.32
3556 3607 8.845413 TTAAAAAGGGTTGATTGGATCATTTG 57.155 30.769 0.00 0.00 39.39 2.32
3557 3608 6.684897 AAAAGGGTTGATTGGATCATTTGA 57.315 33.333 0.00 0.00 39.39 2.69
3558 3609 5.927281 AAGGGTTGATTGGATCATTTGAG 57.073 39.130 0.00 0.00 39.39 3.02
3559 3610 4.284178 AGGGTTGATTGGATCATTTGAGG 58.716 43.478 0.00 0.00 39.39 3.86
3560 3611 4.017222 AGGGTTGATTGGATCATTTGAGGA 60.017 41.667 0.00 0.00 39.39 3.71
3561 3612 4.711355 GGGTTGATTGGATCATTTGAGGAA 59.289 41.667 0.00 0.00 39.39 3.36
3562 3613 5.163478 GGGTTGATTGGATCATTTGAGGAAG 60.163 44.000 0.00 0.00 39.39 3.46
3563 3614 5.163478 GGTTGATTGGATCATTTGAGGAAGG 60.163 44.000 0.00 0.00 39.39 3.46
3564 3615 4.539726 TGATTGGATCATTTGAGGAAGGG 58.460 43.478 0.00 0.00 33.59 3.95
3565 3616 4.230272 TGATTGGATCATTTGAGGAAGGGA 59.770 41.667 0.00 0.00 33.59 4.20
3566 3617 4.673328 TTGGATCATTTGAGGAAGGGAA 57.327 40.909 0.00 0.00 0.00 3.97
3567 3618 3.968265 TGGATCATTTGAGGAAGGGAAC 58.032 45.455 0.00 0.00 0.00 3.62
3589 3640 8.936864 GGAACCAAGGAATCATAATATAAGACG 58.063 37.037 0.00 0.00 0.00 4.18
3590 3641 9.490379 GAACCAAGGAATCATAATATAAGACGT 57.510 33.333 0.00 0.00 0.00 4.34
3591 3642 9.847224 AACCAAGGAATCATAATATAAGACGTT 57.153 29.630 0.00 0.00 0.00 3.99
3634 3685 2.715763 TGGGACAGAGGGAGTACTTT 57.284 50.000 0.00 0.00 0.00 2.66
3635 3686 2.986050 TGGGACAGAGGGAGTACTTTT 58.014 47.619 0.00 0.00 0.00 2.27
3636 3687 3.323775 TGGGACAGAGGGAGTACTTTTT 58.676 45.455 0.00 0.00 0.00 1.94
3652 3703 2.679355 TTTTTCGATGTTGCGACCAG 57.321 45.000 0.45 0.00 40.42 4.00
3653 3704 1.588674 TTTTCGATGTTGCGACCAGT 58.411 45.000 0.45 0.00 40.42 4.00
3654 3705 1.588674 TTTCGATGTTGCGACCAGTT 58.411 45.000 0.45 0.00 40.42 3.16
3655 3706 2.442212 TTCGATGTTGCGACCAGTTA 57.558 45.000 0.45 0.00 40.42 2.24
3656 3707 1.990799 TCGATGTTGCGACCAGTTAG 58.009 50.000 0.45 0.00 35.01 2.34
3657 3708 1.271379 TCGATGTTGCGACCAGTTAGT 59.729 47.619 0.45 0.00 35.01 2.24
3658 3709 1.390123 CGATGTTGCGACCAGTTAGTG 59.610 52.381 0.45 0.00 0.00 2.74
3659 3710 2.413837 GATGTTGCGACCAGTTAGTGT 58.586 47.619 0.45 0.00 0.00 3.55
3660 3711 2.319136 TGTTGCGACCAGTTAGTGTT 57.681 45.000 0.45 0.00 0.00 3.32
3661 3712 3.455990 TGTTGCGACCAGTTAGTGTTA 57.544 42.857 0.45 0.00 0.00 2.41
3662 3713 3.386486 TGTTGCGACCAGTTAGTGTTAG 58.614 45.455 0.45 0.00 0.00 2.34
3663 3714 3.068448 TGTTGCGACCAGTTAGTGTTAGA 59.932 43.478 0.45 0.00 0.00 2.10
3664 3715 4.243270 GTTGCGACCAGTTAGTGTTAGAT 58.757 43.478 0.00 0.00 0.00 1.98
3665 3716 4.530710 TGCGACCAGTTAGTGTTAGATT 57.469 40.909 0.00 0.00 0.00 2.40
3666 3717 4.242475 TGCGACCAGTTAGTGTTAGATTG 58.758 43.478 0.00 0.00 0.00 2.67
3667 3718 3.617263 GCGACCAGTTAGTGTTAGATTGG 59.383 47.826 0.00 0.00 0.00 3.16
3668 3719 4.181578 CGACCAGTTAGTGTTAGATTGGG 58.818 47.826 0.00 0.00 0.00 4.12
3669 3720 4.322499 CGACCAGTTAGTGTTAGATTGGGT 60.322 45.833 0.00 0.00 0.00 4.51
3670 3721 5.161943 ACCAGTTAGTGTTAGATTGGGTC 57.838 43.478 0.00 0.00 0.00 4.46
3671 3722 4.595781 ACCAGTTAGTGTTAGATTGGGTCA 59.404 41.667 0.00 0.00 0.00 4.02
3672 3723 5.250774 ACCAGTTAGTGTTAGATTGGGTCAT 59.749 40.000 0.00 0.00 0.00 3.06
3673 3724 6.180472 CCAGTTAGTGTTAGATTGGGTCATT 58.820 40.000 0.00 0.00 0.00 2.57
3674 3725 6.659242 CCAGTTAGTGTTAGATTGGGTCATTT 59.341 38.462 0.00 0.00 0.00 2.32
3675 3726 7.362056 CCAGTTAGTGTTAGATTGGGTCATTTG 60.362 40.741 0.00 0.00 0.00 2.32
3676 3727 6.659242 AGTTAGTGTTAGATTGGGTCATTTGG 59.341 38.462 0.00 0.00 0.00 3.28
3677 3728 5.255397 AGTGTTAGATTGGGTCATTTGGA 57.745 39.130 0.00 0.00 0.00 3.53
3678 3729 5.256474 AGTGTTAGATTGGGTCATTTGGAG 58.744 41.667 0.00 0.00 0.00 3.86
3679 3730 5.014123 AGTGTTAGATTGGGTCATTTGGAGA 59.986 40.000 0.00 0.00 0.00 3.71
3680 3731 5.710099 GTGTTAGATTGGGTCATTTGGAGAA 59.290 40.000 0.00 0.00 0.00 2.87
3681 3732 5.945784 TGTTAGATTGGGTCATTTGGAGAAG 59.054 40.000 0.00 0.00 0.00 2.85
3682 3733 3.973425 AGATTGGGTCATTTGGAGAAGG 58.027 45.455 0.00 0.00 0.00 3.46
3683 3734 2.603075 TTGGGTCATTTGGAGAAGGG 57.397 50.000 0.00 0.00 0.00 3.95
3684 3735 1.753903 TGGGTCATTTGGAGAAGGGA 58.246 50.000 0.00 0.00 0.00 4.20
3685 3736 2.069775 TGGGTCATTTGGAGAAGGGAA 58.930 47.619 0.00 0.00 0.00 3.97
3686 3737 2.225017 TGGGTCATTTGGAGAAGGGAAC 60.225 50.000 0.00 0.00 0.00 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 15 5.591099 ACACCAATACTCTGTTGCAAAAAG 58.409 37.500 0.00 1.90 30.26 2.27
65 71 9.231297 TCAGCTCTATTGTAAATAAAAACTGCT 57.769 29.630 0.00 0.00 0.00 4.24
83 90 8.097038 AGACAATCTTTTGTAACATCAGCTCTA 58.903 33.333 0.00 0.00 46.01 2.43
118 125 0.368907 CCATAACGGCGAACAACGAG 59.631 55.000 16.62 0.00 45.77 4.18
123 130 1.549620 TCCTAACCATAACGGCGAACA 59.450 47.619 16.62 0.00 39.03 3.18
140 147 1.039856 GCAACAATGGTGGTGTTCCT 58.960 50.000 0.00 0.00 44.95 3.36
193 211 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
205 223 1.435408 CCATGCGTCACACACACACA 61.435 55.000 0.00 0.00 0.00 3.72
211 229 1.441738 CTTGATCCATGCGTCACACA 58.558 50.000 0.00 0.00 0.00 3.72
215 233 1.815003 CGCCTTGATCCATGCGTCA 60.815 57.895 8.07 0.00 41.95 4.35
245 264 1.660575 CCGTCGGCCTACGCATAAG 60.661 63.158 23.47 6.46 43.86 1.73
260 279 3.754850 CCGGACCTTTTTAAAAGATCCGT 59.245 43.478 36.38 19.75 44.77 4.69
292 314 4.772100 TCGCTCAATCCACCTGATATGATA 59.228 41.667 0.00 0.00 31.83 2.15
348 370 2.472488 GCAAGAATTTTCTGCAACACGG 59.528 45.455 0.00 0.00 37.65 4.94
359 381 1.339929 GACCCGTGGTGCAAGAATTTT 59.660 47.619 0.00 0.00 35.25 1.82
371 394 4.513198 AAAATTGTAACATGACCCGTGG 57.487 40.909 0.00 0.00 0.00 4.94
458 484 6.774354 AATTGCAACAAAAGCTCTGTTATG 57.226 33.333 0.00 5.38 35.26 1.90
537 566 4.154918 ACAATAGTTTCTGCAGCAAGCTAC 59.845 41.667 9.47 0.00 45.94 3.58
606 635 4.476297 ACCTGGACGGGTTTTATCTTTTT 58.524 39.130 0.00 0.00 35.89 1.94
611 640 2.767960 TCCTACCTGGACGGGTTTTATC 59.232 50.000 8.32 0.00 40.56 1.75
612 641 2.836667 TCCTACCTGGACGGGTTTTAT 58.163 47.619 8.32 0.00 40.56 1.40
613 642 2.323999 TCCTACCTGGACGGGTTTTA 57.676 50.000 8.32 0.00 40.56 1.52
614 643 3.168928 TCCTACCTGGACGGGTTTT 57.831 52.632 8.32 0.00 40.56 2.43
637 666 0.953727 GCTGGCTTGTTCATGTGACA 59.046 50.000 0.00 0.00 0.00 3.58
705 736 6.183360 ACCGTTTCCCTTTCAATTACAATTGT 60.183 34.615 16.68 16.68 44.66 2.71
706 737 6.145371 CACCGTTTCCCTTTCAATTACAATTG 59.855 38.462 3.24 3.24 45.49 2.32
707 738 6.041069 TCACCGTTTCCCTTTCAATTACAATT 59.959 34.615 0.00 0.00 0.00 2.32
708 739 5.536916 TCACCGTTTCCCTTTCAATTACAAT 59.463 36.000 0.00 0.00 0.00 2.71
709 740 4.888239 TCACCGTTTCCCTTTCAATTACAA 59.112 37.500 0.00 0.00 0.00 2.41
710 741 4.462133 TCACCGTTTCCCTTTCAATTACA 58.538 39.130 0.00 0.00 0.00 2.41
711 742 5.392703 GGATCACCGTTTCCCTTTCAATTAC 60.393 44.000 0.00 0.00 0.00 1.89
712 743 4.703093 GGATCACCGTTTCCCTTTCAATTA 59.297 41.667 0.00 0.00 0.00 1.40
713 744 3.509967 GGATCACCGTTTCCCTTTCAATT 59.490 43.478 0.00 0.00 0.00 2.32
714 745 3.089284 GGATCACCGTTTCCCTTTCAAT 58.911 45.455 0.00 0.00 0.00 2.57
715 746 2.158593 TGGATCACCGTTTCCCTTTCAA 60.159 45.455 0.00 0.00 39.42 2.69
716 747 1.422024 TGGATCACCGTTTCCCTTTCA 59.578 47.619 0.00 0.00 39.42 2.69
717 748 2.194201 TGGATCACCGTTTCCCTTTC 57.806 50.000 0.00 0.00 39.42 2.62
718 749 2.626266 GTTTGGATCACCGTTTCCCTTT 59.374 45.455 0.00 0.00 39.42 3.11
719 750 2.235891 GTTTGGATCACCGTTTCCCTT 58.764 47.619 0.00 0.00 39.42 3.95
720 751 1.144093 TGTTTGGATCACCGTTTCCCT 59.856 47.619 0.00 0.00 39.42 4.20
721 752 1.539827 CTGTTTGGATCACCGTTTCCC 59.460 52.381 0.00 0.00 39.42 3.97
722 753 1.539827 CCTGTTTGGATCACCGTTTCC 59.460 52.381 0.00 0.00 39.42 3.13
723 754 1.539827 CCCTGTTTGGATCACCGTTTC 59.460 52.381 0.00 0.00 39.42 2.78
724 755 1.616159 CCCTGTTTGGATCACCGTTT 58.384 50.000 0.00 0.00 39.42 3.60
725 756 0.893727 GCCCTGTTTGGATCACCGTT 60.894 55.000 0.00 0.00 39.42 4.44
726 757 1.303317 GCCCTGTTTGGATCACCGT 60.303 57.895 0.00 0.00 39.42 4.83
727 758 2.046285 GGCCCTGTTTGGATCACCG 61.046 63.158 0.00 0.00 39.42 4.94
728 759 0.623723 TAGGCCCTGTTTGGATCACC 59.376 55.000 0.00 0.00 38.35 4.02
729 760 2.026262 TCTTAGGCCCTGTTTGGATCAC 60.026 50.000 0.00 0.00 38.35 3.06
730 761 2.239654 CTCTTAGGCCCTGTTTGGATCA 59.760 50.000 0.00 0.00 38.35 2.92
731 762 2.422093 CCTCTTAGGCCCTGTTTGGATC 60.422 54.545 0.00 0.00 38.35 3.36
732 763 1.566231 CCTCTTAGGCCCTGTTTGGAT 59.434 52.381 0.00 0.00 38.35 3.41
733 764 0.991920 CCTCTTAGGCCCTGTTTGGA 59.008 55.000 0.00 0.00 38.35 3.53
734 765 0.698818 ACCTCTTAGGCCCTGTTTGG 59.301 55.000 0.00 0.00 39.63 3.28
735 766 2.586648 AACCTCTTAGGCCCTGTTTG 57.413 50.000 0.00 0.00 39.63 2.93
736 767 3.612795 AAAACCTCTTAGGCCCTGTTT 57.387 42.857 0.00 0.00 39.63 2.83
737 768 3.612795 AAAAACCTCTTAGGCCCTGTT 57.387 42.857 0.00 0.00 39.63 3.16
769 800 2.664916 CGAACTGGATGGCAGTTTTTG 58.335 47.619 0.00 0.00 42.28 2.44
770 801 1.000274 GCGAACTGGATGGCAGTTTTT 60.000 47.619 0.00 0.00 42.28 1.94
771 802 0.598065 GCGAACTGGATGGCAGTTTT 59.402 50.000 0.00 0.00 42.28 2.43
772 803 0.250901 AGCGAACTGGATGGCAGTTT 60.251 50.000 0.00 0.00 42.28 2.66
773 804 0.957395 CAGCGAACTGGATGGCAGTT 60.957 55.000 0.00 0.00 44.58 3.16
774 805 1.376424 CAGCGAACTGGATGGCAGT 60.376 57.895 0.00 0.00 40.48 4.40
775 806 3.494378 CAGCGAACTGGATGGCAG 58.506 61.111 0.00 0.00 40.48 4.85
783 814 0.238289 AACGAAATGCCAGCGAACTG 59.762 50.000 0.00 0.00 44.05 3.16
784 815 0.517316 GAACGAAATGCCAGCGAACT 59.483 50.000 0.00 0.00 0.00 3.01
821 861 8.865978 GGCTTTTAAGGTTATTTTACGGAAATG 58.134 33.333 0.00 0.00 38.40 2.32
834 874 4.986054 TCTGTGGAGGCTTTTAAGGTTA 57.014 40.909 0.00 0.00 0.00 2.85
841 881 1.615384 GGCTGATCTGTGGAGGCTTTT 60.615 52.381 1.27 0.00 0.00 2.27
898 938 2.135933 GGAGACGACTGACAAGGTTTG 58.864 52.381 0.00 0.00 0.00 2.93
930 970 1.451449 TTGGGAGCTAGGGTTTGGAA 58.549 50.000 0.00 0.00 0.00 3.53
974 1014 2.938798 TGGGGCGGGGAAGTCAAT 60.939 61.111 0.00 0.00 0.00 2.57
1200 1241 0.623324 CCATTAGTGGGGTCTGGGGA 60.623 60.000 0.00 0.00 42.11 4.81
1836 1880 1.814429 TCACCTCAAACCCTTCCTGA 58.186 50.000 0.00 0.00 0.00 3.86
2379 2423 3.270027 CGCATTAATGAACTCCACTGGA 58.730 45.455 19.73 0.00 0.00 3.86
2563 2607 6.266323 AGTTTAGTCAGCATATCTACACACG 58.734 40.000 0.00 0.00 0.00 4.49
2823 2870 8.188139 CACACCATACAATAGGTAAACCATTTC 58.812 37.037 1.26 0.00 36.07 2.17
3071 3118 1.980765 TGAAGACAAGGACTGAGGCAT 59.019 47.619 0.00 0.00 0.00 4.40
3072 3119 1.345741 CTGAAGACAAGGACTGAGGCA 59.654 52.381 0.00 0.00 0.00 4.75
3073 3120 1.346068 ACTGAAGACAAGGACTGAGGC 59.654 52.381 0.00 0.00 0.00 4.70
3090 3137 7.309177 CAGTTATCATAATCCTCGAGGTACTG 58.691 42.308 30.17 21.41 41.55 2.74
3118 3165 2.047179 GACGGCCCAAGAGACACC 60.047 66.667 0.00 0.00 0.00 4.16
3179 3230 3.160269 CCCTTGAGAGCCAAAACTGAAT 58.840 45.455 0.00 0.00 33.76 2.57
3192 3243 2.167693 CGTAAGCACCATACCCTTGAGA 59.832 50.000 0.00 0.00 0.00 3.27
3212 3263 3.825308 ACACAATATGCAAAAGCACTCG 58.175 40.909 0.00 0.00 0.00 4.18
3338 3389 9.403110 GGATGTAGTAACTTATATGTTGGTACG 57.597 37.037 12.91 0.00 0.00 3.67
3392 3443 8.776119 CCTTCCTCCCATAATATAAGACATCAT 58.224 37.037 0.00 0.00 0.00 2.45
3393 3444 7.182749 CCCTTCCTCCCATAATATAAGACATCA 59.817 40.741 0.00 0.00 0.00 3.07
3394 3445 7.403231 TCCCTTCCTCCCATAATATAAGACATC 59.597 40.741 0.00 0.00 0.00 3.06
3395 3446 7.263901 TCCCTTCCTCCCATAATATAAGACAT 58.736 38.462 0.00 0.00 0.00 3.06
3396 3447 6.639938 TCCCTTCCTCCCATAATATAAGACA 58.360 40.000 0.00 0.00 0.00 3.41
3397 3448 6.731448 ACTCCCTTCCTCCCATAATATAAGAC 59.269 42.308 0.00 0.00 0.00 3.01
3398 3449 6.886637 ACTCCCTTCCTCCCATAATATAAGA 58.113 40.000 0.00 0.00 0.00 2.10
3399 3450 7.901861 AGTACTCCCTTCCTCCCATAATATAAG 59.098 40.741 0.00 0.00 0.00 1.73
3400 3451 7.786968 AGTACTCCCTTCCTCCCATAATATAA 58.213 38.462 0.00 0.00 0.00 0.98
3401 3452 7.372060 AGTACTCCCTTCCTCCCATAATATA 57.628 40.000 0.00 0.00 0.00 0.86
3402 3453 6.248080 AGTACTCCCTTCCTCCCATAATAT 57.752 41.667 0.00 0.00 0.00 1.28
3403 3454 5.698369 AGTACTCCCTTCCTCCCATAATA 57.302 43.478 0.00 0.00 0.00 0.98
3404 3455 4.578149 AGTACTCCCTTCCTCCCATAAT 57.422 45.455 0.00 0.00 0.00 1.28
3405 3456 4.363546 AAGTACTCCCTTCCTCCCATAA 57.636 45.455 0.00 0.00 0.00 1.90
3406 3457 4.363546 AAAGTACTCCCTTCCTCCCATA 57.636 45.455 0.00 0.00 0.00 2.74
3407 3458 2.972153 AAGTACTCCCTTCCTCCCAT 57.028 50.000 0.00 0.00 0.00 4.00
3408 3459 2.735259 AAAGTACTCCCTTCCTCCCA 57.265 50.000 0.00 0.00 0.00 4.37
3426 3477 3.791973 ACTGGTCGCAACATTGAAAAA 57.208 38.095 0.00 0.00 0.00 1.94
3427 3478 3.791973 AACTGGTCGCAACATTGAAAA 57.208 38.095 0.00 0.00 0.00 2.29
3428 3479 3.880490 AGTAACTGGTCGCAACATTGAAA 59.120 39.130 0.00 0.00 0.00 2.69
3429 3480 3.472652 AGTAACTGGTCGCAACATTGAA 58.527 40.909 0.00 0.00 0.00 2.69
3430 3481 3.120321 AGTAACTGGTCGCAACATTGA 57.880 42.857 0.00 0.00 0.00 2.57
3431 3482 3.003275 ACAAGTAACTGGTCGCAACATTG 59.997 43.478 0.00 0.00 0.00 2.82
3432 3483 3.211045 ACAAGTAACTGGTCGCAACATT 58.789 40.909 0.00 0.00 0.00 2.71
3433 3484 2.846193 ACAAGTAACTGGTCGCAACAT 58.154 42.857 0.00 0.00 0.00 2.71
3434 3485 2.319136 ACAAGTAACTGGTCGCAACA 57.681 45.000 0.00 0.00 0.00 3.33
3435 3486 3.125316 TGTACAAGTAACTGGTCGCAAC 58.875 45.455 0.00 0.00 0.00 4.17
3436 3487 3.455990 TGTACAAGTAACTGGTCGCAA 57.544 42.857 0.00 0.00 0.00 4.85
3437 3488 3.455990 TTGTACAAGTAACTGGTCGCA 57.544 42.857 3.59 0.00 0.00 5.10
3438 3489 3.805971 AGTTTGTACAAGTAACTGGTCGC 59.194 43.478 8.56 0.00 31.31 5.19
3439 3490 6.211515 ACTAGTTTGTACAAGTAACTGGTCG 58.788 40.000 17.41 8.76 38.65 4.79
3440 3491 8.355913 AGTACTAGTTTGTACAAGTAACTGGTC 58.644 37.037 23.25 16.95 40.99 4.02
3441 3492 8.242729 AGTACTAGTTTGTACAAGTAACTGGT 57.757 34.615 23.16 23.16 43.65 4.00
3442 3493 7.811713 GGAGTACTAGTTTGTACAAGTAACTGG 59.188 40.741 17.76 17.06 43.65 4.00
3443 3494 7.811713 GGGAGTACTAGTTTGTACAAGTAACTG 59.188 40.741 17.76 11.68 43.65 3.16
3444 3495 7.727634 AGGGAGTACTAGTTTGTACAAGTAACT 59.272 37.037 14.22 14.22 43.65 2.24
3445 3496 7.890515 AGGGAGTACTAGTTTGTACAAGTAAC 58.109 38.462 8.56 4.62 43.65 2.50
3446 3497 7.946776 AGAGGGAGTACTAGTTTGTACAAGTAA 59.053 37.037 8.56 0.00 43.65 2.24
3447 3498 7.465116 AGAGGGAGTACTAGTTTGTACAAGTA 58.535 38.462 8.56 4.78 43.65 2.24
3448 3499 6.313324 AGAGGGAGTACTAGTTTGTACAAGT 58.687 40.000 8.56 5.80 43.65 3.16
3449 3500 6.837471 AGAGGGAGTACTAGTTTGTACAAG 57.163 41.667 8.56 0.00 43.65 3.16
3450 3501 7.288389 TCAAAGAGGGAGTACTAGTTTGTACAA 59.712 37.037 3.59 3.59 43.65 2.41
3451 3502 6.779049 TCAAAGAGGGAGTACTAGTTTGTACA 59.221 38.462 0.00 0.00 43.65 2.90
3452 3503 7.089538 GTCAAAGAGGGAGTACTAGTTTGTAC 58.910 42.308 0.00 0.00 42.09 2.90
3453 3504 6.779049 TGTCAAAGAGGGAGTACTAGTTTGTA 59.221 38.462 0.00 0.00 31.37 2.41
3454 3505 5.601313 TGTCAAAGAGGGAGTACTAGTTTGT 59.399 40.000 0.00 0.00 31.37 2.83
3455 3506 5.927115 GTGTCAAAGAGGGAGTACTAGTTTG 59.073 44.000 0.00 2.32 0.00 2.93
3456 3507 5.011840 GGTGTCAAAGAGGGAGTACTAGTTT 59.988 44.000 0.00 0.00 0.00 2.66
3457 3508 4.527427 GGTGTCAAAGAGGGAGTACTAGTT 59.473 45.833 0.00 0.00 0.00 2.24
3458 3509 4.087907 GGTGTCAAAGAGGGAGTACTAGT 58.912 47.826 0.00 0.00 0.00 2.57
3459 3510 4.082136 GTGGTGTCAAAGAGGGAGTACTAG 60.082 50.000 0.00 0.00 0.00 2.57
3460 3511 3.830755 GTGGTGTCAAAGAGGGAGTACTA 59.169 47.826 0.00 0.00 0.00 1.82
3461 3512 2.633481 GTGGTGTCAAAGAGGGAGTACT 59.367 50.000 0.00 0.00 0.00 2.73
3462 3513 2.609737 CGTGGTGTCAAAGAGGGAGTAC 60.610 54.545 0.00 0.00 0.00 2.73
3463 3514 1.616865 CGTGGTGTCAAAGAGGGAGTA 59.383 52.381 0.00 0.00 0.00 2.59
3464 3515 0.393077 CGTGGTGTCAAAGAGGGAGT 59.607 55.000 0.00 0.00 0.00 3.85
3465 3516 0.951040 GCGTGGTGTCAAAGAGGGAG 60.951 60.000 0.00 0.00 0.00 4.30
3466 3517 1.070786 GCGTGGTGTCAAAGAGGGA 59.929 57.895 0.00 0.00 0.00 4.20
3467 3518 0.320374 TAGCGTGGTGTCAAAGAGGG 59.680 55.000 0.00 0.00 0.00 4.30
3468 3519 1.000955 ACTAGCGTGGTGTCAAAGAGG 59.999 52.381 0.00 0.00 0.00 3.69
3469 3520 2.061773 CACTAGCGTGGTGTCAAAGAG 58.938 52.381 0.00 0.00 37.50 2.85
3470 3521 1.411246 ACACTAGCGTGGTGTCAAAGA 59.589 47.619 6.58 0.00 43.35 2.52
3471 3522 1.865865 ACACTAGCGTGGTGTCAAAG 58.134 50.000 6.58 0.00 43.35 2.77
3493 3544 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
3494 3545 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
3495 3546 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
3496 3547 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
3497 3548 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
3499 3550 3.640029 TCCTCCGTCCCATAATGTAAGAC 59.360 47.826 0.00 0.00 0.00 3.01
3500 3551 3.918566 TCCTCCGTCCCATAATGTAAGA 58.081 45.455 0.00 0.00 0.00 2.10
3501 3552 4.101119 ACTTCCTCCGTCCCATAATGTAAG 59.899 45.833 0.00 0.00 0.00 2.34
3502 3553 4.035112 ACTTCCTCCGTCCCATAATGTAA 58.965 43.478 0.00 0.00 0.00 2.41
3503 3554 3.649843 ACTTCCTCCGTCCCATAATGTA 58.350 45.455 0.00 0.00 0.00 2.29
3504 3555 2.478292 ACTTCCTCCGTCCCATAATGT 58.522 47.619 0.00 0.00 0.00 2.71
3505 3556 3.386726 TGTACTTCCTCCGTCCCATAATG 59.613 47.826 0.00 0.00 0.00 1.90
3506 3557 3.649843 TGTACTTCCTCCGTCCCATAAT 58.350 45.455 0.00 0.00 0.00 1.28
3507 3558 3.104519 TGTACTTCCTCCGTCCCATAA 57.895 47.619 0.00 0.00 0.00 1.90
3508 3559 2.762327 GTTGTACTTCCTCCGTCCCATA 59.238 50.000 0.00 0.00 0.00 2.74
3509 3560 1.553704 GTTGTACTTCCTCCGTCCCAT 59.446 52.381 0.00 0.00 0.00 4.00
3510 3561 0.971386 GTTGTACTTCCTCCGTCCCA 59.029 55.000 0.00 0.00 0.00 4.37
3511 3562 0.971386 TGTTGTACTTCCTCCGTCCC 59.029 55.000 0.00 0.00 0.00 4.46
3512 3563 3.329929 AATGTTGTACTTCCTCCGTCC 57.670 47.619 0.00 0.00 0.00 4.79
3513 3564 6.790285 TTTTAATGTTGTACTTCCTCCGTC 57.210 37.500 0.00 0.00 0.00 4.79
3514 3565 6.206048 CCTTTTTAATGTTGTACTTCCTCCGT 59.794 38.462 0.00 0.00 0.00 4.69
3515 3566 6.349033 CCCTTTTTAATGTTGTACTTCCTCCG 60.349 42.308 0.00 0.00 0.00 4.63
3516 3567 6.492429 ACCCTTTTTAATGTTGTACTTCCTCC 59.508 38.462 0.00 0.00 0.00 4.30
3517 3568 7.520451 ACCCTTTTTAATGTTGTACTTCCTC 57.480 36.000 0.00 0.00 0.00 3.71
3518 3569 7.562088 TCAACCCTTTTTAATGTTGTACTTCCT 59.438 33.333 0.00 0.00 39.22 3.36
3519 3570 7.718525 TCAACCCTTTTTAATGTTGTACTTCC 58.281 34.615 0.00 0.00 39.22 3.46
3520 3571 9.758651 AATCAACCCTTTTTAATGTTGTACTTC 57.241 29.630 0.00 0.00 39.22 3.01
3521 3572 9.541143 CAATCAACCCTTTTTAATGTTGTACTT 57.459 29.630 0.00 0.00 39.22 2.24
3522 3573 8.147704 CCAATCAACCCTTTTTAATGTTGTACT 58.852 33.333 0.00 0.00 39.22 2.73
3523 3574 8.145122 TCCAATCAACCCTTTTTAATGTTGTAC 58.855 33.333 0.00 0.00 39.22 2.90
3524 3575 8.251383 TCCAATCAACCCTTTTTAATGTTGTA 57.749 30.769 0.00 0.00 39.22 2.41
3525 3576 7.130681 TCCAATCAACCCTTTTTAATGTTGT 57.869 32.000 0.00 0.00 39.22 3.32
3526 3577 7.877097 TGATCCAATCAACCCTTTTTAATGTTG 59.123 33.333 0.00 0.00 39.47 3.33
3527 3578 7.972301 TGATCCAATCAACCCTTTTTAATGTT 58.028 30.769 0.00 0.00 36.11 2.71
3528 3579 7.552050 TGATCCAATCAACCCTTTTTAATGT 57.448 32.000 0.00 0.00 36.11 2.71
3529 3580 9.452287 AAATGATCCAATCAACCCTTTTTAATG 57.548 29.630 0.00 0.00 43.50 1.90
3530 3581 9.452287 CAAATGATCCAATCAACCCTTTTTAAT 57.548 29.630 0.00 0.00 43.50 1.40
3531 3582 8.654997 TCAAATGATCCAATCAACCCTTTTTAA 58.345 29.630 0.00 0.00 43.50 1.52
3532 3583 8.200024 TCAAATGATCCAATCAACCCTTTTTA 57.800 30.769 0.00 0.00 43.50 1.52
3533 3584 7.077050 TCAAATGATCCAATCAACCCTTTTT 57.923 32.000 0.00 0.00 43.50 1.94
3534 3585 6.296030 CCTCAAATGATCCAATCAACCCTTTT 60.296 38.462 0.00 0.00 43.50 2.27
3535 3586 5.188359 CCTCAAATGATCCAATCAACCCTTT 59.812 40.000 0.00 0.00 43.50 3.11
3536 3587 4.713321 CCTCAAATGATCCAATCAACCCTT 59.287 41.667 0.00 0.00 43.50 3.95
3537 3588 4.017222 TCCTCAAATGATCCAATCAACCCT 60.017 41.667 0.00 0.00 43.50 4.34
3538 3589 4.280819 TCCTCAAATGATCCAATCAACCC 58.719 43.478 0.00 0.00 43.50 4.11
3539 3590 5.163478 CCTTCCTCAAATGATCCAATCAACC 60.163 44.000 0.00 0.00 43.50 3.77
3540 3591 5.163478 CCCTTCCTCAAATGATCCAATCAAC 60.163 44.000 0.00 0.00 43.50 3.18
3541 3592 4.957954 CCCTTCCTCAAATGATCCAATCAA 59.042 41.667 0.00 0.00 43.50 2.57
3542 3593 4.230272 TCCCTTCCTCAAATGATCCAATCA 59.770 41.667 0.00 0.00 44.55 2.57
3543 3594 4.796606 TCCCTTCCTCAAATGATCCAATC 58.203 43.478 0.00 0.00 0.00 2.67
3544 3595 4.886755 TCCCTTCCTCAAATGATCCAAT 57.113 40.909 0.00 0.00 0.00 3.16
3545 3596 4.344104 GTTCCCTTCCTCAAATGATCCAA 58.656 43.478 0.00 0.00 0.00 3.53
3546 3597 3.309121 GGTTCCCTTCCTCAAATGATCCA 60.309 47.826 0.00 0.00 0.00 3.41
3547 3598 3.291584 GGTTCCCTTCCTCAAATGATCC 58.708 50.000 0.00 0.00 0.00 3.36
3548 3599 3.968265 TGGTTCCCTTCCTCAAATGATC 58.032 45.455 0.00 0.00 0.00 2.92
3549 3600 4.347607 CTTGGTTCCCTTCCTCAAATGAT 58.652 43.478 0.00 0.00 0.00 2.45
3550 3601 3.500289 CCTTGGTTCCCTTCCTCAAATGA 60.500 47.826 0.00 0.00 0.00 2.57
3551 3602 2.827921 CCTTGGTTCCCTTCCTCAAATG 59.172 50.000 0.00 0.00 0.00 2.32
3552 3603 2.721906 TCCTTGGTTCCCTTCCTCAAAT 59.278 45.455 0.00 0.00 0.00 2.32
3553 3604 2.140224 TCCTTGGTTCCCTTCCTCAAA 58.860 47.619 0.00 0.00 0.00 2.69
3554 3605 1.827792 TCCTTGGTTCCCTTCCTCAA 58.172 50.000 0.00 0.00 0.00 3.02
3555 3606 1.827792 TTCCTTGGTTCCCTTCCTCA 58.172 50.000 0.00 0.00 0.00 3.86
3556 3607 2.308866 TGATTCCTTGGTTCCCTTCCTC 59.691 50.000 0.00 0.00 0.00 3.71
3557 3608 2.358258 TGATTCCTTGGTTCCCTTCCT 58.642 47.619 0.00 0.00 0.00 3.36
3558 3609 2.899303 TGATTCCTTGGTTCCCTTCC 57.101 50.000 0.00 0.00 0.00 3.46
3559 3610 9.807921 TTATATTATGATTCCTTGGTTCCCTTC 57.192 33.333 0.00 0.00 0.00 3.46
3560 3611 9.813826 CTTATATTATGATTCCTTGGTTCCCTT 57.186 33.333 0.00 0.00 0.00 3.95
3561 3612 9.182642 TCTTATATTATGATTCCTTGGTTCCCT 57.817 33.333 0.00 0.00 0.00 4.20
3562 3613 9.232473 GTCTTATATTATGATTCCTTGGTTCCC 57.768 37.037 0.00 0.00 0.00 3.97
3563 3614 8.936864 CGTCTTATATTATGATTCCTTGGTTCC 58.063 37.037 0.00 0.00 0.00 3.62
3564 3615 9.490379 ACGTCTTATATTATGATTCCTTGGTTC 57.510 33.333 0.00 0.00 0.00 3.62
3565 3616 9.847224 AACGTCTTATATTATGATTCCTTGGTT 57.153 29.630 0.00 0.00 0.00 3.67
3601 3652 9.973880 TCCCTCTGTCCCATGATATATTATATT 57.026 33.333 0.00 0.00 0.00 1.28
3602 3653 9.612879 CTCCCTCTGTCCCATGATATATTATAT 57.387 37.037 0.00 0.00 0.00 0.86
3603 3654 8.578376 ACTCCCTCTGTCCCATGATATATTATA 58.422 37.037 0.00 0.00 0.00 0.98
3604 3655 7.434201 ACTCCCTCTGTCCCATGATATATTAT 58.566 38.462 0.00 0.00 0.00 1.28
3605 3656 6.815880 ACTCCCTCTGTCCCATGATATATTA 58.184 40.000 0.00 0.00 0.00 0.98
3606 3657 5.669857 ACTCCCTCTGTCCCATGATATATT 58.330 41.667 0.00 0.00 0.00 1.28
3607 3658 5.296909 ACTCCCTCTGTCCCATGATATAT 57.703 43.478 0.00 0.00 0.00 0.86
3608 3659 4.767000 ACTCCCTCTGTCCCATGATATA 57.233 45.455 0.00 0.00 0.00 0.86
3609 3660 3.645053 ACTCCCTCTGTCCCATGATAT 57.355 47.619 0.00 0.00 0.00 1.63
3610 3661 3.467483 AGTACTCCCTCTGTCCCATGATA 59.533 47.826 0.00 0.00 0.00 2.15
3611 3662 2.248686 AGTACTCCCTCTGTCCCATGAT 59.751 50.000 0.00 0.00 0.00 2.45
3612 3663 1.646447 AGTACTCCCTCTGTCCCATGA 59.354 52.381 0.00 0.00 0.00 3.07
3613 3664 2.166907 AGTACTCCCTCTGTCCCATG 57.833 55.000 0.00 0.00 0.00 3.66
3614 3665 2.950990 AAGTACTCCCTCTGTCCCAT 57.049 50.000 0.00 0.00 0.00 4.00
3615 3666 2.715763 AAAGTACTCCCTCTGTCCCA 57.284 50.000 0.00 0.00 0.00 4.37
3633 3684 1.944024 ACTGGTCGCAACATCGAAAAA 59.056 42.857 0.00 0.00 40.43 1.94
3634 3685 1.588674 ACTGGTCGCAACATCGAAAA 58.411 45.000 0.00 0.00 40.43 2.29
3635 3686 1.588674 AACTGGTCGCAACATCGAAA 58.411 45.000 0.00 0.00 40.43 3.46
3636 3687 2.288579 ACTAACTGGTCGCAACATCGAA 60.289 45.455 0.00 0.00 40.43 3.71
3637 3688 1.271379 ACTAACTGGTCGCAACATCGA 59.729 47.619 0.00 0.00 35.95 3.59
3638 3689 1.390123 CACTAACTGGTCGCAACATCG 59.610 52.381 0.00 0.00 0.00 3.84
3639 3690 2.413837 ACACTAACTGGTCGCAACATC 58.586 47.619 0.00 0.00 0.00 3.06
3640 3691 2.543777 ACACTAACTGGTCGCAACAT 57.456 45.000 0.00 0.00 0.00 2.71
3641 3692 2.319136 AACACTAACTGGTCGCAACA 57.681 45.000 0.00 0.00 0.00 3.33
3642 3693 3.645884 TCTAACACTAACTGGTCGCAAC 58.354 45.455 0.00 0.00 0.00 4.17
3643 3694 4.530710 ATCTAACACTAACTGGTCGCAA 57.469 40.909 0.00 0.00 0.00 4.85
3644 3695 4.242475 CAATCTAACACTAACTGGTCGCA 58.758 43.478 0.00 0.00 0.00 5.10
3645 3696 3.617263 CCAATCTAACACTAACTGGTCGC 59.383 47.826 0.00 0.00 0.00 5.19
3646 3697 4.181578 CCCAATCTAACACTAACTGGTCG 58.818 47.826 0.00 0.00 0.00 4.79
3647 3698 5.161943 ACCCAATCTAACACTAACTGGTC 57.838 43.478 0.00 0.00 0.00 4.02
3648 3699 4.595781 TGACCCAATCTAACACTAACTGGT 59.404 41.667 0.00 0.00 0.00 4.00
3649 3700 5.160607 TGACCCAATCTAACACTAACTGG 57.839 43.478 0.00 0.00 0.00 4.00
3650 3701 7.362056 CCAAATGACCCAATCTAACACTAACTG 60.362 40.741 0.00 0.00 0.00 3.16
3651 3702 6.659242 CCAAATGACCCAATCTAACACTAACT 59.341 38.462 0.00 0.00 0.00 2.24
3652 3703 6.657541 TCCAAATGACCCAATCTAACACTAAC 59.342 38.462 0.00 0.00 0.00 2.34
3653 3704 6.785076 TCCAAATGACCCAATCTAACACTAA 58.215 36.000 0.00 0.00 0.00 2.24
3654 3705 6.214615 TCTCCAAATGACCCAATCTAACACTA 59.785 38.462 0.00 0.00 0.00 2.74
3655 3706 5.014123 TCTCCAAATGACCCAATCTAACACT 59.986 40.000 0.00 0.00 0.00 3.55
3656 3707 5.253330 TCTCCAAATGACCCAATCTAACAC 58.747 41.667 0.00 0.00 0.00 3.32
3657 3708 5.512942 TCTCCAAATGACCCAATCTAACA 57.487 39.130 0.00 0.00 0.00 2.41
3658 3709 5.358160 CCTTCTCCAAATGACCCAATCTAAC 59.642 44.000 0.00 0.00 0.00 2.34
3659 3710 5.509498 CCTTCTCCAAATGACCCAATCTAA 58.491 41.667 0.00 0.00 0.00 2.10
3660 3711 4.079787 CCCTTCTCCAAATGACCCAATCTA 60.080 45.833 0.00 0.00 0.00 1.98
3661 3712 3.309410 CCCTTCTCCAAATGACCCAATCT 60.309 47.826 0.00 0.00 0.00 2.40
3662 3713 3.026694 CCCTTCTCCAAATGACCCAATC 58.973 50.000 0.00 0.00 0.00 2.67
3663 3714 2.654385 TCCCTTCTCCAAATGACCCAAT 59.346 45.455 0.00 0.00 0.00 3.16
3664 3715 2.069775 TCCCTTCTCCAAATGACCCAA 58.930 47.619 0.00 0.00 0.00 4.12
3665 3716 1.753903 TCCCTTCTCCAAATGACCCA 58.246 50.000 0.00 0.00 0.00 4.51
3666 3717 2.447443 GTTCCCTTCTCCAAATGACCC 58.553 52.381 0.00 0.00 0.00 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.