Multiple sequence alignment - TraesCS2B01G298500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G298500 chr2B 100.000 5868 0 0 1813 7680 418267066 418272933 0.000000e+00 10837.0
1 TraesCS2B01G298500 chr2B 100.000 1481 0 0 1 1481 418265254 418266734 0.000000e+00 2736.0
2 TraesCS2B01G298500 chr2B 83.206 655 96 12 279 925 697520278 697519630 8.590000e-164 588.0
3 TraesCS2B01G298500 chr2B 93.548 341 17 2 6771 7107 418274043 418274382 3.200000e-138 503.0
4 TraesCS2B01G298500 chr2B 92.962 341 18 3 6771 7105 250640538 250640198 6.920000e-135 492.0
5 TraesCS2B01G298500 chr2B 81.373 408 38 18 6963 7344 692531073 692530678 1.620000e-76 298.0
6 TraesCS2B01G298500 chr2B 97.403 154 4 0 2689 2842 418267789 418267942 5.910000e-66 263.0
7 TraesCS2B01G298500 chr2B 97.403 154 4 0 2536 2689 418267942 418268095 5.910000e-66 263.0
8 TraesCS2B01G298500 chr2B 90.291 103 7 1 4535 4634 161412221 161412323 1.740000e-26 132.0
9 TraesCS2B01G298500 chr2D 94.403 4127 159 29 2689 6771 351971503 351975601 0.000000e+00 6276.0
10 TraesCS2B01G298500 chr2D 91.505 1495 84 12 1 1465 351968523 351970004 0.000000e+00 2017.0
11 TraesCS2B01G298500 chr2D 98.020 606 8 2 1825 2430 351970080 351970681 0.000000e+00 1050.0
12 TraesCS2B01G298500 chr2D 95.307 277 12 1 2413 2689 351971381 351971656 9.150000e-119 438.0
13 TraesCS2B01G298500 chr2D 81.818 407 35 20 6963 7344 37364848 37364456 9.680000e-79 305.0
14 TraesCS2B01G298500 chr2A 93.680 2231 101 17 2689 4891 469787819 469790037 0.000000e+00 3302.0
15 TraesCS2B01G298500 chr2A 95.843 866 30 4 1825 2689 469787112 469787972 0.000000e+00 1395.0
16 TraesCS2B01G298500 chr2A 95.918 833 28 3 5940 6771 469792025 469792852 0.000000e+00 1345.0
17 TraesCS2B01G298500 chr2A 94.048 840 33 7 4890 5713 469790199 469791037 0.000000e+00 1258.0
18 TraesCS2B01G298500 chr2A 92.460 809 53 3 1 806 469784845 469785648 0.000000e+00 1149.0
19 TraesCS2B01G298500 chr2A 91.286 700 28 9 792 1463 469786367 469787061 0.000000e+00 924.0
20 TraesCS2B01G298500 chr2A 94.492 236 12 1 5708 5942 469791224 469791459 5.660000e-96 363.0
21 TraesCS2B01G298500 chr7D 85.216 947 109 14 1 925 552505194 552504257 0.000000e+00 944.0
22 TraesCS2B01G298500 chr7D 82.486 925 120 25 24 926 7083077 7082173 0.000000e+00 773.0
23 TraesCS2B01G298500 chr7D 84.795 171 15 4 7495 7665 154946691 154946532 2.220000e-35 161.0
24 TraesCS2B01G298500 chr3B 97.022 403 12 0 7278 7680 662443929 662444331 0.000000e+00 678.0
25 TraesCS2B01G298500 chr3B 89.815 540 23 16 6771 7281 662443055 662443591 0.000000e+00 664.0
26 TraesCS2B01G298500 chr3B 92.941 340 19 2 6771 7105 410747393 410747054 2.490000e-134 490.0
27 TraesCS2B01G298500 chr3B 91.071 112 9 1 1252 1362 742445855 742445744 4.800000e-32 150.0
28 TraesCS2B01G298500 chr4B 86.799 606 39 16 6769 7344 2144810 2145404 8.400000e-179 638.0
29 TraesCS2B01G298500 chr4B 93.529 340 18 1 6770 7105 180878951 180879290 3.200000e-138 503.0
30 TraesCS2B01G298500 chr4B 93.255 341 17 4 6770 7105 582368656 582368995 1.490000e-136 497.0
31 TraesCS2B01G298500 chr4B 99.020 102 1 0 7488 7589 63803139 63803038 4.730000e-42 183.0
32 TraesCS2B01G298500 chr4B 86.957 115 10 3 4531 4642 362839968 362839856 2.910000e-24 124.0
33 TraesCS2B01G298500 chr5B 93.842 341 15 3 6771 7105 600548255 600548595 6.880000e-140 508.0
34 TraesCS2B01G298500 chr6B 93.824 340 16 2 6771 7105 256339856 256340195 2.470000e-139 507.0
35 TraesCS2B01G298500 chr6B 96.094 256 10 0 7425 7680 272019734 272019479 1.190000e-112 418.0
36 TraesCS2B01G298500 chr6B 82.443 393 31 17 6977 7344 526004104 526003725 7.480000e-80 309.0
37 TraesCS2B01G298500 chr7A 83.126 563 73 10 110 652 7930396 7929836 1.930000e-135 494.0
38 TraesCS2B01G298500 chr7A 79.657 408 44 24 6963 7344 497854489 497854883 2.750000e-64 257.0
39 TraesCS2B01G298500 chr1B 92.982 342 18 3 6771 7106 324793079 324792738 1.930000e-135 494.0
40 TraesCS2B01G298500 chr1B 79.947 379 39 21 6992 7344 2047183 2047550 2.140000e-60 244.0
41 TraesCS2B01G298500 chr3D 92.941 340 17 3 6771 7105 35674314 35673977 8.960000e-134 488.0
42 TraesCS2B01G298500 chr3D 83.626 171 17 4 7495 7665 11604316 11604475 4.800000e-32 150.0
43 TraesCS2B01G298500 chr7B 95.703 256 8 1 7425 7680 693283796 693283544 7.170000e-110 409.0
44 TraesCS2B01G298500 chr7B 94.902 255 10 1 7426 7680 551497710 551497961 5.590000e-106 396.0
45 TraesCS2B01G298500 chr6D 81.572 407 37 20 6963 7344 51399610 51400003 1.250000e-77 302.0
46 TraesCS2B01G298500 chr6D 88.785 107 8 2 4535 4637 90111150 90111256 2.250000e-25 128.0
47 TraesCS2B01G298500 chr6D 88.288 111 8 3 4535 4642 302113644 302113752 2.250000e-25 128.0
48 TraesCS2B01G298500 chr5D 82.044 362 39 13 7111 7450 69983805 69983448 1.260000e-72 285.0
49 TraesCS2B01G298500 chr5D 86.885 122 9 5 4524 4642 371860601 371860718 6.250000e-26 130.0
50 TraesCS2B01G298500 chr5D 97.297 37 1 0 932 968 435490174 435490210 6.430000e-06 63.9
51 TraesCS2B01G298500 chr5A 86.404 228 20 8 7454 7680 703567246 703567029 9.960000e-59 239.0
52 TraesCS2B01G298500 chr5A 85.965 228 21 8 7454 7680 703615441 703615224 4.630000e-57 233.0
53 TraesCS2B01G298500 chr3A 83.832 167 15 3 7489 7654 575166716 575166871 1.730000e-31 148.0
54 TraesCS2B01G298500 chr3A 96.610 59 2 0 7377 7435 729726571 729726629 1.760000e-16 99.0
55 TraesCS2B01G298500 chr4A 88.785 107 12 0 4534 4640 581333715 581333609 1.740000e-26 132.0
56 TraesCS2B01G298500 chr1D 87.069 116 11 2 4535 4646 407673117 407673002 2.250000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G298500 chr2B 418265254 418272933 7679 False 6786.500000 10837 100.00000 1 7680 2 chr2B.!!$F3 7679
1 TraesCS2B01G298500 chr2B 697519630 697520278 648 True 588.000000 588 83.20600 279 925 1 chr2B.!!$R3 646
2 TraesCS2B01G298500 chr2D 351968523 351975601 7078 False 2445.250000 6276 94.80875 1 6771 4 chr2D.!!$F1 6770
3 TraesCS2B01G298500 chr2A 469784845 469792852 8007 False 1390.857143 3302 93.96100 1 6771 7 chr2A.!!$F1 6770
4 TraesCS2B01G298500 chr7D 552504257 552505194 937 True 944.000000 944 85.21600 1 925 1 chr7D.!!$R3 924
5 TraesCS2B01G298500 chr7D 7082173 7083077 904 True 773.000000 773 82.48600 24 926 1 chr7D.!!$R1 902
6 TraesCS2B01G298500 chr3B 662443055 662444331 1276 False 671.000000 678 93.41850 6771 7680 2 chr3B.!!$F1 909
7 TraesCS2B01G298500 chr4B 2144810 2145404 594 False 638.000000 638 86.79900 6769 7344 1 chr4B.!!$F1 575
8 TraesCS2B01G298500 chr7A 7929836 7930396 560 True 494.000000 494 83.12600 110 652 1 chr7A.!!$R1 542

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
660 682 0.107897 TCGCCAGTCGCCATTGTTAT 60.108 50.000 0.00 0.00 38.27 1.89 F
712 734 0.394565 GAGTGCTCAAGGTGGACTGT 59.605 55.000 0.00 0.00 36.26 3.55 F
743 766 1.203052 GTTGGAACGGTCGATGTAGGA 59.797 52.381 0.00 0.00 0.00 2.94 F
770 793 1.306482 CCTCCTGGGCCTCTGAAGA 60.306 63.158 4.53 0.00 0.00 2.87 F
2492 4022 0.396811 ACTTCTTCCCAACCTCGTGG 59.603 55.000 0.99 0.99 38.51 4.94 F
3318 4853 0.241749 CTCAATGCCGCTTTTGAGCA 59.758 50.000 17.83 0.00 41.53 4.26 F
3411 4946 0.458543 CGAGTTGGATCACAGTCCGG 60.459 60.000 0.00 0.00 41.35 5.14 F
4287 5834 0.478507 GGAGAGGAGAGAGGGAGAGG 59.521 65.000 0.00 0.00 0.00 3.69 F
4288 5835 0.478507 GAGAGGAGAGAGGGAGAGGG 59.521 65.000 0.00 0.00 0.00 4.30 F
4693 6266 0.905357 ACTAAGAGGTGGAGCGCATT 59.095 50.000 11.47 0.00 0.00 3.56 F
6599 9112 1.922447 TGGAAGGGGTAGCACATGATT 59.078 47.619 0.00 0.00 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1812 2624 1.584724 TCATCAAACTCCCTCCCTCC 58.415 55.000 0.00 0.00 0.00 4.30 R
1813 2625 2.774234 TCATCATCAAACTCCCTCCCTC 59.226 50.000 0.00 0.00 0.00 4.30 R
2462 3992 2.811431 TGGGAAGAAGTACAAACATGCG 59.189 45.455 0.00 0.00 0.00 4.73 R
2767 4297 3.390175 ACTACCCAGTATGCAGAGACT 57.610 47.619 0.00 0.00 31.45 3.24 R
4277 5824 0.047176 TCCTCTCTCCCTCTCCCTCT 59.953 60.000 0.00 0.00 0.00 3.69 R
5270 7011 0.110010 GAACAGCGCCAGAAAGCTTC 60.110 55.000 2.29 0.00 42.52 3.86 R
5549 7300 5.046529 CACAGGTGCTAGAGTAAATGCTAG 58.953 45.833 0.00 0.00 37.69 3.42 R
6209 8722 2.115427 TGTAAGCCGGAGATGGAATGA 58.885 47.619 5.05 0.00 0.00 2.57 R
6409 8922 3.768215 TGAAATCATTGCTTGCACCCATA 59.232 39.130 0.00 0.00 0.00 2.74 R
6625 9138 0.032678 ACAGGATTATCGCAGCTCCG 59.967 55.000 0.00 0.00 32.87 4.63 R
7465 10351 0.174389 TCACGATTGAGGAGCAGCTC 59.826 55.000 14.69 14.69 0.00 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.079558 AGGTTTAGGATCTGTCAATGCCAT 60.080 41.667 0.00 0.00 0.00 4.40
99 100 7.044798 GCACTATCTTCTTCTTCATGGTACTT 58.955 38.462 0.00 0.00 0.00 2.24
132 133 4.905429 TCTGCAACTACACCAACACATAT 58.095 39.130 0.00 0.00 0.00 1.78
200 201 4.015084 CAGGCCATTGAGAAGTTCTGAAT 58.985 43.478 10.90 11.14 30.39 2.57
226 227 7.607991 TGAGGAACCAGAAAATAGAACTTCATC 59.392 37.037 0.00 0.00 0.00 2.92
248 263 2.036098 CCTTCAGTGCCATGGCCA 59.964 61.111 33.44 18.73 41.09 5.36
287 302 6.524586 GCAACAATTTGTTCCTTTCTATCTCG 59.475 38.462 11.78 0.00 38.77 4.04
312 327 0.402121 AGCTTCTTCTCCCCCAACAC 59.598 55.000 0.00 0.00 0.00 3.32
345 360 2.466867 CCAATTCGGACGAACTGGG 58.533 57.895 22.83 14.36 44.81 4.45
377 394 6.633500 TGGAAACGAACATTCAAAATCTCT 57.367 33.333 0.00 0.00 0.00 3.10
381 398 7.119262 GGAAACGAACATTCAAAATCTCTCCTA 59.881 37.037 0.00 0.00 0.00 2.94
659 681 1.017177 GTCGCCAGTCGCCATTGTTA 61.017 55.000 0.00 0.00 38.27 2.41
660 682 0.107897 TCGCCAGTCGCCATTGTTAT 60.108 50.000 0.00 0.00 38.27 1.89
712 734 0.394565 GAGTGCTCAAGGTGGACTGT 59.605 55.000 0.00 0.00 36.26 3.55
743 766 1.203052 GTTGGAACGGTCGATGTAGGA 59.797 52.381 0.00 0.00 0.00 2.94
770 793 1.306482 CCTCCTGGGCCTCTGAAGA 60.306 63.158 4.53 0.00 0.00 2.87
775 798 3.394836 GGGCCTCTGAAGAGCCGT 61.395 66.667 0.84 0.00 40.75 5.68
841 1597 2.520741 AACCAACCCCAGCAACGG 60.521 61.111 0.00 0.00 0.00 4.44
855 1611 3.876589 AACGGCTTGCCACGTCGAT 62.877 57.895 12.45 0.00 43.31 3.59
863 1619 1.694844 TGCCACGTCGATAATCCCTA 58.305 50.000 0.00 0.00 0.00 3.53
882 1638 3.117657 TTTGGCACACGATCCCAAA 57.882 47.368 8.53 8.53 44.02 3.28
887 1643 2.156098 GGCACACGATCCCAAAGTTTA 58.844 47.619 0.00 0.00 0.00 2.01
892 1648 6.383415 GCACACGATCCCAAAGTTTAATTTA 58.617 36.000 0.00 0.00 0.00 1.40
930 1713 2.597510 GGGTGCAAACGAGGGCTT 60.598 61.111 0.00 0.00 0.00 4.35
992 1778 3.634504 CATCATCCCAATCCTCACCAAA 58.365 45.455 0.00 0.00 0.00 3.28
993 1779 4.220724 CATCATCCCAATCCTCACCAAAT 58.779 43.478 0.00 0.00 0.00 2.32
994 1780 3.634504 TCATCCCAATCCTCACCAAATG 58.365 45.455 0.00 0.00 0.00 2.32
995 1781 1.851304 TCCCAATCCTCACCAAATGC 58.149 50.000 0.00 0.00 0.00 3.56
996 1782 1.358787 TCCCAATCCTCACCAAATGCT 59.641 47.619 0.00 0.00 0.00 3.79
997 1783 2.580322 TCCCAATCCTCACCAAATGCTA 59.420 45.455 0.00 0.00 0.00 3.49
998 1784 2.954318 CCCAATCCTCACCAAATGCTAG 59.046 50.000 0.00 0.00 0.00 3.42
999 1785 3.624777 CCAATCCTCACCAAATGCTAGT 58.375 45.455 0.00 0.00 0.00 2.57
1465 2253 3.641437 TCCAGAAACCGAAAATGCAAG 57.359 42.857 0.00 0.00 0.00 4.01
1466 2254 2.955660 TCCAGAAACCGAAAATGCAAGT 59.044 40.909 0.00 0.00 0.00 3.16
1858 2670 5.341872 TGCTGTTGCATAGCCAATTAAAT 57.658 34.783 17.67 0.00 45.31 1.40
1949 2761 2.679450 TGCAGCAATTGTGAGCATTTC 58.321 42.857 14.61 0.00 33.88 2.17
2122 2935 5.767816 AATTTATGTTATTCTGCGACCCC 57.232 39.130 0.00 0.00 0.00 4.95
2226 3039 6.886459 ACTTCAGCAATGGTTGTATCATACTT 59.114 34.615 0.00 0.00 0.00 2.24
2334 3147 2.663196 GAGGTTCCTGTCCCACCG 59.337 66.667 0.00 0.00 35.54 4.94
2462 3992 1.986575 GAGCGTTCTTGCCATGCTCC 61.987 60.000 3.18 0.00 44.46 4.70
2492 4022 0.396811 ACTTCTTCCCAACCTCGTGG 59.603 55.000 0.99 0.99 38.51 4.94
2594 4124 9.891828 TGTTAACTGCATAAAGATGTACTTTTG 57.108 29.630 7.22 0.00 45.22 2.44
2617 4147 6.235664 TGACCAAGGTTCAAGGTTATAAGTC 58.764 40.000 0.00 0.00 35.36 3.01
2618 4148 6.043938 TGACCAAGGTTCAAGGTTATAAGTCT 59.956 38.462 0.00 0.00 35.36 3.24
2619 4149 6.473758 ACCAAGGTTCAAGGTTATAAGTCTC 58.526 40.000 0.00 0.00 29.58 3.36
2620 4150 6.272558 ACCAAGGTTCAAGGTTATAAGTCTCT 59.727 38.462 0.00 0.00 29.58 3.10
2661 4191 5.652452 GGTTTTCTTACCAGCAGTATTGGAT 59.348 40.000 0.00 0.00 39.08 3.41
2662 4192 6.183360 GGTTTTCTTACCAGCAGTATTGGATC 60.183 42.308 0.00 0.00 39.08 3.36
2663 4193 5.692115 TTCTTACCAGCAGTATTGGATCA 57.308 39.130 0.00 0.00 39.08 2.92
2664 4194 5.894298 TCTTACCAGCAGTATTGGATCAT 57.106 39.130 0.00 0.00 39.08 2.45
2665 4195 6.994421 TCTTACCAGCAGTATTGGATCATA 57.006 37.500 0.00 0.00 39.08 2.15
2666 4196 7.559335 TCTTACCAGCAGTATTGGATCATAT 57.441 36.000 0.00 0.00 39.08 1.78
2667 4197 8.664669 TCTTACCAGCAGTATTGGATCATATA 57.335 34.615 0.00 0.00 39.08 0.86
2668 4198 8.531982 TCTTACCAGCAGTATTGGATCATATAC 58.468 37.037 0.00 1.84 39.08 1.47
2669 4199 6.942163 ACCAGCAGTATTGGATCATATACT 57.058 37.500 11.26 11.26 37.92 2.12
2705 4235 7.290857 TCACAATAACGACTATCTTCTTTGC 57.709 36.000 0.00 0.00 0.00 3.68
2706 4236 7.097192 TCACAATAACGACTATCTTCTTTGCT 58.903 34.615 0.00 0.00 0.00 3.91
2707 4237 8.248253 TCACAATAACGACTATCTTCTTTGCTA 58.752 33.333 0.00 0.00 0.00 3.49
2708 4238 8.869897 CACAATAACGACTATCTTCTTTGCTAA 58.130 33.333 0.00 0.00 0.00 3.09
2709 4239 8.870879 ACAATAACGACTATCTTCTTTGCTAAC 58.129 33.333 0.00 0.00 0.00 2.34
2710 4240 8.869897 CAATAACGACTATCTTCTTTGCTAACA 58.130 33.333 0.00 0.00 0.00 2.41
2711 4241 9.601217 AATAACGACTATCTTCTTTGCTAACAT 57.399 29.630 0.00 0.00 0.00 2.71
2712 4242 7.907214 AACGACTATCTTCTTTGCTAACATT 57.093 32.000 0.00 0.00 0.00 2.71
2713 4243 7.527084 ACGACTATCTTCTTTGCTAACATTC 57.473 36.000 0.00 0.00 0.00 2.67
2714 4244 7.097192 ACGACTATCTTCTTTGCTAACATTCA 58.903 34.615 0.00 0.00 0.00 2.57
2715 4245 7.766278 ACGACTATCTTCTTTGCTAACATTCAT 59.234 33.333 0.00 0.00 0.00 2.57
2716 4246 9.249457 CGACTATCTTCTTTGCTAACATTCATA 57.751 33.333 0.00 0.00 0.00 2.15
2725 4255 9.230122 TCTTTGCTAACATTCATAGAATTGTCA 57.770 29.630 0.00 0.00 0.00 3.58
2726 4256 9.844790 CTTTGCTAACATTCATAGAATTGTCAA 57.155 29.630 0.00 0.00 0.00 3.18
2727 4257 9.624697 TTTGCTAACATTCATAGAATTGTCAAC 57.375 29.630 0.00 0.00 0.00 3.18
2728 4258 8.565896 TGCTAACATTCATAGAATTGTCAACT 57.434 30.769 0.00 0.00 0.00 3.16
2729 4259 8.453320 TGCTAACATTCATAGAATTGTCAACTG 58.547 33.333 0.00 0.00 0.00 3.16
2730 4260 7.430502 GCTAACATTCATAGAATTGTCAACTGC 59.569 37.037 0.00 0.00 0.00 4.40
2731 4261 6.822667 ACATTCATAGAATTGTCAACTGCA 57.177 33.333 0.00 0.00 0.00 4.41
2732 4262 7.400599 ACATTCATAGAATTGTCAACTGCAT 57.599 32.000 0.00 0.00 0.00 3.96
2733 4263 8.510243 ACATTCATAGAATTGTCAACTGCATA 57.490 30.769 0.00 0.00 0.00 3.14
2734 4264 8.959548 ACATTCATAGAATTGTCAACTGCATAA 58.040 29.630 0.00 0.00 0.00 1.90
2735 4265 9.791820 CATTCATAGAATTGTCAACTGCATAAA 57.208 29.630 0.00 0.00 0.00 1.40
2737 4267 8.791327 TCATAGAATTGTCAACTGCATAAAGA 57.209 30.769 0.00 0.00 0.00 2.52
2738 4268 9.399797 TCATAGAATTGTCAACTGCATAAAGAT 57.600 29.630 0.00 0.00 0.00 2.40
2739 4269 9.447040 CATAGAATTGTCAACTGCATAAAGATG 57.553 33.333 0.00 0.00 36.02 2.90
2740 4270 7.458409 AGAATTGTCAACTGCATAAAGATGT 57.542 32.000 0.00 0.00 35.30 3.06
2741 4271 8.565896 AGAATTGTCAACTGCATAAAGATGTA 57.434 30.769 0.00 0.00 35.30 2.29
2742 4272 8.454106 AGAATTGTCAACTGCATAAAGATGTAC 58.546 33.333 0.00 0.00 35.30 2.90
2743 4273 7.928307 ATTGTCAACTGCATAAAGATGTACT 57.072 32.000 0.00 0.00 35.30 2.73
2744 4274 7.744087 TTGTCAACTGCATAAAGATGTACTT 57.256 32.000 0.00 0.00 40.98 2.24
2746 4276 8.165239 TGTCAACTGCATAAAGATGTACTTTT 57.835 30.769 0.00 0.00 45.22 2.27
2747 4277 8.075574 TGTCAACTGCATAAAGATGTACTTTTG 58.924 33.333 0.00 0.00 45.22 2.44
2748 4278 8.289618 GTCAACTGCATAAAGATGTACTTTTGA 58.710 33.333 0.00 0.00 45.22 2.69
2749 4279 8.289618 TCAACTGCATAAAGATGTACTTTTGAC 58.710 33.333 0.00 0.00 45.22 3.18
2750 4280 7.145932 ACTGCATAAAGATGTACTTTTGACC 57.854 36.000 0.00 0.00 45.22 4.02
2751 4281 6.714810 ACTGCATAAAGATGTACTTTTGACCA 59.285 34.615 0.00 0.00 45.22 4.02
2752 4282 7.230510 ACTGCATAAAGATGTACTTTTGACCAA 59.769 33.333 0.00 0.00 45.22 3.67
2753 4283 7.592938 TGCATAAAGATGTACTTTTGACCAAG 58.407 34.615 0.00 0.00 45.22 3.61
2754 4284 7.446931 TGCATAAAGATGTACTTTTGACCAAGA 59.553 33.333 0.00 0.00 45.22 3.02
2755 4285 8.462016 GCATAAAGATGTACTTTTGACCAAGAT 58.538 33.333 0.00 0.00 45.22 2.40
2758 4288 8.463930 AAAGATGTACTTTTGACCAAGATTCA 57.536 30.769 0.00 0.00 45.22 2.57
2759 4289 8.463930 AAGATGTACTTTTGACCAAGATTCAA 57.536 30.769 0.00 0.00 34.94 2.69
2760 4290 8.103948 AGATGTACTTTTGACCAAGATTCAAG 57.896 34.615 0.00 0.00 34.50 3.02
2761 4291 6.633500 TGTACTTTTGACCAAGATTCAAGG 57.367 37.500 0.00 0.00 34.50 3.61
2762 4292 6.126409 TGTACTTTTGACCAAGATTCAAGGT 58.874 36.000 0.00 0.24 38.63 3.50
2763 4293 6.605594 TGTACTTTTGACCAAGATTCAAGGTT 59.394 34.615 0.00 0.00 35.36 3.50
2764 4294 7.776030 TGTACTTTTGACCAAGATTCAAGGTTA 59.224 33.333 0.00 0.00 35.36 2.85
2765 4295 7.839680 ACTTTTGACCAAGATTCAAGGTTAT 57.160 32.000 2.15 0.00 35.36 1.89
2766 4296 8.934023 ACTTTTGACCAAGATTCAAGGTTATA 57.066 30.769 2.15 0.00 35.36 0.98
2767 4297 9.362151 ACTTTTGACCAAGATTCAAGGTTATAA 57.638 29.630 2.15 0.39 35.36 0.98
2768 4298 9.846248 CTTTTGACCAAGATTCAAGGTTATAAG 57.154 33.333 2.15 5.33 35.36 1.73
2769 4299 8.934023 TTTGACCAAGATTCAAGGTTATAAGT 57.066 30.769 2.15 0.00 35.36 2.24
2770 4300 8.561738 TTGACCAAGATTCAAGGTTATAAGTC 57.438 34.615 2.15 0.00 35.36 3.01
2771 4301 7.918076 TGACCAAGATTCAAGGTTATAAGTCT 58.082 34.615 2.15 0.00 35.36 3.24
2772 4302 8.041323 TGACCAAGATTCAAGGTTATAAGTCTC 58.959 37.037 2.15 0.00 35.36 3.36
2773 4303 8.152023 ACCAAGATTCAAGGTTATAAGTCTCT 57.848 34.615 0.00 0.00 29.58 3.10
2774 4304 8.043710 ACCAAGATTCAAGGTTATAAGTCTCTG 58.956 37.037 0.00 0.00 29.58 3.35
2775 4305 7.011857 CCAAGATTCAAGGTTATAAGTCTCTGC 59.988 40.741 0.00 0.00 0.00 4.26
2776 4306 7.187824 AGATTCAAGGTTATAAGTCTCTGCA 57.812 36.000 0.00 0.00 0.00 4.41
2777 4307 7.800092 AGATTCAAGGTTATAAGTCTCTGCAT 58.200 34.615 0.00 0.00 0.00 3.96
2778 4308 8.928448 AGATTCAAGGTTATAAGTCTCTGCATA 58.072 33.333 0.00 0.00 0.00 3.14
2779 4309 8.894768 ATTCAAGGTTATAAGTCTCTGCATAC 57.105 34.615 0.00 0.00 0.00 2.39
2780 4310 7.661536 TCAAGGTTATAAGTCTCTGCATACT 57.338 36.000 0.00 0.00 0.00 2.12
2781 4311 7.492524 TCAAGGTTATAAGTCTCTGCATACTG 58.507 38.462 0.00 0.00 0.00 2.74
2782 4312 6.412362 AGGTTATAAGTCTCTGCATACTGG 57.588 41.667 0.00 0.00 0.00 4.00
2783 4313 5.305644 AGGTTATAAGTCTCTGCATACTGGG 59.694 44.000 0.00 0.00 0.00 4.45
2784 4314 5.070580 GGTTATAAGTCTCTGCATACTGGGT 59.929 44.000 0.00 0.00 0.00 4.51
2785 4315 6.267014 GGTTATAAGTCTCTGCATACTGGGTA 59.733 42.308 0.00 0.00 0.00 3.69
2786 4316 7.371936 GTTATAAGTCTCTGCATACTGGGTAG 58.628 42.308 0.00 0.00 0.00 3.18
2787 4317 3.390175 AGTCTCTGCATACTGGGTAGT 57.610 47.619 0.00 0.00 40.99 2.73
2788 4318 4.521536 AGTCTCTGCATACTGGGTAGTA 57.478 45.455 0.00 0.00 43.19 1.82
2801 4331 6.058553 ACTGGGTAGTATGGTTTTCTTACC 57.941 41.667 0.00 0.00 34.74 2.85
2802 4332 6.730038 TACTGGGTAGTATGGTTTTCTTACCA 59.270 38.462 0.00 0.00 43.83 3.25
2803 4333 7.093201 TACTGGGTAGTATGGTTTTCTTACCAG 60.093 40.741 0.00 0.00 43.40 4.00
2811 4341 5.957842 TGGTTTTCTTACCAGCAGTATTG 57.042 39.130 0.00 0.00 43.14 1.90
2812 4342 4.764823 TGGTTTTCTTACCAGCAGTATTGG 59.235 41.667 0.00 0.00 43.14 3.16
2813 4343 5.007682 GGTTTTCTTACCAGCAGTATTGGA 58.992 41.667 0.00 0.00 39.08 3.53
2819 4349 7.559335 TCTTACCAGCAGTATTGGATCATAT 57.441 36.000 0.00 0.00 39.08 1.78
2931 4461 8.608185 ATCCAACCCAATTATGTAGACAAATT 57.392 30.769 0.00 0.00 0.00 1.82
2932 4462 8.062065 TCCAACCCAATTATGTAGACAAATTC 57.938 34.615 0.00 0.00 0.00 2.17
2935 4465 7.931578 ACCCAATTATGTAGACAAATTCGAA 57.068 32.000 0.00 0.00 0.00 3.71
3009 4539 4.458989 TCAAAAGCATACACATGGGAAGAC 59.541 41.667 0.00 0.00 32.36 3.01
3010 4540 4.307032 AAAGCATACACATGGGAAGACT 57.693 40.909 0.00 0.00 32.36 3.24
3027 4557 4.286297 AGACTGCATAAACTGGCAACTA 57.714 40.909 0.00 0.00 39.93 2.24
3046 4576 6.990349 GCAACTAATAGTGTATTAGAAGGCCA 59.010 38.462 16.94 0.00 46.71 5.36
3131 4661 2.229792 AGCTCATTCGGCTTTGAACAA 58.770 42.857 0.00 0.00 36.56 2.83
3196 4726 3.239464 TGCTGAGGCAGGACAACA 58.761 55.556 0.00 0.00 44.28 3.33
3207 4737 3.432326 GGCAGGACAACAGGAGTAATAGG 60.432 52.174 0.00 0.00 0.00 2.57
3216 4746 6.206829 ACAACAGGAGTAATAGGCTTCAAAAC 59.793 38.462 0.00 0.00 0.00 2.43
3248 4778 4.142622 ACATTGCCACATACAAAGATGACG 60.143 41.667 0.00 0.00 0.00 4.35
3253 4783 4.494484 CCACATACAAAGATGACGACTCA 58.506 43.478 0.00 0.00 0.00 3.41
3263 4793 5.078411 AGATGACGACTCATTTACAAGCT 57.922 39.130 0.00 0.00 37.24 3.74
3284 4814 4.677779 GCTTTTTCTGCAGAACCAAAGACA 60.678 41.667 35.98 18.94 35.47 3.41
3318 4853 0.241749 CTCAATGCCGCTTTTGAGCA 59.758 50.000 17.83 0.00 41.53 4.26
3352 4887 2.341846 TTTTGTCCTCAGTGTGGGTC 57.658 50.000 11.25 6.01 0.00 4.46
3411 4946 0.458543 CGAGTTGGATCACAGTCCGG 60.459 60.000 0.00 0.00 41.35 5.14
3426 4961 0.918983 TCCGGCCAAGATCCTTTCAT 59.081 50.000 2.24 0.00 0.00 2.57
3472 5007 7.999545 TCAGTATTATAGAGTGCTGGTAGAGTT 59.000 37.037 0.00 0.00 0.00 3.01
3527 5062 7.151308 CCATGGTTTAGACATGCTAACAAAAA 58.849 34.615 2.57 0.00 43.29 1.94
3548 5083 5.793034 AACTAGGTCTTACTCCCTCTACA 57.207 43.478 0.00 0.00 32.08 2.74
3552 5087 5.475398 AGGTCTTACTCCCTCTACAAGAT 57.525 43.478 0.00 0.00 0.00 2.40
3576 5111 0.679640 TAAGGTGCCCATGCTTTCCG 60.680 55.000 0.00 0.00 38.71 4.30
3790 5325 7.460214 TCAACAGAGGGGGTATTACATAAAT 57.540 36.000 0.00 0.00 0.00 1.40
3794 5329 8.577164 ACAGAGGGGGTATTACATAAATAACT 57.423 34.615 0.00 0.00 37.80 2.24
3807 5342 7.100458 ACATAAATAACTGATCCTTTGGCAC 57.900 36.000 0.00 0.00 0.00 5.01
3812 5347 4.574674 AACTGATCCTTTGGCACAGATA 57.425 40.909 1.35 0.00 42.39 1.98
3819 5354 8.359875 TGATCCTTTGGCACAGATAAAAATTA 57.640 30.769 1.35 0.00 42.39 1.40
3902 5444 6.220726 AGCACACAAACAGATAACCTTTTT 57.779 33.333 0.00 0.00 0.00 1.94
3905 5447 5.983118 CACACAAACAGATAACCTTTTTCCC 59.017 40.000 0.00 0.00 0.00 3.97
3906 5448 5.069914 ACACAAACAGATAACCTTTTTCCCC 59.930 40.000 0.00 0.00 0.00 4.81
3965 5507 5.294552 CCGTTATCCTTCTTCAATCCAAGTC 59.705 44.000 0.00 0.00 0.00 3.01
3968 5510 7.413438 CGTTATCCTTCTTCAATCCAAGTCTTG 60.413 40.741 5.53 5.53 0.00 3.02
4000 5542 4.890581 TCTCCATAACTCTAGTCTTGCTCC 59.109 45.833 0.00 0.00 0.00 4.70
4001 5543 4.873010 TCCATAACTCTAGTCTTGCTCCT 58.127 43.478 0.00 0.00 0.00 3.69
4002 5544 4.890581 TCCATAACTCTAGTCTTGCTCCTC 59.109 45.833 0.00 0.00 0.00 3.71
4079 5626 2.288666 TCATTTCTTATCTGCCACGGC 58.711 47.619 0.00 0.00 42.35 5.68
4152 5699 9.151471 GCAGTCTGAAAGTTAATTACTGTATGA 57.849 33.333 3.32 0.00 37.12 2.15
4234 5781 8.608844 AGGACTAGTTGTGTTCTATTTTCTTG 57.391 34.615 0.00 0.00 0.00 3.02
4243 5790 4.892934 TGTTCTATTTTCTTGCCAGGTTGT 59.107 37.500 0.00 0.00 0.00 3.32
4244 5791 5.362430 TGTTCTATTTTCTTGCCAGGTTGTT 59.638 36.000 0.00 0.00 0.00 2.83
4267 5814 6.560003 TTGACATAAGCATAAGAGGGAGAA 57.440 37.500 0.00 0.00 0.00 2.87
4275 5822 3.692772 GCATAAGAGGGAGAAGGAGAGGA 60.693 52.174 0.00 0.00 0.00 3.71
4276 5823 2.846665 AAGAGGGAGAAGGAGAGGAG 57.153 55.000 0.00 0.00 0.00 3.69
4277 5824 1.994399 AGAGGGAGAAGGAGAGGAGA 58.006 55.000 0.00 0.00 0.00 3.71
4278 5825 1.852965 AGAGGGAGAAGGAGAGGAGAG 59.147 57.143 0.00 0.00 0.00 3.20
4279 5826 1.850345 GAGGGAGAAGGAGAGGAGAGA 59.150 57.143 0.00 0.00 0.00 3.10
4280 5827 1.852965 AGGGAGAAGGAGAGGAGAGAG 59.147 57.143 0.00 0.00 0.00 3.20
4281 5828 1.133482 GGGAGAAGGAGAGGAGAGAGG 60.133 61.905 0.00 0.00 0.00 3.69
4282 5829 1.133482 GGAGAAGGAGAGGAGAGAGGG 60.133 61.905 0.00 0.00 0.00 4.30
4283 5830 1.850345 GAGAAGGAGAGGAGAGAGGGA 59.150 57.143 0.00 0.00 0.00 4.20
4284 5831 1.852965 AGAAGGAGAGGAGAGAGGGAG 59.147 57.143 0.00 0.00 0.00 4.30
4285 5832 1.850345 GAAGGAGAGGAGAGAGGGAGA 59.150 57.143 0.00 0.00 0.00 3.71
4286 5833 1.522900 AGGAGAGGAGAGAGGGAGAG 58.477 60.000 0.00 0.00 0.00 3.20
4287 5834 0.478507 GGAGAGGAGAGAGGGAGAGG 59.521 65.000 0.00 0.00 0.00 3.69
4288 5835 0.478507 GAGAGGAGAGAGGGAGAGGG 59.521 65.000 0.00 0.00 0.00 4.30
4330 5891 1.674764 ATCCTGCTCTGGCTCTGACG 61.675 60.000 0.00 0.00 39.59 4.35
4384 5945 8.999431 GTGAGTGACCTTGAAATTATTCTTGTA 58.001 33.333 0.00 0.00 36.48 2.41
4415 5976 2.249844 AGGACGTGGTTTAACTGTGG 57.750 50.000 0.00 0.00 0.00 4.17
4441 6002 5.866092 TGATGTCAAGAATCTCAAGAAGTCG 59.134 40.000 0.00 0.00 0.00 4.18
4483 6045 3.580319 GGGTCCCTGGTTGTGCCT 61.580 66.667 0.00 0.00 38.35 4.75
4513 6083 6.705863 ATCTGTAAGCCTTTGGAATGAATC 57.294 37.500 0.00 0.00 0.00 2.52
4574 6144 1.470098 ACTTGTCGCTCAAATGGATGC 59.530 47.619 0.00 0.00 35.48 3.91
4609 6182 5.961395 AATACGTGATACATCCGTTTGAC 57.039 39.130 0.00 0.00 36.01 3.18
4611 6184 2.028839 ACGTGATACATCCGTTTGACCA 60.029 45.455 0.00 0.00 32.51 4.02
4629 6202 9.906660 GTTTGACCAACAAGTAATATGAATCAA 57.093 29.630 0.00 0.00 39.77 2.57
4693 6266 0.905357 ACTAAGAGGTGGAGCGCATT 59.095 50.000 11.47 0.00 0.00 3.56
4722 6295 5.911752 AGTTAGCATGTATCCTGAAGAGTG 58.088 41.667 0.00 0.00 0.00 3.51
4775 6348 9.563748 AATAACCTTAACACTTTTAGCACTACA 57.436 29.630 0.00 0.00 0.00 2.74
4873 6446 4.749245 ACTTTTATCTTGAAGTGCCACG 57.251 40.909 0.00 0.00 34.96 4.94
4958 6694 5.511234 AATAGCAAGATGGATGCACTTTC 57.489 39.130 0.00 0.00 46.22 2.62
5111 6852 3.589951 ATCAGCCCAACAGCATATCTT 57.410 42.857 0.00 0.00 34.23 2.40
5212 6953 8.250143 AGGAAAAAGTAATGTTTGTCTCCATT 57.750 30.769 0.00 0.00 35.55 3.16
5333 7074 2.492088 GGGAAACAGGTGTTCCTATTGC 59.508 50.000 3.39 0.00 43.07 3.56
5339 7080 4.980573 ACAGGTGTTCCTATTGCTGTTTA 58.019 39.130 0.00 0.00 43.07 2.01
5454 7203 5.105756 ACCAATTGCTGCTATCAAGGTAAAC 60.106 40.000 11.74 0.00 0.00 2.01
5498 7248 7.765695 TTCCTTTGAGTTTTATCATTCAGCT 57.234 32.000 0.00 0.00 0.00 4.24
5679 7430 5.565455 ATTCCCTTTTGAGCAAATCCAAA 57.435 34.783 0.00 0.00 0.00 3.28
5680 7431 5.365021 TTCCCTTTTGAGCAAATCCAAAA 57.635 34.783 0.00 0.00 39.19 2.44
5768 7712 5.124457 ACTTTCGCAATGCTCTGTATGAATT 59.876 36.000 2.94 0.00 0.00 2.17
5769 7713 4.541085 TCGCAATGCTCTGTATGAATTG 57.459 40.909 2.94 0.00 0.00 2.32
5796 7740 3.558505 CTTGTTGGCAGTCATTTCTTCG 58.441 45.455 0.00 0.00 0.00 3.79
5811 7755 2.432444 TCTTCGCCTTGTACAATTGGG 58.568 47.619 9.13 11.64 0.00 4.12
5821 7765 3.492337 TGTACAATTGGGTTGAACTCCC 58.508 45.455 10.83 0.00 44.81 4.30
5883 7827 2.147958 GGTTACGTTTGCTGATCCACA 58.852 47.619 0.00 0.00 0.00 4.17
5937 7882 3.038710 GTTGACTTTCTTTGCTTCTGCG 58.961 45.455 0.00 0.00 43.34 5.18
5994 8507 9.859427 CCATTTCTTTGCTTCAAACTATGAATA 57.141 29.630 0.00 0.00 46.62 1.75
6003 8516 9.905713 TGCTTCAAACTATGAATAACCTATTCT 57.094 29.630 7.67 0.00 46.62 2.40
6069 8582 2.027096 CGTGAATTTGTTCATGCGCATG 59.973 45.455 38.48 38.48 40.09 4.06
6086 8599 5.192496 GCGCATGCATGAAATTTTATTCAC 58.808 37.500 30.64 6.46 41.78 3.18
6110 8623 2.168521 TGCTATCAGGTTACACTCAGCC 59.831 50.000 0.00 0.00 0.00 4.85
6202 8715 6.542821 TGATGAACTTGTCCTGAGGTATTTT 58.457 36.000 0.00 0.00 0.00 1.82
6222 8735 5.627499 TTTTTGTTCTCATTCCATCTCCG 57.373 39.130 0.00 0.00 0.00 4.63
6260 8773 4.292186 TGCAGTCTAAATGCCTCTTTCT 57.708 40.909 0.00 0.00 43.18 2.52
6262 8775 5.804639 TGCAGTCTAAATGCCTCTTTCTTA 58.195 37.500 0.00 0.00 43.18 2.10
6264 8777 6.540189 TGCAGTCTAAATGCCTCTTTCTTATC 59.460 38.462 0.00 0.00 43.18 1.75
6265 8778 6.540189 GCAGTCTAAATGCCTCTTTCTTATCA 59.460 38.462 0.00 0.00 37.73 2.15
6266 8779 7.228308 GCAGTCTAAATGCCTCTTTCTTATCAT 59.772 37.037 0.00 0.00 37.73 2.45
6267 8780 8.557864 CAGTCTAAATGCCTCTTTCTTATCATG 58.442 37.037 0.00 0.00 0.00 3.07
6268 8781 7.718753 AGTCTAAATGCCTCTTTCTTATCATGG 59.281 37.037 0.00 0.00 0.00 3.66
6275 8788 5.243283 GCCTCTTTCTTATCATGGCATCAAT 59.757 40.000 0.00 0.00 38.79 2.57
6279 8792 9.841880 CTCTTTCTTATCATGGCATCAATAATG 57.158 33.333 0.00 0.91 38.50 1.90
6599 9112 1.922447 TGGAAGGGGTAGCACATGATT 59.078 47.619 0.00 0.00 0.00 2.57
6625 9138 2.930682 GTTAGATTGCTCGTGGGAGAAC 59.069 50.000 0.00 0.00 43.27 3.01
6643 9156 0.032678 ACGGAGCTGCGATAATCCTG 59.967 55.000 34.91 2.23 0.00 3.86
6682 9195 2.224161 GGCACCAAGATCAGCCTAGTAG 60.224 54.545 0.00 0.00 43.70 2.57
6694 9207 8.138712 AGATCAGCCTAGTAGTTATTTTCTTCG 58.861 37.037 0.00 0.00 0.00 3.79
6742 9255 5.783111 ACCTTGTCAATCTTGGTTATTTGC 58.217 37.500 0.00 0.00 0.00 3.68
6885 9403 4.776795 AAAACTTTGTTTCGTGTCCACT 57.223 36.364 0.00 0.00 0.00 4.00
6907 9426 2.587522 AGAAAGAGAGTTGTTTGCCCC 58.412 47.619 0.00 0.00 0.00 5.80
6926 9445 6.086095 TGCCCCTTTATATAGTACCAGCTAA 58.914 40.000 0.00 0.00 0.00 3.09
7022 9541 5.084519 TCCTCCCAATTATAGTGATACGCT 58.915 41.667 0.00 0.00 0.00 5.07
7080 9600 5.338614 CACGTAAAAATCCGTGTCTTTCT 57.661 39.130 4.17 0.00 46.87 2.52
7081 9601 5.137403 CACGTAAAAATCCGTGTCTTTCTG 58.863 41.667 4.17 0.00 46.87 3.02
7082 9602 4.812626 ACGTAAAAATCCGTGTCTTTCTGT 59.187 37.500 0.00 0.00 35.69 3.41
7084 9604 6.183360 ACGTAAAAATCCGTGTCTTTCTGTTT 60.183 34.615 0.00 0.00 35.69 2.83
7085 9605 6.356190 CGTAAAAATCCGTGTCTTTCTGTTTC 59.644 38.462 0.00 0.00 0.00 2.78
7086 9606 5.828299 AAAATCCGTGTCTTTCTGTTTCA 57.172 34.783 0.00 0.00 0.00 2.69
7087 9607 6.391227 AAAATCCGTGTCTTTCTGTTTCAT 57.609 33.333 0.00 0.00 0.00 2.57
7090 9610 7.504924 AATCCGTGTCTTTCTGTTTCATTTA 57.495 32.000 0.00 0.00 0.00 1.40
7133 9678 4.973051 CAGATACGAATTTGAGACGAGAGG 59.027 45.833 0.00 0.00 0.00 3.69
7356 10242 1.439679 GCAGCCAACCACAGTACTAC 58.560 55.000 0.00 0.00 0.00 2.73
7417 10303 1.153823 CTTCACGTCAGGCCTACCG 60.154 63.158 18.75 18.75 42.76 4.02
7459 10345 0.389817 TGGCGTGAAGACCGATCAAG 60.390 55.000 0.00 0.00 0.00 3.02
7465 10351 1.067846 TGAAGACCGATCAAGTCCACG 60.068 52.381 8.82 0.00 34.67 4.94
7480 10366 0.809241 CCACGAGCTGCTCCTCAATC 60.809 60.000 22.97 0.00 0.00 2.67
7485 10371 0.829333 AGCTGCTCCTCAATCGTGAT 59.171 50.000 0.00 0.00 31.85 3.06
7504 10390 6.652062 TCGTGATGTGAAGACAGTACTACTAA 59.348 38.462 0.00 0.00 34.87 2.24
7600 10486 4.672283 GCCTACTACTTCTTCACGTGAGAC 60.672 50.000 19.11 0.63 0.00 3.36
7669 10555 1.687494 CTACGTTCGCTGCCTGAAGC 61.687 60.000 0.00 0.00 44.14 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 6.093771 GGATGAGATTATGGCATTGACAGATC 59.906 42.308 4.78 4.57 0.00 2.75
36 37 5.129485 GGGAGTGACTTTGAGGATGAGATTA 59.871 44.000 0.00 0.00 0.00 1.75
89 90 5.469760 CAGATGTGTTTGTGAAGTACCATGA 59.530 40.000 0.00 0.00 0.00 3.07
99 100 4.035091 GTGTAGTTGCAGATGTGTTTGTGA 59.965 41.667 0.00 0.00 0.00 3.58
200 201 6.837312 TGAAGTTCTATTTTCTGGTTCCTCA 58.163 36.000 4.17 0.00 0.00 3.86
226 227 1.019673 CCATGGCACTGAAGGAATCG 58.980 55.000 0.00 0.00 0.00 3.34
248 263 9.295308 AACAAATTGTTGCCGTAGGAAGTGAAT 62.295 37.037 10.91 0.00 46.17 2.57
287 302 1.418264 GGGGGAGAAGAAGCTATGTCC 59.582 57.143 0.00 0.00 0.00 4.02
312 327 4.805192 CCGAATTGGTCCTAATTTGCAATG 59.195 41.667 0.00 0.00 32.46 2.82
345 360 1.067821 TGTTCGTTTCCATTTGGGTGC 59.932 47.619 0.00 0.00 38.11 5.01
377 394 4.361783 TCAGTGAAATCATGGACCTAGGA 58.638 43.478 17.98 0.00 0.00 2.94
381 398 6.825721 GTCTATTTCAGTGAAATCATGGACCT 59.174 38.462 29.68 10.41 40.77 3.85
659 681 3.893763 CCACCTCTCTCGCGCGAT 61.894 66.667 34.86 15.10 0.00 4.58
743 766 3.007920 CCCAGGAGGCAGAGCACT 61.008 66.667 0.00 0.00 0.00 4.40
775 798 1.987855 CCCACTAAGGCCCGTCTGA 60.988 63.158 0.00 0.00 35.39 3.27
841 1597 0.582005 GGATTATCGACGTGGCAAGC 59.418 55.000 0.00 0.00 0.00 4.01
855 1611 3.916359 TCGTGTGCCAAATAGGGATTA 57.084 42.857 0.00 0.00 41.14 1.75
911 1667 3.365265 GCCCTCGTTTGCACCCTG 61.365 66.667 0.00 0.00 0.00 4.45
930 1713 3.130734 AGCCCTGAATTGGTAGAGGTA 57.869 47.619 0.00 0.00 0.00 3.08
992 1778 1.074405 CCATGGGTGGCATACTAGCAT 59.926 52.381 2.85 0.00 39.01 3.79
993 1779 0.473755 CCATGGGTGGCATACTAGCA 59.526 55.000 2.85 0.00 39.01 3.49
994 1780 3.329300 CCATGGGTGGCATACTAGC 57.671 57.895 2.85 0.00 39.01 3.42
1035 1821 2.041265 ATGGAGAGGCGGGGAAGT 59.959 61.111 0.00 0.00 0.00 3.01
1812 2624 1.584724 TCATCAAACTCCCTCCCTCC 58.415 55.000 0.00 0.00 0.00 4.30
1813 2625 2.774234 TCATCATCAAACTCCCTCCCTC 59.226 50.000 0.00 0.00 0.00 4.30
1814 2626 2.850833 TCATCATCAAACTCCCTCCCT 58.149 47.619 0.00 0.00 0.00 4.20
1815 2627 3.652057 TTCATCATCAAACTCCCTCCC 57.348 47.619 0.00 0.00 0.00 4.30
1816 2628 3.317430 GCATTCATCATCAAACTCCCTCC 59.683 47.826 0.00 0.00 0.00 4.30
1817 2629 4.036498 CAGCATTCATCATCAAACTCCCTC 59.964 45.833 0.00 0.00 0.00 4.30
1818 2630 3.952323 CAGCATTCATCATCAAACTCCCT 59.048 43.478 0.00 0.00 0.00 4.20
1819 2631 3.698040 ACAGCATTCATCATCAAACTCCC 59.302 43.478 0.00 0.00 0.00 4.30
1820 2632 4.978083 ACAGCATTCATCATCAAACTCC 57.022 40.909 0.00 0.00 0.00 3.85
1821 2633 4.561606 GCAACAGCATTCATCATCAAACTC 59.438 41.667 0.00 0.00 0.00 3.01
1822 2634 4.021807 TGCAACAGCATTCATCATCAAACT 60.022 37.500 0.00 0.00 32.31 2.66
1823 2635 4.239304 TGCAACAGCATTCATCATCAAAC 58.761 39.130 0.00 0.00 32.31 2.93
1858 2670 7.169140 CACTATGTTGCGTATGTTATAGAGCAA 59.831 37.037 0.00 0.00 41.48 3.91
1968 2781 6.094603 TGACACCTCGGTAAGAAATACTACTC 59.905 42.308 0.00 0.00 34.74 2.59
1969 2782 5.948162 TGACACCTCGGTAAGAAATACTACT 59.052 40.000 0.00 0.00 34.74 2.57
1970 2783 6.032717 GTGACACCTCGGTAAGAAATACTAC 58.967 44.000 0.00 0.00 34.74 2.73
2122 2935 6.423604 TGTGGATGATTTATGCTACACATACG 59.576 38.462 0.00 0.00 41.02 3.06
2334 3147 8.571336 CCTCCAAATGAATGTCCAATTAGTATC 58.429 37.037 0.00 0.00 0.00 2.24
2462 3992 2.811431 TGGGAAGAAGTACAAACATGCG 59.189 45.455 0.00 0.00 0.00 4.73
2492 4022 9.638239 TTCCAAGCATCAGATTTATTTGTTAAC 57.362 29.630 0.00 0.00 0.00 2.01
2506 4036 4.381292 GGTCAATTCCTTTCCAAGCATCAG 60.381 45.833 0.00 0.00 0.00 2.90
2593 4123 6.043938 AGACTTATAACCTTGAACCTTGGTCA 59.956 38.462 0.00 0.00 32.98 4.02
2594 4124 6.473758 AGACTTATAACCTTGAACCTTGGTC 58.526 40.000 0.00 0.00 32.98 4.02
2679 4209 9.031360 GCAAAGAAGATAGTCGTTATTGTGATA 57.969 33.333 0.00 0.00 0.00 2.15
2680 4210 7.766278 AGCAAAGAAGATAGTCGTTATTGTGAT 59.234 33.333 0.00 0.00 0.00 3.06
2681 4211 7.097192 AGCAAAGAAGATAGTCGTTATTGTGA 58.903 34.615 0.00 0.00 0.00 3.58
2682 4212 7.295952 AGCAAAGAAGATAGTCGTTATTGTG 57.704 36.000 0.00 0.00 0.00 3.33
2683 4213 8.870879 GTTAGCAAAGAAGATAGTCGTTATTGT 58.129 33.333 0.00 0.00 0.00 2.71
2684 4214 8.869897 TGTTAGCAAAGAAGATAGTCGTTATTG 58.130 33.333 0.00 0.00 0.00 1.90
2685 4215 8.997621 TGTTAGCAAAGAAGATAGTCGTTATT 57.002 30.769 0.00 0.00 0.00 1.40
2686 4216 9.601217 AATGTTAGCAAAGAAGATAGTCGTTAT 57.399 29.630 0.00 0.00 0.00 1.89
2687 4217 8.997621 AATGTTAGCAAAGAAGATAGTCGTTA 57.002 30.769 0.00 0.00 0.00 3.18
2688 4218 7.602644 TGAATGTTAGCAAAGAAGATAGTCGTT 59.397 33.333 0.00 0.00 0.00 3.85
2689 4219 7.097192 TGAATGTTAGCAAAGAAGATAGTCGT 58.903 34.615 0.00 0.00 0.00 4.34
2690 4220 7.525688 TGAATGTTAGCAAAGAAGATAGTCG 57.474 36.000 0.00 0.00 0.00 4.18
2699 4229 9.230122 TGACAATTCTATGAATGTTAGCAAAGA 57.770 29.630 0.00 0.00 0.00 2.52
2700 4230 9.844790 TTGACAATTCTATGAATGTTAGCAAAG 57.155 29.630 0.00 0.00 0.00 2.77
2701 4231 9.624697 GTTGACAATTCTATGAATGTTAGCAAA 57.375 29.630 0.00 0.00 0.00 3.68
2702 4232 9.013229 AGTTGACAATTCTATGAATGTTAGCAA 57.987 29.630 0.00 0.00 0.00 3.91
2703 4233 8.453320 CAGTTGACAATTCTATGAATGTTAGCA 58.547 33.333 0.00 0.00 0.00 3.49
2704 4234 7.430502 GCAGTTGACAATTCTATGAATGTTAGC 59.569 37.037 0.00 0.00 0.00 3.09
2705 4235 8.453320 TGCAGTTGACAATTCTATGAATGTTAG 58.547 33.333 0.00 0.00 0.00 2.34
2706 4236 8.334263 TGCAGTTGACAATTCTATGAATGTTA 57.666 30.769 0.00 0.00 0.00 2.41
2707 4237 7.218228 TGCAGTTGACAATTCTATGAATGTT 57.782 32.000 0.00 0.00 0.00 2.71
2708 4238 6.822667 TGCAGTTGACAATTCTATGAATGT 57.177 33.333 0.00 0.00 0.00 2.71
2709 4239 9.791820 TTTATGCAGTTGACAATTCTATGAATG 57.208 29.630 0.00 0.00 0.00 2.67
2711 4241 9.230122 TCTTTATGCAGTTGACAATTCTATGAA 57.770 29.630 0.00 0.00 0.00 2.57
2712 4242 8.791327 TCTTTATGCAGTTGACAATTCTATGA 57.209 30.769 0.00 0.00 0.00 2.15
2713 4243 9.447040 CATCTTTATGCAGTTGACAATTCTATG 57.553 33.333 0.00 0.00 0.00 2.23
2714 4244 9.182214 ACATCTTTATGCAGTTGACAATTCTAT 57.818 29.630 0.00 0.00 36.50 1.98
2715 4245 8.565896 ACATCTTTATGCAGTTGACAATTCTA 57.434 30.769 0.00 0.00 36.50 2.10
2716 4246 7.458409 ACATCTTTATGCAGTTGACAATTCT 57.542 32.000 0.00 0.00 36.50 2.40
2717 4247 8.454106 AGTACATCTTTATGCAGTTGACAATTC 58.546 33.333 0.00 0.00 36.50 2.17
2718 4248 8.340618 AGTACATCTTTATGCAGTTGACAATT 57.659 30.769 0.00 0.00 36.50 2.32
2719 4249 7.928307 AGTACATCTTTATGCAGTTGACAAT 57.072 32.000 0.00 0.00 36.50 2.71
2720 4250 7.744087 AAGTACATCTTTATGCAGTTGACAA 57.256 32.000 0.00 0.00 36.50 3.18
2721 4251 7.744087 AAAGTACATCTTTATGCAGTTGACA 57.256 32.000 0.00 0.00 43.59 3.58
2722 4252 8.289618 TCAAAAGTACATCTTTATGCAGTTGAC 58.710 33.333 0.00 0.00 44.50 3.18
2723 4253 8.289618 GTCAAAAGTACATCTTTATGCAGTTGA 58.710 33.333 0.00 0.00 44.50 3.18
2724 4254 7.538678 GGTCAAAAGTACATCTTTATGCAGTTG 59.461 37.037 0.00 0.00 44.50 3.16
2725 4255 7.230510 TGGTCAAAAGTACATCTTTATGCAGTT 59.769 33.333 0.00 0.00 44.50 3.16
2726 4256 6.714810 TGGTCAAAAGTACATCTTTATGCAGT 59.285 34.615 0.00 0.00 44.50 4.40
2727 4257 7.144722 TGGTCAAAAGTACATCTTTATGCAG 57.855 36.000 0.00 0.00 44.50 4.41
2728 4258 7.446931 TCTTGGTCAAAAGTACATCTTTATGCA 59.553 33.333 0.00 0.00 44.50 3.96
2729 4259 7.816640 TCTTGGTCAAAAGTACATCTTTATGC 58.183 34.615 0.00 0.00 44.50 3.14
2732 4262 9.567776 TGAATCTTGGTCAAAAGTACATCTTTA 57.432 29.630 0.00 0.00 44.50 1.85
2733 4263 8.463930 TGAATCTTGGTCAAAAGTACATCTTT 57.536 30.769 0.00 0.00 46.86 2.52
2734 4264 8.463930 TTGAATCTTGGTCAAAAGTACATCTT 57.536 30.769 0.00 0.00 38.10 2.40
2735 4265 7.175641 CCTTGAATCTTGGTCAAAAGTACATCT 59.824 37.037 0.00 0.00 34.68 2.90
2736 4266 7.040409 ACCTTGAATCTTGGTCAAAAGTACATC 60.040 37.037 0.00 0.00 34.68 3.06
2737 4267 6.777580 ACCTTGAATCTTGGTCAAAAGTACAT 59.222 34.615 0.00 0.00 34.68 2.29
2738 4268 6.126409 ACCTTGAATCTTGGTCAAAAGTACA 58.874 36.000 0.00 0.00 34.68 2.90
2739 4269 6.635030 ACCTTGAATCTTGGTCAAAAGTAC 57.365 37.500 0.00 0.00 34.68 2.73
2740 4270 8.934023 ATAACCTTGAATCTTGGTCAAAAGTA 57.066 30.769 0.00 0.00 34.68 2.24
2741 4271 7.839680 ATAACCTTGAATCTTGGTCAAAAGT 57.160 32.000 0.00 0.00 34.68 2.66
2742 4272 9.846248 CTTATAACCTTGAATCTTGGTCAAAAG 57.154 33.333 0.00 1.01 34.68 2.27
2743 4273 9.362151 ACTTATAACCTTGAATCTTGGTCAAAA 57.638 29.630 0.00 0.00 34.68 2.44
2744 4274 8.934023 ACTTATAACCTTGAATCTTGGTCAAA 57.066 30.769 0.00 0.00 34.68 2.69
2745 4275 8.383175 AGACTTATAACCTTGAATCTTGGTCAA 58.617 33.333 0.00 0.00 32.98 3.18
2746 4276 7.918076 AGACTTATAACCTTGAATCTTGGTCA 58.082 34.615 0.00 0.00 32.98 4.02
2747 4277 8.261522 AGAGACTTATAACCTTGAATCTTGGTC 58.738 37.037 0.00 0.00 32.98 4.02
2748 4278 8.043710 CAGAGACTTATAACCTTGAATCTTGGT 58.956 37.037 0.00 0.00 35.29 3.67
2749 4279 7.011857 GCAGAGACTTATAACCTTGAATCTTGG 59.988 40.741 0.00 0.00 0.00 3.61
2750 4280 7.550551 TGCAGAGACTTATAACCTTGAATCTTG 59.449 37.037 0.00 0.00 0.00 3.02
2751 4281 7.624549 TGCAGAGACTTATAACCTTGAATCTT 58.375 34.615 0.00 0.00 0.00 2.40
2752 4282 7.187824 TGCAGAGACTTATAACCTTGAATCT 57.812 36.000 0.00 0.00 0.00 2.40
2753 4283 8.983724 GTATGCAGAGACTTATAACCTTGAATC 58.016 37.037 0.00 0.00 0.00 2.52
2754 4284 8.709308 AGTATGCAGAGACTTATAACCTTGAAT 58.291 33.333 0.00 0.00 0.00 2.57
2755 4285 7.981789 CAGTATGCAGAGACTTATAACCTTGAA 59.018 37.037 0.00 0.00 0.00 2.69
2756 4286 7.417911 CCAGTATGCAGAGACTTATAACCTTGA 60.418 40.741 0.00 0.00 31.97 3.02
2757 4287 6.703607 CCAGTATGCAGAGACTTATAACCTTG 59.296 42.308 0.00 0.00 31.97 3.61
2758 4288 6.183361 CCCAGTATGCAGAGACTTATAACCTT 60.183 42.308 0.00 0.00 31.97 3.50
2759 4289 5.305644 CCCAGTATGCAGAGACTTATAACCT 59.694 44.000 0.00 0.00 31.97 3.50
2760 4290 5.070580 ACCCAGTATGCAGAGACTTATAACC 59.929 44.000 0.00 0.00 31.97 2.85
2761 4291 6.163135 ACCCAGTATGCAGAGACTTATAAC 57.837 41.667 0.00 0.00 31.97 1.89
2762 4292 7.067421 ACTACCCAGTATGCAGAGACTTATAA 58.933 38.462 0.00 0.00 31.45 0.98
2763 4293 6.611785 ACTACCCAGTATGCAGAGACTTATA 58.388 40.000 0.00 0.00 31.45 0.98
2764 4294 5.459505 ACTACCCAGTATGCAGAGACTTAT 58.540 41.667 0.00 0.00 31.45 1.73
2765 4295 4.868268 ACTACCCAGTATGCAGAGACTTA 58.132 43.478 0.00 0.00 31.45 2.24
2766 4296 3.714144 ACTACCCAGTATGCAGAGACTT 58.286 45.455 0.00 0.00 31.45 3.01
2767 4297 3.390175 ACTACCCAGTATGCAGAGACT 57.610 47.619 0.00 0.00 31.45 3.24
2776 4306 7.403813 TGGTAAGAAAACCATACTACCCAGTAT 59.596 37.037 0.00 0.00 46.80 2.12
2777 4307 6.730038 TGGTAAGAAAACCATACTACCCAGTA 59.270 38.462 0.00 0.00 44.68 2.74
2778 4308 5.548836 TGGTAAGAAAACCATACTACCCAGT 59.451 40.000 0.00 0.00 44.68 4.00
2779 4309 6.057321 TGGTAAGAAAACCATACTACCCAG 57.943 41.667 0.00 0.00 44.68 4.45
2790 4320 5.007682 TCCAATACTGCTGGTAAGAAAACC 58.992 41.667 0.00 0.00 40.19 3.27
2791 4321 6.374333 TGATCCAATACTGCTGGTAAGAAAAC 59.626 38.462 0.00 0.00 35.30 2.43
2792 4322 6.480763 TGATCCAATACTGCTGGTAAGAAAA 58.519 36.000 0.00 0.00 35.30 2.29
2793 4323 6.061022 TGATCCAATACTGCTGGTAAGAAA 57.939 37.500 0.00 0.00 35.30 2.52
2794 4324 5.692115 TGATCCAATACTGCTGGTAAGAA 57.308 39.130 0.00 0.00 35.30 2.52
2795 4325 5.894298 ATGATCCAATACTGCTGGTAAGA 57.106 39.130 0.00 0.00 35.30 2.10
2796 4326 8.535335 AGTATATGATCCAATACTGCTGGTAAG 58.465 37.037 13.50 0.00 37.49 2.34
2797 4327 8.314021 CAGTATATGATCCAATACTGCTGGTAA 58.686 37.037 21.97 0.00 44.99 2.85
2798 4328 7.840931 CAGTATATGATCCAATACTGCTGGTA 58.159 38.462 21.97 0.00 44.99 3.25
2799 4329 6.705302 CAGTATATGATCCAATACTGCTGGT 58.295 40.000 21.97 0.00 44.99 4.00
3009 4539 6.094048 ACACTATTAGTTGCCAGTTTATGCAG 59.906 38.462 0.00 0.00 38.95 4.41
3010 4540 5.943416 ACACTATTAGTTGCCAGTTTATGCA 59.057 36.000 0.00 0.00 35.27 3.96
3027 4557 5.163195 CCCAGTGGCCTTCTAATACACTATT 60.163 44.000 3.32 0.00 40.14 1.73
3046 4576 6.790319 ACCTAACTTAACATGAAATCCCAGT 58.210 36.000 0.00 0.00 0.00 4.00
3196 4726 9.232473 CTTAAAGTTTTGAAGCCTATTACTCCT 57.768 33.333 0.00 0.00 0.00 3.69
3207 4737 7.223777 TGGCAATGTTACTTAAAGTTTTGAAGC 59.776 33.333 0.00 0.00 0.00 3.86
3216 4746 9.128107 CTTTGTATGTGGCAATGTTACTTAAAG 57.872 33.333 0.00 0.00 0.00 1.85
3248 4778 6.208644 TGCAGAAAAAGCTTGTAAATGAGTC 58.791 36.000 0.00 0.00 0.00 3.36
3253 4783 5.985530 GGTTCTGCAGAAAAAGCTTGTAAAT 59.014 36.000 29.99 0.00 35.58 1.40
3263 4793 5.398603 TTGTCTTTGGTTCTGCAGAAAAA 57.601 34.783 29.99 24.13 35.58 1.94
3318 4853 4.526650 AGGACAAAAACAACCTTGACAACT 59.473 37.500 0.00 0.00 0.00 3.16
3352 4887 1.069296 ACACGGTTCGAATTGTGCATG 60.069 47.619 24.18 10.33 35.79 4.06
3411 4946 3.304928 CCGCAATATGAAAGGATCTTGGC 60.305 47.826 0.00 0.00 0.00 4.52
3426 4961 5.070446 ACTGATCTTAAGATGGACCGCAATA 59.930 40.000 22.61 0.00 34.37 1.90
3472 5007 7.449086 TGGATCGTGGTATCATGTAATACTACA 59.551 37.037 16.29 7.94 41.25 2.74
3527 5062 5.491800 TCTTGTAGAGGGAGTAAGACCTAGT 59.508 44.000 0.00 0.00 37.18 2.57
3748 5283 4.950475 TGTTGATTTGTGTAAGGTGTCCAA 59.050 37.500 0.00 0.00 0.00 3.53
3790 5325 4.574674 ATCTGTGCCAAAGGATCAGTTA 57.425 40.909 0.00 0.00 0.00 2.24
3794 5329 6.855763 ATTTTTATCTGTGCCAAAGGATCA 57.144 33.333 0.00 0.00 0.00 2.92
3845 5380 7.595502 ACTCGAGAACTTGTGTACTAGATTTTG 59.404 37.037 21.68 0.00 0.00 2.44
3849 5384 6.430308 TCAACTCGAGAACTTGTGTACTAGAT 59.570 38.462 21.68 0.00 0.00 1.98
3902 5444 6.330250 TCCTTTTTGATTTGGTATTTTGGGGA 59.670 34.615 0.00 0.00 0.00 4.81
3965 5507 5.879223 AGAGTTATGGAGATGCAGAAACAAG 59.121 40.000 0.00 0.00 0.00 3.16
3968 5510 6.578023 ACTAGAGTTATGGAGATGCAGAAAC 58.422 40.000 0.00 0.00 0.00 2.78
4234 5781 2.295909 TGCTTATGTCAAACAACCTGGC 59.704 45.455 0.00 0.00 0.00 4.85
4243 5790 6.560003 TCTCCCTCTTATGCTTATGTCAAA 57.440 37.500 0.00 0.00 0.00 2.69
4244 5791 6.408548 CCTTCTCCCTCTTATGCTTATGTCAA 60.409 42.308 0.00 0.00 0.00 3.18
4267 5814 1.522900 CTCTCCCTCTCTCCTCTCCT 58.477 60.000 0.00 0.00 0.00 3.69
4275 5822 1.522900 CTCTCTCCCTCTCCCTCTCT 58.477 60.000 0.00 0.00 0.00 3.10
4276 5823 0.478507 CCTCTCTCCCTCTCCCTCTC 59.521 65.000 0.00 0.00 0.00 3.20
4277 5824 0.047176 TCCTCTCTCCCTCTCCCTCT 59.953 60.000 0.00 0.00 0.00 3.69
4278 5825 0.185175 GTCCTCTCTCCCTCTCCCTC 59.815 65.000 0.00 0.00 0.00 4.30
4279 5826 1.293683 GGTCCTCTCTCCCTCTCCCT 61.294 65.000 0.00 0.00 0.00 4.20
4280 5827 1.231928 GGTCCTCTCTCCCTCTCCC 59.768 68.421 0.00 0.00 0.00 4.30
4281 5828 0.560688 ATGGTCCTCTCTCCCTCTCC 59.439 60.000 0.00 0.00 0.00 3.71
4282 5829 2.714250 TCTATGGTCCTCTCTCCCTCTC 59.286 54.545 0.00 0.00 0.00 3.20
4283 5830 2.795556 TCTATGGTCCTCTCTCCCTCT 58.204 52.381 0.00 0.00 0.00 3.69
4284 5831 3.825908 ATCTATGGTCCTCTCTCCCTC 57.174 52.381 0.00 0.00 0.00 4.30
4285 5832 3.208692 ACAATCTATGGTCCTCTCTCCCT 59.791 47.826 0.00 0.00 0.00 4.20
4286 5833 3.582164 ACAATCTATGGTCCTCTCTCCC 58.418 50.000 0.00 0.00 0.00 4.30
4287 5834 5.622346 AAACAATCTATGGTCCTCTCTCC 57.378 43.478 0.00 0.00 0.00 3.71
4288 5835 7.875554 GGATTAAACAATCTATGGTCCTCTCTC 59.124 40.741 0.00 0.00 0.00 3.20
4330 5891 1.495148 CCAGAGAAATCCCTAACCCCC 59.505 57.143 0.00 0.00 0.00 5.40
4384 5945 4.553330 ACCACGTCCTTCTAATCATTGT 57.447 40.909 0.00 0.00 0.00 2.71
4415 5976 7.432350 ACTTCTTGAGATTCTTGACATCAAC 57.568 36.000 0.00 0.00 0.00 3.18
4441 6002 2.489722 GTTTCCATCCTTCTCAGCAACC 59.510 50.000 0.00 0.00 0.00 3.77
4513 6083 9.442047 GGAGTATCAATACTTTGGAATGGATAG 57.558 37.037 4.26 0.00 43.27 2.08
4574 6144 8.797266 TGTATCACGTATTTTAGTGCTAGATG 57.203 34.615 0.00 0.00 38.19 2.90
4609 6182 8.960591 ACTCCTTTGATTCATATTACTTGTTGG 58.039 33.333 0.00 0.00 0.00 3.77
4693 6266 7.342026 TCTTCAGGATACATGCTAACTCAACTA 59.658 37.037 0.00 0.00 41.41 2.24
4944 6680 2.019984 GGTCAGGAAAGTGCATCCATC 58.980 52.381 7.56 0.00 39.55 3.51
5144 6885 9.550406 AATTATTCATTAGCAAAATGTGGATGG 57.450 29.630 10.51 0.00 0.00 3.51
5212 6953 5.878116 GTGGCATGTAGTGACTTTACCATAA 59.122 40.000 0.00 0.00 36.52 1.90
5270 7011 0.110010 GAACAGCGCCAGAAAGCTTC 60.110 55.000 2.29 0.00 42.52 3.86
5549 7300 5.046529 CACAGGTGCTAGAGTAAATGCTAG 58.953 45.833 0.00 0.00 37.69 3.42
5679 7430 8.071177 AGCAAGCACTCCATATTAAGAAAATT 57.929 30.769 0.00 0.00 0.00 1.82
5680 7431 7.651027 AGCAAGCACTCCATATTAAGAAAAT 57.349 32.000 0.00 0.00 0.00 1.82
5796 7740 3.320826 AGTTCAACCCAATTGTACAAGGC 59.679 43.478 14.65 0.00 40.18 4.35
5811 7755 7.556635 AGTTAAAATAGGCATAGGGAGTTCAAC 59.443 37.037 0.00 0.00 0.00 3.18
5821 7765 8.697507 AATTGGGAGAGTTAAAATAGGCATAG 57.302 34.615 0.00 0.00 0.00 2.23
5897 7841 7.867921 AGTCAACAAGTATGATGGGGTAATTA 58.132 34.615 0.00 0.00 30.79 1.40
5937 7882 9.967346 ATGTAGTACATGAAGTGTATGATACAC 57.033 33.333 24.30 24.30 46.66 2.90
5966 8479 7.370383 TCATAGTTTGAAGCAAAGAAATGGTC 58.630 34.615 0.00 0.00 33.82 4.02
5994 8507 6.169800 GCTTGAAGAGAGACAAGAATAGGTT 58.830 40.000 0.00 0.00 43.98 3.50
6003 8516 3.326006 ACTGATGGCTTGAAGAGAGACAA 59.674 43.478 0.00 0.00 35.40 3.18
6069 8582 6.973229 AGCAAGGTGAATAAAATTTCATGC 57.027 33.333 0.00 4.06 38.50 4.06
6076 8589 7.961326 AACCTGATAGCAAGGTGAATAAAAT 57.039 32.000 3.38 0.00 35.88 1.82
6086 8599 4.437239 CTGAGTGTAACCTGATAGCAAGG 58.563 47.826 0.00 0.00 37.80 3.61
6202 8715 3.609853 CCGGAGATGGAATGAGAACAAA 58.390 45.455 0.00 0.00 0.00 2.83
6209 8722 2.115427 TGTAAGCCGGAGATGGAATGA 58.885 47.619 5.05 0.00 0.00 2.57
6260 8773 7.659390 TGTCGTACATTATTGATGCCATGATAA 59.341 33.333 0.00 0.00 39.47 1.75
6262 8775 5.997129 TGTCGTACATTATTGATGCCATGAT 59.003 36.000 0.00 0.00 39.47 2.45
6264 8777 5.671742 TGTCGTACATTATTGATGCCATG 57.328 39.130 0.00 0.00 39.47 3.66
6265 8778 5.997129 TGATGTCGTACATTATTGATGCCAT 59.003 36.000 0.00 0.00 39.27 4.40
6266 8779 5.363939 TGATGTCGTACATTATTGATGCCA 58.636 37.500 0.00 0.00 39.27 4.92
6267 8780 5.922739 TGATGTCGTACATTATTGATGCC 57.077 39.130 0.00 0.00 39.27 4.40
6268 8781 6.891624 ACATGATGTCGTACATTATTGATGC 58.108 36.000 0.00 0.00 39.27 3.91
6275 8788 9.304731 GTACCTAAAACATGATGTCGTACATTA 57.695 33.333 0.00 0.00 39.27 1.90
6279 8792 6.101332 TGGTACCTAAAACATGATGTCGTAC 58.899 40.000 14.36 5.19 0.00 3.67
6395 8908 5.192927 TGCACCCATAACAAGGATTTCTAG 58.807 41.667 0.00 0.00 0.00 2.43
6409 8922 3.768215 TGAAATCATTGCTTGCACCCATA 59.232 39.130 0.00 0.00 0.00 2.74
6599 9112 3.055458 TCCCACGAGCAATCTAACATCAA 60.055 43.478 0.00 0.00 0.00 2.57
6625 9138 0.032678 ACAGGATTATCGCAGCTCCG 59.967 55.000 0.00 0.00 32.87 4.63
6643 9156 4.395231 GGTGCCAGTTTATCTAACCAAGAC 59.605 45.833 0.00 0.00 36.93 3.01
6694 9207 9.638239 GTCTCCAAGATATCAAATCTATCAGAC 57.362 37.037 5.32 0.71 0.00 3.51
6742 9255 1.394917 CTAGCAACTGCCTTTACGCTG 59.605 52.381 0.00 0.00 43.38 5.18
6870 9388 5.421277 TCTTTCTTAGTGGACACGAAACAA 58.579 37.500 0.00 0.00 36.20 2.83
6885 9403 4.141251 AGGGGCAAACAACTCTCTTTCTTA 60.141 41.667 0.00 0.00 0.00 2.10
7022 9541 1.367599 AAAACCACGGACGCACGAAA 61.368 50.000 6.34 0.00 37.61 3.46
7133 9678 2.458610 GCGGCGCAGTAACCCTAAC 61.459 63.158 29.21 0.00 0.00 2.34
7459 10345 2.159819 TTGAGGAGCAGCTCGTGGAC 62.160 60.000 22.24 8.66 0.00 4.02
7465 10351 0.174389 TCACGATTGAGGAGCAGCTC 59.826 55.000 14.69 14.69 0.00 4.09
7480 10366 5.298197 AGTAGTACTGTCTTCACATCACG 57.702 43.478 5.39 0.00 0.00 4.35
7485 10371 8.944029 GTGAGTATTAGTAGTACTGTCTTCACA 58.056 37.037 13.29 3.05 32.77 3.58
7504 10390 4.950475 TCAGATCTTGAGAACCGTGAGTAT 59.050 41.667 0.00 0.00 0.00 2.12
7600 10486 4.082571 ACTTGATCTGGCAAATTTCTTCGG 60.083 41.667 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.