Multiple sequence alignment - TraesCS2B01G296900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G296900 chr2B 100.000 6485 0 0 1 6485 415353421 415359905 0.000000e+00 11976.0
1 TraesCS2B01G296900 chr2B 84.122 296 31 7 1 294 701509704 701509423 8.290000e-69 272.0
2 TraesCS2B01G296900 chr6D 92.331 2269 132 21 2460 4688 441765306 441767572 0.000000e+00 3188.0
3 TraesCS2B01G296900 chr6D 90.775 2244 161 21 2461 4688 126836090 126838303 0.000000e+00 2955.0
4 TraesCS2B01G296900 chr6D 91.135 1929 130 14 2461 4355 302637501 302639422 0.000000e+00 2577.0
5 TraesCS2B01G296900 chr7D 92.250 2258 139 16 2458 4688 197921874 197924122 0.000000e+00 3168.0
6 TraesCS2B01G296900 chr7D 90.748 2086 152 11 2461 4511 169472001 169469922 0.000000e+00 2745.0
7 TraesCS2B01G296900 chr7D 89.750 761 50 14 2461 3193 390155221 390154461 0.000000e+00 948.0
8 TraesCS2B01G296900 chr4B 92.063 2268 126 16 2460 4688 316296021 316298273 0.000000e+00 3142.0
9 TraesCS2B01G296900 chr3B 91.851 2258 134 20 2466 4688 335099147 335096905 0.000000e+00 3105.0
10 TraesCS2B01G296900 chr3B 89.208 2122 178 19 2584 4688 753121039 753123126 0.000000e+00 2603.0
11 TraesCS2B01G296900 chr3B 96.970 33 1 0 5743 5775 48671157 48671125 1.000000e-03 56.5
12 TraesCS2B01G296900 chr3D 91.626 2269 143 18 2461 4689 248807971 248810232 0.000000e+00 3094.0
13 TraesCS2B01G296900 chr3D 92.737 1129 63 11 2458 3583 519690805 519691917 0.000000e+00 1613.0
14 TraesCS2B01G296900 chr3D 86.555 119 13 2 2461 2579 519709229 519709344 1.900000e-25 128.0
15 TraesCS2B01G296900 chr3D 79.365 189 27 12 2478 2661 426443875 426443694 8.830000e-24 122.0
16 TraesCS2B01G296900 chr5D 91.567 2265 133 22 2461 4688 58263041 58265284 0.000000e+00 3072.0
17 TraesCS2B01G296900 chr5D 91.233 2270 145 23 2461 4689 256746275 256744019 0.000000e+00 3040.0
18 TraesCS2B01G296900 chr2D 95.766 1866 56 4 599 2464 350065907 350064065 0.000000e+00 2987.0
19 TraesCS2B01G296900 chr2D 97.030 808 24 0 5013 5820 350058846 350058039 0.000000e+00 1360.0
20 TraesCS2B01G296900 chr2D 91.938 583 28 9 5828 6410 350056232 350055669 0.000000e+00 798.0
21 TraesCS2B01G296900 chr2D 87.317 615 58 10 1 599 479055403 479056013 0.000000e+00 686.0
22 TraesCS2B01G296900 chr2D 87.602 613 49 17 1 600 582548727 582548129 0.000000e+00 686.0
23 TraesCS2B01G296900 chr2D 96.667 330 10 1 4689 5018 350064073 350063745 1.230000e-151 547.0
24 TraesCS2B01G296900 chr2D 84.289 401 45 8 1 385 637135248 637135646 6.140000e-100 375.0
25 TraesCS2B01G296900 chr2D 89.844 128 13 0 6275 6402 350055369 350055242 1.450000e-36 165.0
26 TraesCS2B01G296900 chr2D 96.970 33 1 0 5745 5777 90713774 90713742 1.000000e-03 56.5
27 TraesCS2B01G296900 chr2D 96.875 32 1 0 5746 5777 90505272 90505241 3.000000e-03 54.7
28 TraesCS2B01G296900 chr2A 96.247 1812 51 7 665 2464 467233903 467232097 0.000000e+00 2953.0
29 TraesCS2B01G296900 chr2A 94.179 1151 45 6 5252 6402 467231384 467230256 0.000000e+00 1735.0
30 TraesCS2B01G296900 chr2A 96.643 566 18 1 4689 5254 467232105 467231541 0.000000e+00 939.0
31 TraesCS2B01G296900 chr2A 83.828 606 62 18 1 599 260544044 260543468 1.590000e-150 544.0
32 TraesCS2B01G296900 chr2A 96.970 33 1 0 613 645 467233977 467233945 1.000000e-03 56.5
33 TraesCS2B01G296900 chr2A 100.000 28 0 0 5743 5770 743987902 743987929 1.200000e-02 52.8
34 TraesCS2B01G296900 chr1A 90.395 1999 128 23 2734 4692 283846493 283848467 0.000000e+00 2569.0
35 TraesCS2B01G296900 chr1A 96.970 33 1 0 5744 5776 573813626 573813594 1.000000e-03 56.5
36 TraesCS2B01G296900 chr1D 91.134 1782 120 10 2461 4217 212521418 212523186 0.000000e+00 2381.0
37 TraesCS2B01G296900 chr1B 93.367 603 34 6 1 599 294426276 294425676 0.000000e+00 887.0
38 TraesCS2B01G296900 chr1B 97.059 34 1 0 5743 5776 493871936 493871969 2.530000e-04 58.4
39 TraesCS2B01G296900 chr5B 86.224 617 44 17 1 601 706364169 706364760 1.190000e-176 630.0
40 TraesCS2B01G296900 chr5B 98.655 223 3 0 1 223 14165105 14164883 4.710000e-106 396.0
41 TraesCS2B01G296900 chr5B 96.825 126 4 0 2464 2589 418468170 418468045 1.830000e-50 211.0
42 TraesCS2B01G296900 chr6A 85.155 613 45 14 1 598 48262963 48263544 2.610000e-163 586.0
43 TraesCS2B01G296900 chr3A 85.321 436 33 15 176 599 681739502 681739918 7.770000e-114 422.0
44 TraesCS2B01G296900 chr3A 88.462 312 25 9 294 599 7213051 7212745 3.690000e-97 366.0
45 TraesCS2B01G296900 chr7B 83.080 461 58 7 1 448 272318018 272317565 1.010000e-107 401.0
46 TraesCS2B01G296900 chr4A 85.827 381 40 10 1 371 527489817 527489441 6.100000e-105 392.0
47 TraesCS2B01G296900 chr6B 86.555 357 22 14 2461 2795 164214020 164214372 2.860000e-98 370.0
48 TraesCS2B01G296900 chr6B 88.387 310 28 8 295 599 714260992 714261298 3.690000e-97 366.0
49 TraesCS2B01G296900 chr6B 96.970 33 1 0 5745 5777 177274398 177274366 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G296900 chr2B 415353421 415359905 6484 False 11976.000000 11976 100.000000 1 6485 1 chr2B.!!$F1 6484
1 TraesCS2B01G296900 chr6D 441765306 441767572 2266 False 3188.000000 3188 92.331000 2460 4688 1 chr6D.!!$F3 2228
2 TraesCS2B01G296900 chr6D 126836090 126838303 2213 False 2955.000000 2955 90.775000 2461 4688 1 chr6D.!!$F1 2227
3 TraesCS2B01G296900 chr6D 302637501 302639422 1921 False 2577.000000 2577 91.135000 2461 4355 1 chr6D.!!$F2 1894
4 TraesCS2B01G296900 chr7D 197921874 197924122 2248 False 3168.000000 3168 92.250000 2458 4688 1 chr7D.!!$F1 2230
5 TraesCS2B01G296900 chr7D 169469922 169472001 2079 True 2745.000000 2745 90.748000 2461 4511 1 chr7D.!!$R1 2050
6 TraesCS2B01G296900 chr7D 390154461 390155221 760 True 948.000000 948 89.750000 2461 3193 1 chr7D.!!$R2 732
7 TraesCS2B01G296900 chr4B 316296021 316298273 2252 False 3142.000000 3142 92.063000 2460 4688 1 chr4B.!!$F1 2228
8 TraesCS2B01G296900 chr3B 335096905 335099147 2242 True 3105.000000 3105 91.851000 2466 4688 1 chr3B.!!$R2 2222
9 TraesCS2B01G296900 chr3B 753121039 753123126 2087 False 2603.000000 2603 89.208000 2584 4688 1 chr3B.!!$F1 2104
10 TraesCS2B01G296900 chr3D 248807971 248810232 2261 False 3094.000000 3094 91.626000 2461 4689 1 chr3D.!!$F1 2228
11 TraesCS2B01G296900 chr3D 519690805 519691917 1112 False 1613.000000 1613 92.737000 2458 3583 1 chr3D.!!$F2 1125
12 TraesCS2B01G296900 chr5D 58263041 58265284 2243 False 3072.000000 3072 91.567000 2461 4688 1 chr5D.!!$F1 2227
13 TraesCS2B01G296900 chr5D 256744019 256746275 2256 True 3040.000000 3040 91.233000 2461 4689 1 chr5D.!!$R1 2228
14 TraesCS2B01G296900 chr2D 350063745 350065907 2162 True 1767.000000 2987 96.216500 599 5018 2 chr2D.!!$R5 4419
15 TraesCS2B01G296900 chr2D 350055242 350058846 3604 True 774.333333 1360 92.937333 5013 6410 3 chr2D.!!$R4 1397
16 TraesCS2B01G296900 chr2D 479055403 479056013 610 False 686.000000 686 87.317000 1 599 1 chr2D.!!$F1 598
17 TraesCS2B01G296900 chr2D 582548129 582548727 598 True 686.000000 686 87.602000 1 600 1 chr2D.!!$R3 599
18 TraesCS2B01G296900 chr2A 467230256 467233977 3721 True 1420.875000 2953 96.009750 613 6402 4 chr2A.!!$R2 5789
19 TraesCS2B01G296900 chr2A 260543468 260544044 576 True 544.000000 544 83.828000 1 599 1 chr2A.!!$R1 598
20 TraesCS2B01G296900 chr1A 283846493 283848467 1974 False 2569.000000 2569 90.395000 2734 4692 1 chr1A.!!$F1 1958
21 TraesCS2B01G296900 chr1D 212521418 212523186 1768 False 2381.000000 2381 91.134000 2461 4217 1 chr1D.!!$F1 1756
22 TraesCS2B01G296900 chr1B 294425676 294426276 600 True 887.000000 887 93.367000 1 599 1 chr1B.!!$R1 598
23 TraesCS2B01G296900 chr5B 706364169 706364760 591 False 630.000000 630 86.224000 1 601 1 chr5B.!!$F1 600
24 TraesCS2B01G296900 chr6A 48262963 48263544 581 False 586.000000 586 85.155000 1 598 1 chr6A.!!$F1 597

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
781 827 0.309302 CATCTACGTGCTCCTCTCGG 59.691 60.0 0.00 0.0 36.12 4.63 F
2414 2486 0.035439 TCCGATCCTTCCTGGCAAAC 60.035 55.0 0.00 0.0 35.26 2.93 F
2962 3083 1.050988 ATGTAGTCCGCAGCCTCCAT 61.051 55.0 0.00 0.0 0.00 3.41 F
3676 3858 0.323087 TGGAGAATCTCGACGGTGGA 60.323 55.0 3.96 0.0 33.73 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2596 2712 2.039951 ACCTAACCCTAGCCGCCA 59.960 61.111 0.00 0.00 0.00 5.69 R
3375 3553 0.107831 CCTTCCGTTCCTCACCACAA 59.892 55.000 0.00 0.00 0.00 3.33 R
4030 4257 2.839098 CCACCACCAGCAACCTCT 59.161 61.111 0.00 0.00 0.00 3.69 R
5640 6043 1.750018 CACCTTGGCATGATCGGCA 60.750 57.895 10.82 2.39 40.11 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 39 8.934825 TCTGAACAAAATTTTGAAAACTGGAAG 58.065 29.630 32.20 16.67 40.55 3.46
143 147 9.744468 ACAACCAGAACAATATTTAAGTTTGTC 57.256 29.630 0.00 0.00 32.66 3.18
240 247 7.215696 TGCATAGTTTTTGAAACTTTGAACG 57.784 32.000 20.54 3.05 33.09 3.95
256 263 7.693020 ACTTTGAACGAATTTTGGAAAAATGG 58.307 30.769 0.00 0.00 0.00 3.16
264 271 8.773645 ACGAATTTTGGAAAAATGGAATCTTTC 58.226 29.630 0.00 0.00 32.55 2.62
294 302 5.811399 TTGTGTACAGTTTTGTGAAGGAG 57.189 39.130 0.00 0.00 38.23 3.69
609 633 1.103398 GGGATTTCCATGTCCGGCTG 61.103 60.000 0.00 0.00 37.91 4.85
610 634 1.728490 GGATTTCCATGTCCGGCTGC 61.728 60.000 0.00 0.00 35.64 5.25
611 635 1.728490 GATTTCCATGTCCGGCTGCC 61.728 60.000 9.11 9.11 0.00 4.85
649 673 1.272147 GGTTGCCTGAGGAAACCAGAT 60.272 52.381 32.34 0.00 42.44 2.90
670 716 1.460273 GCCCTCGAGGAGTCCATCTC 61.460 65.000 33.39 6.04 42.07 2.75
781 827 0.309302 CATCTACGTGCTCCTCTCGG 59.691 60.000 0.00 0.00 36.12 4.63
793 839 1.760086 CTCTCGGCCTCCTCCACAT 60.760 63.158 0.00 0.00 0.00 3.21
815 861 0.469892 CCCCTTTGCTTGGTTGGTCT 60.470 55.000 0.00 0.00 0.00 3.85
863 909 0.958822 CACCACCAAACCCTACTTGC 59.041 55.000 0.00 0.00 0.00 4.01
1109 1155 4.463879 CCAGAGCCTGCCCTCACG 62.464 72.222 0.00 0.00 34.26 4.35
1113 1159 0.978146 AGAGCCTGCCCTCACGTATT 60.978 55.000 0.00 0.00 34.26 1.89
1130 1176 5.070580 CACGTATTATTTCTCCCCTCCTCTT 59.929 44.000 0.00 0.00 0.00 2.85
1325 1371 3.345414 ACGTCCGTGATTTACTCTCTCT 58.655 45.455 0.00 0.00 0.00 3.10
1326 1372 3.757493 ACGTCCGTGATTTACTCTCTCTT 59.243 43.478 0.00 0.00 0.00 2.85
1327 1373 4.217983 ACGTCCGTGATTTACTCTCTCTTT 59.782 41.667 0.00 0.00 0.00 2.52
1328 1374 4.794246 CGTCCGTGATTTACTCTCTCTTTC 59.206 45.833 0.00 0.00 0.00 2.62
1329 1375 5.392165 CGTCCGTGATTTACTCTCTCTTTCT 60.392 44.000 0.00 0.00 0.00 2.52
1330 1376 6.031471 GTCCGTGATTTACTCTCTCTTTCTC 58.969 44.000 0.00 0.00 0.00 2.87
1331 1377 5.946972 TCCGTGATTTACTCTCTCTTTCTCT 59.053 40.000 0.00 0.00 0.00 3.10
1332 1378 6.094325 TCCGTGATTTACTCTCTCTTTCTCTC 59.906 42.308 0.00 0.00 0.00 3.20
1333 1379 6.094881 CCGTGATTTACTCTCTCTTTCTCTCT 59.905 42.308 0.00 0.00 0.00 3.10
1334 1380 7.186804 CGTGATTTACTCTCTCTTTCTCTCTC 58.813 42.308 0.00 0.00 0.00 3.20
1335 1381 7.065803 CGTGATTTACTCTCTCTTTCTCTCTCT 59.934 40.741 0.00 0.00 0.00 3.10
1336 1382 8.398665 GTGATTTACTCTCTCTTTCTCTCTCTC 58.601 40.741 0.00 0.00 0.00 3.20
1337 1383 7.556275 TGATTTACTCTCTCTTTCTCTCTCTCC 59.444 40.741 0.00 0.00 0.00 3.71
1338 1384 4.236527 ACTCTCTCTTTCTCTCTCTCCC 57.763 50.000 0.00 0.00 0.00 4.30
1348 1418 3.379452 TCTCTCTCTCCCTTCCAATTCC 58.621 50.000 0.00 0.00 0.00 3.01
1352 1422 4.080129 TCTCTCTCCCTTCCAATTCCATTG 60.080 45.833 0.00 0.00 39.94 2.82
1491 1561 2.958818 TCTGGACGATAGGTATGGCTT 58.041 47.619 0.00 0.00 43.77 4.35
1518 1588 2.091885 TCTCCCACCTGGAATTATTGGC 60.092 50.000 0.00 0.00 44.57 4.52
1550 1620 3.057526 GCAGAGTTTTGGCGGATTTTAGT 60.058 43.478 0.00 0.00 0.00 2.24
1557 1627 6.657541 AGTTTTGGCGGATTTTAGTTATCTGA 59.342 34.615 0.00 0.00 31.36 3.27
1579 1649 5.189736 TGATTGGGTTAGTGCAGAACTAGAT 59.810 40.000 10.42 0.00 42.38 1.98
1580 1650 5.499004 TTGGGTTAGTGCAGAACTAGATT 57.501 39.130 10.42 0.00 42.38 2.40
1631 1701 4.558178 CAGTGGCACATTTAATGCAGAAA 58.442 39.130 21.41 0.00 45.27 2.52
1651 1721 7.900352 GCAGAAATCATCTACGAGTTTTTACTG 59.100 37.037 0.00 0.00 36.32 2.74
1677 1747 1.969923 AGCTCTTCTTCACTCTGCAGT 59.030 47.619 14.67 0.00 0.00 4.40
1891 1961 6.016777 GGTTTATCAAGCATTAGGGAGACATG 60.017 42.308 0.00 0.00 0.00 3.21
1921 1991 2.612212 CCATTACGTCATTAGCGCCTTT 59.388 45.455 2.29 0.00 0.00 3.11
2193 2263 1.272769 GTAGTCAGTTCCGCCTCACTT 59.727 52.381 0.00 0.00 0.00 3.16
2198 2268 1.966451 GTTCCGCCTCACTTGTGGG 60.966 63.158 0.64 0.00 34.09 4.61
2214 2284 3.104512 TGTGGGTCCCTGTATGTCTAAG 58.895 50.000 10.00 0.00 0.00 2.18
2376 2448 1.597742 TTTGGTCTTGCTCTGCTGTC 58.402 50.000 0.00 0.00 0.00 3.51
2414 2486 0.035439 TCCGATCCTTCCTGGCAAAC 60.035 55.000 0.00 0.00 35.26 2.93
2456 2528 5.526506 GAAATTATCCAAATGAGCTGGCT 57.473 39.130 0.00 0.00 33.63 4.75
2596 2712 3.966930 GAGGGAGGGAGCAGGACGT 62.967 68.421 0.00 0.00 0.00 4.34
2622 2739 3.477346 GGGTTAGGTCTCCCGGCC 61.477 72.222 0.00 0.00 33.97 6.13
2896 3014 1.594293 CAAACACCTCCGCGTCAGT 60.594 57.895 4.92 0.00 0.00 3.41
2962 3083 1.050988 ATGTAGTCCGCAGCCTCCAT 61.051 55.000 0.00 0.00 0.00 3.41
3193 3346 4.889112 CGCCTGCTGGATGGCCAT 62.889 66.667 20.96 20.96 44.91 4.40
3375 3553 1.577328 CGGTTGGCGAAGTCTTGCAT 61.577 55.000 0.00 0.00 0.00 3.96
3402 3580 2.981350 GAACGGAAGGCGCCCAAA 60.981 61.111 26.15 0.00 0.00 3.28
3452 3630 3.494336 CGAAGCGCAAGAGGCAGG 61.494 66.667 11.47 0.00 45.17 4.85
3514 3695 2.231478 CTGATCGAGGGCGTAATACCAT 59.769 50.000 0.00 0.00 38.98 3.55
3564 3745 4.530857 GATCCAGGTGCGGTCGGG 62.531 72.222 0.00 0.00 0.00 5.14
3626 3808 3.508840 GCCAATTCAGGGCGTCGG 61.509 66.667 0.00 0.00 42.39 4.79
3669 3851 3.892284 ACTCTAGCTTGGAGAATCTCGA 58.108 45.455 18.98 0.00 35.10 4.04
3676 3858 0.323087 TGGAGAATCTCGACGGTGGA 60.323 55.000 3.96 0.00 33.73 4.02
3709 3891 1.268283 TGGGCGGGTATGTGTCATCA 61.268 55.000 0.00 0.00 0.00 3.07
3772 3954 1.906574 AGAGTACCGCCATGGAAAAGA 59.093 47.619 18.40 0.00 42.00 2.52
3804 3986 4.828296 ATCGTAGGGACCCGCGGT 62.828 66.667 26.12 17.57 39.44 5.68
3964 4149 2.858476 ACCTGGTGGATGGGCACA 60.858 61.111 0.00 0.00 37.04 4.57
4005 4190 4.899239 CGGCCCTGAGATCGCCAC 62.899 72.222 8.95 0.00 43.17 5.01
4363 4599 4.594920 ACACCTGATACCAGATTGATAGGG 59.405 45.833 0.00 0.00 43.02 3.53
4399 4635 3.065095 CAGGTCTAGCTCGTAGGTTGTAC 59.935 52.174 0.00 0.00 0.00 2.90
4515 4756 0.031414 GGCTAGGGTTAGGTCTCCCA 60.031 60.000 3.04 0.00 45.64 4.37
4571 4813 5.504173 GCTTCTGCTTAACTTCAAACGAGTT 60.504 40.000 0.00 0.00 37.39 3.01
4708 4952 5.216622 ACACTATAGGATTACAGGCCTTGA 58.783 41.667 0.00 0.00 35.73 3.02
4810 5054 8.501580 CAAATAGGCAATCTCACACTATACATG 58.498 37.037 0.00 0.00 0.00 3.21
4860 5104 5.975410 TTTGCCAAACATTTTAGAAACCG 57.025 34.783 0.00 0.00 0.00 4.44
5064 5308 2.889045 ACAATCATATGACATGCTGGCC 59.111 45.455 7.78 0.00 0.00 5.36
5068 5312 2.974794 TCATATGACATGCTGGCCTAGT 59.025 45.455 3.32 0.00 0.00 2.57
5122 5366 1.988956 TGGCCATTGGGTCATTGCC 60.989 57.895 0.00 0.00 45.98 4.52
5311 5714 6.649557 ACTGAATAGGAAAAGACCAACTTACG 59.350 38.462 0.00 0.00 37.93 3.18
5369 5772 1.611006 TGGCATGTGCATTAACGTTGT 59.389 42.857 11.99 0.00 44.36 3.32
5386 5789 7.772332 AACGTTGTCCTTCATATCTATGTTC 57.228 36.000 0.00 0.00 35.26 3.18
5494 5897 4.707105 TCACACTGATTGAAGAAGCTCAA 58.293 39.130 0.00 0.00 39.56 3.02
5554 5957 4.465632 AATGCGACAACTGTACCTATCA 57.534 40.909 0.00 0.00 0.00 2.15
5640 6043 5.882557 GGTGATGTATGATGTTGACCTTCTT 59.117 40.000 0.00 0.00 0.00 2.52
5820 6223 5.301045 TCGGAGGGTGTATTATAGTTGTGAG 59.699 44.000 0.00 0.00 0.00 3.51
5821 6224 5.068723 CGGAGGGTGTATTATAGTTGTGAGT 59.931 44.000 0.00 0.00 0.00 3.41
5822 6225 6.406624 CGGAGGGTGTATTATAGTTGTGAGTT 60.407 42.308 0.00 0.00 0.00 3.01
5823 6226 6.761714 GGAGGGTGTATTATAGTTGTGAGTTG 59.238 42.308 0.00 0.00 0.00 3.16
5824 6227 7.253905 AGGGTGTATTATAGTTGTGAGTTGT 57.746 36.000 0.00 0.00 0.00 3.32
5825 6228 7.103641 AGGGTGTATTATAGTTGTGAGTTGTG 58.896 38.462 0.00 0.00 0.00 3.33
5826 6229 7.038587 AGGGTGTATTATAGTTGTGAGTTGTGA 60.039 37.037 0.00 0.00 0.00 3.58
5832 8034 1.949525 AGTTGTGAGTTGTGACCATGC 59.050 47.619 0.00 0.00 0.00 4.06
5846 8048 0.673437 CCATGCGGTGGTTTTGAAGT 59.327 50.000 0.00 0.00 43.44 3.01
5884 8086 5.858581 TGAGAATTGTATCTATGATGCGTCG 59.141 40.000 0.58 0.00 0.00 5.12
5913 8115 8.514330 TTGCTTCTTGGTAAAACTTTCTCTAA 57.486 30.769 0.00 0.00 0.00 2.10
5977 8179 7.449395 TGCTAGGATAAGGATCATCCATTTTTG 59.551 37.037 6.42 0.00 43.85 2.44
5978 8180 7.449704 GCTAGGATAAGGATCATCCATTTTTGT 59.550 37.037 6.42 0.00 43.85 2.83
5979 8181 7.592885 AGGATAAGGATCATCCATTTTTGTG 57.407 36.000 6.42 0.00 43.85 3.33
5991 8193 9.790344 TCATCCATTTTTGTGGTTTTATTGATT 57.210 25.926 0.00 0.00 40.27 2.57
6003 8205 9.079833 GTGGTTTTATTGATTCAAGATCACATG 57.920 33.333 5.21 0.00 0.00 3.21
6041 8243 4.079787 TGCTGCTACTATCAAAAGGGGATT 60.080 41.667 0.00 0.00 0.00 3.01
6042 8244 4.889995 GCTGCTACTATCAAAAGGGGATTT 59.110 41.667 0.00 0.00 0.00 2.17
6124 8326 3.575256 TCAAAAGCATGCACAATTCCTCT 59.425 39.130 21.98 0.00 0.00 3.69
6210 8412 1.665679 CACCAAGTATAGCCGTTGCAG 59.334 52.381 0.00 0.00 41.13 4.41
6216 8418 2.700897 AGTATAGCCGTTGCAGATCCTT 59.299 45.455 0.00 0.00 41.13 3.36
6247 8449 2.519013 GCCCAAGACTTCCACTTGAAT 58.481 47.619 0.00 0.00 44.92 2.57
6346 8981 3.118905 AGAGAGAGTGTGCCACTTTTC 57.881 47.619 8.90 9.68 45.44 2.29
6356 8991 0.310854 GCCACTTTTCCGGTGTTCAG 59.689 55.000 0.00 0.00 33.31 3.02
6388 9023 3.152341 CTGAATGGCTTCTGGTCAAACT 58.848 45.455 0.00 0.00 31.28 2.66
6392 9027 1.211703 TGGCTTCTGGTCAAACTGTCA 59.788 47.619 0.00 0.00 0.00 3.58
6402 9037 6.882140 TCTGGTCAAACTGTCAAAGAAGTTTA 59.118 34.615 0.84 0.00 43.09 2.01
6403 9038 7.065803 TCTGGTCAAACTGTCAAAGAAGTTTAG 59.934 37.037 0.84 0.00 43.09 1.85
6404 9039 6.094881 TGGTCAAACTGTCAAAGAAGTTTAGG 59.905 38.462 0.84 0.00 43.09 2.69
6405 9040 6.095021 GGTCAAACTGTCAAAGAAGTTTAGGT 59.905 38.462 0.84 0.00 43.09 3.08
6406 9041 7.362660 GGTCAAACTGTCAAAGAAGTTTAGGTT 60.363 37.037 0.84 0.00 43.09 3.50
6407 9042 7.696872 GTCAAACTGTCAAAGAAGTTTAGGTTC 59.303 37.037 0.84 0.00 43.09 3.62
6408 9043 7.610305 TCAAACTGTCAAAGAAGTTTAGGTTCT 59.390 33.333 0.84 0.00 43.09 3.01
6409 9044 7.555306 AACTGTCAAAGAAGTTTAGGTTCTC 57.445 36.000 0.00 0.00 32.75 2.87
6410 9045 6.056236 ACTGTCAAAGAAGTTTAGGTTCTCC 58.944 40.000 0.00 0.00 32.93 3.71
6411 9046 5.374071 TGTCAAAGAAGTTTAGGTTCTCCC 58.626 41.667 0.00 0.00 32.93 4.30
6412 9047 4.760715 GTCAAAGAAGTTTAGGTTCTCCCC 59.239 45.833 0.00 0.00 32.93 4.81
6413 9048 4.663592 TCAAAGAAGTTTAGGTTCTCCCCT 59.336 41.667 0.00 0.00 38.70 4.79
6414 9049 4.642466 AAGAAGTTTAGGTTCTCCCCTG 57.358 45.455 0.00 0.00 35.97 4.45
6415 9050 3.870559 AGAAGTTTAGGTTCTCCCCTGA 58.129 45.455 0.00 0.00 35.97 3.86
6416 9051 4.240323 AGAAGTTTAGGTTCTCCCCTGAA 58.760 43.478 0.00 0.00 35.97 3.02
6417 9052 4.663592 AGAAGTTTAGGTTCTCCCCTGAAA 59.336 41.667 0.00 0.00 32.50 2.69
6418 9053 5.133830 AGAAGTTTAGGTTCTCCCCTGAAAA 59.866 40.000 0.00 0.00 32.50 2.29
6419 9054 5.397553 AGTTTAGGTTCTCCCCTGAAAAA 57.602 39.130 0.00 0.00 32.50 1.94
6437 9072 3.769739 AAAATTTGAACCCCTTGGCTC 57.230 42.857 0.00 0.00 33.59 4.70
6438 9073 1.644509 AATTTGAACCCCTTGGCTCC 58.355 50.000 0.00 0.00 33.59 4.70
6439 9074 0.486879 ATTTGAACCCCTTGGCTCCA 59.513 50.000 0.00 0.00 33.59 3.86
6440 9075 0.263172 TTTGAACCCCTTGGCTCCAA 59.737 50.000 0.95 0.95 33.59 3.53
6441 9076 0.263172 TTGAACCCCTTGGCTCCAAA 59.737 50.000 2.69 0.00 35.33 3.28
6442 9077 0.486879 TGAACCCCTTGGCTCCAAAT 59.513 50.000 2.69 0.00 35.33 2.32
6443 9078 1.132881 TGAACCCCTTGGCTCCAAATT 60.133 47.619 2.69 0.00 35.33 1.82
6444 9079 1.977854 GAACCCCTTGGCTCCAAATTT 59.022 47.619 2.69 0.00 35.33 1.82
6445 9080 2.116869 ACCCCTTGGCTCCAAATTTT 57.883 45.000 2.69 0.00 35.33 1.82
6446 9081 1.977854 ACCCCTTGGCTCCAAATTTTC 59.022 47.619 2.69 0.00 35.33 2.29
6447 9082 1.977129 CCCCTTGGCTCCAAATTTTCA 59.023 47.619 2.69 0.00 35.33 2.69
6448 9083 2.371510 CCCCTTGGCTCCAAATTTTCAA 59.628 45.455 2.69 0.00 35.33 2.69
6449 9084 3.181446 CCCCTTGGCTCCAAATTTTCAAA 60.181 43.478 2.69 0.00 35.33 2.69
6450 9085 4.067192 CCCTTGGCTCCAAATTTTCAAAG 58.933 43.478 2.69 0.00 35.33 2.77
6451 9086 3.499537 CCTTGGCTCCAAATTTTCAAAGC 59.500 43.478 2.69 0.00 35.33 3.51
6452 9087 4.383173 CTTGGCTCCAAATTTTCAAAGCT 58.617 39.130 2.69 0.00 35.33 3.74
6453 9088 3.731089 TGGCTCCAAATTTTCAAAGCTG 58.269 40.909 0.00 0.00 0.00 4.24
6454 9089 3.134442 TGGCTCCAAATTTTCAAAGCTGT 59.866 39.130 0.00 0.00 0.00 4.40
6455 9090 4.343526 TGGCTCCAAATTTTCAAAGCTGTA 59.656 37.500 0.00 0.00 0.00 2.74
6456 9091 5.163364 TGGCTCCAAATTTTCAAAGCTGTAA 60.163 36.000 0.00 0.00 0.00 2.41
6457 9092 5.177511 GGCTCCAAATTTTCAAAGCTGTAAC 59.822 40.000 0.00 0.00 0.00 2.50
6458 9093 5.752955 GCTCCAAATTTTCAAAGCTGTAACA 59.247 36.000 0.00 0.00 0.00 2.41
6459 9094 6.074142 GCTCCAAATTTTCAAAGCTGTAACAG 60.074 38.462 0.00 0.00 34.12 3.16
6460 9095 7.106439 TCCAAATTTTCAAAGCTGTAACAGA 57.894 32.000 0.00 0.00 32.44 3.41
6461 9096 7.202526 TCCAAATTTTCAAAGCTGTAACAGAG 58.797 34.615 0.00 0.00 32.44 3.35
6462 9097 7.068103 TCCAAATTTTCAAAGCTGTAACAGAGA 59.932 33.333 0.00 0.00 32.44 3.10
6463 9098 7.380602 CCAAATTTTCAAAGCTGTAACAGAGAG 59.619 37.037 0.00 0.00 32.44 3.20
6464 9099 7.573968 AATTTTCAAAGCTGTAACAGAGAGT 57.426 32.000 0.00 0.00 32.44 3.24
6465 9100 5.991328 TTTCAAAGCTGTAACAGAGAGTG 57.009 39.130 0.00 0.00 32.44 3.51
6466 9101 4.672587 TCAAAGCTGTAACAGAGAGTGT 57.327 40.909 0.00 0.00 43.24 3.55
6467 9102 4.371786 TCAAAGCTGTAACAGAGAGTGTG 58.628 43.478 0.00 0.00 40.26 3.82
6468 9103 2.447244 AGCTGTAACAGAGAGTGTGC 57.553 50.000 0.00 0.00 40.26 4.57
6469 9104 1.001406 AGCTGTAACAGAGAGTGTGCC 59.999 52.381 0.00 0.00 40.26 5.01
6470 9105 1.270305 GCTGTAACAGAGAGTGTGCCA 60.270 52.381 0.00 0.00 40.26 4.92
6471 9106 2.408050 CTGTAACAGAGAGTGTGCCAC 58.592 52.381 0.00 0.00 40.26 5.01
6472 9107 2.036475 CTGTAACAGAGAGTGTGCCACT 59.964 50.000 7.46 7.46 40.26 4.00
6473 9108 2.434336 TGTAACAGAGAGTGTGCCACTT 59.566 45.455 8.90 1.09 45.44 3.16
6474 9109 2.717639 AACAGAGAGTGTGCCACTTT 57.282 45.000 8.90 4.08 45.44 2.66
6475 9110 2.717639 ACAGAGAGTGTGCCACTTTT 57.282 45.000 8.90 2.28 45.44 2.27
6476 9111 2.292267 ACAGAGAGTGTGCCACTTTTG 58.708 47.619 8.90 9.74 45.44 2.44
6477 9112 1.002033 CAGAGAGTGTGCCACTTTTGC 60.002 52.381 8.90 0.00 45.44 3.68
6478 9113 0.040958 GAGAGTGTGCCACTTTTGCG 60.041 55.000 8.90 0.00 45.44 4.85
6479 9114 1.008538 GAGTGTGCCACTTTTGCGG 60.009 57.895 8.90 0.00 45.44 5.69
6480 9115 1.724582 GAGTGTGCCACTTTTGCGGT 61.725 55.000 8.90 0.00 45.44 5.68
6481 9116 1.588667 GTGTGCCACTTTTGCGGTG 60.589 57.895 0.00 0.00 34.78 4.94
6482 9117 2.049185 TGTGCCACTTTTGCGGTGT 61.049 52.632 0.00 0.00 33.31 4.16
6483 9118 1.140804 GTGCCACTTTTGCGGTGTT 59.859 52.632 0.00 0.00 33.31 3.32
6484 9119 0.869880 GTGCCACTTTTGCGGTGTTC 60.870 55.000 0.00 0.00 33.31 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 34 7.780064 TGTTCAATCTTTGACAATTTCTTCCA 58.220 30.769 0.00 0.00 39.87 3.53
143 147 4.491554 TCGCGTGTTTGAAAATTTGTTG 57.508 36.364 5.77 0.00 0.00 3.33
256 263 9.736023 ACTGTACACAAATTTCAAGAAAGATTC 57.264 29.630 0.00 0.00 33.32 2.52
264 271 8.459521 TCACAAAACTGTACACAAATTTCAAG 57.540 30.769 0.00 0.00 0.00 3.02
294 302 7.782049 TCCTTTCCTTTTCCTTTCTCTTTTTC 58.218 34.615 0.00 0.00 0.00 2.29
649 673 0.178987 GATGGACTCCTCGAGGGCTA 60.179 60.000 30.80 18.15 33.35 3.93
671 717 1.591504 CGGGTTGTTTCGATTGGGGG 61.592 60.000 0.00 0.00 0.00 5.40
781 827 0.474660 AGGGGATATGTGGAGGAGGC 60.475 60.000 0.00 0.00 0.00 4.70
793 839 1.431243 ACCAACCAAGCAAAGGGGATA 59.569 47.619 0.00 0.00 0.00 2.59
863 909 4.222847 GACTAAGGAGGGCGGCGG 62.223 72.222 9.78 0.00 0.00 6.13
909 955 0.457851 AGATGGAGAAGAAGCGACGG 59.542 55.000 0.00 0.00 0.00 4.79
1109 1155 5.013287 GGGAAGAGGAGGGGAGAAATAATAC 59.987 48.000 0.00 0.00 0.00 1.89
1113 1159 2.361504 GGGGAAGAGGAGGGGAGAAATA 60.362 54.545 0.00 0.00 0.00 1.40
1164 1210 2.500229 GACTGGTCCCATTCGAAAACA 58.500 47.619 0.00 0.00 0.00 2.83
1325 1371 4.226168 GGAATTGGAAGGGAGAGAGAGAAA 59.774 45.833 0.00 0.00 0.00 2.52
1326 1372 3.777522 GGAATTGGAAGGGAGAGAGAGAA 59.222 47.826 0.00 0.00 0.00 2.87
1327 1373 3.246130 TGGAATTGGAAGGGAGAGAGAGA 60.246 47.826 0.00 0.00 0.00 3.10
1328 1374 3.110705 TGGAATTGGAAGGGAGAGAGAG 58.889 50.000 0.00 0.00 0.00 3.20
1329 1375 3.205519 TGGAATTGGAAGGGAGAGAGA 57.794 47.619 0.00 0.00 0.00 3.10
1330 1376 4.516652 AATGGAATTGGAAGGGAGAGAG 57.483 45.455 0.00 0.00 33.44 3.20
1348 1418 1.706301 CACGAGCTCGAGTGCAATG 59.294 57.895 40.58 22.91 43.02 2.82
1414 1484 2.432146 TGCTGCAAAACAACCCACATAA 59.568 40.909 0.00 0.00 0.00 1.90
1518 1588 0.251077 AAAACTCTGCAGCTGGGAGG 60.251 55.000 17.12 4.18 35.32 4.30
1550 1620 5.692115 TCTGCACTAACCCAATCAGATAA 57.308 39.130 0.00 0.00 0.00 1.75
1557 1627 5.700402 ATCTAGTTCTGCACTAACCCAAT 57.300 39.130 4.02 0.00 37.54 3.16
1623 1693 6.992063 AAAACTCGTAGATGATTTCTGCAT 57.008 33.333 0.00 0.00 36.93 3.96
1651 1721 4.570369 GCAGAGTGAAGAAGAGCTAAATCC 59.430 45.833 0.00 0.00 0.00 3.01
1754 1824 8.623903 CATATGGTGCACTGAATAAATGTAGTT 58.376 33.333 17.98 0.00 0.00 2.24
1891 1961 7.663664 CGCTAATGACGTAATGGTTGATATAC 58.336 38.462 0.00 0.00 0.00 1.47
2193 2263 2.932184 TAGACATACAGGGACCCACA 57.068 50.000 14.60 0.00 0.00 4.17
2414 2486 5.913137 TTCCAAACCCTACAATTGCTATG 57.087 39.130 5.05 0.00 0.00 2.23
2596 2712 2.039951 ACCTAACCCTAGCCGCCA 59.960 61.111 0.00 0.00 0.00 5.69
2622 2739 2.586792 CTCGGCTTCCTGAAGGGG 59.413 66.667 8.85 0.00 38.80 4.79
2697 2815 5.770162 GCTTAGCCCAGTTATCATATTTGGT 59.230 40.000 0.00 0.00 0.00 3.67
2727 2845 6.388278 CCTAGCCCAGTTATCTTATCGTTAC 58.612 44.000 0.00 0.00 0.00 2.50
2962 3083 1.934220 CTGCCCGCGACTCTTCTACA 61.934 60.000 8.23 0.00 0.00 2.74
3040 3161 3.072468 CCCCGGCCGAGTAACTCA 61.072 66.667 30.73 0.00 0.00 3.41
3375 3553 0.107831 CCTTCCGTTCCTCACCACAA 59.892 55.000 0.00 0.00 0.00 3.33
3496 3677 1.968493 ACATGGTATTACGCCCTCGAT 59.032 47.619 0.00 0.00 39.41 3.59
3525 3706 2.796557 CCTCCTATCATCTACGAGGCA 58.203 52.381 0.00 0.00 34.14 4.75
3676 3858 4.175337 CCCATCGTCCACGCCCAT 62.175 66.667 0.00 0.00 39.60 4.00
3772 3954 3.717294 GATGGTGTGGACGGGCCT 61.717 66.667 0.84 0.00 37.63 5.19
3808 3990 3.691342 CAGTTCGGCGGGTCCTCA 61.691 66.667 7.21 0.00 0.00 3.86
4030 4257 2.839098 CCACCACCAGCAACCTCT 59.161 61.111 0.00 0.00 0.00 3.69
4399 4635 4.740822 CAAGCCCCCTTCCACCCG 62.741 72.222 0.00 0.00 0.00 5.28
4708 4952 5.837829 ACCACCAATAGTTTCCCATACAAT 58.162 37.500 0.00 0.00 0.00 2.71
4825 5069 5.771469 TGTTTGGCAAAATGACTGATACTG 58.229 37.500 15.29 0.00 0.00 2.74
4834 5078 7.254590 CGGTTTCTAAAATGTTTGGCAAAATGA 60.255 33.333 15.29 2.06 0.00 2.57
4860 5104 5.594317 AGTGGGCAATAAATCATAGGTGTTC 59.406 40.000 0.00 0.00 0.00 3.18
5047 5291 2.974794 ACTAGGCCAGCATGTCATATGA 59.025 45.455 5.01 0.00 0.00 2.15
5064 5308 6.987992 TGGATAAAGCACCGGTATAAAACTAG 59.012 38.462 6.87 0.00 0.00 2.57
5068 5312 6.358178 TGATGGATAAAGCACCGGTATAAAA 58.642 36.000 6.87 0.00 0.00 1.52
5118 5362 6.541641 ACAAAGTTGCAAAAGATTTATGGCAA 59.458 30.769 0.00 0.00 38.75 4.52
5122 5366 7.712264 TGGACAAAGTTGCAAAAGATTTATG 57.288 32.000 0.00 0.00 0.00 1.90
5311 5714 4.503734 CACACACAACATCCATTCACAAAC 59.496 41.667 0.00 0.00 0.00 2.93
5369 5772 8.090831 GCATACACAGAACATAGATATGAAGGA 58.909 37.037 6.84 0.00 37.15 3.36
5386 5789 2.092753 ACCCTGGATTCTGCATACACAG 60.093 50.000 0.00 0.00 39.12 3.66
5640 6043 1.750018 CACCTTGGCATGATCGGCA 60.750 57.895 10.82 2.39 40.11 5.69
5804 6207 7.672240 TGGTCACAACTCACAACTATAATACA 58.328 34.615 0.00 0.00 0.00 2.29
5846 8048 3.921119 ATTCTCACGCTGCATTTGAAA 57.079 38.095 0.00 0.00 0.00 2.69
5884 8086 5.515797 AAGTTTTACCAAGAAGCAAGACC 57.484 39.130 0.00 0.00 0.00 3.85
5921 8123 9.772973 ACATAATCAATCCAATGAAATCAATGG 57.227 29.630 10.65 10.65 45.90 3.16
5977 8179 9.079833 CATGTGATCTTGAATCAATAAAACCAC 57.920 33.333 0.00 1.08 0.00 4.16
5978 8180 8.252417 CCATGTGATCTTGAATCAATAAAACCA 58.748 33.333 0.00 0.00 0.00 3.67
5979 8181 8.469200 TCCATGTGATCTTGAATCAATAAAACC 58.531 33.333 0.00 0.00 0.00 3.27
5991 8193 4.346127 CCTATGGACTCCATGTGATCTTGA 59.654 45.833 19.49 0.00 44.84 3.02
6003 8205 2.370189 AGCAGCAATACCTATGGACTCC 59.630 50.000 0.00 0.00 0.00 3.85
6041 8243 8.400184 AGAAAGAATCTCATCACAACATTCAA 57.600 30.769 0.00 0.00 30.46 2.69
6042 8244 7.991084 AGAAAGAATCTCATCACAACATTCA 57.009 32.000 0.00 0.00 30.46 2.57
6124 8326 7.441157 CGAAGCATGGAAGTTGGATAAATAGTA 59.559 37.037 0.00 0.00 0.00 1.82
6247 8449 3.255642 GGTTTGCTAGATGAGTTGGCAAA 59.744 43.478 0.00 7.21 46.12 3.68
6346 8981 0.951040 GGTTCTGAGCTGAACACCGG 60.951 60.000 16.28 0.00 45.74 5.28
6388 9023 5.374071 GGGAGAACCTAAACTTCTTTGACA 58.626 41.667 0.00 0.00 35.85 3.58
6392 9027 4.663592 TCAGGGGAGAACCTAAACTTCTTT 59.336 41.667 0.00 0.00 39.34 2.52
6416 9051 3.181445 GGAGCCAAGGGGTTCAAATTTTT 60.181 43.478 0.11 0.00 45.54 1.94
6417 9052 2.371841 GGAGCCAAGGGGTTCAAATTTT 59.628 45.455 0.11 0.00 45.54 1.82
6418 9053 1.977854 GGAGCCAAGGGGTTCAAATTT 59.022 47.619 0.11 0.00 45.54 1.82
6419 9054 1.132881 TGGAGCCAAGGGGTTCAAATT 60.133 47.619 0.00 0.00 45.54 1.82
6420 9055 0.486879 TGGAGCCAAGGGGTTCAAAT 59.513 50.000 0.00 0.00 45.54 2.32
6421 9056 0.263172 TTGGAGCCAAGGGGTTCAAA 59.737 50.000 5.73 0.00 44.52 2.69
6422 9057 0.263172 TTTGGAGCCAAGGGGTTCAA 59.737 50.000 4.11 4.11 45.62 2.69
6423 9058 0.486879 ATTTGGAGCCAAGGGGTTCA 59.513 50.000 1.79 0.00 45.54 3.18
6424 9059 1.644509 AATTTGGAGCCAAGGGGTTC 58.355 50.000 1.79 0.00 43.21 3.62
6425 9060 2.116869 AAATTTGGAGCCAAGGGGTT 57.883 45.000 1.79 0.00 37.24 4.11
6426 9061 1.977854 GAAAATTTGGAGCCAAGGGGT 59.022 47.619 1.79 0.00 37.24 4.95
6427 9062 1.977129 TGAAAATTTGGAGCCAAGGGG 59.023 47.619 1.79 0.00 37.24 4.79
6428 9063 3.767902 TTGAAAATTTGGAGCCAAGGG 57.232 42.857 1.79 0.00 37.24 3.95
6429 9064 3.499537 GCTTTGAAAATTTGGAGCCAAGG 59.500 43.478 1.79 0.00 37.24 3.61
6430 9065 4.212636 CAGCTTTGAAAATTTGGAGCCAAG 59.787 41.667 1.79 2.73 37.24 3.61
6431 9066 4.128643 CAGCTTTGAAAATTTGGAGCCAA 58.871 39.130 0.00 0.00 0.00 4.52
6432 9067 3.134442 ACAGCTTTGAAAATTTGGAGCCA 59.866 39.130 10.09 0.00 0.00 4.75
6433 9068 3.732212 ACAGCTTTGAAAATTTGGAGCC 58.268 40.909 10.09 0.00 0.00 4.70
6434 9069 5.752955 TGTTACAGCTTTGAAAATTTGGAGC 59.247 36.000 0.00 0.00 0.00 4.70
6435 9070 7.202526 TCTGTTACAGCTTTGAAAATTTGGAG 58.797 34.615 7.61 0.00 0.00 3.86
6436 9071 7.068103 TCTCTGTTACAGCTTTGAAAATTTGGA 59.932 33.333 7.61 0.00 0.00 3.53
6437 9072 7.202526 TCTCTGTTACAGCTTTGAAAATTTGG 58.797 34.615 7.61 0.00 0.00 3.28
6438 9073 7.917505 ACTCTCTGTTACAGCTTTGAAAATTTG 59.082 33.333 7.61 0.00 0.00 2.32
6439 9074 7.917505 CACTCTCTGTTACAGCTTTGAAAATTT 59.082 33.333 7.61 0.00 0.00 1.82
6440 9075 7.067494 ACACTCTCTGTTACAGCTTTGAAAATT 59.933 33.333 7.61 0.00 0.00 1.82
6441 9076 6.543831 ACACTCTCTGTTACAGCTTTGAAAAT 59.456 34.615 7.61 0.00 0.00 1.82
6442 9077 5.880332 ACACTCTCTGTTACAGCTTTGAAAA 59.120 36.000 7.61 0.00 0.00 2.29
6443 9078 5.294306 CACACTCTCTGTTACAGCTTTGAAA 59.706 40.000 7.61 0.00 0.00 2.69
6444 9079 4.811024 CACACTCTCTGTTACAGCTTTGAA 59.189 41.667 7.61 0.00 0.00 2.69
6445 9080 4.371786 CACACTCTCTGTTACAGCTTTGA 58.628 43.478 7.61 2.82 0.00 2.69
6446 9081 3.059325 GCACACTCTCTGTTACAGCTTTG 60.059 47.826 7.61 4.76 0.00 2.77
6447 9082 3.134458 GCACACTCTCTGTTACAGCTTT 58.866 45.455 7.61 0.00 0.00 3.51
6448 9083 2.548920 GGCACACTCTCTGTTACAGCTT 60.549 50.000 7.61 0.00 0.00 3.74
6449 9084 1.001406 GGCACACTCTCTGTTACAGCT 59.999 52.381 7.61 0.00 0.00 4.24
6450 9085 1.270305 TGGCACACTCTCTGTTACAGC 60.270 52.381 7.61 0.00 0.00 4.40
6451 9086 2.820059 TGGCACACTCTCTGTTACAG 57.180 50.000 5.94 5.94 0.00 2.74
6464 9099 1.599606 AACACCGCAAAAGTGGCACA 61.600 50.000 21.41 0.00 39.63 4.57
6465 9100 0.869880 GAACACCGCAAAAGTGGCAC 60.870 55.000 10.29 10.29 39.63 5.01
6466 9101 1.435515 GAACACCGCAAAAGTGGCA 59.564 52.632 0.00 0.00 39.63 4.92
6467 9102 4.319249 GAACACCGCAAAAGTGGC 57.681 55.556 0.00 0.00 39.63 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.