Multiple sequence alignment - TraesCS2B01G298200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G298200 chr2B 100.000 3792 0 0 1 3792 417642859 417646650 0.000000e+00 7003
1 TraesCS2B01G298200 chr2B 96.850 762 7 5 2631 3383 417652995 417653748 0.000000e+00 1258
2 TraesCS2B01G298200 chr2B 97.175 354 7 1 3442 3792 417653735 417654088 2.520000e-166 595
3 TraesCS2B01G298200 chr2B 100.000 60 0 0 3381 3440 214278472 214278413 1.110000e-20 111
4 TraesCS2B01G298200 chr2A 93.321 1632 55 19 1786 3381 469123052 469124665 0.000000e+00 2361
5 TraesCS2B01G298200 chr2A 88.583 1235 67 34 483 1666 469121816 469123027 0.000000e+00 1432
6 TraesCS2B01G298200 chr2A 93.258 356 14 5 3442 3792 469124654 469125004 2.020000e-142 516
7 TraesCS2B01G298200 chr2A 91.358 162 9 4 2741 2901 653949825 653949982 2.290000e-52 217
8 TraesCS2B01G298200 chr2D 92.308 1599 54 31 581 2148 351366020 351367580 0.000000e+00 2207
9 TraesCS2B01G298200 chr2D 95.264 1119 27 7 2279 3383 351373651 351374757 0.000000e+00 1749
10 TraesCS2B01G298200 chr2D 94.884 215 7 3 3442 3653 351374744 351374957 2.180000e-87 333
11 TraesCS2B01G298200 chr2D 93.377 151 6 2 3643 3792 351377204 351377351 1.770000e-53 220
12 TraesCS2B01G298200 chr2D 96.124 129 3 2 2146 2272 351367661 351367789 3.840000e-50 209
13 TraesCS2B01G298200 chr7B 89.154 461 44 4 1 459 179960697 179961153 1.530000e-158 569
14 TraesCS2B01G298200 chr7B 94.366 71 4 0 3381 3451 718352191 718352121 4.000000e-20 110
15 TraesCS2B01G298200 chr7B 93.151 73 0 3 3379 3447 64693613 64693542 6.700000e-18 102
16 TraesCS2B01G298200 chr3B 88.936 470 36 8 1 454 799300684 799300215 1.980000e-157 566
17 TraesCS2B01G298200 chr3B 89.079 467 32 4 1 452 825577368 825577830 2.560000e-156 562
18 TraesCS2B01G298200 chr3B 97.531 81 1 1 373 452 825585611 825585691 1.840000e-28 137
19 TraesCS2B01G298200 chr5B 87.712 472 42 8 1 457 505219123 505219593 1.550000e-148 536
20 TraesCS2B01G298200 chr5B 86.304 460 51 8 1 449 45027128 45026670 1.220000e-134 490
21 TraesCS2B01G298200 chr5B 91.026 78 3 2 3381 3455 307418795 307418871 6.700000e-18 102
22 TraesCS2B01G298200 chr1D 87.686 471 40 8 1 453 296632378 296632848 2.010000e-147 532
23 TraesCS2B01G298200 chr6B 88.838 439 34 7 33 456 56969812 56969374 3.360000e-145 525
24 TraesCS2B01G298200 chr6B 87.393 468 43 8 1 452 65134419 65134886 1.210000e-144 523
25 TraesCS2B01G298200 chr6B 95.522 67 0 1 3379 3442 78271846 78271780 1.860000e-18 104
26 TraesCS2B01G298200 chr6B 95.385 65 2 1 3379 3442 46952921 46952985 6.700000e-18 102
27 TraesCS2B01G298200 chr3D 86.441 472 49 2 1 457 593640321 593639850 1.570000e-138 503
28 TraesCS2B01G298200 chr1B 89.947 378 37 1 1 378 681155124 681154748 1.580000e-133 486
29 TraesCS2B01G298200 chr1B 92.208 77 0 4 3381 3454 373294738 373294665 1.860000e-18 104
30 TraesCS2B01G298200 chr4B 88.442 398 45 1 1 397 581152080 581151683 2.650000e-131 479
31 TraesCS2B01G298200 chr4B 98.387 62 1 0 3381 3442 20078709 20078770 4.000000e-20 110
32 TraesCS2B01G298200 chr7D 85.903 454 52 9 14 457 566258691 566258240 1.230000e-129 473
33 TraesCS2B01G298200 chr7D 91.515 165 10 3 2741 2901 630665929 630666093 1.370000e-54 224
34 TraesCS2B01G298200 chr7D 91.515 165 10 3 2741 2901 630675335 630675499 1.370000e-54 224
35 TraesCS2B01G298200 chr4D 85.584 437 55 4 4 433 497539449 497539014 5.780000e-123 451
36 TraesCS2B01G298200 chr6D 94.444 162 4 2 2741 2901 75847252 75847409 1.050000e-60 244
37 TraesCS2B01G298200 chr4A 87.654 162 6 8 2741 2901 622585246 622585098 3.890000e-40 176
38 TraesCS2B01G298200 chrUn 97.531 81 1 1 373 452 479410919 479410839 1.840000e-28 137
39 TraesCS2B01G298200 chr7A 94.203 69 1 3 3380 3447 604961709 604961643 6.700000e-18 102


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G298200 chr2B 417642859 417646650 3791 False 7003.000000 7003 100.000000 1 3792 1 chr2B.!!$F1 3791
1 TraesCS2B01G298200 chr2B 417652995 417654088 1093 False 926.500000 1258 97.012500 2631 3792 2 chr2B.!!$F2 1161
2 TraesCS2B01G298200 chr2A 469121816 469125004 3188 False 1436.333333 2361 91.720667 483 3792 3 chr2A.!!$F2 3309
3 TraesCS2B01G298200 chr2D 351366020 351367789 1769 False 1208.000000 2207 94.216000 581 2272 2 chr2D.!!$F1 1691
4 TraesCS2B01G298200 chr2D 351373651 351377351 3700 False 767.333333 1749 94.508333 2279 3792 3 chr2D.!!$F2 1513

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
141 142 0.036010 GACACAGGTCCACCATGAGG 60.036 60.0 0.0 0.0 38.12 3.86 F
280 281 0.036858 TGCCGAAACCATGACGATGA 60.037 50.0 0.0 0.0 0.00 2.92 F
457 458 0.037605 GGAAGAAAGAAGCGACCCGA 60.038 55.0 0.0 0.0 0.00 5.14 F
983 1024 0.179073 AGATTGATTCCGGTCCGCAG 60.179 55.0 5.5 0.0 0.00 5.18 F
1552 1614 0.744281 TACCTCTGAATGCGATGCGA 59.256 50.0 0.0 0.0 0.00 5.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2057 2143 0.307760 CCACGAGAAACCACTGTTGC 59.692 55.000 0.00 0.0 34.13 4.17 R
2272 2450 0.447801 GGCGTAACAATCAGCACTGG 59.552 55.000 0.00 0.0 0.00 4.00 R
2275 2453 0.447801 CCTGGCGTAACAATCAGCAC 59.552 55.000 0.00 0.0 0.00 4.40 R
2578 2769 0.798776 CGTACTGCTGCTTTTCCTGG 59.201 55.000 0.00 0.0 0.00 4.45 R
3542 3749 1.001068 TGACCGTCCGTCTATTGCAAA 59.999 47.619 1.71 0.0 42.49 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.216990 ACCCAGATCCACCATCTTCC 58.783 55.000 0.00 0.00 40.20 3.46
20 21 1.216064 CCCAGATCCACCATCTTCCA 58.784 55.000 0.00 0.00 40.20 3.53
21 22 1.142465 CCCAGATCCACCATCTTCCAG 59.858 57.143 0.00 0.00 40.20 3.86
22 23 2.121948 CCAGATCCACCATCTTCCAGA 58.878 52.381 0.00 0.00 40.20 3.86
23 24 2.709934 CCAGATCCACCATCTTCCAGAT 59.290 50.000 0.00 0.00 40.20 2.90
32 33 3.465742 CATCTTCCAGATGTCATCGGT 57.534 47.619 17.61 0.00 45.33 4.69
33 34 2.967599 TCTTCCAGATGTCATCGGTG 57.032 50.000 17.61 8.64 0.00 4.94
34 35 1.134699 TCTTCCAGATGTCATCGGTGC 60.135 52.381 17.61 0.00 0.00 5.01
35 36 0.612744 TTCCAGATGTCATCGGTGCA 59.387 50.000 17.61 0.00 0.00 4.57
36 37 0.176449 TCCAGATGTCATCGGTGCAG 59.824 55.000 17.61 3.26 0.00 4.41
37 38 0.176449 CCAGATGTCATCGGTGCAGA 59.824 55.000 11.38 0.00 0.00 4.26
38 39 1.284657 CAGATGTCATCGGTGCAGAC 58.715 55.000 7.18 0.00 0.00 3.51
39 40 0.176680 AGATGTCATCGGTGCAGACC 59.823 55.000 7.18 0.00 39.14 3.85
40 41 0.108186 GATGTCATCGGTGCAGACCA 60.108 55.000 0.00 0.00 43.33 4.02
41 42 0.391661 ATGTCATCGGTGCAGACCAC 60.392 55.000 0.00 0.00 43.33 4.16
42 43 1.005037 GTCATCGGTGCAGACCACA 60.005 57.895 0.00 0.00 46.50 4.17
43 44 0.602638 GTCATCGGTGCAGACCACAA 60.603 55.000 0.00 0.00 46.50 3.33
44 45 0.324614 TCATCGGTGCAGACCACAAT 59.675 50.000 0.00 0.00 46.50 2.71
45 46 0.729116 CATCGGTGCAGACCACAATC 59.271 55.000 0.00 0.00 46.50 2.67
46 47 0.615331 ATCGGTGCAGACCACAATCT 59.385 50.000 0.00 0.00 46.50 2.40
47 48 0.320683 TCGGTGCAGACCACAATCTG 60.321 55.000 0.00 0.00 46.50 2.90
54 55 1.400846 CAGACCACAATCTGCATCTGC 59.599 52.381 0.00 0.00 39.77 4.26
55 56 1.281287 AGACCACAATCTGCATCTGCT 59.719 47.619 3.53 0.00 42.66 4.24
56 57 1.669779 GACCACAATCTGCATCTGCTC 59.330 52.381 3.53 0.00 42.66 4.26
57 58 1.022735 CCACAATCTGCATCTGCTCC 58.977 55.000 3.53 0.00 42.66 4.70
58 59 1.408405 CCACAATCTGCATCTGCTCCT 60.408 52.381 3.53 0.00 42.66 3.69
59 60 1.671328 CACAATCTGCATCTGCTCCTG 59.329 52.381 3.53 0.00 42.66 3.86
60 61 1.558294 ACAATCTGCATCTGCTCCTGA 59.442 47.619 3.53 0.00 42.66 3.86
61 62 2.026542 ACAATCTGCATCTGCTCCTGAA 60.027 45.455 3.53 0.00 42.66 3.02
62 63 2.328819 ATCTGCATCTGCTCCTGAAC 57.671 50.000 3.53 0.00 42.66 3.18
63 64 1.273759 TCTGCATCTGCTCCTGAACT 58.726 50.000 3.53 0.00 42.66 3.01
64 65 2.460669 TCTGCATCTGCTCCTGAACTA 58.539 47.619 3.53 0.00 42.66 2.24
65 66 2.167281 TCTGCATCTGCTCCTGAACTAC 59.833 50.000 3.53 0.00 42.66 2.73
66 67 1.208052 TGCATCTGCTCCTGAACTACC 59.792 52.381 3.53 0.00 42.66 3.18
67 68 1.484240 GCATCTGCTCCTGAACTACCT 59.516 52.381 0.00 0.00 38.21 3.08
68 69 2.482839 GCATCTGCTCCTGAACTACCTC 60.483 54.545 0.00 0.00 38.21 3.85
69 70 1.853963 TCTGCTCCTGAACTACCTCC 58.146 55.000 0.00 0.00 0.00 4.30
70 71 0.827368 CTGCTCCTGAACTACCTCCC 59.173 60.000 0.00 0.00 0.00 4.30
71 72 0.116342 TGCTCCTGAACTACCTCCCA 59.884 55.000 0.00 0.00 0.00 4.37
72 73 1.276622 GCTCCTGAACTACCTCCCAA 58.723 55.000 0.00 0.00 0.00 4.12
73 74 1.208293 GCTCCTGAACTACCTCCCAAG 59.792 57.143 0.00 0.00 0.00 3.61
74 75 1.208293 CTCCTGAACTACCTCCCAAGC 59.792 57.143 0.00 0.00 0.00 4.01
75 76 1.203313 TCCTGAACTACCTCCCAAGCT 60.203 52.381 0.00 0.00 0.00 3.74
76 77 1.208293 CCTGAACTACCTCCCAAGCTC 59.792 57.143 0.00 0.00 0.00 4.09
77 78 1.208293 CTGAACTACCTCCCAAGCTCC 59.792 57.143 0.00 0.00 0.00 4.70
78 79 1.276622 GAACTACCTCCCAAGCTCCA 58.723 55.000 0.00 0.00 0.00 3.86
79 80 0.984995 AACTACCTCCCAAGCTCCAC 59.015 55.000 0.00 0.00 0.00 4.02
80 81 1.258445 ACTACCTCCCAAGCTCCACG 61.258 60.000 0.00 0.00 0.00 4.94
81 82 2.579684 CTACCTCCCAAGCTCCACGC 62.580 65.000 0.00 0.00 39.57 5.34
82 83 4.785453 CCTCCCAAGCTCCACGCC 62.785 72.222 0.00 0.00 40.39 5.68
102 103 3.434319 CGCTGGAGCAAACGCCAT 61.434 61.111 0.00 0.00 45.48 4.40
103 104 2.486966 GCTGGAGCAAACGCCATC 59.513 61.111 0.00 0.00 45.48 3.51
104 105 2.787249 CTGGAGCAAACGCCATCG 59.213 61.111 0.00 0.00 45.48 3.84
105 106 3.386867 CTGGAGCAAACGCCATCGC 62.387 63.158 0.00 0.00 45.48 4.58
106 107 3.430862 GGAGCAAACGCCATCGCA 61.431 61.111 0.00 0.00 39.84 5.10
107 108 2.560861 GAGCAAACGCCATCGCAA 59.439 55.556 0.00 0.00 39.84 4.85
108 109 1.797537 GAGCAAACGCCATCGCAAC 60.798 57.895 0.00 0.00 39.84 4.17
109 110 3.165318 GCAAACGCCATCGCAACG 61.165 61.111 0.00 0.00 39.84 4.10
110 111 2.501650 CAAACGCCATCGCAACGG 60.502 61.111 0.00 0.00 39.84 4.44
111 112 4.398598 AAACGCCATCGCAACGGC 62.399 61.111 0.00 0.00 45.28 5.68
129 130 3.775654 GGAGGCCGAGGACACAGG 61.776 72.222 0.00 0.00 0.00 4.00
130 131 2.997897 GAGGCCGAGGACACAGGT 60.998 66.667 0.00 0.00 0.00 4.00
131 132 2.997897 AGGCCGAGGACACAGGTC 60.998 66.667 0.00 0.00 43.55 3.85
140 141 3.540211 GACACAGGTCCACCATGAG 57.460 57.895 0.00 0.75 38.12 2.90
141 142 0.036010 GACACAGGTCCACCATGAGG 60.036 60.000 0.00 0.00 38.12 3.86
142 143 0.473694 ACACAGGTCCACCATGAGGA 60.474 55.000 0.00 0.00 38.89 3.71
143 144 0.914644 CACAGGTCCACCATGAGGAT 59.085 55.000 9.64 0.00 37.52 3.24
144 145 0.914644 ACAGGTCCACCATGAGGATG 59.085 55.000 9.64 7.81 37.52 3.51
145 146 0.465097 CAGGTCCACCATGAGGATGC 60.465 60.000 9.64 0.00 37.52 3.91
146 147 1.152881 GGTCCACCATGAGGATGCC 60.153 63.158 9.64 4.60 37.52 4.40
147 148 1.524621 GTCCACCATGAGGATGCCG 60.525 63.158 9.64 0.00 37.52 5.69
148 149 2.903855 CCACCATGAGGATGCCGC 60.904 66.667 0.00 0.00 38.69 6.53
149 150 2.903855 CACCATGAGGATGCCGCC 60.904 66.667 0.00 0.00 38.69 6.13
150 151 4.552365 ACCATGAGGATGCCGCCG 62.552 66.667 0.00 0.00 38.69 6.46
167 168 4.481112 GCCGCCGCACCATCTTTG 62.481 66.667 0.00 0.00 34.03 2.77
168 169 4.481112 CCGCCGCACCATCTTTGC 62.481 66.667 0.00 0.00 36.57 3.68
169 170 3.434319 CGCCGCACCATCTTTGCT 61.434 61.111 0.00 0.00 37.87 3.91
170 171 2.964978 GCCGCACCATCTTTGCTT 59.035 55.556 0.00 0.00 37.87 3.91
171 172 1.444895 GCCGCACCATCTTTGCTTG 60.445 57.895 0.00 0.00 37.87 4.01
172 173 1.865788 GCCGCACCATCTTTGCTTGA 61.866 55.000 0.00 0.00 37.87 3.02
173 174 0.597568 CCGCACCATCTTTGCTTGAA 59.402 50.000 0.00 0.00 37.87 2.69
174 175 1.666888 CCGCACCATCTTTGCTTGAAC 60.667 52.381 0.00 0.00 37.87 3.18
175 176 1.001487 CGCACCATCTTTGCTTGAACA 60.001 47.619 0.00 0.00 37.87 3.18
176 177 2.669364 GCACCATCTTTGCTTGAACAG 58.331 47.619 0.00 0.00 37.00 3.16
177 178 2.035066 GCACCATCTTTGCTTGAACAGT 59.965 45.455 0.00 0.00 37.00 3.55
178 179 3.491447 GCACCATCTTTGCTTGAACAGTT 60.491 43.478 0.00 0.00 37.00 3.16
179 180 4.685924 CACCATCTTTGCTTGAACAGTTT 58.314 39.130 0.00 0.00 0.00 2.66
180 181 4.505191 CACCATCTTTGCTTGAACAGTTTG 59.495 41.667 0.00 0.00 0.00 2.93
181 182 4.053295 CCATCTTTGCTTGAACAGTTTGG 58.947 43.478 0.00 0.00 0.00 3.28
182 183 4.441913 CCATCTTTGCTTGAACAGTTTGGT 60.442 41.667 0.00 0.00 0.00 3.67
183 184 4.799564 TCTTTGCTTGAACAGTTTGGTT 57.200 36.364 0.00 0.00 0.00 3.67
184 185 5.146010 TCTTTGCTTGAACAGTTTGGTTT 57.854 34.783 0.00 0.00 0.00 3.27
185 186 5.167845 TCTTTGCTTGAACAGTTTGGTTTC 58.832 37.500 0.00 0.00 0.00 2.78
186 187 3.518634 TGCTTGAACAGTTTGGTTTCC 57.481 42.857 0.00 0.00 0.00 3.13
187 188 2.828520 TGCTTGAACAGTTTGGTTTCCA 59.171 40.909 0.00 0.00 0.00 3.53
188 189 3.259374 TGCTTGAACAGTTTGGTTTCCAA 59.741 39.130 0.00 0.00 42.29 3.53
197 198 1.723288 TTGGTTTCCAAATCCACCCC 58.277 50.000 0.00 0.00 40.92 4.95
198 199 0.563173 TGGTTTCCAAATCCACCCCA 59.437 50.000 0.00 0.00 0.00 4.96
199 200 1.062121 TGGTTTCCAAATCCACCCCAA 60.062 47.619 0.00 0.00 0.00 4.12
200 201 2.050918 GGTTTCCAAATCCACCCCAAA 58.949 47.619 0.00 0.00 0.00 3.28
201 202 2.439880 GGTTTCCAAATCCACCCCAAAA 59.560 45.455 0.00 0.00 0.00 2.44
202 203 3.117851 GGTTTCCAAATCCACCCCAAAAA 60.118 43.478 0.00 0.00 0.00 1.94
203 204 3.847671 TTCCAAATCCACCCCAAAAAC 57.152 42.857 0.00 0.00 0.00 2.43
204 205 1.689273 TCCAAATCCACCCCAAAAACG 59.311 47.619 0.00 0.00 0.00 3.60
205 206 1.270571 CCAAATCCACCCCAAAAACGG 60.271 52.381 0.00 0.00 0.00 4.44
206 207 1.689273 CAAATCCACCCCAAAAACGGA 59.311 47.619 0.00 0.00 0.00 4.69
207 208 2.301583 CAAATCCACCCCAAAAACGGAT 59.698 45.455 0.00 0.00 38.11 4.18
208 209 1.847328 ATCCACCCCAAAAACGGATC 58.153 50.000 0.00 0.00 30.51 3.36
209 210 0.606944 TCCACCCCAAAAACGGATCG 60.607 55.000 0.00 0.00 0.00 3.69
210 211 1.211709 CACCCCAAAAACGGATCGC 59.788 57.895 0.00 0.00 0.00 4.58
211 212 1.974875 ACCCCAAAAACGGATCGCC 60.975 57.895 0.00 0.00 0.00 5.54
212 213 1.677633 CCCCAAAAACGGATCGCCT 60.678 57.895 0.00 0.00 0.00 5.52
213 214 1.654023 CCCCAAAAACGGATCGCCTC 61.654 60.000 0.00 0.00 0.00 4.70
214 215 1.423845 CCAAAAACGGATCGCCTCG 59.576 57.895 0.00 0.00 0.00 4.63
215 216 1.296056 CCAAAAACGGATCGCCTCGT 61.296 55.000 0.00 0.00 41.71 4.18
216 217 0.094730 CAAAAACGGATCGCCTCGTC 59.905 55.000 0.00 0.00 38.78 4.20
217 218 1.349259 AAAAACGGATCGCCTCGTCG 61.349 55.000 0.00 0.00 38.78 5.12
218 219 3.695022 AAACGGATCGCCTCGTCGG 62.695 63.158 0.00 0.00 38.78 4.79
221 222 3.524606 GGATCGCCTCGTCGGGAA 61.525 66.667 0.00 0.00 0.00 3.97
222 223 2.493030 GATCGCCTCGTCGGGAAA 59.507 61.111 0.00 0.00 0.00 3.13
223 224 1.589196 GATCGCCTCGTCGGGAAAG 60.589 63.158 0.00 0.00 0.00 2.62
224 225 2.955751 GATCGCCTCGTCGGGAAAGG 62.956 65.000 0.00 0.00 0.00 3.11
225 226 3.755628 CGCCTCGTCGGGAAAGGA 61.756 66.667 0.00 0.00 31.44 3.36
226 227 2.901042 GCCTCGTCGGGAAAGGAT 59.099 61.111 0.00 0.00 31.44 3.24
227 228 1.227292 GCCTCGTCGGGAAAGGATC 60.227 63.158 0.00 0.00 31.44 3.36
228 229 1.677637 GCCTCGTCGGGAAAGGATCT 61.678 60.000 0.00 0.00 31.44 2.75
229 230 0.103208 CCTCGTCGGGAAAGGATCTG 59.897 60.000 0.00 0.00 31.44 2.90
230 231 1.103803 CTCGTCGGGAAAGGATCTGA 58.896 55.000 0.00 0.00 0.00 3.27
231 232 1.476891 CTCGTCGGGAAAGGATCTGAA 59.523 52.381 0.00 0.00 0.00 3.02
232 233 1.476891 TCGTCGGGAAAGGATCTGAAG 59.523 52.381 0.00 0.00 0.00 3.02
233 234 1.476891 CGTCGGGAAAGGATCTGAAGA 59.523 52.381 0.00 0.00 0.00 2.87
234 235 2.101582 CGTCGGGAAAGGATCTGAAGAT 59.898 50.000 0.00 0.00 37.51 2.40
235 236 3.430929 CGTCGGGAAAGGATCTGAAGATT 60.431 47.826 0.00 0.00 34.37 2.40
236 237 4.518249 GTCGGGAAAGGATCTGAAGATTT 58.482 43.478 0.00 0.00 34.37 2.17
237 238 5.671493 GTCGGGAAAGGATCTGAAGATTTA 58.329 41.667 0.00 0.00 34.37 1.40
238 239 6.292150 GTCGGGAAAGGATCTGAAGATTTAT 58.708 40.000 0.00 0.00 34.37 1.40
239 240 6.768381 GTCGGGAAAGGATCTGAAGATTTATT 59.232 38.462 0.00 0.00 34.37 1.40
240 241 7.931948 GTCGGGAAAGGATCTGAAGATTTATTA 59.068 37.037 0.00 0.00 34.37 0.98
241 242 8.150945 TCGGGAAAGGATCTGAAGATTTATTAG 58.849 37.037 0.00 0.00 34.37 1.73
242 243 7.934120 CGGGAAAGGATCTGAAGATTTATTAGT 59.066 37.037 0.00 0.00 34.37 2.24
243 244 9.278978 GGGAAAGGATCTGAAGATTTATTAGTC 57.721 37.037 0.00 0.00 34.37 2.59
244 245 8.983724 GGAAAGGATCTGAAGATTTATTAGTCG 58.016 37.037 0.00 0.00 34.37 4.18
245 246 8.894768 AAAGGATCTGAAGATTTATTAGTCGG 57.105 34.615 0.00 0.00 34.37 4.79
246 247 6.459923 AGGATCTGAAGATTTATTAGTCGGC 58.540 40.000 0.00 0.00 34.37 5.54
247 248 5.346281 GGATCTGAAGATTTATTAGTCGGCG 59.654 44.000 0.00 0.00 34.37 6.46
248 249 4.049186 TCTGAAGATTTATTAGTCGGCGC 58.951 43.478 0.00 0.00 0.00 6.53
249 250 3.128349 TGAAGATTTATTAGTCGGCGCC 58.872 45.455 19.07 19.07 0.00 6.53
250 251 1.779569 AGATTTATTAGTCGGCGCCG 58.220 50.000 42.13 42.13 41.35 6.46
251 252 0.163146 GATTTATTAGTCGGCGCCGC 59.837 55.000 42.78 34.57 39.59 6.53
252 253 1.226030 ATTTATTAGTCGGCGCCGCC 61.226 55.000 42.78 34.53 46.75 6.13
268 269 3.427425 CCATCGCCGTTGCCGAAA 61.427 61.111 0.00 0.00 38.31 3.46
269 270 2.202298 CATCGCCGTTGCCGAAAC 60.202 61.111 0.00 0.00 38.31 2.78
270 271 3.428282 ATCGCCGTTGCCGAAACC 61.428 61.111 0.00 0.00 38.31 3.27
271 272 4.912485 TCGCCGTTGCCGAAACCA 62.912 61.111 0.00 0.00 35.13 3.67
272 273 3.732892 CGCCGTTGCCGAAACCAT 61.733 61.111 0.00 0.00 35.13 3.55
273 274 2.126502 GCCGTTGCCGAAACCATG 60.127 61.111 0.00 0.00 35.13 3.66
274 275 2.622011 GCCGTTGCCGAAACCATGA 61.622 57.895 0.00 0.00 35.13 3.07
275 276 1.209127 CCGTTGCCGAAACCATGAC 59.791 57.895 0.00 0.00 35.13 3.06
276 277 1.154488 CGTTGCCGAAACCATGACG 60.154 57.895 0.00 0.00 35.13 4.35
277 278 1.561717 CGTTGCCGAAACCATGACGA 61.562 55.000 0.00 0.00 35.13 4.20
278 279 0.802494 GTTGCCGAAACCATGACGAT 59.198 50.000 0.00 0.00 32.13 3.73
279 280 0.801872 TTGCCGAAACCATGACGATG 59.198 50.000 0.00 0.00 0.00 3.84
280 281 0.036858 TGCCGAAACCATGACGATGA 60.037 50.000 0.00 0.00 0.00 2.92
281 282 1.083489 GCCGAAACCATGACGATGAA 58.917 50.000 0.00 0.00 0.00 2.57
282 283 1.202031 GCCGAAACCATGACGATGAAC 60.202 52.381 0.00 0.00 0.00 3.18
283 284 2.073056 CCGAAACCATGACGATGAACA 58.927 47.619 0.00 0.00 0.00 3.18
284 285 2.482336 CCGAAACCATGACGATGAACAA 59.518 45.455 0.00 0.00 0.00 2.83
285 286 3.126858 CCGAAACCATGACGATGAACAAT 59.873 43.478 0.00 0.00 0.00 2.71
286 287 4.334443 CGAAACCATGACGATGAACAATC 58.666 43.478 0.00 0.00 0.00 2.67
287 288 4.662145 GAAACCATGACGATGAACAATCC 58.338 43.478 0.00 0.00 30.80 3.01
288 289 3.634397 ACCATGACGATGAACAATCCT 57.366 42.857 0.00 0.00 30.80 3.24
289 290 4.753516 ACCATGACGATGAACAATCCTA 57.246 40.909 0.00 0.00 30.80 2.94
290 291 5.097742 ACCATGACGATGAACAATCCTAA 57.902 39.130 0.00 0.00 30.80 2.69
291 292 5.496556 ACCATGACGATGAACAATCCTAAA 58.503 37.500 0.00 0.00 30.80 1.85
292 293 5.943416 ACCATGACGATGAACAATCCTAAAA 59.057 36.000 0.00 0.00 30.80 1.52
293 294 6.128007 ACCATGACGATGAACAATCCTAAAAC 60.128 38.462 0.00 0.00 30.80 2.43
294 295 5.873179 TGACGATGAACAATCCTAAAACC 57.127 39.130 0.00 0.00 30.80 3.27
295 296 5.556915 TGACGATGAACAATCCTAAAACCT 58.443 37.500 0.00 0.00 30.80 3.50
296 297 6.703319 TGACGATGAACAATCCTAAAACCTA 58.297 36.000 0.00 0.00 30.80 3.08
297 298 7.162761 TGACGATGAACAATCCTAAAACCTAA 58.837 34.615 0.00 0.00 30.80 2.69
298 299 7.662258 TGACGATGAACAATCCTAAAACCTAAA 59.338 33.333 0.00 0.00 30.80 1.85
299 300 8.398878 ACGATGAACAATCCTAAAACCTAAAA 57.601 30.769 0.00 0.00 30.80 1.52
300 301 8.512138 ACGATGAACAATCCTAAAACCTAAAAG 58.488 33.333 0.00 0.00 30.80 2.27
301 302 8.726988 CGATGAACAATCCTAAAACCTAAAAGA 58.273 33.333 0.00 0.00 30.80 2.52
302 303 9.841880 GATGAACAATCCTAAAACCTAAAAGAC 57.158 33.333 0.00 0.00 0.00 3.01
303 304 8.754991 TGAACAATCCTAAAACCTAAAAGACA 57.245 30.769 0.00 0.00 0.00 3.41
304 305 9.191479 TGAACAATCCTAAAACCTAAAAGACAA 57.809 29.630 0.00 0.00 0.00 3.18
307 308 9.981114 ACAATCCTAAAACCTAAAAGACAAATG 57.019 29.630 0.00 0.00 0.00 2.32
308 309 8.925700 CAATCCTAAAACCTAAAAGACAAATGC 58.074 33.333 0.00 0.00 0.00 3.56
309 310 6.988522 TCCTAAAACCTAAAAGACAAATGCC 58.011 36.000 0.00 0.00 0.00 4.40
310 311 6.780522 TCCTAAAACCTAAAAGACAAATGCCT 59.219 34.615 0.00 0.00 0.00 4.75
311 312 7.945664 TCCTAAAACCTAAAAGACAAATGCCTA 59.054 33.333 0.00 0.00 0.00 3.93
312 313 8.581578 CCTAAAACCTAAAAGACAAATGCCTAA 58.418 33.333 0.00 0.00 0.00 2.69
313 314 9.974980 CTAAAACCTAAAAGACAAATGCCTAAA 57.025 29.630 0.00 0.00 0.00 1.85
315 316 9.845740 AAAACCTAAAAGACAAATGCCTAAAAT 57.154 25.926 0.00 0.00 0.00 1.82
318 319 9.923143 ACCTAAAAGACAAATGCCTAAAATAAC 57.077 29.630 0.00 0.00 0.00 1.89
319 320 9.366216 CCTAAAAGACAAATGCCTAAAATAACC 57.634 33.333 0.00 0.00 0.00 2.85
320 321 9.366216 CTAAAAGACAAATGCCTAAAATAACCC 57.634 33.333 0.00 0.00 0.00 4.11
321 322 6.926630 AAGACAAATGCCTAAAATAACCCA 57.073 33.333 0.00 0.00 0.00 4.51
322 323 6.280855 AGACAAATGCCTAAAATAACCCAC 57.719 37.500 0.00 0.00 0.00 4.61
323 324 5.777732 AGACAAATGCCTAAAATAACCCACA 59.222 36.000 0.00 0.00 0.00 4.17
324 325 5.789521 ACAAATGCCTAAAATAACCCACAC 58.210 37.500 0.00 0.00 0.00 3.82
325 326 4.712122 AATGCCTAAAATAACCCACACG 57.288 40.909 0.00 0.00 0.00 4.49
326 327 3.143211 TGCCTAAAATAACCCACACGT 57.857 42.857 0.00 0.00 0.00 4.49
327 328 4.283363 TGCCTAAAATAACCCACACGTA 57.717 40.909 0.00 0.00 0.00 3.57
328 329 4.846040 TGCCTAAAATAACCCACACGTAT 58.154 39.130 0.00 0.00 0.00 3.06
329 330 4.636648 TGCCTAAAATAACCCACACGTATG 59.363 41.667 0.00 0.00 0.00 2.39
330 331 4.035909 GCCTAAAATAACCCACACGTATGG 59.964 45.833 5.69 5.69 39.71 2.74
331 332 5.430007 CCTAAAATAACCCACACGTATGGA 58.570 41.667 16.19 0.00 43.02 3.41
332 333 6.059484 CCTAAAATAACCCACACGTATGGAT 58.941 40.000 16.19 5.33 43.02 3.41
333 334 6.544564 CCTAAAATAACCCACACGTATGGATT 59.455 38.462 16.19 5.92 43.02 3.01
334 335 6.445357 AAAATAACCCACACGTATGGATTC 57.555 37.500 16.19 0.00 43.02 2.52
335 336 2.018542 AACCCACACGTATGGATTCG 57.981 50.000 16.19 0.00 43.02 3.34
336 337 0.177141 ACCCACACGTATGGATTCGG 59.823 55.000 16.19 0.00 43.02 4.30
337 338 1.157870 CCCACACGTATGGATTCGGC 61.158 60.000 16.19 0.00 43.02 5.54
338 339 0.461163 CCACACGTATGGATTCGGCA 60.461 55.000 7.19 0.00 43.02 5.69
339 340 1.364721 CACACGTATGGATTCGGCAA 58.635 50.000 0.00 0.00 0.00 4.52
340 341 1.062002 CACACGTATGGATTCGGCAAC 59.938 52.381 0.00 0.00 0.00 4.17
341 342 1.066430 ACACGTATGGATTCGGCAACT 60.066 47.619 0.00 0.00 0.00 3.16
342 343 1.593006 CACGTATGGATTCGGCAACTC 59.407 52.381 0.00 0.00 0.00 3.01
343 344 1.217882 CGTATGGATTCGGCAACTCC 58.782 55.000 0.00 0.00 0.00 3.85
344 345 1.594331 GTATGGATTCGGCAACTCCC 58.406 55.000 0.00 0.00 0.00 4.30
345 346 0.472471 TATGGATTCGGCAACTCCCC 59.528 55.000 0.00 0.00 0.00 4.81
346 347 1.281925 ATGGATTCGGCAACTCCCCT 61.282 55.000 0.00 0.00 0.00 4.79
347 348 1.153147 GGATTCGGCAACTCCCCTC 60.153 63.158 0.00 0.00 0.00 4.30
348 349 1.602237 GATTCGGCAACTCCCCTCA 59.398 57.895 0.00 0.00 0.00 3.86
349 350 0.744771 GATTCGGCAACTCCCCTCAC 60.745 60.000 0.00 0.00 0.00 3.51
350 351 2.198304 ATTCGGCAACTCCCCTCACC 62.198 60.000 0.00 0.00 0.00 4.02
351 352 3.636231 CGGCAACTCCCCTCACCA 61.636 66.667 0.00 0.00 0.00 4.17
352 353 2.034221 GGCAACTCCCCTCACCAC 59.966 66.667 0.00 0.00 0.00 4.16
353 354 2.034221 GCAACTCCCCTCACCACC 59.966 66.667 0.00 0.00 0.00 4.61
354 355 2.347490 CAACTCCCCTCACCACCG 59.653 66.667 0.00 0.00 0.00 4.94
355 356 2.203182 AACTCCCCTCACCACCGA 59.797 61.111 0.00 0.00 0.00 4.69
356 357 2.214920 AACTCCCCTCACCACCGAC 61.215 63.158 0.00 0.00 0.00 4.79
357 358 3.760035 CTCCCCTCACCACCGACG 61.760 72.222 0.00 0.00 0.00 5.12
358 359 4.289101 TCCCCTCACCACCGACGA 62.289 66.667 0.00 0.00 0.00 4.20
359 360 4.065281 CCCCTCACCACCGACGAC 62.065 72.222 0.00 0.00 0.00 4.34
360 361 2.989824 CCCTCACCACCGACGACT 60.990 66.667 0.00 0.00 0.00 4.18
361 362 2.258591 CCTCACCACCGACGACTG 59.741 66.667 0.00 0.00 0.00 3.51
362 363 2.265904 CCTCACCACCGACGACTGA 61.266 63.158 0.00 0.00 0.00 3.41
363 364 1.210413 CTCACCACCGACGACTGAG 59.790 63.158 0.00 0.00 0.00 3.35
364 365 2.201436 CTCACCACCGACGACTGAGG 62.201 65.000 0.00 0.00 0.00 3.86
365 366 2.203451 ACCACCGACGACTGAGGT 60.203 61.111 0.00 0.00 39.12 3.85
366 367 2.266627 ACCACCGACGACTGAGGTC 61.267 63.158 0.00 0.00 35.85 3.85
376 377 2.487428 CTGAGGTCGTCAGCGGAG 59.513 66.667 9.49 0.00 46.41 4.63
377 378 3.057547 CTGAGGTCGTCAGCGGAGG 62.058 68.421 9.49 0.00 46.41 4.30
378 379 2.750637 GAGGTCGTCAGCGGAGGA 60.751 66.667 5.10 5.10 38.89 3.71
401 402 4.157120 GCGAAGGAAGGCGCCCTA 62.157 66.667 26.15 0.00 46.93 3.53
402 403 2.107141 CGAAGGAAGGCGCCCTAG 59.893 66.667 26.15 7.47 31.13 3.02
403 404 2.203084 GAAGGAAGGCGCCCTAGC 60.203 66.667 26.15 10.04 31.13 3.42
433 434 3.916405 CGAGATCGCCTTTCTTTCTTC 57.084 47.619 0.00 0.00 0.00 2.87
434 435 3.516615 CGAGATCGCCTTTCTTTCTTCT 58.483 45.455 0.00 0.00 0.00 2.85
435 436 3.549873 CGAGATCGCCTTTCTTTCTTCTC 59.450 47.826 0.00 0.00 0.00 2.87
436 437 3.867857 AGATCGCCTTTCTTTCTTCTCC 58.132 45.455 0.00 0.00 0.00 3.71
437 438 3.517500 AGATCGCCTTTCTTTCTTCTCCT 59.482 43.478 0.00 0.00 0.00 3.69
438 439 3.045601 TCGCCTTTCTTTCTTCTCCTG 57.954 47.619 0.00 0.00 0.00 3.86
439 440 2.079925 CGCCTTTCTTTCTTCTCCTGG 58.920 52.381 0.00 0.00 0.00 4.45
440 441 2.289694 CGCCTTTCTTTCTTCTCCTGGA 60.290 50.000 0.00 0.00 0.00 3.86
441 442 3.756117 GCCTTTCTTTCTTCTCCTGGAA 58.244 45.455 0.00 0.00 0.00 3.53
451 452 2.751166 TCTCCTGGAAGAAAGAAGCG 57.249 50.000 0.00 0.00 34.07 4.68
452 453 2.248248 TCTCCTGGAAGAAAGAAGCGA 58.752 47.619 0.00 0.00 34.07 4.93
453 454 2.028930 TCTCCTGGAAGAAAGAAGCGAC 60.029 50.000 0.00 0.00 34.07 5.19
454 455 1.002087 TCCTGGAAGAAAGAAGCGACC 59.998 52.381 0.00 0.00 34.07 4.79
455 456 1.443802 CTGGAAGAAAGAAGCGACCC 58.556 55.000 0.00 0.00 34.07 4.46
456 457 0.320421 TGGAAGAAAGAAGCGACCCG 60.320 55.000 0.00 0.00 0.00 5.28
457 458 0.037605 GGAAGAAAGAAGCGACCCGA 60.038 55.000 0.00 0.00 0.00 5.14
458 459 1.607251 GGAAGAAAGAAGCGACCCGAA 60.607 52.381 0.00 0.00 0.00 4.30
459 460 2.140717 GAAGAAAGAAGCGACCCGAAA 58.859 47.619 0.00 0.00 0.00 3.46
460 461 2.249844 AGAAAGAAGCGACCCGAAAA 57.750 45.000 0.00 0.00 0.00 2.29
461 462 2.567985 AGAAAGAAGCGACCCGAAAAA 58.432 42.857 0.00 0.00 0.00 1.94
495 496 8.542926 ACCCTACGAAATAATTTGGTAGTTAGT 58.457 33.333 2.20 5.06 45.07 2.24
533 534 4.348656 CATTCGTACGTACTGCTGTATGT 58.651 43.478 25.79 25.79 46.85 2.29
570 574 3.234386 GCTGCGAAATACCTGTTCAAAC 58.766 45.455 0.00 0.00 0.00 2.93
575 579 4.794169 CGAAATACCTGTTCAAACCCTTG 58.206 43.478 0.00 0.00 0.00 3.61
576 580 4.277423 CGAAATACCTGTTCAAACCCTTGT 59.723 41.667 0.00 0.00 33.94 3.16
577 581 5.470777 CGAAATACCTGTTCAAACCCTTGTA 59.529 40.000 0.00 0.00 33.94 2.41
579 583 7.334921 CGAAATACCTGTTCAAACCCTTGTATA 59.665 37.037 0.00 0.00 33.94 1.47
648 654 0.741915 CAGTACTCTCGGAGGGAAGC 59.258 60.000 12.82 1.10 33.35 3.86
740 775 1.757699 CTACTTCCCTTCCTTCCTCCG 59.242 57.143 0.00 0.00 0.00 4.63
828 869 1.688884 GCCTGCCTCTCTCCCTCTT 60.689 63.158 0.00 0.00 0.00 2.85
847 888 0.618968 TCTTCTTCCTCCCCTGCCTC 60.619 60.000 0.00 0.00 0.00 4.70
858 899 1.751927 CCTGCCTCCCAATGCTCAC 60.752 63.158 0.00 0.00 0.00 3.51
935 976 1.706575 CAGGAGGGAAGGGAGGAGA 59.293 63.158 0.00 0.00 0.00 3.71
979 1020 3.118592 ACTCTGAAGATTGATTCCGGTCC 60.119 47.826 0.00 0.00 0.00 4.46
980 1021 2.159099 TCTGAAGATTGATTCCGGTCCG 60.159 50.000 3.60 3.60 0.00 4.79
981 1022 0.938008 GAAGATTGATTCCGGTCCGC 59.062 55.000 5.50 0.00 0.00 5.54
982 1023 0.251916 AAGATTGATTCCGGTCCGCA 59.748 50.000 5.50 0.00 0.00 5.69
983 1024 0.179073 AGATTGATTCCGGTCCGCAG 60.179 55.000 5.50 0.00 0.00 5.18
984 1025 1.776034 GATTGATTCCGGTCCGCAGC 61.776 60.000 5.50 0.00 0.00 5.25
985 1026 2.535485 ATTGATTCCGGTCCGCAGCA 62.535 55.000 5.50 0.01 0.00 4.41
986 1027 2.892425 GATTCCGGTCCGCAGCAG 60.892 66.667 5.50 0.00 0.00 4.24
1178 1225 3.800929 CGGAAACCGTTACTTTCTTCC 57.199 47.619 1.80 0.00 42.73 3.46
1194 1241 6.653740 ACTTTCTTCCTTTCCGTTATCGATTT 59.346 34.615 1.71 0.00 39.71 2.17
1245 1304 5.880887 GGGGTAACAATTCGATTCTTCTTCT 59.119 40.000 0.00 0.00 39.74 2.85
1254 1313 8.873830 CAATTCGATTCTTCTTCTTAGTGCTTA 58.126 33.333 0.00 0.00 0.00 3.09
1261 1320 7.730364 TCTTCTTCTTAGTGCTTACCTTTTG 57.270 36.000 0.00 0.00 0.00 2.44
1312 1373 2.124277 AAGATTTTAGTGGGACGGCC 57.876 50.000 0.00 0.00 0.00 6.13
1347 1408 7.280205 CCACGAAATTAACTAAGTTATCCTGCT 59.720 37.037 0.00 0.00 0.00 4.24
1444 1505 3.579709 CGTTCGATTAGGATGATCAGGG 58.420 50.000 0.09 0.00 0.00 4.45
1484 1546 9.347240 CAGTACCTCCATCAGATTTATTCATTT 57.653 33.333 0.00 0.00 0.00 2.32
1549 1611 3.303593 GCAACATACCTCTGAATGCGATG 60.304 47.826 0.00 0.00 0.00 3.84
1550 1612 2.487934 ACATACCTCTGAATGCGATGC 58.512 47.619 0.00 0.00 0.00 3.91
1551 1613 1.458445 CATACCTCTGAATGCGATGCG 59.542 52.381 0.00 0.00 0.00 4.73
1552 1614 0.744281 TACCTCTGAATGCGATGCGA 59.256 50.000 0.00 0.00 0.00 5.10
1553 1615 0.807667 ACCTCTGAATGCGATGCGAC 60.808 55.000 0.00 0.00 0.00 5.19
1554 1616 1.493950 CCTCTGAATGCGATGCGACC 61.494 60.000 0.00 0.00 0.00 4.79
1555 1617 1.493950 CTCTGAATGCGATGCGACCC 61.494 60.000 0.00 0.00 0.00 4.46
1556 1618 2.513666 TGAATGCGATGCGACCCC 60.514 61.111 0.00 0.00 0.00 4.95
1557 1619 2.203070 GAATGCGATGCGACCCCT 60.203 61.111 0.00 0.00 0.00 4.79
1607 1669 1.874562 CTTTCGGACGGACGAGTCT 59.125 57.895 0.00 0.00 44.47 3.24
1664 1729 4.420206 TGCTCCATCAGGTACTATGCTAT 58.580 43.478 0.00 0.00 36.02 2.97
1690 1755 7.667635 TGTAATGTTGGTTCAATTGGACAGATA 59.332 33.333 18.62 5.09 0.00 1.98
1752 1817 1.737793 GCCAGTGTGTGCCTTGTATAC 59.262 52.381 0.00 0.00 0.00 1.47
1841 1923 2.294233 GGCAACGCATGATATGGTCAAT 59.706 45.455 0.00 0.00 40.97 2.57
1854 1936 8.408043 TGATATGGTCAATGAAAGTTTCAACT 57.592 30.769 21.57 9.70 43.95 3.16
2006 2092 3.344515 ACGTCCTAATCTGAAAAAGGCC 58.655 45.455 0.00 0.00 0.00 5.19
2277 2455 3.623703 TCAACCATTGATCCATCCAGTG 58.376 45.455 0.00 0.00 34.08 3.66
2625 2816 1.811558 GCATGATGCCACTACCGATGT 60.812 52.381 6.04 0.00 37.42 3.06
2922 3113 0.546267 ATGAGGAGTGTGGAGTGGCT 60.546 55.000 0.00 0.00 0.00 4.75
3004 3195 9.003658 ACATGATTACTTCTTCCTGTTTTAGTG 57.996 33.333 0.00 0.00 0.00 2.74
3005 3196 9.003658 CATGATTACTTCTTCCTGTTTTAGTGT 57.996 33.333 0.00 0.00 0.00 3.55
3006 3197 8.974060 TGATTACTTCTTCCTGTTTTAGTGTT 57.026 30.769 0.00 0.00 0.00 3.32
3007 3198 9.403583 TGATTACTTCTTCCTGTTTTAGTGTTT 57.596 29.630 0.00 0.00 0.00 2.83
3161 3366 6.194285 TGTGGCTAATTAGGTGGCATAATA 57.806 37.500 14.28 0.00 38.47 0.98
3373 3579 9.104965 GATATCAGTACGCTAAGAGATCAGTAT 57.895 37.037 0.00 0.00 31.10 2.12
3376 3582 8.481974 TCAGTACGCTAAGAGATCAGTATATC 57.518 38.462 0.00 0.00 0.00 1.63
3377 3583 8.315482 TCAGTACGCTAAGAGATCAGTATATCT 58.685 37.037 0.00 0.00 38.95 1.98
3385 3591 5.991933 GAGATCAGTATATCTCTGGGCAA 57.008 43.478 6.61 0.00 45.64 4.52
3386 3592 6.543430 GAGATCAGTATATCTCTGGGCAAT 57.457 41.667 6.61 0.00 45.64 3.56
3387 3593 6.945218 GAGATCAGTATATCTCTGGGCAATT 58.055 40.000 6.61 0.00 45.64 2.32
3388 3594 6.945218 AGATCAGTATATCTCTGGGCAATTC 58.055 40.000 0.00 0.00 30.09 2.17
3389 3595 6.730038 AGATCAGTATATCTCTGGGCAATTCT 59.270 38.462 0.00 0.00 30.09 2.40
3390 3596 6.352016 TCAGTATATCTCTGGGCAATTCTC 57.648 41.667 7.63 0.00 34.15 2.87
3391 3597 5.840693 TCAGTATATCTCTGGGCAATTCTCA 59.159 40.000 7.63 0.00 34.15 3.27
3392 3598 5.931146 CAGTATATCTCTGGGCAATTCTCAC 59.069 44.000 0.00 0.00 0.00 3.51
3393 3599 5.843421 AGTATATCTCTGGGCAATTCTCACT 59.157 40.000 0.00 0.00 0.00 3.41
3394 3600 5.643421 ATATCTCTGGGCAATTCTCACTT 57.357 39.130 0.00 0.00 0.00 3.16
3395 3601 3.340814 TCTCTGGGCAATTCTCACTTC 57.659 47.619 0.00 0.00 0.00 3.01
3396 3602 2.909006 TCTCTGGGCAATTCTCACTTCT 59.091 45.455 0.00 0.00 0.00 2.85
3397 3603 3.328931 TCTCTGGGCAATTCTCACTTCTT 59.671 43.478 0.00 0.00 0.00 2.52
3398 3604 4.532126 TCTCTGGGCAATTCTCACTTCTTA 59.468 41.667 0.00 0.00 0.00 2.10
3399 3605 5.013079 TCTCTGGGCAATTCTCACTTCTTAA 59.987 40.000 0.00 0.00 0.00 1.85
3400 3606 5.819991 TCTGGGCAATTCTCACTTCTTAAT 58.180 37.500 0.00 0.00 0.00 1.40
3401 3607 5.882557 TCTGGGCAATTCTCACTTCTTAATC 59.117 40.000 0.00 0.00 0.00 1.75
3402 3608 5.569355 TGGGCAATTCTCACTTCTTAATCA 58.431 37.500 0.00 0.00 0.00 2.57
3403 3609 6.009589 TGGGCAATTCTCACTTCTTAATCAA 58.990 36.000 0.00 0.00 0.00 2.57
3404 3610 6.664816 TGGGCAATTCTCACTTCTTAATCAAT 59.335 34.615 0.00 0.00 0.00 2.57
3405 3611 6.976925 GGGCAATTCTCACTTCTTAATCAATG 59.023 38.462 0.00 0.00 0.00 2.82
3406 3612 7.148018 GGGCAATTCTCACTTCTTAATCAATGA 60.148 37.037 0.00 0.00 0.00 2.57
3407 3613 8.246180 GGCAATTCTCACTTCTTAATCAATGAA 58.754 33.333 0.00 0.00 0.00 2.57
3408 3614 9.630098 GCAATTCTCACTTCTTAATCAATGAAA 57.370 29.630 0.00 0.00 0.00 2.69
3413 3619 8.246180 TCTCACTTCTTAATCAATGAAAATGGC 58.754 33.333 0.00 0.00 0.00 4.40
3414 3620 7.894708 TCACTTCTTAATCAATGAAAATGGCA 58.105 30.769 0.00 0.00 0.00 4.92
3415 3621 8.366401 TCACTTCTTAATCAATGAAAATGGCAA 58.634 29.630 0.00 0.00 0.00 4.52
3416 3622 8.653338 CACTTCTTAATCAATGAAAATGGCAAG 58.347 33.333 0.00 0.00 0.00 4.01
3417 3623 8.370182 ACTTCTTAATCAATGAAAATGGCAAGT 58.630 29.630 0.00 0.00 0.00 3.16
3418 3624 8.761575 TTCTTAATCAATGAAAATGGCAAGTC 57.238 30.769 0.00 0.00 0.00 3.01
3419 3625 8.125978 TCTTAATCAATGAAAATGGCAAGTCT 57.874 30.769 0.00 0.00 0.00 3.24
3420 3626 8.587608 TCTTAATCAATGAAAATGGCAAGTCTT 58.412 29.630 0.00 0.00 0.00 3.01
3421 3627 9.211485 CTTAATCAATGAAAATGGCAAGTCTTT 57.789 29.630 0.00 0.00 0.00 2.52
3422 3628 9.558396 TTAATCAATGAAAATGGCAAGTCTTTT 57.442 25.926 0.00 0.00 0.00 2.27
3423 3629 6.847956 TCAATGAAAATGGCAAGTCTTTTG 57.152 33.333 1.54 4.22 0.00 2.44
3424 3630 5.236911 TCAATGAAAATGGCAAGTCTTTTGC 59.763 36.000 1.54 3.39 44.22 3.68
3431 3637 2.492019 GCAAGTCTTTTGCCTCGTTT 57.508 45.000 0.54 0.00 39.38 3.60
3432 3638 2.385315 GCAAGTCTTTTGCCTCGTTTC 58.615 47.619 0.54 0.00 39.38 2.78
3433 3639 2.223479 GCAAGTCTTTTGCCTCGTTTCA 60.223 45.455 0.54 0.00 39.38 2.69
3434 3640 3.733684 GCAAGTCTTTTGCCTCGTTTCAA 60.734 43.478 0.54 0.00 39.38 2.69
3435 3641 4.420168 CAAGTCTTTTGCCTCGTTTCAAA 58.580 39.130 0.00 0.00 0.00 2.69
3436 3642 4.712122 AGTCTTTTGCCTCGTTTCAAAA 57.288 36.364 9.63 9.63 39.13 2.44
3437 3643 5.066968 AGTCTTTTGCCTCGTTTCAAAAA 57.933 34.783 10.66 0.00 40.36 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.216990 GGAAGATGGTGGATCTGGGT 58.783 55.000 0.00 0.00 40.89 4.51
1 2 1.142465 CTGGAAGATGGTGGATCTGGG 59.858 57.143 0.00 0.00 40.89 4.45
2 3 2.121948 TCTGGAAGATGGTGGATCTGG 58.878 52.381 0.00 0.00 40.89 3.86
15 16 1.293924 GCACCGATGACATCTGGAAG 58.706 55.000 24.06 18.21 0.00 3.46
16 17 0.612744 TGCACCGATGACATCTGGAA 59.387 50.000 24.06 11.98 0.00 3.53
17 18 0.176449 CTGCACCGATGACATCTGGA 59.824 55.000 24.06 13.45 0.00 3.86
18 19 0.176449 TCTGCACCGATGACATCTGG 59.824 55.000 18.73 18.73 0.00 3.86
19 20 1.284657 GTCTGCACCGATGACATCTG 58.715 55.000 13.45 9.40 0.00 2.90
20 21 0.176680 GGTCTGCACCGATGACATCT 59.823 55.000 13.45 0.00 31.06 2.90
21 22 2.682893 GGTCTGCACCGATGACATC 58.317 57.895 5.28 5.28 31.06 3.06
22 23 4.941609 GGTCTGCACCGATGACAT 57.058 55.556 5.52 0.00 31.06 3.06
34 35 1.400846 GCAGATGCAGATTGTGGTCTG 59.599 52.381 5.51 5.51 46.59 3.51
35 36 1.281287 AGCAGATGCAGATTGTGGTCT 59.719 47.619 7.68 0.00 45.16 3.85
36 37 1.669779 GAGCAGATGCAGATTGTGGTC 59.330 52.381 7.68 0.00 45.16 4.02
37 38 1.681166 GGAGCAGATGCAGATTGTGGT 60.681 52.381 7.68 0.00 45.16 4.16
38 39 1.022735 GGAGCAGATGCAGATTGTGG 58.977 55.000 7.68 0.00 45.16 4.17
39 40 1.671328 CAGGAGCAGATGCAGATTGTG 59.329 52.381 7.68 0.00 45.16 3.33
40 41 1.558294 TCAGGAGCAGATGCAGATTGT 59.442 47.619 7.68 0.00 45.16 2.71
41 42 2.327200 TCAGGAGCAGATGCAGATTG 57.673 50.000 7.68 0.54 45.16 2.67
42 43 2.239150 AGTTCAGGAGCAGATGCAGATT 59.761 45.455 7.68 0.00 45.16 2.40
43 44 1.838715 AGTTCAGGAGCAGATGCAGAT 59.161 47.619 7.68 0.00 45.16 2.90
44 45 1.273759 AGTTCAGGAGCAGATGCAGA 58.726 50.000 7.68 0.00 45.16 4.26
45 46 2.548875 GTAGTTCAGGAGCAGATGCAG 58.451 52.381 7.68 0.00 45.16 4.41
46 47 1.208052 GGTAGTTCAGGAGCAGATGCA 59.792 52.381 7.68 0.00 45.16 3.96
47 48 1.484240 AGGTAGTTCAGGAGCAGATGC 59.516 52.381 0.00 0.00 42.49 3.91
48 49 2.102252 GGAGGTAGTTCAGGAGCAGATG 59.898 54.545 0.00 0.00 0.00 2.90
49 50 2.393646 GGAGGTAGTTCAGGAGCAGAT 58.606 52.381 0.00 0.00 0.00 2.90
50 51 1.619977 GGGAGGTAGTTCAGGAGCAGA 60.620 57.143 0.00 0.00 0.00 4.26
51 52 0.827368 GGGAGGTAGTTCAGGAGCAG 59.173 60.000 0.00 0.00 0.00 4.24
52 53 0.116342 TGGGAGGTAGTTCAGGAGCA 59.884 55.000 0.00 0.00 0.00 4.26
53 54 1.208293 CTTGGGAGGTAGTTCAGGAGC 59.792 57.143 0.00 0.00 0.00 4.70
54 55 1.208293 GCTTGGGAGGTAGTTCAGGAG 59.792 57.143 0.00 0.00 0.00 3.69
55 56 1.203313 AGCTTGGGAGGTAGTTCAGGA 60.203 52.381 0.00 0.00 0.00 3.86
56 57 1.208293 GAGCTTGGGAGGTAGTTCAGG 59.792 57.143 0.00 0.00 32.79 3.86
57 58 1.208293 GGAGCTTGGGAGGTAGTTCAG 59.792 57.143 0.00 0.00 32.79 3.02
58 59 1.276622 GGAGCTTGGGAGGTAGTTCA 58.723 55.000 0.00 0.00 32.79 3.18
59 60 1.066071 GTGGAGCTTGGGAGGTAGTTC 60.066 57.143 0.00 0.00 32.79 3.01
60 61 0.984995 GTGGAGCTTGGGAGGTAGTT 59.015 55.000 0.00 0.00 32.79 2.24
61 62 1.258445 CGTGGAGCTTGGGAGGTAGT 61.258 60.000 0.00 0.00 32.79 2.73
62 63 1.517832 CGTGGAGCTTGGGAGGTAG 59.482 63.158 0.00 0.00 32.79 3.18
63 64 2.656069 GCGTGGAGCTTGGGAGGTA 61.656 63.158 0.00 0.00 44.04 3.08
64 65 4.021925 GCGTGGAGCTTGGGAGGT 62.022 66.667 0.00 0.00 44.04 3.85
85 86 3.386867 GATGGCGTTTGCTCCAGCG 62.387 63.158 0.00 0.00 45.83 5.18
86 87 2.486966 GATGGCGTTTGCTCCAGC 59.513 61.111 0.00 0.00 42.25 4.85
87 88 2.787249 CGATGGCGTTTGCTCCAG 59.213 61.111 0.00 0.00 42.25 3.86
88 89 3.430862 GCGATGGCGTTTGCTCCA 61.431 61.111 0.00 0.00 42.25 3.86
89 90 2.976840 TTGCGATGGCGTTTGCTCC 61.977 57.895 6.47 0.00 44.10 4.70
90 91 1.797537 GTTGCGATGGCGTTTGCTC 60.798 57.895 6.47 0.00 44.10 4.26
91 92 2.255252 GTTGCGATGGCGTTTGCT 59.745 55.556 6.47 0.00 44.10 3.91
92 93 3.165318 CGTTGCGATGGCGTTTGC 61.165 61.111 0.00 0.00 44.10 3.68
93 94 2.501650 CCGTTGCGATGGCGTTTG 60.502 61.111 0.00 0.00 44.10 2.93
112 113 3.775654 CCTGTGTCCTCGGCCTCC 61.776 72.222 0.00 0.00 0.00 4.30
113 114 2.997897 ACCTGTGTCCTCGGCCTC 60.998 66.667 0.00 0.00 0.00 4.70
114 115 2.997897 GACCTGTGTCCTCGGCCT 60.998 66.667 0.00 0.00 35.34 5.19
122 123 0.036010 CCTCATGGTGGACCTGTGTC 60.036 60.000 0.00 0.00 40.98 3.67
123 124 0.473694 TCCTCATGGTGGACCTGTGT 60.474 55.000 4.58 0.00 36.82 3.72
124 125 0.914644 ATCCTCATGGTGGACCTGTG 59.085 55.000 9.90 0.00 36.30 3.66
125 126 0.914644 CATCCTCATGGTGGACCTGT 59.085 55.000 9.90 0.00 36.30 4.00
126 127 0.465097 GCATCCTCATGGTGGACCTG 60.465 60.000 9.90 7.43 36.30 4.00
127 128 1.639635 GGCATCCTCATGGTGGACCT 61.640 60.000 9.90 0.00 36.30 3.85
128 129 1.152881 GGCATCCTCATGGTGGACC 60.153 63.158 9.90 5.40 36.30 4.46
129 130 1.524621 CGGCATCCTCATGGTGGAC 60.525 63.158 9.90 0.66 36.30 4.02
130 131 2.910360 CGGCATCCTCATGGTGGA 59.090 61.111 10.07 10.07 38.06 4.02
131 132 2.903855 GCGGCATCCTCATGGTGG 60.904 66.667 0.00 0.00 34.23 4.61
132 133 2.903855 GGCGGCATCCTCATGGTG 60.904 66.667 3.07 0.00 34.23 4.17
133 134 4.552365 CGGCGGCATCCTCATGGT 62.552 66.667 10.53 0.00 34.23 3.55
150 151 4.481112 CAAAGATGGTGCGGCGGC 62.481 66.667 9.78 9.68 40.52 6.53
151 152 4.481112 GCAAAGATGGTGCGGCGG 62.481 66.667 9.78 0.00 31.20 6.13
152 153 2.981560 AAGCAAAGATGGTGCGGCG 61.982 57.895 0.51 0.51 46.86 6.46
153 154 1.444895 CAAGCAAAGATGGTGCGGC 60.445 57.895 0.00 0.00 46.86 6.53
154 155 0.597568 TTCAAGCAAAGATGGTGCGG 59.402 50.000 0.00 0.00 46.86 5.69
155 156 1.001487 TGTTCAAGCAAAGATGGTGCG 60.001 47.619 0.00 0.00 46.86 5.34
156 157 2.035066 ACTGTTCAAGCAAAGATGGTGC 59.965 45.455 0.00 0.00 42.55 5.01
157 158 3.996150 ACTGTTCAAGCAAAGATGGTG 57.004 42.857 0.00 0.00 37.35 4.17
158 159 4.441913 CCAAACTGTTCAAGCAAAGATGGT 60.442 41.667 0.00 0.00 39.43 3.55
159 160 4.053295 CCAAACTGTTCAAGCAAAGATGG 58.947 43.478 0.00 0.00 0.00 3.51
160 161 4.685924 ACCAAACTGTTCAAGCAAAGATG 58.314 39.130 0.00 0.00 0.00 2.90
161 162 5.343307 AACCAAACTGTTCAAGCAAAGAT 57.657 34.783 0.00 0.00 0.00 2.40
162 163 4.799564 AACCAAACTGTTCAAGCAAAGA 57.200 36.364 0.00 0.00 0.00 2.52
163 164 4.329801 GGAAACCAAACTGTTCAAGCAAAG 59.670 41.667 0.00 0.00 0.00 2.77
164 165 4.249661 GGAAACCAAACTGTTCAAGCAAA 58.750 39.130 0.00 0.00 0.00 3.68
165 166 3.259374 TGGAAACCAAACTGTTCAAGCAA 59.741 39.130 0.00 0.00 0.00 3.91
166 167 2.828520 TGGAAACCAAACTGTTCAAGCA 59.171 40.909 0.00 0.00 0.00 3.91
167 168 3.518634 TGGAAACCAAACTGTTCAAGC 57.481 42.857 0.00 0.00 0.00 4.01
178 179 1.062121 TGGGGTGGATTTGGAAACCAA 60.062 47.619 0.00 0.00 42.29 3.67
179 180 0.563173 TGGGGTGGATTTGGAAACCA 59.437 50.000 0.00 0.00 34.18 3.67
180 181 1.723288 TTGGGGTGGATTTGGAAACC 58.277 50.000 0.00 0.00 0.00 3.27
181 182 3.847671 TTTTGGGGTGGATTTGGAAAC 57.152 42.857 0.00 0.00 0.00 2.78
182 183 3.432326 CGTTTTTGGGGTGGATTTGGAAA 60.432 43.478 0.00 0.00 0.00 3.13
183 184 2.103263 CGTTTTTGGGGTGGATTTGGAA 59.897 45.455 0.00 0.00 0.00 3.53
184 185 1.689273 CGTTTTTGGGGTGGATTTGGA 59.311 47.619 0.00 0.00 0.00 3.53
185 186 1.270571 CCGTTTTTGGGGTGGATTTGG 60.271 52.381 0.00 0.00 0.00 3.28
186 187 1.689273 TCCGTTTTTGGGGTGGATTTG 59.311 47.619 0.00 0.00 0.00 2.32
187 188 2.089600 TCCGTTTTTGGGGTGGATTT 57.910 45.000 0.00 0.00 0.00 2.17
188 189 2.176045 GATCCGTTTTTGGGGTGGATT 58.824 47.619 0.00 0.00 39.47 3.01
189 190 1.847328 GATCCGTTTTTGGGGTGGAT 58.153 50.000 0.00 0.00 41.99 3.41
190 191 0.606944 CGATCCGTTTTTGGGGTGGA 60.607 55.000 0.00 0.00 0.00 4.02
191 192 1.880186 CGATCCGTTTTTGGGGTGG 59.120 57.895 0.00 0.00 0.00 4.61
192 193 1.211709 GCGATCCGTTTTTGGGGTG 59.788 57.895 0.00 0.00 0.00 4.61
193 194 1.974875 GGCGATCCGTTTTTGGGGT 60.975 57.895 0.00 0.00 0.00 4.95
194 195 1.654023 GAGGCGATCCGTTTTTGGGG 61.654 60.000 0.00 0.00 37.47 4.96
195 196 1.800681 GAGGCGATCCGTTTTTGGG 59.199 57.895 0.00 0.00 37.47 4.12
196 197 1.296056 ACGAGGCGATCCGTTTTTGG 61.296 55.000 0.00 0.00 35.21 3.28
197 198 0.094730 GACGAGGCGATCCGTTTTTG 59.905 55.000 0.00 0.00 39.30 2.44
198 199 1.349259 CGACGAGGCGATCCGTTTTT 61.349 55.000 0.00 0.00 39.30 1.94
199 200 1.804326 CGACGAGGCGATCCGTTTT 60.804 57.895 0.00 0.00 39.30 2.43
200 201 2.202570 CGACGAGGCGATCCGTTT 60.203 61.111 0.00 0.00 39.30 3.60
201 202 4.189188 CCGACGAGGCGATCCGTT 62.189 66.667 0.00 0.00 39.30 4.44
204 205 2.955751 CTTTCCCGACGAGGCGATCC 62.956 65.000 0.00 0.00 39.21 3.36
205 206 1.589196 CTTTCCCGACGAGGCGATC 60.589 63.158 0.00 0.00 39.21 3.69
206 207 2.494918 CTTTCCCGACGAGGCGAT 59.505 61.111 0.00 0.00 39.21 4.58
207 208 3.755628 CCTTTCCCGACGAGGCGA 61.756 66.667 0.00 0.00 39.21 5.54
208 209 2.955751 GATCCTTTCCCGACGAGGCG 62.956 65.000 0.00 0.00 39.21 5.52
209 210 1.227292 GATCCTTTCCCGACGAGGC 60.227 63.158 0.00 0.00 39.21 4.70
210 211 0.103208 CAGATCCTTTCCCGACGAGG 59.897 60.000 0.00 0.00 40.63 4.63
211 212 1.103803 TCAGATCCTTTCCCGACGAG 58.896 55.000 0.00 0.00 0.00 4.18
212 213 1.476891 CTTCAGATCCTTTCCCGACGA 59.523 52.381 0.00 0.00 0.00 4.20
213 214 1.476891 TCTTCAGATCCTTTCCCGACG 59.523 52.381 0.00 0.00 0.00 5.12
214 215 3.828875 ATCTTCAGATCCTTTCCCGAC 57.171 47.619 0.00 0.00 0.00 4.79
215 216 4.844349 AAATCTTCAGATCCTTTCCCGA 57.156 40.909 0.00 0.00 32.75 5.14
216 217 7.934120 ACTAATAAATCTTCAGATCCTTTCCCG 59.066 37.037 0.00 0.00 32.75 5.14
217 218 9.278978 GACTAATAAATCTTCAGATCCTTTCCC 57.721 37.037 0.00 0.00 32.75 3.97
218 219 8.983724 CGACTAATAAATCTTCAGATCCTTTCC 58.016 37.037 0.00 0.00 32.75 3.13
219 220 8.983724 CCGACTAATAAATCTTCAGATCCTTTC 58.016 37.037 0.00 0.00 32.75 2.62
220 221 7.442666 GCCGACTAATAAATCTTCAGATCCTTT 59.557 37.037 0.00 0.00 32.75 3.11
221 222 6.931840 GCCGACTAATAAATCTTCAGATCCTT 59.068 38.462 0.00 0.00 32.75 3.36
222 223 6.459923 GCCGACTAATAAATCTTCAGATCCT 58.540 40.000 0.00 0.00 32.75 3.24
223 224 5.346281 CGCCGACTAATAAATCTTCAGATCC 59.654 44.000 0.00 0.00 32.75 3.36
224 225 5.164041 GCGCCGACTAATAAATCTTCAGATC 60.164 44.000 0.00 0.00 32.75 2.75
225 226 4.686554 GCGCCGACTAATAAATCTTCAGAT 59.313 41.667 0.00 0.00 36.07 2.90
226 227 4.049186 GCGCCGACTAATAAATCTTCAGA 58.951 43.478 0.00 0.00 0.00 3.27
227 228 3.184581 GGCGCCGACTAATAAATCTTCAG 59.815 47.826 12.58 0.00 0.00 3.02
228 229 3.128349 GGCGCCGACTAATAAATCTTCA 58.872 45.455 12.58 0.00 0.00 3.02
229 230 2.155155 CGGCGCCGACTAATAAATCTTC 59.845 50.000 44.86 0.00 42.83 2.87
230 231 2.132762 CGGCGCCGACTAATAAATCTT 58.867 47.619 44.86 0.00 42.83 2.40
231 232 1.779569 CGGCGCCGACTAATAAATCT 58.220 50.000 44.86 0.00 42.83 2.40
259 260 0.802494 ATCGTCATGGTTTCGGCAAC 59.198 50.000 0.00 0.00 34.18 4.17
260 261 0.801872 CATCGTCATGGTTTCGGCAA 59.198 50.000 0.00 0.00 0.00 4.52
261 262 0.036858 TCATCGTCATGGTTTCGGCA 60.037 50.000 0.00 0.00 0.00 5.69
262 263 1.083489 TTCATCGTCATGGTTTCGGC 58.917 50.000 0.00 0.00 0.00 5.54
263 264 2.073056 TGTTCATCGTCATGGTTTCGG 58.927 47.619 0.00 0.00 0.00 4.30
264 265 3.804518 TTGTTCATCGTCATGGTTTCG 57.195 42.857 0.00 0.00 0.00 3.46
265 266 4.396166 AGGATTGTTCATCGTCATGGTTTC 59.604 41.667 0.00 0.00 31.73 2.78
266 267 4.335416 AGGATTGTTCATCGTCATGGTTT 58.665 39.130 0.00 0.00 31.73 3.27
267 268 3.955471 AGGATTGTTCATCGTCATGGTT 58.045 40.909 0.00 0.00 31.73 3.67
268 269 3.634397 AGGATTGTTCATCGTCATGGT 57.366 42.857 0.00 0.00 31.73 3.55
269 270 6.258160 GTTTTAGGATTGTTCATCGTCATGG 58.742 40.000 0.00 0.00 32.14 3.66
270 271 6.094048 AGGTTTTAGGATTGTTCATCGTCATG 59.906 38.462 0.00 0.00 32.14 3.07
271 272 6.180472 AGGTTTTAGGATTGTTCATCGTCAT 58.820 36.000 0.00 0.00 32.14 3.06
272 273 5.556915 AGGTTTTAGGATTGTTCATCGTCA 58.443 37.500 0.00 0.00 32.14 4.35
273 274 7.605410 TTAGGTTTTAGGATTGTTCATCGTC 57.395 36.000 0.00 0.00 32.14 4.20
274 275 7.989416 TTTAGGTTTTAGGATTGTTCATCGT 57.011 32.000 0.00 0.00 34.31 3.73
275 276 8.726988 TCTTTTAGGTTTTAGGATTGTTCATCG 58.273 33.333 0.00 0.00 31.73 3.84
276 277 9.841880 GTCTTTTAGGTTTTAGGATTGTTCATC 57.158 33.333 0.00 0.00 0.00 2.92
277 278 9.362151 TGTCTTTTAGGTTTTAGGATTGTTCAT 57.638 29.630 0.00 0.00 0.00 2.57
278 279 8.754991 TGTCTTTTAGGTTTTAGGATTGTTCA 57.245 30.769 0.00 0.00 0.00 3.18
281 282 9.981114 CATTTGTCTTTTAGGTTTTAGGATTGT 57.019 29.630 0.00 0.00 0.00 2.71
282 283 8.925700 GCATTTGTCTTTTAGGTTTTAGGATTG 58.074 33.333 0.00 0.00 0.00 2.67
283 284 8.094548 GGCATTTGTCTTTTAGGTTTTAGGATT 58.905 33.333 0.00 0.00 0.00 3.01
284 285 7.454694 AGGCATTTGTCTTTTAGGTTTTAGGAT 59.545 33.333 0.00 0.00 0.00 3.24
285 286 6.780522 AGGCATTTGTCTTTTAGGTTTTAGGA 59.219 34.615 0.00 0.00 0.00 2.94
286 287 6.993079 AGGCATTTGTCTTTTAGGTTTTAGG 58.007 36.000 0.00 0.00 0.00 2.69
287 288 9.974980 TTTAGGCATTTGTCTTTTAGGTTTTAG 57.025 29.630 0.00 0.00 0.00 1.85
289 290 9.845740 ATTTTAGGCATTTGTCTTTTAGGTTTT 57.154 25.926 0.00 0.00 0.00 2.43
292 293 9.923143 GTTATTTTAGGCATTTGTCTTTTAGGT 57.077 29.630 0.00 0.00 0.00 3.08
293 294 9.366216 GGTTATTTTAGGCATTTGTCTTTTAGG 57.634 33.333 0.00 0.00 0.00 2.69
294 295 9.366216 GGGTTATTTTAGGCATTTGTCTTTTAG 57.634 33.333 0.00 0.00 0.00 1.85
295 296 8.871125 TGGGTTATTTTAGGCATTTGTCTTTTA 58.129 29.630 0.00 0.00 0.00 1.52
296 297 7.659799 GTGGGTTATTTTAGGCATTTGTCTTTT 59.340 33.333 0.00 0.00 0.00 2.27
297 298 7.158697 GTGGGTTATTTTAGGCATTTGTCTTT 58.841 34.615 0.00 0.00 0.00 2.52
298 299 6.268847 TGTGGGTTATTTTAGGCATTTGTCTT 59.731 34.615 0.00 0.00 0.00 3.01
299 300 5.777732 TGTGGGTTATTTTAGGCATTTGTCT 59.222 36.000 0.00 0.00 0.00 3.41
300 301 5.867174 GTGTGGGTTATTTTAGGCATTTGTC 59.133 40.000 0.00 0.00 0.00 3.18
301 302 5.565834 CGTGTGGGTTATTTTAGGCATTTGT 60.566 40.000 0.00 0.00 0.00 2.83
302 303 4.862018 CGTGTGGGTTATTTTAGGCATTTG 59.138 41.667 0.00 0.00 0.00 2.32
303 304 4.525100 ACGTGTGGGTTATTTTAGGCATTT 59.475 37.500 0.00 0.00 0.00 2.32
304 305 4.083565 ACGTGTGGGTTATTTTAGGCATT 58.916 39.130 0.00 0.00 0.00 3.56
305 306 3.692690 ACGTGTGGGTTATTTTAGGCAT 58.307 40.909 0.00 0.00 0.00 4.40
306 307 3.143211 ACGTGTGGGTTATTTTAGGCA 57.857 42.857 0.00 0.00 0.00 4.75
307 308 4.035909 CCATACGTGTGGGTTATTTTAGGC 59.964 45.833 22.66 0.00 35.55 3.93
308 309 5.430007 TCCATACGTGTGGGTTATTTTAGG 58.570 41.667 28.43 1.18 39.80 2.69
309 310 7.517734 CGAATCCATACGTGTGGGTTATTTTAG 60.518 40.741 27.40 12.24 42.57 1.85
310 311 6.258287 CGAATCCATACGTGTGGGTTATTTTA 59.742 38.462 27.40 8.56 42.57 1.52
311 312 5.065474 CGAATCCATACGTGTGGGTTATTTT 59.935 40.000 27.40 7.63 42.57 1.82
312 313 4.573201 CGAATCCATACGTGTGGGTTATTT 59.427 41.667 27.40 14.67 42.57 1.40
313 314 4.124238 CGAATCCATACGTGTGGGTTATT 58.876 43.478 27.40 20.22 42.57 1.40
314 315 3.493699 CCGAATCCATACGTGTGGGTTAT 60.494 47.826 27.40 13.27 42.57 1.89
315 316 2.159071 CCGAATCCATACGTGTGGGTTA 60.159 50.000 27.40 11.48 42.57 2.85
316 317 1.406341 CCGAATCCATACGTGTGGGTT 60.406 52.381 27.65 27.65 45.14 4.11
317 318 0.177141 CCGAATCCATACGTGTGGGT 59.823 55.000 28.43 21.22 39.80 4.51
318 319 1.157870 GCCGAATCCATACGTGTGGG 61.158 60.000 28.43 14.60 39.80 4.61
319 320 0.461163 TGCCGAATCCATACGTGTGG 60.461 55.000 24.19 24.19 40.76 4.17
320 321 1.062002 GTTGCCGAATCCATACGTGTG 59.938 52.381 5.16 5.16 0.00 3.82
321 322 1.066430 AGTTGCCGAATCCATACGTGT 60.066 47.619 0.00 0.00 0.00 4.49
322 323 1.593006 GAGTTGCCGAATCCATACGTG 59.407 52.381 0.00 0.00 0.00 4.49
323 324 1.472728 GGAGTTGCCGAATCCATACGT 60.473 52.381 0.00 0.00 33.08 3.57
324 325 1.217882 GGAGTTGCCGAATCCATACG 58.782 55.000 0.00 0.00 33.08 3.06
325 326 1.594331 GGGAGTTGCCGAATCCATAC 58.406 55.000 0.11 0.00 37.63 2.39
326 327 0.472471 GGGGAGTTGCCGAATCCATA 59.528 55.000 0.11 0.00 37.63 2.74
327 328 1.227383 GGGGAGTTGCCGAATCCAT 59.773 57.895 0.11 0.00 37.63 3.41
328 329 1.910580 GAGGGGAGTTGCCGAATCCA 61.911 60.000 0.11 0.00 37.63 3.41
329 330 1.153147 GAGGGGAGTTGCCGAATCC 60.153 63.158 0.00 0.00 37.63 3.01
330 331 0.744771 GTGAGGGGAGTTGCCGAATC 60.745 60.000 0.00 0.00 37.63 2.52
331 332 1.299976 GTGAGGGGAGTTGCCGAAT 59.700 57.895 0.00 0.00 37.63 3.34
332 333 2.747686 GTGAGGGGAGTTGCCGAA 59.252 61.111 0.00 0.00 37.63 4.30
333 334 3.319198 GGTGAGGGGAGTTGCCGA 61.319 66.667 0.00 0.00 37.63 5.54
334 335 3.636231 TGGTGAGGGGAGTTGCCG 61.636 66.667 0.00 0.00 37.63 5.69
335 336 2.034221 GTGGTGAGGGGAGTTGCC 59.966 66.667 0.00 0.00 0.00 4.52
336 337 2.034221 GGTGGTGAGGGGAGTTGC 59.966 66.667 0.00 0.00 0.00 4.17
337 338 2.214216 TCGGTGGTGAGGGGAGTTG 61.214 63.158 0.00 0.00 0.00 3.16
338 339 2.203182 TCGGTGGTGAGGGGAGTT 59.797 61.111 0.00 0.00 0.00 3.01
339 340 2.603776 GTCGGTGGTGAGGGGAGT 60.604 66.667 0.00 0.00 0.00 3.85
340 341 3.760035 CGTCGGTGGTGAGGGGAG 61.760 72.222 0.00 0.00 0.00 4.30
341 342 4.289101 TCGTCGGTGGTGAGGGGA 62.289 66.667 0.00 0.00 0.00 4.81
342 343 4.065281 GTCGTCGGTGGTGAGGGG 62.065 72.222 0.00 0.00 0.00 4.79
343 344 2.989824 AGTCGTCGGTGGTGAGGG 60.990 66.667 0.00 0.00 0.00 4.30
344 345 2.201436 CTCAGTCGTCGGTGGTGAGG 62.201 65.000 0.00 0.00 32.59 3.86
345 346 1.210413 CTCAGTCGTCGGTGGTGAG 59.790 63.158 0.00 0.00 0.00 3.51
346 347 2.265904 CCTCAGTCGTCGGTGGTGA 61.266 63.158 0.00 0.00 0.00 4.02
347 348 2.258591 CCTCAGTCGTCGGTGGTG 59.741 66.667 0.00 0.00 0.00 4.17
348 349 2.203451 ACCTCAGTCGTCGGTGGT 60.203 61.111 1.27 1.27 32.57 4.16
349 350 2.567049 GACCTCAGTCGTCGGTGG 59.433 66.667 0.00 0.08 32.18 4.61
360 361 3.062466 CCTCCGCTGACGACCTCA 61.062 66.667 0.00 0.00 43.93 3.86
361 362 2.750637 TCCTCCGCTGACGACCTC 60.751 66.667 0.00 0.00 43.93 3.85
362 363 3.063084 GTCCTCCGCTGACGACCT 61.063 66.667 0.00 0.00 43.93 3.85
385 386 2.107141 CTAGGGCGCCTTCCTTCG 59.893 66.667 28.56 6.12 34.61 3.79
386 387 2.203084 GCTAGGGCGCCTTCCTTC 60.203 66.667 28.56 8.41 34.61 3.46
399 400 4.277593 CTCGCCTCCTGCCGCTAG 62.278 72.222 0.00 0.00 36.24 3.42
400 401 4.815108 TCTCGCCTCCTGCCGCTA 62.815 66.667 0.00 0.00 36.24 4.26
402 403 4.959596 GATCTCGCCTCCTGCCGC 62.960 72.222 0.00 0.00 36.24 6.53
403 404 4.637489 CGATCTCGCCTCCTGCCG 62.637 72.222 0.00 0.00 36.24 5.69
413 414 3.516615 AGAAGAAAGAAAGGCGATCTCG 58.483 45.455 0.00 0.00 43.27 4.04
414 415 3.868661 GGAGAAGAAAGAAAGGCGATCTC 59.131 47.826 0.00 0.00 33.12 2.75
415 416 3.517500 AGGAGAAGAAAGAAAGGCGATCT 59.482 43.478 0.00 0.00 0.00 2.75
416 417 3.620821 CAGGAGAAGAAAGAAAGGCGATC 59.379 47.826 0.00 0.00 0.00 3.69
417 418 3.604582 CAGGAGAAGAAAGAAAGGCGAT 58.395 45.455 0.00 0.00 0.00 4.58
418 419 2.289694 CCAGGAGAAGAAAGAAAGGCGA 60.290 50.000 0.00 0.00 0.00 5.54
419 420 2.079925 CCAGGAGAAGAAAGAAAGGCG 58.920 52.381 0.00 0.00 0.00 5.52
420 421 3.425162 TCCAGGAGAAGAAAGAAAGGC 57.575 47.619 0.00 0.00 0.00 4.35
431 432 2.632996 TCGCTTCTTTCTTCCAGGAGAA 59.367 45.455 0.00 0.00 34.00 2.87
432 433 2.028930 GTCGCTTCTTTCTTCCAGGAGA 60.029 50.000 0.00 0.00 0.00 3.71
433 434 2.342179 GTCGCTTCTTTCTTCCAGGAG 58.658 52.381 0.00 0.00 0.00 3.69
434 435 1.002087 GGTCGCTTCTTTCTTCCAGGA 59.998 52.381 0.00 0.00 0.00 3.86
435 436 1.443802 GGTCGCTTCTTTCTTCCAGG 58.556 55.000 0.00 0.00 0.00 4.45
436 437 1.443802 GGGTCGCTTCTTTCTTCCAG 58.556 55.000 0.00 0.00 0.00 3.86
437 438 0.320421 CGGGTCGCTTCTTTCTTCCA 60.320 55.000 0.00 0.00 0.00 3.53
438 439 0.037605 TCGGGTCGCTTCTTTCTTCC 60.038 55.000 0.00 0.00 0.00 3.46
439 440 1.792006 TTCGGGTCGCTTCTTTCTTC 58.208 50.000 0.00 0.00 0.00 2.87
440 441 2.249844 TTTCGGGTCGCTTCTTTCTT 57.750 45.000 0.00 0.00 0.00 2.52
441 442 2.249844 TTTTCGGGTCGCTTCTTTCT 57.750 45.000 0.00 0.00 0.00 2.52
461 462 9.338622 CCAAATTATTTCGTAGGGTTAGAGATT 57.661 33.333 0.00 0.00 0.00 2.40
462 463 8.491958 ACCAAATTATTTCGTAGGGTTAGAGAT 58.508 33.333 0.00 0.00 0.00 2.75
463 464 7.854337 ACCAAATTATTTCGTAGGGTTAGAGA 58.146 34.615 0.00 0.00 0.00 3.10
464 465 9.257651 CTACCAAATTATTTCGTAGGGTTAGAG 57.742 37.037 12.52 0.00 0.00 2.43
465 466 8.761689 ACTACCAAATTATTTCGTAGGGTTAGA 58.238 33.333 20.56 0.00 32.47 2.10
466 467 8.953368 ACTACCAAATTATTTCGTAGGGTTAG 57.047 34.615 20.56 10.65 32.47 2.34
468 469 9.387257 CTAACTACCAAATTATTTCGTAGGGTT 57.613 33.333 20.56 12.93 32.47 4.11
469 470 8.542926 ACTAACTACCAAATTATTTCGTAGGGT 58.457 33.333 20.56 14.71 32.47 4.34
470 471 8.823818 CACTAACTACCAAATTATTTCGTAGGG 58.176 37.037 20.56 14.27 32.47 3.53
471 472 8.333186 GCACTAACTACCAAATTATTTCGTAGG 58.667 37.037 20.56 8.31 32.47 3.18
472 473 9.095065 AGCACTAACTACCAAATTATTTCGTAG 57.905 33.333 16.86 16.86 34.03 3.51
473 474 9.090692 GAGCACTAACTACCAAATTATTTCGTA 57.909 33.333 0.00 0.00 0.00 3.43
474 475 7.065443 GGAGCACTAACTACCAAATTATTTCGT 59.935 37.037 0.00 0.00 0.00 3.85
475 476 7.280205 AGGAGCACTAACTACCAAATTATTTCG 59.720 37.037 0.00 0.00 0.00 3.46
476 477 8.507524 AGGAGCACTAACTACCAAATTATTTC 57.492 34.615 0.00 0.00 0.00 2.17
477 478 7.556635 GGAGGAGCACTAACTACCAAATTATTT 59.443 37.037 0.00 0.00 0.00 1.40
478 479 7.054751 GGAGGAGCACTAACTACCAAATTATT 58.945 38.462 0.00 0.00 0.00 1.40
479 480 6.409349 GGGAGGAGCACTAACTACCAAATTAT 60.409 42.308 0.00 0.00 35.22 1.28
480 481 5.104652 GGGAGGAGCACTAACTACCAAATTA 60.105 44.000 0.00 0.00 35.22 1.40
481 482 4.324331 GGGAGGAGCACTAACTACCAAATT 60.324 45.833 0.00 0.00 35.22 1.82
495 496 1.792757 AATGCCAGTTGGGAGGAGCA 61.793 55.000 0.00 0.00 39.50 4.26
553 554 4.277423 ACAAGGGTTTGAACAGGTATTTCG 59.723 41.667 0.00 0.00 37.73 3.46
554 555 5.784578 ACAAGGGTTTGAACAGGTATTTC 57.215 39.130 0.00 0.00 37.73 2.17
570 574 1.888512 GGCATGCCATGTATACAAGGG 59.111 52.381 32.08 21.19 35.40 3.95
575 579 4.801891 CTGATTTGGCATGCCATGTATAC 58.198 43.478 38.78 24.51 46.64 1.47
576 580 3.256383 GCTGATTTGGCATGCCATGTATA 59.744 43.478 38.78 21.98 46.64 1.47
577 581 2.036733 GCTGATTTGGCATGCCATGTAT 59.963 45.455 38.78 29.29 46.64 2.29
579 583 0.177141 GCTGATTTGGCATGCCATGT 59.823 50.000 38.78 28.94 46.64 3.21
648 654 0.242825 GATGATGGATGGCAATGGCG 59.757 55.000 1.51 0.00 42.47 5.69
718 744 2.292984 GGAGGAAGGAAGGGAAGTAGGA 60.293 54.545 0.00 0.00 0.00 2.94
828 869 0.618968 GAGGCAGGGGAGGAAGAAGA 60.619 60.000 0.00 0.00 0.00 2.87
847 888 4.201851 CGAGATTTTGTAGTGAGCATTGGG 60.202 45.833 0.00 0.00 0.00 4.12
858 899 6.952935 AAGCAAGTAGTCGAGATTTTGTAG 57.047 37.500 0.00 0.00 0.00 2.74
935 976 3.767630 GACCACGGCACAACACCCT 62.768 63.158 0.00 0.00 0.00 4.34
987 1028 3.853330 CTCATGTTGCCGGCGTCG 61.853 66.667 23.90 0.29 0.00 5.12
988 1029 3.499737 CCTCATGTTGCCGGCGTC 61.500 66.667 23.90 17.59 0.00 5.19
989 1030 3.842925 AACCTCATGTTGCCGGCGT 62.843 57.895 23.90 7.85 35.31 5.68
1178 1225 6.043411 AGAGGAAGAAATCGATAACGGAAAG 58.957 40.000 0.00 0.00 40.21 2.62
1194 1241 3.306780 CGTTTAAGGCAGGAAGAGGAAGA 60.307 47.826 0.00 0.00 0.00 2.87
1245 1304 8.283699 AGTTAAACACAAAAGGTAAGCACTAA 57.716 30.769 0.00 0.00 0.00 2.24
1261 1320 8.885722 TCGGTCCAATATTGATTAGTTAAACAC 58.114 33.333 17.23 0.00 0.00 3.32
1278 1339 3.721087 AATCTTTCTGGTCGGTCCAAT 57.279 42.857 0.00 0.00 46.59 3.16
1291 1352 2.422479 GGCCGTCCCACTAAAATCTTTC 59.578 50.000 0.00 0.00 0.00 2.62
1312 1373 1.444836 TAATTTCGTGGGAGCAACCG 58.555 50.000 0.00 0.00 40.11 4.44
1347 1408 2.196595 CCCAACCAATCCCTGAGAGTA 58.803 52.381 0.00 0.00 0.00 2.59
1391 1452 7.466996 CGAGACAAGAACCGACTATACAGTTAT 60.467 40.741 0.00 0.00 34.21 1.89
1444 1505 4.754114 GGAGGTACTGATTGCATTGATCTC 59.246 45.833 0.00 0.00 41.55 2.75
1552 1614 3.626924 GTGAGTGCGACCAGGGGT 61.627 66.667 0.00 0.00 39.44 4.95
1553 1615 3.625897 TGTGAGTGCGACCAGGGG 61.626 66.667 0.00 0.00 0.00 4.79
1554 1616 2.357517 GTGTGAGTGCGACCAGGG 60.358 66.667 0.00 0.00 0.00 4.45
1555 1617 1.665916 CTGTGTGAGTGCGACCAGG 60.666 63.158 0.00 0.00 0.00 4.45
1556 1618 0.313987 TACTGTGTGAGTGCGACCAG 59.686 55.000 0.00 0.00 35.96 4.00
1557 1619 0.966179 ATACTGTGTGAGTGCGACCA 59.034 50.000 0.00 0.00 35.96 4.02
1607 1669 2.892215 TGAGATGAAAATGGCAGCACAA 59.108 40.909 0.00 0.00 0.00 3.33
1664 1729 5.830457 TCTGTCCAATTGAACCAACATTACA 59.170 36.000 7.12 0.00 0.00 2.41
1690 1755 7.684428 GCAGCGAGGGAAAATAAAAATAGGATT 60.684 37.037 0.00 0.00 0.00 3.01
1752 1817 2.481952 CCAGCTTGAAGTCTTCTTTCGG 59.518 50.000 13.67 4.60 33.64 4.30
1811 1886 1.334556 TCATGCGTTGCCTATTGATGC 59.665 47.619 0.00 0.00 0.00 3.91
1841 1923 6.582677 TTTGACTTCCAGTTGAAACTTTCA 57.417 33.333 0.00 0.00 37.08 2.69
1854 1936 4.041567 TGTGGAGCTTCTATTTGACTTCCA 59.958 41.667 0.00 0.00 0.00 3.53
1956 2040 7.096551 GCCAGAAAAAGTGAAAGGCATATAAA 58.903 34.615 0.00 0.00 40.29 1.40
1959 2043 4.081476 GGCCAGAAAAAGTGAAAGGCATAT 60.081 41.667 0.00 0.00 42.26 1.78
1960 2044 3.258123 GGCCAGAAAAAGTGAAAGGCATA 59.742 43.478 0.00 0.00 42.26 3.14
1961 2045 2.037641 GGCCAGAAAAAGTGAAAGGCAT 59.962 45.455 0.00 0.00 42.26 4.40
2057 2143 0.307760 CCACGAGAAACCACTGTTGC 59.692 55.000 0.00 0.00 34.13 4.17
2272 2450 0.447801 GGCGTAACAATCAGCACTGG 59.552 55.000 0.00 0.00 0.00 4.00
2275 2453 0.447801 CCTGGCGTAACAATCAGCAC 59.552 55.000 0.00 0.00 0.00 4.40
2277 2455 1.009829 CTCCTGGCGTAACAATCAGC 58.990 55.000 0.00 0.00 0.00 4.26
2402 2593 5.934625 GTGAGAAGTTGACACCAATGATACT 59.065 40.000 0.00 0.00 34.39 2.12
2407 2598 4.083110 GGATGTGAGAAGTTGACACCAATG 60.083 45.833 0.00 0.00 34.39 2.82
2578 2769 0.798776 CGTACTGCTGCTTTTCCTGG 59.201 55.000 0.00 0.00 0.00 4.45
2625 2816 1.001764 TTCCCTGTCTCGCTACCGA 60.002 57.895 0.00 0.00 42.01 4.69
2922 3113 6.883756 TCACTATTCATGCCACTATTGAACAA 59.116 34.615 0.00 0.00 32.61 2.83
3001 3192 7.259290 ACGAAATCACTAATGACAAAACACT 57.741 32.000 0.00 0.00 37.79 3.55
3002 3193 6.299966 CGACGAAATCACTAATGACAAAACAC 59.700 38.462 0.00 0.00 37.79 3.32
3003 3194 6.359545 CGACGAAATCACTAATGACAAAACA 58.640 36.000 0.00 0.00 37.79 2.83
3004 3195 5.788531 CCGACGAAATCACTAATGACAAAAC 59.211 40.000 0.00 0.00 37.79 2.43
3005 3196 5.697178 TCCGACGAAATCACTAATGACAAAA 59.303 36.000 0.00 0.00 37.79 2.44
3006 3197 5.231702 TCCGACGAAATCACTAATGACAAA 58.768 37.500 0.00 0.00 37.79 2.83
3007 3198 4.811908 TCCGACGAAATCACTAATGACAA 58.188 39.130 0.00 0.00 37.79 3.18
3008 3199 4.443913 TCCGACGAAATCACTAATGACA 57.556 40.909 0.00 0.00 37.79 3.58
3161 3366 2.365293 GCAGTCCCCAGTTTGTTTCAAT 59.635 45.455 0.00 0.00 0.00 2.57
3373 3579 4.718774 AGAAGTGAGAATTGCCCAGAGATA 59.281 41.667 0.00 0.00 0.00 1.98
3374 3580 3.522750 AGAAGTGAGAATTGCCCAGAGAT 59.477 43.478 0.00 0.00 0.00 2.75
3375 3581 2.909006 AGAAGTGAGAATTGCCCAGAGA 59.091 45.455 0.00 0.00 0.00 3.10
3376 3582 3.347077 AGAAGTGAGAATTGCCCAGAG 57.653 47.619 0.00 0.00 0.00 3.35
3377 3583 3.795688 AAGAAGTGAGAATTGCCCAGA 57.204 42.857 0.00 0.00 0.00 3.86
3378 3584 5.649395 TGATTAAGAAGTGAGAATTGCCCAG 59.351 40.000 0.00 0.00 0.00 4.45
3379 3585 5.569355 TGATTAAGAAGTGAGAATTGCCCA 58.431 37.500 0.00 0.00 0.00 5.36
3380 3586 6.515272 TTGATTAAGAAGTGAGAATTGCCC 57.485 37.500 0.00 0.00 0.00 5.36
3381 3587 7.765307 TCATTGATTAAGAAGTGAGAATTGCC 58.235 34.615 0.00 0.00 0.00 4.52
3382 3588 9.630098 TTTCATTGATTAAGAAGTGAGAATTGC 57.370 29.630 0.00 0.00 0.00 3.56
3387 3593 8.246180 GCCATTTTCATTGATTAAGAAGTGAGA 58.754 33.333 0.00 0.00 0.00 3.27
3388 3594 8.030692 TGCCATTTTCATTGATTAAGAAGTGAG 58.969 33.333 0.00 0.00 0.00 3.51
3389 3595 7.894708 TGCCATTTTCATTGATTAAGAAGTGA 58.105 30.769 0.00 0.00 0.00 3.41
3390 3596 8.537049 TTGCCATTTTCATTGATTAAGAAGTG 57.463 30.769 0.00 0.00 0.00 3.16
3391 3597 8.370182 ACTTGCCATTTTCATTGATTAAGAAGT 58.630 29.630 0.00 0.00 0.00 3.01
3392 3598 8.767478 ACTTGCCATTTTCATTGATTAAGAAG 57.233 30.769 0.00 0.00 0.00 2.85
3393 3599 8.587608 AGACTTGCCATTTTCATTGATTAAGAA 58.412 29.630 0.00 0.00 0.00 2.52
3394 3600 8.125978 AGACTTGCCATTTTCATTGATTAAGA 57.874 30.769 0.00 0.00 0.00 2.10
3395 3601 8.767478 AAGACTTGCCATTTTCATTGATTAAG 57.233 30.769 0.00 0.00 0.00 1.85
3396 3602 9.558396 AAAAGACTTGCCATTTTCATTGATTAA 57.442 25.926 0.00 0.00 0.00 1.40
3397 3603 8.991026 CAAAAGACTTGCCATTTTCATTGATTA 58.009 29.630 0.00 0.00 0.00 1.75
3398 3604 7.520937 GCAAAAGACTTGCCATTTTCATTGATT 60.521 33.333 0.00 0.00 39.38 2.57
3399 3605 6.072893 GCAAAAGACTTGCCATTTTCATTGAT 60.073 34.615 0.00 0.00 39.38 2.57
3400 3606 5.236911 GCAAAAGACTTGCCATTTTCATTGA 59.763 36.000 0.00 0.00 39.38 2.57
3401 3607 5.445845 GCAAAAGACTTGCCATTTTCATTG 58.554 37.500 0.00 0.00 39.38 2.82
3402 3608 5.678132 GCAAAAGACTTGCCATTTTCATT 57.322 34.783 0.00 0.00 39.38 2.57
3412 3618 2.223479 TGAAACGAGGCAAAAGACTTGC 60.223 45.455 0.78 0.78 44.22 4.01
3413 3619 3.691049 TGAAACGAGGCAAAAGACTTG 57.309 42.857 0.00 0.00 0.00 3.16
3414 3620 4.712122 TTTGAAACGAGGCAAAAGACTT 57.288 36.364 0.00 0.00 31.64 3.01
3415 3621 4.712122 TTTTGAAACGAGGCAAAAGACT 57.288 36.364 0.00 0.00 38.60 3.24
3437 3643 8.914011 GCCAAAATACCCAGAGATATACTTTTT 58.086 33.333 0.00 0.00 0.00 1.94
3438 3644 7.505923 GGCCAAAATACCCAGAGATATACTTTT 59.494 37.037 0.00 0.00 0.00 2.27
3439 3645 7.004691 GGCCAAAATACCCAGAGATATACTTT 58.995 38.462 0.00 0.00 0.00 2.66
3440 3646 6.102615 TGGCCAAAATACCCAGAGATATACTT 59.897 38.462 0.61 0.00 0.00 2.24
3441 3647 5.610982 TGGCCAAAATACCCAGAGATATACT 59.389 40.000 0.61 0.00 0.00 2.12
3442 3648 5.876357 TGGCCAAAATACCCAGAGATATAC 58.124 41.667 0.61 0.00 0.00 1.47
3443 3649 6.523035 TTGGCCAAAATACCCAGAGATATA 57.477 37.500 17.98 0.00 0.00 0.86
3444 3650 5.402054 TTGGCCAAAATACCCAGAGATAT 57.598 39.130 17.98 0.00 0.00 1.63
3542 3749 1.001068 TGACCGTCCGTCTATTGCAAA 59.999 47.619 1.71 0.00 42.49 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.