Multiple sequence alignment - TraesCS2B01G296400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G296400 chr2B 100.000 3411 0 0 1 3411 413454339 413450929 0.000000e+00 6300.0
1 TraesCS2B01G296400 chr2B 100.000 2271 0 0 3741 6011 413450599 413448329 0.000000e+00 4194.0
2 TraesCS2B01G296400 chr2B 88.710 62 5 2 3762 3822 68226793 68226853 2.320000e-09 75.0
3 TraesCS2B01G296400 chr2D 96.670 1802 39 10 850 2640 348197343 348195552 0.000000e+00 2976.0
4 TraesCS2B01G296400 chr2D 93.622 1709 57 16 4337 6011 348194075 348192385 0.000000e+00 2505.0
5 TraesCS2B01G296400 chr2D 97.782 586 12 1 3755 4339 348194697 348194112 0.000000e+00 1009.0
6 TraesCS2B01G296400 chr2D 96.970 495 12 2 2919 3410 348195554 348195060 0.000000e+00 828.0
7 TraesCS2B01G296400 chr2D 95.053 283 12 2 2638 2919 365997377 365997658 1.540000e-120 444.0
8 TraesCS2B01G296400 chr2D 94.545 55 2 1 3759 3812 543181650 543181704 3.860000e-12 84.2
9 TraesCS2B01G296400 chr2D 96.078 51 2 0 3759 3809 566557860 566557910 3.860000e-12 84.2
10 TraesCS2B01G296400 chr2A 94.789 1804 39 14 847 2640 461696522 461698280 0.000000e+00 2760.0
11 TraesCS2B01G296400 chr2A 92.163 1378 60 12 4642 5995 461699684 461701037 0.000000e+00 1903.0
12 TraesCS2B01G296400 chr2A 97.207 537 13 2 3804 4339 461698895 461699430 0.000000e+00 907.0
13 TraesCS2B01G296400 chr2A 96.177 497 15 3 2919 3411 461698278 461698774 0.000000e+00 809.0
14 TraesCS2B01G296400 chr2A 97.561 123 3 0 4217 4339 461699512 461699634 1.700000e-50 211.0
15 TraesCS2B01G296400 chr2A 93.333 45 3 0 4337 4381 461699467 461699511 3.890000e-07 67.6
16 TraesCS2B01G296400 chr7D 87.544 859 68 18 1 845 273960150 273959317 0.000000e+00 957.0
17 TraesCS2B01G296400 chr7D 93.772 289 16 2 2638 2925 549143842 549143555 3.330000e-117 433.0
18 TraesCS2B01G296400 chr3B 87.294 850 65 18 1 837 602465892 602466711 0.000000e+00 931.0
19 TraesCS2B01G296400 chr3B 91.892 148 11 1 699 845 602466714 602466861 7.900000e-49 206.0
20 TraesCS2B01G296400 chr3B 88.710 124 13 1 5344 5467 404830440 404830318 3.750000e-32 150.0
21 TraesCS2B01G296400 chr3B 87.903 124 14 1 5346 5469 245935492 245935614 1.750000e-30 145.0
22 TraesCS2B01G296400 chr3B 79.518 166 27 5 5472 5630 26256475 26256310 1.770000e-20 111.0
23 TraesCS2B01G296400 chr3B 78.916 166 28 5 5472 5630 26067175 26067010 8.240000e-19 106.0
24 TraesCS2B01G296400 chr3B 79.141 163 27 5 5475 5630 26409569 26409407 8.240000e-19 106.0
25 TraesCS2B01G296400 chr3B 91.045 67 4 2 3762 3827 727790727 727790662 8.300000e-14 89.8
26 TraesCS2B01G296400 chr3B 94.118 51 3 0 3762 3812 156646793 156646743 1.800000e-10 78.7
27 TraesCS2B01G296400 chr5B 86.612 859 79 19 1 845 299634333 299633497 0.000000e+00 917.0
28 TraesCS2B01G296400 chr5B 79.878 164 24 7 5472 5627 125795037 125794875 1.770000e-20 111.0
29 TraesCS2B01G296400 chr1B 85.448 859 93 16 1 847 450223928 450223090 0.000000e+00 865.0
30 TraesCS2B01G296400 chr6B 93.289 298 18 2 2638 2934 172739798 172739502 7.150000e-119 438.0
31 TraesCS2B01G296400 chr6B 86.154 130 16 2 5347 5476 617176702 617176575 8.120000e-29 139.0
32 TraesCS2B01G296400 chr6B 92.982 57 2 2 3768 3822 437482981 437482925 1.390000e-11 82.4
33 TraesCS2B01G296400 chr4D 94.118 289 15 2 2638 2925 436237885 436237598 7.150000e-119 438.0
34 TraesCS2B01G296400 chr4D 94.326 282 14 2 2638 2919 430739455 430739734 1.200000e-116 431.0
35 TraesCS2B01G296400 chr5D 94.346 283 14 2 2638 2919 355939308 355939589 3.330000e-117 433.0
36 TraesCS2B01G296400 chr5D 87.692 130 11 4 5346 5472 233044471 233044598 4.850000e-31 147.0
37 TraesCS2B01G296400 chr1D 94.346 283 14 2 2638 2919 356186057 356186338 3.330000e-117 433.0
38 TraesCS2B01G296400 chr1D 93.772 289 15 3 2638 2925 410874106 410873820 1.200000e-116 431.0
39 TraesCS2B01G296400 chr1A 93.772 289 16 2 2638 2925 73016941 73016654 3.330000e-117 433.0
40 TraesCS2B01G296400 chr3A 84.742 426 46 8 132 547 95898661 95898245 5.610000e-110 409.0
41 TraesCS2B01G296400 chr7A 80.507 513 50 19 1 499 125149121 125148645 1.240000e-91 348.0
42 TraesCS2B01G296400 chr7A 82.039 412 43 11 464 847 125148646 125148238 7.520000e-84 322.0
43 TraesCS2B01G296400 chrUn 81.818 407 47 7 464 843 50610070 50610476 3.500000e-82 316.0
44 TraesCS2B01G296400 chr3D 88.710 124 13 1 5344 5467 315480456 315480578 3.750000e-32 150.0
45 TraesCS2B01G296400 chr3D 76.023 171 32 5 5472 5635 299539277 299539445 4.990000e-11 80.5
46 TraesCS2B01G296400 chr3D 94.118 51 3 0 3762 3812 105124480 105124430 1.800000e-10 78.7
47 TraesCS2B01G296400 chr7B 88.618 123 13 1 5346 5468 464539681 464539560 1.350000e-31 148.0
48 TraesCS2B01G296400 chr7B 81.679 131 18 5 724 851 210867676 210867803 2.960000e-18 104.0
49 TraesCS2B01G296400 chr6D 86.154 130 16 2 5347 5476 410398399 410398272 8.120000e-29 139.0
50 TraesCS2B01G296400 chr6D 81.699 153 15 7 5472 5613 403063267 403063117 1.370000e-21 115.0
51 TraesCS2B01G296400 chr4A 84.000 125 16 4 723 845 214475141 214475263 3.810000e-22 117.0
52 TraesCS2B01G296400 chr4A 79.878 164 24 7 5472 5627 63749977 63750139 1.770000e-20 111.0
53 TraesCS2B01G296400 chr5A 79.268 164 25 7 5472 5627 368099343 368099505 8.240000e-19 106.0
54 TraesCS2B01G296400 chr5A 98.182 55 1 0 3759 3813 651563522 651563576 4.960000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G296400 chr2B 413448329 413454339 6010 True 5247.0 6300 100.000 1 6011 2 chr2B.!!$R1 6010
1 TraesCS2B01G296400 chr2D 348192385 348197343 4958 True 1829.5 2976 96.261 850 6011 4 chr2D.!!$R1 5161
2 TraesCS2B01G296400 chr2A 461696522 461701037 4515 False 1109.6 2760 95.205 847 5995 6 chr2A.!!$F1 5148
3 TraesCS2B01G296400 chr7D 273959317 273960150 833 True 957.0 957 87.544 1 845 1 chr7D.!!$R1 844
4 TraesCS2B01G296400 chr3B 602465892 602466861 969 False 568.5 931 89.593 1 845 2 chr3B.!!$F2 844
5 TraesCS2B01G296400 chr5B 299633497 299634333 836 True 917.0 917 86.612 1 845 1 chr5B.!!$R2 844
6 TraesCS2B01G296400 chr1B 450223090 450223928 838 True 865.0 865 85.448 1 847 1 chr1B.!!$R1 846
7 TraesCS2B01G296400 chr7A 125148238 125149121 883 True 335.0 348 81.273 1 847 2 chr7A.!!$R1 846


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
716 800 0.038618 ATGTAGCGTGAACAGTGCGA 60.039 50.0 0.00 0.00 0.00 5.10 F
1485 1722 0.109132 CGGTGGAATGCTTTTCCTGC 60.109 55.0 16.65 10.91 39.31 4.85 F
2881 3120 0.036010 CCTAAGGTGAGGTGTGGCAG 60.036 60.0 0.00 0.00 0.00 4.85 F
2919 3158 0.031616 TGGAAACCAAACAGCCCCTT 60.032 50.0 0.00 0.00 0.00 3.95 F
4339 4601 0.813610 TTGCAGAGACACACCGTTGG 60.814 55.0 0.00 0.00 0.00 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2695 2934 0.663153 AACTCAAGTTCGGCAAGTGC 59.337 50.000 0.00 0.0 35.06 4.40 R
2900 3139 0.031616 AAGGGGCTGTTTGGTTTCCA 60.032 50.000 0.00 0.0 0.00 3.53 R
4789 5112 1.597027 GTGCAGTACCAGCAACCGT 60.597 57.895 11.67 0.0 44.64 4.83 R
4837 5160 2.478539 GCTCTTTCCAATCACGCCATTC 60.479 50.000 0.00 0.0 0.00 2.67 R
5834 6190 0.105593 GCTGCTTGATCCATCCGAGA 59.894 55.000 0.00 0.0 0.00 4.04 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 0.737219 AGAATTGGAGCGCTTGCATC 59.263 50.000 13.26 7.22 42.66 3.91
101 108 2.046892 GCCTTCGCAGCCTTCTGA 60.047 61.111 0.00 0.00 42.95 3.27
124 131 3.133946 GAGATCGTGCTCCCTCCC 58.866 66.667 0.00 0.00 0.00 4.30
125 132 1.456705 GAGATCGTGCTCCCTCCCT 60.457 63.158 0.00 0.00 0.00 4.20
126 133 1.456705 AGATCGTGCTCCCTCCCTC 60.457 63.158 0.00 0.00 0.00 4.30
149 156 4.792804 GTCTCCCTGGCAGCCTGC 62.793 72.222 14.15 8.55 44.08 4.85
177 184 4.147322 GGGCGCGTTCATCACACG 62.147 66.667 8.43 0.00 40.75 4.49
179 186 2.089936 GGCGCGTTCATCACACGTA 61.090 57.895 8.43 0.00 39.92 3.57
180 187 1.340465 GCGCGTTCATCACACGTAG 59.660 57.895 8.43 0.00 39.92 3.51
181 188 1.068832 GCGCGTTCATCACACGTAGA 61.069 55.000 8.43 0.00 39.92 2.59
205 216 4.463050 AAGAGGAAGGTATCGAGGAGAT 57.537 45.455 0.00 0.00 43.19 2.75
207 218 2.823154 GAGGAAGGTATCGAGGAGATGG 59.177 54.545 0.00 0.00 40.40 3.51
225 236 4.175337 ATATGCCACTGCCGCCGT 62.175 61.111 0.00 0.00 36.33 5.68
226 237 4.830765 TATGCCACTGCCGCCGTC 62.831 66.667 0.00 0.00 36.33 4.79
243 254 1.629043 GTCACCACTCACCACCTAGA 58.371 55.000 0.00 0.00 0.00 2.43
261 272 2.937519 AGACAGATGCGATGTAGGAGA 58.062 47.619 0.00 0.00 0.00 3.71
279 290 1.202818 AGAAAGGACTGCCAGAACCAC 60.203 52.381 0.00 0.00 36.29 4.16
443 464 2.294074 TGATAACGGGCCTGCAATTAC 58.706 47.619 12.89 0.00 0.00 1.89
453 474 3.004752 CCTGCAATTACTGGCTAAGGT 57.995 47.619 0.00 0.00 0.00 3.50
456 477 3.609853 TGCAATTACTGGCTAAGGTGAG 58.390 45.455 0.00 0.00 0.00 3.51
514 568 1.379527 CGGCTAGTGGAATCCAAACC 58.620 55.000 2.31 2.21 34.18 3.27
523 577 2.905085 TGGAATCCAAACCACATGCAAT 59.095 40.909 0.00 0.00 0.00 3.56
588 672 3.207547 CTCCGTGGAGCGTGTGACA 62.208 63.158 2.38 0.00 39.32 3.58
600 684 2.918131 GCGTGTGACAGATGCCTTTTTC 60.918 50.000 5.49 0.00 0.00 2.29
641 725 3.706373 GGCTGACTCGAGGCCCAA 61.706 66.667 17.58 0.00 39.96 4.12
716 800 0.038618 ATGTAGCGTGAACAGTGCGA 60.039 50.000 0.00 0.00 0.00 5.10
743 969 2.988688 GCCCAGGCGCGAATGAAAA 61.989 57.895 12.10 0.00 0.00 2.29
837 1064 4.155280 GGAATAGTGCACGGTTGTAATGTT 59.845 41.667 12.01 0.00 0.00 2.71
902 1130 2.814336 GAGCCCATCAACCGGATATTTC 59.186 50.000 9.46 0.00 33.95 2.17
903 1131 1.535462 GCCCATCAACCGGATATTTCG 59.465 52.381 9.46 0.00 33.95 3.46
1169 1397 0.969894 CTCCGTTGGAGTCAGGAACT 59.030 55.000 4.65 0.00 44.25 3.01
1386 1623 2.465210 GCATCAGATTCGTTGCCTTC 57.535 50.000 0.00 0.00 0.00 3.46
1485 1722 0.109132 CGGTGGAATGCTTTTCCTGC 60.109 55.000 16.65 10.91 39.31 4.85
1519 1756 5.126061 ACCATTTGAGATACTGGAAATGCAC 59.874 40.000 0.00 0.00 35.41 4.57
1554 1791 8.634444 CATTGAATTACGGGGATTATGGTTTTA 58.366 33.333 0.00 0.00 0.00 1.52
1563 1800 8.544622 ACGGGGATTATGGTTTTAATGAATTTT 58.455 29.630 0.00 0.00 0.00 1.82
1565 1802 9.337396 GGGGATTATGGTTTTAATGAATTTTCC 57.663 33.333 0.00 0.00 0.00 3.13
1603 1840 4.141869 GGAAATTTGAATATGGTGCCTGCT 60.142 41.667 0.00 0.00 0.00 4.24
1670 1907 9.181061 GCCCTAACCATAGTAAAAACTCAAATA 57.819 33.333 0.00 0.00 0.00 1.40
1687 1924 6.159751 ACTCAAATATACCCAAGGCCTTCTTA 59.840 38.462 17.29 7.37 33.68 2.10
1700 1937 4.068599 GGCCTTCTTATATCAAGGAGTGC 58.931 47.826 12.49 7.90 41.74 4.40
1895 2133 5.049198 GCAGCTATAATCTTGCAGCACATTA 60.049 40.000 0.00 1.24 37.87 1.90
1989 2227 7.468084 GCTTAATATCGCTGGGAATTGTGTAAA 60.468 37.037 0.00 0.00 0.00 2.01
2052 2290 7.420214 CCCTATATGTGTTCTGGGAATAGTGTT 60.420 40.741 0.00 0.00 36.90 3.32
2121 2360 9.314321 ACTTACTTTAAGTCATCGAATATGGTG 57.686 33.333 0.00 0.00 45.38 4.17
2291 2530 3.438781 TGCACAGTTTCGTGACTTCTTTT 59.561 39.130 0.00 0.00 39.34 2.27
2292 2531 4.029043 GCACAGTTTCGTGACTTCTTTTC 58.971 43.478 0.00 0.00 39.34 2.29
2293 2532 4.201822 GCACAGTTTCGTGACTTCTTTTCT 60.202 41.667 0.00 0.00 39.34 2.52
2294 2533 5.673818 GCACAGTTTCGTGACTTCTTTTCTT 60.674 40.000 0.00 0.00 39.34 2.52
2295 2534 6.314784 CACAGTTTCGTGACTTCTTTTCTTT 58.685 36.000 0.00 0.00 39.34 2.52
2308 2547 9.723447 GACTTCTTTTCTTTTTCTCTACTTTGG 57.277 33.333 0.00 0.00 0.00 3.28
2337 2576 7.962373 TGTTAGTTTGCTCATGTGAATTAATCG 59.038 33.333 0.00 0.00 0.00 3.34
2338 2577 6.500684 AGTTTGCTCATGTGAATTAATCGT 57.499 33.333 0.00 0.00 0.00 3.73
2641 2880 8.752005 TTCCTCATTGTTCTTATGGATTTAGG 57.248 34.615 0.00 0.00 0.00 2.69
2642 2881 7.290061 TCCTCATTGTTCTTATGGATTTAGGG 58.710 38.462 0.00 0.00 0.00 3.53
2643 2882 6.491403 CCTCATTGTTCTTATGGATTTAGGGG 59.509 42.308 0.00 0.00 0.00 4.79
2644 2883 5.833131 TCATTGTTCTTATGGATTTAGGGGC 59.167 40.000 0.00 0.00 0.00 5.80
2645 2884 5.466127 TTGTTCTTATGGATTTAGGGGCT 57.534 39.130 0.00 0.00 0.00 5.19
2646 2885 4.792068 TGTTCTTATGGATTTAGGGGCTG 58.208 43.478 0.00 0.00 0.00 4.85
2647 2886 4.229582 TGTTCTTATGGATTTAGGGGCTGT 59.770 41.667 0.00 0.00 0.00 4.40
2648 2887 5.201243 GTTCTTATGGATTTAGGGGCTGTT 58.799 41.667 0.00 0.00 0.00 3.16
2649 2888 5.466127 TCTTATGGATTTAGGGGCTGTTT 57.534 39.130 0.00 0.00 0.00 2.83
2650 2889 5.200483 TCTTATGGATTTAGGGGCTGTTTG 58.800 41.667 0.00 0.00 0.00 2.93
2651 2890 2.230130 TGGATTTAGGGGCTGTTTGG 57.770 50.000 0.00 0.00 0.00 3.28
2652 2891 1.713647 TGGATTTAGGGGCTGTTTGGA 59.286 47.619 0.00 0.00 0.00 3.53
2653 2892 2.314549 TGGATTTAGGGGCTGTTTGGAT 59.685 45.455 0.00 0.00 0.00 3.41
2654 2893 3.245948 TGGATTTAGGGGCTGTTTGGATT 60.246 43.478 0.00 0.00 0.00 3.01
2655 2894 4.017037 TGGATTTAGGGGCTGTTTGGATTA 60.017 41.667 0.00 0.00 0.00 1.75
2656 2895 5.147767 GGATTTAGGGGCTGTTTGGATTAT 58.852 41.667 0.00 0.00 0.00 1.28
2657 2896 5.011023 GGATTTAGGGGCTGTTTGGATTATG 59.989 44.000 0.00 0.00 0.00 1.90
2658 2897 4.871871 TTAGGGGCTGTTTGGATTATGA 57.128 40.909 0.00 0.00 0.00 2.15
2659 2898 3.018423 AGGGGCTGTTTGGATTATGAC 57.982 47.619 0.00 0.00 0.00 3.06
2660 2899 2.582636 AGGGGCTGTTTGGATTATGACT 59.417 45.455 0.00 0.00 0.00 3.41
2661 2900 3.785887 AGGGGCTGTTTGGATTATGACTA 59.214 43.478 0.00 0.00 0.00 2.59
2662 2901 4.416848 AGGGGCTGTTTGGATTATGACTAT 59.583 41.667 0.00 0.00 0.00 2.12
2663 2902 4.520492 GGGGCTGTTTGGATTATGACTATG 59.480 45.833 0.00 0.00 0.00 2.23
2664 2903 5.133221 GGGCTGTTTGGATTATGACTATGT 58.867 41.667 0.00 0.00 0.00 2.29
2665 2904 5.594317 GGGCTGTTTGGATTATGACTATGTT 59.406 40.000 0.00 0.00 0.00 2.71
2666 2905 6.096846 GGGCTGTTTGGATTATGACTATGTTT 59.903 38.462 0.00 0.00 0.00 2.83
2667 2906 6.974622 GGCTGTTTGGATTATGACTATGTTTG 59.025 38.462 0.00 0.00 0.00 2.93
2668 2907 6.473455 GCTGTTTGGATTATGACTATGTTTGC 59.527 38.462 0.00 0.00 0.00 3.68
2669 2908 6.862209 TGTTTGGATTATGACTATGTTTGCC 58.138 36.000 0.00 0.00 0.00 4.52
2670 2909 6.663093 TGTTTGGATTATGACTATGTTTGCCT 59.337 34.615 0.00 0.00 0.00 4.75
2671 2910 7.178274 TGTTTGGATTATGACTATGTTTGCCTT 59.822 33.333 0.00 0.00 0.00 4.35
2672 2911 8.682710 GTTTGGATTATGACTATGTTTGCCTTA 58.317 33.333 0.00 0.00 0.00 2.69
2673 2912 8.995027 TTGGATTATGACTATGTTTGCCTTAT 57.005 30.769 0.00 0.00 0.00 1.73
2674 2913 8.394971 TGGATTATGACTATGTTTGCCTTATG 57.605 34.615 0.00 0.00 0.00 1.90
2675 2914 7.998383 TGGATTATGACTATGTTTGCCTTATGT 59.002 33.333 0.00 0.00 0.00 2.29
2676 2915 8.850156 GGATTATGACTATGTTTGCCTTATGTT 58.150 33.333 0.00 0.00 0.00 2.71
2677 2916 9.669353 GATTATGACTATGTTTGCCTTATGTTG 57.331 33.333 0.00 0.00 0.00 3.33
2678 2917 5.309323 TGACTATGTTTGCCTTATGTTGC 57.691 39.130 0.00 0.00 0.00 4.17
2679 2918 4.157656 TGACTATGTTTGCCTTATGTTGCC 59.842 41.667 0.00 0.00 0.00 4.52
2680 2919 4.085733 ACTATGTTTGCCTTATGTTGCCA 58.914 39.130 0.00 0.00 0.00 4.92
2681 2920 2.810439 TGTTTGCCTTATGTTGCCAC 57.190 45.000 0.00 0.00 0.00 5.01
2682 2921 2.034878 TGTTTGCCTTATGTTGCCACA 58.965 42.857 0.00 0.00 37.31 4.17
2683 2922 2.632028 TGTTTGCCTTATGTTGCCACAT 59.368 40.909 8.64 8.64 46.07 3.21
2684 2923 3.070734 TGTTTGCCTTATGTTGCCACATT 59.929 39.130 8.93 0.00 41.16 2.71
2685 2924 4.281941 TGTTTGCCTTATGTTGCCACATTA 59.718 37.500 8.93 0.00 41.16 1.90
2686 2925 5.046735 TGTTTGCCTTATGTTGCCACATTAT 60.047 36.000 8.93 0.00 41.16 1.28
2687 2926 5.674052 TTGCCTTATGTTGCCACATTATT 57.326 34.783 8.93 0.00 41.16 1.40
2688 2927 5.674052 TGCCTTATGTTGCCACATTATTT 57.326 34.783 8.93 0.00 41.16 1.40
2689 2928 6.047511 TGCCTTATGTTGCCACATTATTTT 57.952 33.333 8.93 0.00 41.16 1.82
2690 2929 6.471146 TGCCTTATGTTGCCACATTATTTTT 58.529 32.000 8.93 0.00 41.16 1.94
2704 2943 2.279120 TTTTTGCCGCACTTGCCG 60.279 55.556 0.00 0.00 37.91 5.69
2705 2944 2.775856 TTTTTGCCGCACTTGCCGA 61.776 52.632 0.00 0.00 37.91 5.54
2706 2945 2.284798 TTTTTGCCGCACTTGCCGAA 62.285 50.000 0.00 0.00 37.91 4.30
2707 2946 2.945398 TTTTGCCGCACTTGCCGAAC 62.945 55.000 0.00 0.00 37.91 3.95
2708 2947 4.927782 TGCCGCACTTGCCGAACT 62.928 61.111 0.00 0.00 37.91 3.01
2709 2948 3.660111 GCCGCACTTGCCGAACTT 61.660 61.111 0.00 0.00 37.91 2.66
2710 2949 2.252260 CCGCACTTGCCGAACTTG 59.748 61.111 0.00 0.00 37.91 3.16
2711 2950 2.250939 CCGCACTTGCCGAACTTGA 61.251 57.895 0.00 0.00 37.91 3.02
2712 2951 1.205064 CGCACTTGCCGAACTTGAG 59.795 57.895 0.00 0.00 37.91 3.02
2713 2952 1.498865 CGCACTTGCCGAACTTGAGT 61.499 55.000 0.00 0.00 37.91 3.41
2714 2953 0.663153 GCACTTGCCGAACTTGAGTT 59.337 50.000 0.00 0.00 36.57 3.01
2715 2954 1.597937 GCACTTGCCGAACTTGAGTTG 60.598 52.381 0.30 0.00 34.97 3.16
2716 2955 0.663153 ACTTGCCGAACTTGAGTTGC 59.337 50.000 0.30 0.52 38.56 4.17
2717 2956 0.947244 CTTGCCGAACTTGAGTTGCT 59.053 50.000 0.30 0.00 38.56 3.91
2718 2957 1.334869 CTTGCCGAACTTGAGTTGCTT 59.665 47.619 0.30 0.00 38.56 3.91
2719 2958 2.248280 TGCCGAACTTGAGTTGCTTA 57.752 45.000 0.30 0.00 38.56 3.09
2720 2959 2.566913 TGCCGAACTTGAGTTGCTTAA 58.433 42.857 0.30 0.00 38.56 1.85
2721 2960 2.946329 TGCCGAACTTGAGTTGCTTAAA 59.054 40.909 0.30 0.00 38.56 1.52
2722 2961 3.568007 TGCCGAACTTGAGTTGCTTAAAT 59.432 39.130 0.30 0.00 38.56 1.40
2723 2962 4.037446 TGCCGAACTTGAGTTGCTTAAATT 59.963 37.500 0.30 0.00 38.56 1.82
2724 2963 4.382754 GCCGAACTTGAGTTGCTTAAATTG 59.617 41.667 0.30 0.00 38.56 2.32
2725 2964 5.519722 CCGAACTTGAGTTGCTTAAATTGT 58.480 37.500 0.30 0.00 38.56 2.71
2726 2965 5.977129 CCGAACTTGAGTTGCTTAAATTGTT 59.023 36.000 0.30 0.00 38.56 2.83
2727 2966 7.136119 CCGAACTTGAGTTGCTTAAATTGTTA 58.864 34.615 0.30 0.00 38.56 2.41
2728 2967 7.323656 CCGAACTTGAGTTGCTTAAATTGTTAG 59.676 37.037 0.30 0.00 38.56 2.34
2729 2968 7.855904 CGAACTTGAGTTGCTTAAATTGTTAGT 59.144 33.333 0.30 0.00 38.56 2.24
2730 2969 9.170584 GAACTTGAGTTGCTTAAATTGTTAGTC 57.829 33.333 0.30 0.00 38.56 2.59
2731 2970 8.220755 ACTTGAGTTGCTTAAATTGTTAGTCA 57.779 30.769 0.00 0.00 0.00 3.41
2732 2971 8.129211 ACTTGAGTTGCTTAAATTGTTAGTCAC 58.871 33.333 0.00 0.00 0.00 3.67
2733 2972 7.561021 TGAGTTGCTTAAATTGTTAGTCACA 57.439 32.000 0.00 0.00 0.00 3.58
2734 2973 7.414436 TGAGTTGCTTAAATTGTTAGTCACAC 58.586 34.615 0.00 0.00 33.98 3.82
2735 2974 7.282224 TGAGTTGCTTAAATTGTTAGTCACACT 59.718 33.333 0.00 0.00 33.98 3.55
2736 2975 7.996385 AGTTGCTTAAATTGTTAGTCACACTT 58.004 30.769 0.00 0.00 33.98 3.16
2737 2976 8.466798 AGTTGCTTAAATTGTTAGTCACACTTT 58.533 29.630 0.00 0.00 40.41 2.66
2738 2977 8.531530 GTTGCTTAAATTGTTAGTCACACTTTG 58.468 33.333 3.72 0.00 38.40 2.77
2739 2978 7.199766 TGCTTAAATTGTTAGTCACACTTTGG 58.800 34.615 3.72 0.00 38.40 3.28
2740 2979 6.143919 GCTTAAATTGTTAGTCACACTTTGGC 59.856 38.462 3.72 4.58 38.40 4.52
2741 2980 5.852282 AAATTGTTAGTCACACTTTGGCT 57.148 34.783 0.00 0.00 44.66 4.75
2742 2981 5.852282 AATTGTTAGTCACACTTTGGCTT 57.148 34.783 0.00 0.00 36.44 4.35
2743 2982 4.630894 TTGTTAGTCACACTTTGGCTTG 57.369 40.909 0.00 0.00 36.44 4.01
2744 2983 2.357637 TGTTAGTCACACTTTGGCTTGC 59.642 45.455 0.00 0.00 36.44 4.01
2745 2984 1.604604 TAGTCACACTTTGGCTTGCC 58.395 50.000 4.43 4.43 36.44 4.52
2746 2985 0.106519 AGTCACACTTTGGCTTGCCT 60.107 50.000 13.18 0.00 36.44 4.75
2747 2986 1.142870 AGTCACACTTTGGCTTGCCTA 59.857 47.619 13.18 2.12 36.44 3.93
2748 2987 1.953686 GTCACACTTTGGCTTGCCTAA 59.046 47.619 13.18 10.47 0.00 2.69
2749 2988 2.030805 GTCACACTTTGGCTTGCCTAAG 60.031 50.000 25.92 25.92 36.97 2.18
2750 2989 1.270550 CACACTTTGGCTTGCCTAAGG 59.729 52.381 28.97 22.12 34.40 2.69
2751 2990 0.890683 CACTTTGGCTTGCCTAAGGG 59.109 55.000 28.97 24.82 34.40 3.95
2752 2991 0.777446 ACTTTGGCTTGCCTAAGGGA 59.223 50.000 28.97 2.46 34.40 4.20
2753 2992 1.146982 ACTTTGGCTTGCCTAAGGGAA 59.853 47.619 28.97 7.95 34.40 3.97
2754 2993 2.225369 ACTTTGGCTTGCCTAAGGGAAT 60.225 45.455 28.97 13.21 31.43 3.01
2755 2994 2.143876 TTGGCTTGCCTAAGGGAATC 57.856 50.000 13.18 0.00 31.43 2.52
2756 2995 1.298953 TGGCTTGCCTAAGGGAATCT 58.701 50.000 13.18 0.00 31.43 2.40
2757 2996 1.640670 TGGCTTGCCTAAGGGAATCTT 59.359 47.619 13.18 0.00 39.40 2.40
2758 2997 2.027385 GGCTTGCCTAAGGGAATCTTG 58.973 52.381 4.11 0.00 36.93 3.02
2759 2998 1.406898 GCTTGCCTAAGGGAATCTTGC 59.593 52.381 0.00 0.00 36.93 4.01
2760 2999 2.027385 CTTGCCTAAGGGAATCTTGCC 58.973 52.381 0.00 0.00 39.23 4.52
2761 3000 0.998928 TGCCTAAGGGAATCTTGCCA 59.001 50.000 3.19 0.00 41.75 4.92
2762 3001 1.340991 TGCCTAAGGGAATCTTGCCAC 60.341 52.381 3.19 0.00 41.75 5.01
2763 3002 1.340991 GCCTAAGGGAATCTTGCCACA 60.341 52.381 3.19 0.00 41.75 4.17
2764 3003 2.369394 CCTAAGGGAATCTTGCCACAC 58.631 52.381 3.19 0.00 41.75 3.82
2765 3004 2.025887 CCTAAGGGAATCTTGCCACACT 60.026 50.000 3.19 0.00 41.75 3.55
2766 3005 2.683211 AAGGGAATCTTGCCACACTT 57.317 45.000 3.19 0.00 41.75 3.16
2767 3006 2.683211 AGGGAATCTTGCCACACTTT 57.317 45.000 3.19 0.00 41.75 2.66
2768 3007 2.962859 AGGGAATCTTGCCACACTTTT 58.037 42.857 3.19 0.00 41.75 2.27
2769 3008 3.308401 AGGGAATCTTGCCACACTTTTT 58.692 40.909 3.19 0.00 41.75 1.94
2770 3009 3.070015 AGGGAATCTTGCCACACTTTTTG 59.930 43.478 3.19 0.00 41.75 2.44
2771 3010 3.181466 GGGAATCTTGCCACACTTTTTGT 60.181 43.478 0.00 0.00 39.97 2.83
2772 3011 8.796649 AAGGGAATCTTGCCACACTTTTTGTG 62.797 42.308 3.19 0.00 43.76 3.33
2786 3025 6.144854 CACTTTTTGTGTCTATGACATGTGG 58.855 40.000 1.15 0.00 44.63 4.17
2787 3026 5.241506 ACTTTTTGTGTCTATGACATGTGGG 59.758 40.000 1.15 0.00 44.63 4.61
2788 3027 3.348647 TTGTGTCTATGACATGTGGGG 57.651 47.619 1.15 0.00 44.63 4.96
2789 3028 2.265367 TGTGTCTATGACATGTGGGGT 58.735 47.619 1.15 0.00 44.63 4.95
2790 3029 2.642311 TGTGTCTATGACATGTGGGGTT 59.358 45.455 1.15 0.00 44.63 4.11
2791 3030 3.270877 GTGTCTATGACATGTGGGGTTC 58.729 50.000 1.15 0.00 44.63 3.62
2792 3031 2.909662 TGTCTATGACATGTGGGGTTCA 59.090 45.455 1.15 0.00 37.67 3.18
2793 3032 3.270877 GTCTATGACATGTGGGGTTCAC 58.729 50.000 1.15 0.00 38.41 3.18
2794 3033 3.055094 GTCTATGACATGTGGGGTTCACT 60.055 47.826 1.15 0.00 38.57 3.41
2795 3034 2.205022 ATGACATGTGGGGTTCACTG 57.795 50.000 1.15 0.00 46.20 3.66
2796 3035 0.537143 TGACATGTGGGGTTCACTGC 60.537 55.000 1.15 0.00 46.20 4.40
2797 3036 0.250901 GACATGTGGGGTTCACTGCT 60.251 55.000 1.15 0.00 46.20 4.24
2798 3037 0.250901 ACATGTGGGGTTCACTGCTC 60.251 55.000 0.00 0.00 46.20 4.26
2799 3038 0.250858 CATGTGGGGTTCACTGCTCA 60.251 55.000 0.00 0.00 46.20 4.26
2800 3039 0.700564 ATGTGGGGTTCACTGCTCAT 59.299 50.000 0.00 0.00 46.20 2.90
2801 3040 1.357137 TGTGGGGTTCACTGCTCATA 58.643 50.000 0.00 0.00 46.20 2.15
2802 3041 1.702401 TGTGGGGTTCACTGCTCATAA 59.298 47.619 0.00 0.00 46.20 1.90
2803 3042 2.107378 TGTGGGGTTCACTGCTCATAAA 59.893 45.455 0.00 0.00 46.20 1.40
2804 3043 3.153919 GTGGGGTTCACTGCTCATAAAA 58.846 45.455 0.00 0.00 42.86 1.52
2805 3044 3.572255 GTGGGGTTCACTGCTCATAAAAA 59.428 43.478 0.00 0.00 42.86 1.94
2825 3064 4.871933 AAAATTCTTGCCTTAGGTGTGG 57.128 40.909 0.00 0.00 0.00 4.17
2832 3071 2.025589 GCCTTAGGTGTGGCTAGAAC 57.974 55.000 0.00 0.00 45.26 3.01
2833 3072 1.407025 GCCTTAGGTGTGGCTAGAACC 60.407 57.143 0.00 0.00 45.26 3.62
2834 3073 1.906574 CCTTAGGTGTGGCTAGAACCA 59.093 52.381 0.00 0.00 36.37 3.67
2835 3074 2.093447 CCTTAGGTGTGGCTAGAACCAG 60.093 54.545 0.00 0.00 41.46 4.00
2836 3075 2.615986 TAGGTGTGGCTAGAACCAGA 57.384 50.000 0.00 0.00 41.46 3.86
2841 3080 2.372852 TGGCTAGAACCAGACACCC 58.627 57.895 0.00 0.00 33.75 4.61
2842 3081 0.472925 TGGCTAGAACCAGACACCCA 60.473 55.000 0.00 0.00 33.75 4.51
2843 3082 0.036294 GGCTAGAACCAGACACCCAC 60.036 60.000 0.00 0.00 0.00 4.61
2844 3083 0.036294 GCTAGAACCAGACACCCACC 60.036 60.000 0.00 0.00 0.00 4.61
2845 3084 1.645710 CTAGAACCAGACACCCACCT 58.354 55.000 0.00 0.00 0.00 4.00
2846 3085 2.816411 CTAGAACCAGACACCCACCTA 58.184 52.381 0.00 0.00 0.00 3.08
2847 3086 2.112279 AGAACCAGACACCCACCTAA 57.888 50.000 0.00 0.00 0.00 2.69
2848 3087 1.697982 AGAACCAGACACCCACCTAAC 59.302 52.381 0.00 0.00 0.00 2.34
2849 3088 1.697982 GAACCAGACACCCACCTAACT 59.302 52.381 0.00 0.00 0.00 2.24
2850 3089 1.815757 ACCAGACACCCACCTAACTT 58.184 50.000 0.00 0.00 0.00 2.66
2851 3090 1.420138 ACCAGACACCCACCTAACTTG 59.580 52.381 0.00 0.00 0.00 3.16
2852 3091 1.271379 CCAGACACCCACCTAACTTGG 60.271 57.143 0.00 0.00 0.00 3.61
2853 3092 1.420138 CAGACACCCACCTAACTTGGT 59.580 52.381 0.00 0.00 41.77 3.67
2854 3093 1.697982 AGACACCCACCTAACTTGGTC 59.302 52.381 0.00 0.00 38.45 4.02
2855 3094 1.418637 GACACCCACCTAACTTGGTCA 59.581 52.381 0.00 0.00 38.45 4.02
2856 3095 1.847737 ACACCCACCTAACTTGGTCAA 59.152 47.619 0.00 0.00 38.45 3.18
2857 3096 2.242708 ACACCCACCTAACTTGGTCAAA 59.757 45.455 0.00 0.00 38.45 2.69
2858 3097 2.621526 CACCCACCTAACTTGGTCAAAC 59.378 50.000 0.00 0.00 38.45 2.93
2859 3098 2.512476 ACCCACCTAACTTGGTCAAACT 59.488 45.455 0.00 0.00 38.45 2.66
2860 3099 3.053170 ACCCACCTAACTTGGTCAAACTT 60.053 43.478 0.00 0.00 38.45 2.66
2861 3100 3.317993 CCCACCTAACTTGGTCAAACTTG 59.682 47.826 0.00 0.00 38.45 3.16
2862 3101 3.243401 CCACCTAACTTGGTCAAACTTGC 60.243 47.826 0.00 0.00 38.45 4.01
2863 3102 2.956333 ACCTAACTTGGTCAAACTTGCC 59.044 45.455 0.00 0.00 34.86 4.52
2864 3103 3.222603 CCTAACTTGGTCAAACTTGCCT 58.777 45.455 5.07 0.00 0.00 4.75
2865 3104 4.141344 ACCTAACTTGGTCAAACTTGCCTA 60.141 41.667 5.07 0.00 34.86 3.93
2866 3105 4.825085 CCTAACTTGGTCAAACTTGCCTAA 59.175 41.667 5.07 0.00 0.00 2.69
2867 3106 4.918810 AACTTGGTCAAACTTGCCTAAG 57.081 40.909 0.00 0.00 39.86 2.18
2868 3107 3.222603 ACTTGGTCAAACTTGCCTAAGG 58.777 45.455 2.41 0.00 38.26 2.69
2869 3108 3.222603 CTTGGTCAAACTTGCCTAAGGT 58.777 45.455 0.00 0.00 38.26 3.50
2870 3109 2.582052 TGGTCAAACTTGCCTAAGGTG 58.418 47.619 0.00 0.00 38.26 4.00
2871 3110 2.173782 TGGTCAAACTTGCCTAAGGTGA 59.826 45.455 0.00 0.00 38.26 4.02
2872 3111 2.814336 GGTCAAACTTGCCTAAGGTGAG 59.186 50.000 0.00 0.00 38.26 3.51
2873 3112 2.814336 GTCAAACTTGCCTAAGGTGAGG 59.186 50.000 0.00 0.00 38.26 3.86
2874 3113 2.441750 TCAAACTTGCCTAAGGTGAGGT 59.558 45.455 0.00 0.00 39.02 3.85
2875 3114 2.554032 CAAACTTGCCTAAGGTGAGGTG 59.446 50.000 0.00 0.00 39.02 4.00
2876 3115 1.435256 ACTTGCCTAAGGTGAGGTGT 58.565 50.000 0.00 0.00 39.02 4.16
2877 3116 1.072331 ACTTGCCTAAGGTGAGGTGTG 59.928 52.381 0.00 0.00 39.02 3.82
2878 3117 0.400213 TTGCCTAAGGTGAGGTGTGG 59.600 55.000 0.00 0.00 39.02 4.17
2879 3118 1.377333 GCCTAAGGTGAGGTGTGGC 60.377 63.158 0.00 0.00 39.02 5.01
2880 3119 2.066340 CCTAAGGTGAGGTGTGGCA 58.934 57.895 0.00 0.00 0.00 4.92
2881 3120 0.036010 CCTAAGGTGAGGTGTGGCAG 60.036 60.000 0.00 0.00 0.00 4.85
2882 3121 0.976641 CTAAGGTGAGGTGTGGCAGA 59.023 55.000 0.00 0.00 0.00 4.26
2883 3122 0.976641 TAAGGTGAGGTGTGGCAGAG 59.023 55.000 0.00 0.00 0.00 3.35
2884 3123 1.056700 AAGGTGAGGTGTGGCAGAGT 61.057 55.000 0.00 0.00 0.00 3.24
2885 3124 1.302033 GGTGAGGTGTGGCAGAGTG 60.302 63.158 0.00 0.00 0.00 3.51
2886 3125 1.447643 GTGAGGTGTGGCAGAGTGT 59.552 57.895 0.00 0.00 0.00 3.55
2887 3126 0.882042 GTGAGGTGTGGCAGAGTGTG 60.882 60.000 0.00 0.00 0.00 3.82
2888 3127 1.302033 GAGGTGTGGCAGAGTGTGG 60.302 63.158 0.00 0.00 0.00 4.17
2897 3136 2.838386 GCAGAGTGTGGCAATATGTG 57.162 50.000 0.00 0.00 0.00 3.21
2898 3137 1.402968 GCAGAGTGTGGCAATATGTGG 59.597 52.381 0.00 0.00 0.00 4.17
2907 3146 2.584492 GCAATATGTGGCTGGAAACC 57.416 50.000 0.00 0.00 0.00 3.27
2908 3147 1.824230 GCAATATGTGGCTGGAAACCA 59.176 47.619 0.00 0.00 33.84 3.67
2909 3148 2.233431 GCAATATGTGGCTGGAAACCAA 59.767 45.455 0.00 0.00 39.39 3.67
2910 3149 3.306641 GCAATATGTGGCTGGAAACCAAA 60.307 43.478 0.00 0.00 39.39 3.28
2911 3150 4.244862 CAATATGTGGCTGGAAACCAAAC 58.755 43.478 0.00 0.00 39.39 2.93
2912 3151 1.786937 ATGTGGCTGGAAACCAAACA 58.213 45.000 0.00 0.00 39.39 2.83
2913 3152 1.110442 TGTGGCTGGAAACCAAACAG 58.890 50.000 0.00 0.00 39.39 3.16
2917 3156 2.049435 CTGGAAACCAAACAGCCCC 58.951 57.895 0.00 0.00 30.80 5.80
2918 3157 0.469892 CTGGAAACCAAACAGCCCCT 60.470 55.000 0.00 0.00 30.80 4.79
2919 3158 0.031616 TGGAAACCAAACAGCCCCTT 60.032 50.000 0.00 0.00 0.00 3.95
2920 3159 1.218196 TGGAAACCAAACAGCCCCTTA 59.782 47.619 0.00 0.00 0.00 2.69
3069 3309 1.470098 GATTGTGGTCAGTCATGTGCC 59.530 52.381 0.00 0.00 31.86 5.01
3145 3385 8.556194 GGCTACATCATACACGATCAAAATAAA 58.444 33.333 0.00 0.00 0.00 1.40
3197 3437 4.464112 GGACACTCTTATTTTCGCACAAC 58.536 43.478 0.00 0.00 0.00 3.32
3842 4103 7.092716 GTGTACCTTTTCTGATTGATTTGCAT 58.907 34.615 0.00 0.00 0.00 3.96
4252 4514 8.089625 TCTAATGGATAAGAAATGTGACTGGA 57.910 34.615 0.00 0.00 0.00 3.86
4300 4562 7.148507 GGTGTGACTAGACAATCTCAATTTCAG 60.149 40.741 0.00 0.00 0.00 3.02
4339 4601 0.813610 TTGCAGAGACACACCGTTGG 60.814 55.000 0.00 0.00 0.00 3.77
4341 4603 0.946221 GCAGAGACACACCGTTGGAG 60.946 60.000 0.00 0.00 0.00 3.86
4435 4758 5.388654 ACCTCAAAAGTGAAATCAGGTGAT 58.611 37.500 0.00 0.00 36.07 3.06
4546 4869 8.669946 TTTAATTGTCCATCGATACTGCAATA 57.330 30.769 0.00 0.00 0.00 1.90
4548 4871 7.750229 AATTGTCCATCGATACTGCAATATT 57.250 32.000 0.00 0.00 0.00 1.28
4554 4877 9.419297 GTCCATCGATACTGCAATATTACTTTA 57.581 33.333 0.00 0.00 0.00 1.85
4773 5096 1.104577 GTCACTTTGGGGCGGTGAAA 61.105 55.000 0.00 0.00 40.86 2.69
4837 5160 1.493950 CGCGATGAAGCTAAGCCCTG 61.494 60.000 0.00 0.00 34.40 4.45
4874 5197 5.106317 GGAAAGAGCATTTGTCCGTTGATAA 60.106 40.000 0.00 0.00 0.00 1.75
5079 5402 2.683968 TGTCAAGGCGTTGTATGTCTC 58.316 47.619 17.96 3.68 34.98 3.36
5229 5571 0.679640 CCAATGGCTCTTTGGGCGTA 60.680 55.000 10.27 0.00 40.00 4.42
5244 5586 5.014808 TGGGCGTACTAGGAAGAATAAAC 57.985 43.478 0.00 0.00 0.00 2.01
5337 5679 7.801104 TCTCTCTCTAATCATGTACTCTCTGT 58.199 38.462 0.00 0.00 0.00 3.41
5397 5740 5.674215 CACGTTTTAGTGTGTTTTGTTCC 57.326 39.130 0.00 0.00 37.35 3.62
5406 5749 4.041723 GTGTGTTTTGTTCCCTCATTTCG 58.958 43.478 0.00 0.00 0.00 3.46
5410 5753 3.502123 TTTGTTCCCTCATTTCGGTCT 57.498 42.857 0.00 0.00 0.00 3.85
5411 5754 2.472695 TGTTCCCTCATTTCGGTCTG 57.527 50.000 0.00 0.00 0.00 3.51
5412 5755 1.697432 TGTTCCCTCATTTCGGTCTGT 59.303 47.619 0.00 0.00 0.00 3.41
5413 5756 2.901192 TGTTCCCTCATTTCGGTCTGTA 59.099 45.455 0.00 0.00 0.00 2.74
5420 5763 6.551975 TCCCTCATTTCGGTCTGTATGTTATA 59.448 38.462 0.00 0.00 0.00 0.98
5524 5875 7.455641 AGAGACTTCAATAGGGATACATACG 57.544 40.000 0.00 0.00 34.47 3.06
5632 5988 2.859165 TGAAGGGAGTGGTAGCAAAG 57.141 50.000 0.00 0.00 0.00 2.77
5633 5989 2.054799 TGAAGGGAGTGGTAGCAAAGT 58.945 47.619 0.00 0.00 0.00 2.66
5673 6029 6.072649 TCTTGGATGCATATGGACATGATTT 58.927 36.000 0.00 0.00 0.00 2.17
5674 6030 6.551975 TCTTGGATGCATATGGACATGATTTT 59.448 34.615 0.00 0.00 0.00 1.82
5680 6036 9.403110 GATGCATATGGACATGATTTTAGAAAC 57.597 33.333 0.00 0.00 0.00 2.78
5740 6096 4.322567 ACCGAACTCTTAGACTACGTTCT 58.677 43.478 0.00 0.00 33.63 3.01
5755 6111 2.572104 ACGTTCTAAGAATGCCCCTCTT 59.428 45.455 0.00 0.00 37.00 2.85
5789 6145 5.470098 TGGAGATTTTTCTTTGAGAACTCCG 59.530 40.000 14.90 0.00 42.29 4.63
5833 6189 6.321181 ACCACAGTTTTGAGTGATACAAACAT 59.679 34.615 0.00 0.00 37.97 2.71
5834 6190 7.147915 ACCACAGTTTTGAGTGATACAAACATT 60.148 33.333 0.00 0.00 37.97 2.71
5878 6234 1.077501 TGGCATGCCAGCTAAGGTC 60.078 57.895 35.59 5.78 41.89 3.85
5879 6235 1.077501 GGCATGCCAGCTAAGGTCA 60.078 57.895 32.08 0.00 35.81 4.02
5880 6236 1.099879 GGCATGCCAGCTAAGGTCAG 61.100 60.000 32.08 0.00 35.81 3.51
5881 6237 0.393537 GCATGCCAGCTAAGGTCAGT 60.394 55.000 6.36 0.00 0.00 3.41
5882 6238 1.134401 GCATGCCAGCTAAGGTCAGTA 60.134 52.381 6.36 0.00 0.00 2.74
5883 6239 2.486191 GCATGCCAGCTAAGGTCAGTAT 60.486 50.000 6.36 0.00 0.00 2.12
5884 6240 3.244215 GCATGCCAGCTAAGGTCAGTATA 60.244 47.826 6.36 0.00 0.00 1.47
5910 6266 1.300620 CACGGAACTCTGTCGCCAA 60.301 57.895 0.00 0.00 32.07 4.52
5917 6273 0.969149 ACTCTGTCGCCAAGTGATGA 59.031 50.000 0.00 0.00 0.00 2.92
5940 6296 2.683768 TGTTTTTGGTAATGCCCAGGT 58.316 42.857 0.00 0.00 35.49 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.281345 GGCGCATGAGGAGGATGG 60.281 66.667 10.83 0.00 0.00 3.51
81 88 3.435186 GAAGGCTGCGAAGGCACC 61.435 66.667 20.75 6.29 46.21 5.01
82 89 2.359230 AGAAGGCTGCGAAGGCAC 60.359 61.111 20.75 12.61 46.21 5.01
101 108 2.722201 GGAGCACGATCTCCCCGTT 61.722 63.158 14.08 0.00 45.40 4.44
123 130 3.465403 CAGGGAGACAGGGCGAGG 61.465 72.222 0.00 0.00 0.00 4.63
124 131 3.465403 CCAGGGAGACAGGGCGAG 61.465 72.222 0.00 0.00 0.00 5.03
130 137 3.007920 AGGCTGCCAGGGAGACAG 61.008 66.667 22.65 1.72 34.48 3.51
172 179 4.377897 ACCTTCCTCTTTTTCTACGTGTG 58.622 43.478 0.00 0.00 0.00 3.82
177 184 6.096564 TCCTCGATACCTTCCTCTTTTTCTAC 59.903 42.308 0.00 0.00 0.00 2.59
179 186 5.024118 TCCTCGATACCTTCCTCTTTTTCT 58.976 41.667 0.00 0.00 0.00 2.52
180 187 5.127356 TCTCCTCGATACCTTCCTCTTTTTC 59.873 44.000 0.00 0.00 0.00 2.29
181 188 5.024118 TCTCCTCGATACCTTCCTCTTTTT 58.976 41.667 0.00 0.00 0.00 1.94
205 216 2.203195 GCGGCAGTGGCATATCCA 60.203 61.111 17.80 0.00 44.18 3.41
207 218 3.349006 CGGCGGCAGTGGCATATC 61.349 66.667 17.80 2.31 43.71 1.63
225 236 1.133294 TGTCTAGGTGGTGAGTGGTGA 60.133 52.381 0.00 0.00 0.00 4.02
226 237 1.273606 CTGTCTAGGTGGTGAGTGGTG 59.726 57.143 0.00 0.00 0.00 4.17
227 238 1.147191 TCTGTCTAGGTGGTGAGTGGT 59.853 52.381 0.00 0.00 0.00 4.16
228 239 1.924731 TCTGTCTAGGTGGTGAGTGG 58.075 55.000 0.00 0.00 0.00 4.00
229 240 2.417924 GCATCTGTCTAGGTGGTGAGTG 60.418 54.545 0.00 0.00 35.50 3.51
230 241 1.827969 GCATCTGTCTAGGTGGTGAGT 59.172 52.381 0.00 0.00 35.50 3.41
231 242 1.202348 CGCATCTGTCTAGGTGGTGAG 60.202 57.143 0.00 0.00 35.50 3.51
243 254 3.181471 CCTTTCTCCTACATCGCATCTGT 60.181 47.826 0.00 0.00 0.00 3.41
261 272 0.550914 TGTGGTTCTGGCAGTCCTTT 59.449 50.000 23.40 0.00 0.00 3.11
311 332 3.560068 CCATACTTCGGCAAATACTGTCC 59.440 47.826 0.00 0.00 0.00 4.02
443 464 2.887568 CGCGCTCACCTTAGCCAG 60.888 66.667 5.56 0.00 39.43 4.85
514 568 1.074319 GCAGCGAACCATTGCATGTG 61.074 55.000 0.00 0.00 38.53 3.21
574 656 1.630244 GCATCTGTCACACGCTCCAC 61.630 60.000 0.00 0.00 0.00 4.02
575 657 1.374631 GCATCTGTCACACGCTCCA 60.375 57.895 0.00 0.00 0.00 3.86
588 672 4.335416 TCGAATTGGAGAAAAAGGCATCT 58.665 39.130 0.00 0.00 0.00 2.90
620 704 1.823295 GGCCTCGAGTCAGCCATAA 59.177 57.895 21.89 0.00 46.34 1.90
641 725 2.047061 TCTGCTGTTAATCGGGCCTAT 58.953 47.619 0.84 0.00 0.00 2.57
649 733 2.396590 TTCCCGGTCTGCTGTTAATC 57.603 50.000 0.00 0.00 0.00 1.75
696 780 0.366871 CGCACTGTTCACGCTACATC 59.633 55.000 0.00 0.00 0.00 3.06
716 800 3.128375 CGCCTGGGCTTTTGTTGT 58.872 55.556 10.04 0.00 39.32 3.32
734 960 7.776933 TGACCATTAGATCTCTTTTCATTCG 57.223 36.000 0.00 0.00 0.00 3.34
743 969 6.876257 GTGTGAGTTTTGACCATTAGATCTCT 59.124 38.462 0.00 0.00 0.00 3.10
837 1064 7.590279 GCGCTATTGGGCTTTTATATTTAGAA 58.410 34.615 8.89 0.00 46.81 2.10
1046 1274 4.728110 ATGGCGCTGCTGCTTCCA 62.728 61.111 21.95 21.95 41.29 3.53
1169 1397 2.828877 AGTGAACGAAATCCACGACAA 58.171 42.857 0.00 0.00 36.06 3.18
1314 1543 1.717032 TGGAGAGGTTAGCCGCATAT 58.283 50.000 1.61 0.00 40.50 1.78
1386 1623 4.152938 TCAGTTCATCTCGAAGTTGCAATG 59.847 41.667 0.59 0.00 34.92 2.82
1485 1722 6.257411 CAGTATCTCAAATGGTGCACTAGAAG 59.743 42.308 17.98 7.14 0.00 2.85
1519 1756 4.098807 CCCCGTAATTCAATGGTAAAAGGG 59.901 45.833 0.00 0.00 0.00 3.95
1554 1791 8.042515 CCACCATAAATGACTGGAAAATTCATT 58.957 33.333 0.00 0.00 39.22 2.57
1563 1800 4.666412 TTTCCCACCATAAATGACTGGA 57.334 40.909 7.75 1.07 36.35 3.86
1565 1802 6.934056 TCAAATTTCCCACCATAAATGACTG 58.066 36.000 0.00 0.00 0.00 3.51
1670 1907 6.240292 CCTTGATATAAGAAGGCCTTGGGTAT 60.240 42.308 26.25 18.24 36.34 2.73
1687 1924 7.380423 AATACTACTTGGCACTCCTTGATAT 57.620 36.000 0.00 0.00 0.00 1.63
1730 1967 6.895607 TTACGCGATGATAATGAAGTGAAA 57.104 33.333 15.93 0.00 0.00 2.69
1895 2133 7.712639 CAGTAATAAACATATCCTGCTGTGAGT 59.287 37.037 0.00 0.00 0.00 3.41
1989 2227 7.573710 TCCTACTTCAACATATAAACAGCCAT 58.426 34.615 0.00 0.00 0.00 4.40
2052 2290 0.820871 AAGCTGAACCCGCAAAAACA 59.179 45.000 0.00 0.00 0.00 2.83
2121 2360 8.894768 ATAGCCAACTAAAGATCAAGACATAC 57.105 34.615 0.00 0.00 30.45 2.39
2205 2444 9.243637 CACTTTGCTGTTTAAATTAGCTTGTAA 57.756 29.630 20.87 9.73 38.25 2.41
2291 2530 9.847224 ACTAACATTCCAAAGTAGAGAAAAAGA 57.153 29.630 0.00 0.00 0.00 2.52
2295 2534 8.349983 GCAAACTAACATTCCAAAGTAGAGAAA 58.650 33.333 0.00 0.00 0.00 2.52
2308 2547 9.624697 TTAATTCACATGAGCAAACTAACATTC 57.375 29.630 0.00 0.00 0.00 2.67
2337 2576 5.183140 ACTCCAACATGCTATTTGTTACCAC 59.817 40.000 0.00 0.00 35.61 4.16
2338 2577 5.321102 ACTCCAACATGCTATTTGTTACCA 58.679 37.500 0.00 0.00 35.61 3.25
2640 2879 3.018423 AGTCATAATCCAAACAGCCCC 57.982 47.619 0.00 0.00 0.00 5.80
2641 2880 5.133221 ACATAGTCATAATCCAAACAGCCC 58.867 41.667 0.00 0.00 0.00 5.19
2642 2881 6.699575 AACATAGTCATAATCCAAACAGCC 57.300 37.500 0.00 0.00 0.00 4.85
2643 2882 6.473455 GCAAACATAGTCATAATCCAAACAGC 59.527 38.462 0.00 0.00 0.00 4.40
2644 2883 6.974622 GGCAAACATAGTCATAATCCAAACAG 59.025 38.462 0.00 0.00 0.00 3.16
2645 2884 6.663093 AGGCAAACATAGTCATAATCCAAACA 59.337 34.615 0.00 0.00 0.00 2.83
2646 2885 7.100458 AGGCAAACATAGTCATAATCCAAAC 57.900 36.000 0.00 0.00 0.00 2.93
2647 2886 7.716799 AAGGCAAACATAGTCATAATCCAAA 57.283 32.000 0.00 0.00 0.00 3.28
2648 2887 8.849168 CATAAGGCAAACATAGTCATAATCCAA 58.151 33.333 0.00 0.00 0.00 3.53
2649 2888 7.998383 ACATAAGGCAAACATAGTCATAATCCA 59.002 33.333 0.00 0.00 0.00 3.41
2650 2889 8.396272 ACATAAGGCAAACATAGTCATAATCC 57.604 34.615 0.00 0.00 0.00 3.01
2651 2890 9.669353 CAACATAAGGCAAACATAGTCATAATC 57.331 33.333 0.00 0.00 0.00 1.75
2652 2891 8.137437 GCAACATAAGGCAAACATAGTCATAAT 58.863 33.333 0.00 0.00 0.00 1.28
2653 2892 7.416213 GGCAACATAAGGCAAACATAGTCATAA 60.416 37.037 0.00 0.00 0.00 1.90
2654 2893 6.039270 GGCAACATAAGGCAAACATAGTCATA 59.961 38.462 0.00 0.00 0.00 2.15
2655 2894 5.163519 GGCAACATAAGGCAAACATAGTCAT 60.164 40.000 0.00 0.00 0.00 3.06
2656 2895 4.157656 GGCAACATAAGGCAAACATAGTCA 59.842 41.667 0.00 0.00 0.00 3.41
2657 2896 4.157656 TGGCAACATAAGGCAAACATAGTC 59.842 41.667 0.00 0.00 46.17 2.59
2658 2897 4.085733 TGGCAACATAAGGCAAACATAGT 58.914 39.130 0.00 0.00 46.17 2.12
2659 2898 4.717233 TGGCAACATAAGGCAAACATAG 57.283 40.909 0.00 0.00 46.17 2.23
2687 2926 2.279120 CGGCAAGTGCGGCAAAAA 60.279 55.556 3.23 0.00 43.26 1.94
2688 2927 2.775856 TTCGGCAAGTGCGGCAAAA 61.776 52.632 3.23 0.00 43.26 2.44
2689 2928 3.212682 TTCGGCAAGTGCGGCAAA 61.213 55.556 3.23 0.00 43.26 3.68
2690 2929 3.959975 GTTCGGCAAGTGCGGCAA 61.960 61.111 3.23 0.20 43.26 4.52
2691 2930 4.927782 AGTTCGGCAAGTGCGGCA 62.928 61.111 0.00 0.00 43.26 5.69
2692 2931 3.660111 AAGTTCGGCAAGTGCGGC 61.660 61.111 6.01 0.00 43.26 6.53
2693 2932 2.175184 CTCAAGTTCGGCAAGTGCGG 62.175 60.000 4.58 4.58 43.26 5.69
2694 2933 1.205064 CTCAAGTTCGGCAAGTGCG 59.795 57.895 0.00 0.00 43.26 5.34
2695 2934 0.663153 AACTCAAGTTCGGCAAGTGC 59.337 50.000 0.00 0.00 35.06 4.40
2696 2935 1.597937 GCAACTCAAGTTCGGCAAGTG 60.598 52.381 0.00 0.00 35.83 3.16
2697 2936 0.663153 GCAACTCAAGTTCGGCAAGT 59.337 50.000 0.00 0.00 35.83 3.16
2698 2937 0.947244 AGCAACTCAAGTTCGGCAAG 59.053 50.000 7.64 0.00 35.83 4.01
2699 2938 1.388547 AAGCAACTCAAGTTCGGCAA 58.611 45.000 7.64 0.00 35.83 4.52
2700 2939 2.248280 TAAGCAACTCAAGTTCGGCA 57.752 45.000 7.64 0.00 35.83 5.69
2701 2940 3.619233 TTTAAGCAACTCAAGTTCGGC 57.381 42.857 0.00 0.00 35.83 5.54
2702 2941 5.519722 ACAATTTAAGCAACTCAAGTTCGG 58.480 37.500 0.00 0.00 35.83 4.30
2703 2942 7.855904 ACTAACAATTTAAGCAACTCAAGTTCG 59.144 33.333 0.00 0.00 35.83 3.95
2704 2943 9.170584 GACTAACAATTTAAGCAACTCAAGTTC 57.829 33.333 0.00 0.00 35.83 3.01
2705 2944 8.682710 TGACTAACAATTTAAGCAACTCAAGTT 58.317 29.630 0.00 0.00 39.12 2.66
2706 2945 8.129211 GTGACTAACAATTTAAGCAACTCAAGT 58.871 33.333 0.00 0.00 0.00 3.16
2707 2946 8.128582 TGTGACTAACAATTTAAGCAACTCAAG 58.871 33.333 0.00 0.00 35.24 3.02
2708 2947 7.913297 GTGTGACTAACAATTTAAGCAACTCAA 59.087 33.333 0.00 0.00 41.57 3.02
2709 2948 7.282224 AGTGTGACTAACAATTTAAGCAACTCA 59.718 33.333 0.00 0.00 41.57 3.41
2710 2949 7.639945 AGTGTGACTAACAATTTAAGCAACTC 58.360 34.615 0.00 0.00 41.57 3.01
2711 2950 7.568199 AGTGTGACTAACAATTTAAGCAACT 57.432 32.000 0.00 0.00 41.57 3.16
2721 2960 4.499696 GCAAGCCAAAGTGTGACTAACAAT 60.500 41.667 0.00 0.00 41.57 2.71
2722 2961 3.181491 GCAAGCCAAAGTGTGACTAACAA 60.181 43.478 0.00 0.00 41.57 2.83
2723 2962 2.357637 GCAAGCCAAAGTGTGACTAACA 59.642 45.455 0.00 0.00 36.04 2.41
2724 2963 2.287608 GGCAAGCCAAAGTGTGACTAAC 60.288 50.000 6.14 0.00 35.81 2.34
2725 2964 1.953686 GGCAAGCCAAAGTGTGACTAA 59.046 47.619 6.14 0.00 35.81 2.24
2726 2965 1.142870 AGGCAAGCCAAAGTGTGACTA 59.857 47.619 14.40 0.00 38.92 2.59
2727 2966 0.106519 AGGCAAGCCAAAGTGTGACT 60.107 50.000 14.40 0.00 38.92 3.41
2728 2967 1.604604 TAGGCAAGCCAAAGTGTGAC 58.395 50.000 14.40 0.00 38.92 3.67
2729 2968 2.229792 CTTAGGCAAGCCAAAGTGTGA 58.770 47.619 14.40 0.00 38.92 3.58
2730 2969 1.270550 CCTTAGGCAAGCCAAAGTGTG 59.729 52.381 14.40 0.00 38.92 3.82
2731 2970 1.620822 CCTTAGGCAAGCCAAAGTGT 58.379 50.000 14.40 0.00 38.92 3.55
2732 2971 0.890683 CCCTTAGGCAAGCCAAAGTG 59.109 55.000 14.40 0.00 38.92 3.16
2733 2972 0.777446 TCCCTTAGGCAAGCCAAAGT 59.223 50.000 14.40 0.00 38.92 2.66
2734 2973 1.923356 TTCCCTTAGGCAAGCCAAAG 58.077 50.000 14.40 0.00 38.92 2.77
2735 2974 2.042979 AGATTCCCTTAGGCAAGCCAAA 59.957 45.455 14.40 0.00 38.92 3.28
2736 2975 1.640670 AGATTCCCTTAGGCAAGCCAA 59.359 47.619 14.40 4.98 38.92 4.52
2737 2976 1.298953 AGATTCCCTTAGGCAAGCCA 58.701 50.000 14.40 0.00 38.92 4.75
2738 2977 2.027385 CAAGATTCCCTTAGGCAAGCC 58.973 52.381 2.02 2.02 32.86 4.35
2739 2978 1.406898 GCAAGATTCCCTTAGGCAAGC 59.593 52.381 0.00 0.00 32.86 4.01
2740 2979 2.027385 GGCAAGATTCCCTTAGGCAAG 58.973 52.381 0.00 0.00 32.86 4.01
2741 2980 1.357420 TGGCAAGATTCCCTTAGGCAA 59.643 47.619 0.00 0.00 36.41 4.52
2742 2981 0.998928 TGGCAAGATTCCCTTAGGCA 59.001 50.000 0.00 0.00 36.71 4.75
2743 2982 1.340991 TGTGGCAAGATTCCCTTAGGC 60.341 52.381 0.00 0.00 32.86 3.93
2744 2983 2.025887 AGTGTGGCAAGATTCCCTTAGG 60.026 50.000 0.00 0.00 32.86 2.69
2745 2984 3.356529 AGTGTGGCAAGATTCCCTTAG 57.643 47.619 0.00 0.00 32.86 2.18
2746 2985 3.806949 AAGTGTGGCAAGATTCCCTTA 57.193 42.857 0.00 0.00 32.86 2.69
2747 2986 2.683211 AAGTGTGGCAAGATTCCCTT 57.317 45.000 0.00 0.00 34.91 3.95
2748 2987 2.683211 AAAGTGTGGCAAGATTCCCT 57.317 45.000 0.00 0.00 0.00 4.20
2749 2988 3.181466 ACAAAAAGTGTGGCAAGATTCCC 60.181 43.478 0.00 0.00 39.72 3.97
2750 2989 4.058721 ACAAAAAGTGTGGCAAGATTCC 57.941 40.909 0.00 0.00 39.72 3.01
2763 3002 5.241506 CCCACATGTCATAGACACAAAAAGT 59.758 40.000 0.00 0.00 45.65 2.66
2764 3003 5.335897 CCCCACATGTCATAGACACAAAAAG 60.336 44.000 0.00 0.00 45.65 2.27
2765 3004 4.522405 CCCCACATGTCATAGACACAAAAA 59.478 41.667 0.00 0.00 45.65 1.94
2766 3005 4.078537 CCCCACATGTCATAGACACAAAA 58.921 43.478 0.00 0.00 45.65 2.44
2767 3006 3.073798 ACCCCACATGTCATAGACACAAA 59.926 43.478 0.00 0.00 45.65 2.83
2768 3007 2.642311 ACCCCACATGTCATAGACACAA 59.358 45.455 0.00 0.00 45.65 3.33
2769 3008 2.265367 ACCCCACATGTCATAGACACA 58.735 47.619 0.00 0.00 45.65 3.72
2770 3009 3.270877 GAACCCCACATGTCATAGACAC 58.729 50.000 0.00 0.00 45.65 3.67
2771 3010 2.909662 TGAACCCCACATGTCATAGACA 59.090 45.455 0.00 1.95 46.90 3.41
2772 3011 3.270877 GTGAACCCCACATGTCATAGAC 58.729 50.000 0.00 0.00 45.03 2.59
2773 3012 3.627395 GTGAACCCCACATGTCATAGA 57.373 47.619 0.00 0.00 45.03 1.98
2783 3022 2.489938 TTATGAGCAGTGAACCCCAC 57.510 50.000 0.00 0.00 46.03 4.61
2784 3023 3.517296 TTTTATGAGCAGTGAACCCCA 57.483 42.857 0.00 0.00 0.00 4.96
2803 3042 5.213891 CCACACCTAAGGCAAGAATTTTT 57.786 39.130 0.00 0.00 0.00 1.94
2804 3043 4.871933 CCACACCTAAGGCAAGAATTTT 57.128 40.909 0.00 0.00 0.00 1.82
2814 3053 1.906574 TGGTTCTAGCCACACCTAAGG 59.093 52.381 0.00 0.00 32.81 2.69
2815 3054 2.832129 TCTGGTTCTAGCCACACCTAAG 59.168 50.000 0.00 0.00 34.36 2.18
2816 3055 2.565834 GTCTGGTTCTAGCCACACCTAA 59.434 50.000 0.00 0.00 34.36 2.69
2817 3056 2.176889 GTCTGGTTCTAGCCACACCTA 58.823 52.381 0.00 0.00 34.36 3.08
2818 3057 0.977395 GTCTGGTTCTAGCCACACCT 59.023 55.000 0.00 0.00 34.36 4.00
2819 3058 0.685097 TGTCTGGTTCTAGCCACACC 59.315 55.000 0.00 0.00 34.36 4.16
2820 3059 1.608283 GGTGTCTGGTTCTAGCCACAC 60.608 57.143 0.60 0.00 35.81 3.82
2821 3060 0.685097 GGTGTCTGGTTCTAGCCACA 59.315 55.000 0.60 0.00 34.36 4.17
2822 3061 0.036294 GGGTGTCTGGTTCTAGCCAC 60.036 60.000 0.00 0.00 34.36 5.01
2823 3062 0.472925 TGGGTGTCTGGTTCTAGCCA 60.473 55.000 0.00 0.00 38.28 4.75
2824 3063 0.036294 GTGGGTGTCTGGTTCTAGCC 60.036 60.000 0.00 0.00 0.00 3.93
2825 3064 0.036294 GGTGGGTGTCTGGTTCTAGC 60.036 60.000 0.00 0.00 0.00 3.42
2826 3065 1.645710 AGGTGGGTGTCTGGTTCTAG 58.354 55.000 0.00 0.00 0.00 2.43
2827 3066 2.901839 GTTAGGTGGGTGTCTGGTTCTA 59.098 50.000 0.00 0.00 0.00 2.10
2828 3067 1.697982 GTTAGGTGGGTGTCTGGTTCT 59.302 52.381 0.00 0.00 0.00 3.01
2829 3068 1.697982 AGTTAGGTGGGTGTCTGGTTC 59.302 52.381 0.00 0.00 0.00 3.62
2830 3069 1.815757 AGTTAGGTGGGTGTCTGGTT 58.184 50.000 0.00 0.00 0.00 3.67
2831 3070 1.420138 CAAGTTAGGTGGGTGTCTGGT 59.580 52.381 0.00 0.00 0.00 4.00
2832 3071 1.271379 CCAAGTTAGGTGGGTGTCTGG 60.271 57.143 0.00 0.00 32.03 3.86
2833 3072 1.420138 ACCAAGTTAGGTGGGTGTCTG 59.580 52.381 0.00 0.00 41.30 3.51
2834 3073 1.697982 GACCAAGTTAGGTGGGTGTCT 59.302 52.381 2.23 0.00 43.38 3.41
2835 3074 1.418637 TGACCAAGTTAGGTGGGTGTC 59.581 52.381 2.23 0.00 43.38 3.67
2836 3075 1.513858 TGACCAAGTTAGGTGGGTGT 58.486 50.000 2.23 0.00 43.38 4.16
2837 3076 2.621526 GTTTGACCAAGTTAGGTGGGTG 59.378 50.000 2.23 0.00 43.38 4.61
2838 3077 2.512476 AGTTTGACCAAGTTAGGTGGGT 59.488 45.455 2.23 0.00 43.38 4.51
2839 3078 3.223674 AGTTTGACCAAGTTAGGTGGG 57.776 47.619 2.23 0.00 43.38 4.61
2840 3079 3.243401 GCAAGTTTGACCAAGTTAGGTGG 60.243 47.826 2.23 0.00 43.38 4.61
2841 3080 3.243401 GGCAAGTTTGACCAAGTTAGGTG 60.243 47.826 2.23 0.00 43.38 4.00
2842 3081 2.956333 GGCAAGTTTGACCAAGTTAGGT 59.044 45.455 0.00 0.00 46.82 3.08
2843 3082 3.222603 AGGCAAGTTTGACCAAGTTAGG 58.777 45.455 0.00 0.00 36.67 2.69
2844 3083 5.048713 CCTTAGGCAAGTTTGACCAAGTTAG 60.049 44.000 5.40 0.00 36.67 2.34
2845 3084 4.825085 CCTTAGGCAAGTTTGACCAAGTTA 59.175 41.667 5.40 0.00 36.67 2.24
2846 3085 3.636764 CCTTAGGCAAGTTTGACCAAGTT 59.363 43.478 5.40 0.00 36.67 2.66
2847 3086 3.222603 CCTTAGGCAAGTTTGACCAAGT 58.777 45.455 5.40 0.00 36.67 3.16
2848 3087 3.004734 CACCTTAGGCAAGTTTGACCAAG 59.995 47.826 0.00 0.00 36.67 3.61
2849 3088 2.955660 CACCTTAGGCAAGTTTGACCAA 59.044 45.455 0.00 0.00 36.67 3.67
2850 3089 2.173782 TCACCTTAGGCAAGTTTGACCA 59.826 45.455 0.00 0.00 36.67 4.02
2851 3090 2.814336 CTCACCTTAGGCAAGTTTGACC 59.186 50.000 0.00 0.00 36.67 4.02
2852 3091 2.814336 CCTCACCTTAGGCAAGTTTGAC 59.186 50.000 0.00 0.00 36.08 3.18
2853 3092 2.441750 ACCTCACCTTAGGCAAGTTTGA 59.558 45.455 0.00 0.00 40.62 2.69
2854 3093 2.554032 CACCTCACCTTAGGCAAGTTTG 59.446 50.000 0.00 0.00 40.62 2.93
2855 3094 2.174854 ACACCTCACCTTAGGCAAGTTT 59.825 45.455 0.00 0.00 40.62 2.66
2856 3095 1.774856 ACACCTCACCTTAGGCAAGTT 59.225 47.619 0.00 0.00 40.62 2.66
2857 3096 1.072331 CACACCTCACCTTAGGCAAGT 59.928 52.381 0.00 0.00 40.62 3.16
2858 3097 1.611673 CCACACCTCACCTTAGGCAAG 60.612 57.143 0.00 0.00 40.62 4.01
2859 3098 0.400213 CCACACCTCACCTTAGGCAA 59.600 55.000 0.00 0.00 40.62 4.52
2860 3099 2.066340 CCACACCTCACCTTAGGCA 58.934 57.895 0.00 0.00 40.62 4.75
2861 3100 1.377333 GCCACACCTCACCTTAGGC 60.377 63.158 0.00 0.00 40.62 3.93
2862 3101 0.036010 CTGCCACACCTCACCTTAGG 60.036 60.000 0.00 0.00 42.82 2.69
2863 3102 0.976641 TCTGCCACACCTCACCTTAG 59.023 55.000 0.00 0.00 0.00 2.18
2864 3103 0.976641 CTCTGCCACACCTCACCTTA 59.023 55.000 0.00 0.00 0.00 2.69
2865 3104 1.056700 ACTCTGCCACACCTCACCTT 61.057 55.000 0.00 0.00 0.00 3.50
2866 3105 1.460305 ACTCTGCCACACCTCACCT 60.460 57.895 0.00 0.00 0.00 4.00
2867 3106 1.302033 CACTCTGCCACACCTCACC 60.302 63.158 0.00 0.00 0.00 4.02
2868 3107 0.882042 CACACTCTGCCACACCTCAC 60.882 60.000 0.00 0.00 0.00 3.51
2869 3108 1.447217 CACACTCTGCCACACCTCA 59.553 57.895 0.00 0.00 0.00 3.86
2870 3109 1.302033 CCACACTCTGCCACACCTC 60.302 63.158 0.00 0.00 0.00 3.85
2871 3110 2.831770 CCACACTCTGCCACACCT 59.168 61.111 0.00 0.00 0.00 4.00
2872 3111 2.980233 GCCACACTCTGCCACACC 60.980 66.667 0.00 0.00 0.00 4.16
2873 3112 1.174712 ATTGCCACACTCTGCCACAC 61.175 55.000 0.00 0.00 0.00 3.82
2874 3113 0.399833 TATTGCCACACTCTGCCACA 59.600 50.000 0.00 0.00 0.00 4.17
2875 3114 1.402968 CATATTGCCACACTCTGCCAC 59.597 52.381 0.00 0.00 0.00 5.01
2876 3115 1.004628 ACATATTGCCACACTCTGCCA 59.995 47.619 0.00 0.00 0.00 4.92
2877 3116 1.402968 CACATATTGCCACACTCTGCC 59.597 52.381 0.00 0.00 0.00 4.85
2878 3117 1.402968 CCACATATTGCCACACTCTGC 59.597 52.381 0.00 0.00 0.00 4.26
2879 3118 1.402968 GCCACATATTGCCACACTCTG 59.597 52.381 0.00 0.00 0.00 3.35
2880 3119 1.283029 AGCCACATATTGCCACACTCT 59.717 47.619 0.00 0.00 0.00 3.24
2881 3120 1.402968 CAGCCACATATTGCCACACTC 59.597 52.381 0.00 0.00 0.00 3.51
2882 3121 1.466856 CAGCCACATATTGCCACACT 58.533 50.000 0.00 0.00 0.00 3.55
2883 3122 0.457035 CCAGCCACATATTGCCACAC 59.543 55.000 0.00 0.00 0.00 3.82
2884 3123 0.330941 TCCAGCCACATATTGCCACA 59.669 50.000 0.00 0.00 0.00 4.17
2885 3124 1.473258 TTCCAGCCACATATTGCCAC 58.527 50.000 0.00 0.00 0.00 5.01
2886 3125 1.824230 GTTTCCAGCCACATATTGCCA 59.176 47.619 0.00 0.00 0.00 4.92
2887 3126 1.136891 GGTTTCCAGCCACATATTGCC 59.863 52.381 0.00 0.00 0.00 4.52
2888 3127 1.824230 TGGTTTCCAGCCACATATTGC 59.176 47.619 0.00 0.00 0.00 3.56
2889 3128 4.244862 GTTTGGTTTCCAGCCACATATTG 58.755 43.478 0.00 0.00 35.46 1.90
2890 3129 3.900601 TGTTTGGTTTCCAGCCACATATT 59.099 39.130 0.00 0.00 35.46 1.28
2891 3130 3.505386 TGTTTGGTTTCCAGCCACATAT 58.495 40.909 0.00 0.00 35.46 1.78
2892 3131 2.890311 CTGTTTGGTTTCCAGCCACATA 59.110 45.455 0.00 0.00 35.46 2.29
2893 3132 1.688197 CTGTTTGGTTTCCAGCCACAT 59.312 47.619 0.00 0.00 35.46 3.21
2894 3133 1.110442 CTGTTTGGTTTCCAGCCACA 58.890 50.000 0.00 0.00 35.46 4.17
2895 3134 0.249447 GCTGTTTGGTTTCCAGCCAC 60.249 55.000 0.00 0.00 44.49 5.01
2896 3135 2.123409 GCTGTTTGGTTTCCAGCCA 58.877 52.632 0.00 0.00 44.49 4.75
2899 3138 0.469892 AGGGGCTGTTTGGTTTCCAG 60.470 55.000 0.00 0.00 33.81 3.86
2900 3139 0.031616 AAGGGGCTGTTTGGTTTCCA 60.032 50.000 0.00 0.00 0.00 3.53
2901 3140 2.003937 TAAGGGGCTGTTTGGTTTCC 57.996 50.000 0.00 0.00 0.00 3.13
2902 3141 3.576550 TGATTAAGGGGCTGTTTGGTTTC 59.423 43.478 0.00 0.00 0.00 2.78
2903 3142 3.323691 GTGATTAAGGGGCTGTTTGGTTT 59.676 43.478 0.00 0.00 0.00 3.27
2904 3143 2.897326 GTGATTAAGGGGCTGTTTGGTT 59.103 45.455 0.00 0.00 0.00 3.67
2905 3144 2.525368 GTGATTAAGGGGCTGTTTGGT 58.475 47.619 0.00 0.00 0.00 3.67
2906 3145 1.824852 GGTGATTAAGGGGCTGTTTGG 59.175 52.381 0.00 0.00 0.00 3.28
2907 3146 2.231235 GTGGTGATTAAGGGGCTGTTTG 59.769 50.000 0.00 0.00 0.00 2.93
2908 3147 2.158385 TGTGGTGATTAAGGGGCTGTTT 60.158 45.455 0.00 0.00 0.00 2.83
2909 3148 1.427368 TGTGGTGATTAAGGGGCTGTT 59.573 47.619 0.00 0.00 0.00 3.16
2910 3149 1.004745 CTGTGGTGATTAAGGGGCTGT 59.995 52.381 0.00 0.00 0.00 4.40
2911 3150 1.004745 ACTGTGGTGATTAAGGGGCTG 59.995 52.381 0.00 0.00 0.00 4.85
2912 3151 1.004745 CACTGTGGTGATTAAGGGGCT 59.995 52.381 0.00 0.00 45.61 5.19
2913 3152 1.463674 CACTGTGGTGATTAAGGGGC 58.536 55.000 0.00 0.00 45.61 5.80
2914 3153 1.271871 TGCACTGTGGTGATTAAGGGG 60.272 52.381 10.21 0.00 45.61 4.79
2915 3154 1.812571 GTGCACTGTGGTGATTAAGGG 59.187 52.381 10.32 0.00 45.61 3.95
2916 3155 1.812571 GGTGCACTGTGGTGATTAAGG 59.187 52.381 17.98 0.00 45.61 2.69
2917 3156 2.503331 TGGTGCACTGTGGTGATTAAG 58.497 47.619 17.98 0.00 45.61 1.85
2918 3157 2.647683 TGGTGCACTGTGGTGATTAA 57.352 45.000 17.98 0.00 45.61 1.40
2919 3158 2.503331 CTTGGTGCACTGTGGTGATTA 58.497 47.619 17.98 0.00 45.61 1.75
2920 3159 1.321474 CTTGGTGCACTGTGGTGATT 58.679 50.000 17.98 0.00 45.61 2.57
3017 3256 1.278238 GACCTTCAGTCCGTAATGCG 58.722 55.000 0.00 0.00 39.84 4.73
3043 3282 2.227968 GACTGACCACAATCGCACGC 62.228 60.000 0.00 0.00 0.00 5.34
3069 3309 2.462456 TGCACAAGCTCTACCAGAAG 57.538 50.000 0.00 0.00 42.74 2.85
3145 3385 4.261801 CGAGGAGGTCATGTGGTAAAAAT 58.738 43.478 0.00 0.00 0.00 1.82
3842 4103 4.161565 ACAATAGAGTTAGAATGGCCGACA 59.838 41.667 0.00 0.00 0.00 4.35
4189 4451 2.224606 TCGTCCCCATCTCACGTATAC 58.775 52.381 0.00 0.00 35.05 1.47
4198 4460 1.765314 CAATCTTCCTCGTCCCCATCT 59.235 52.381 0.00 0.00 0.00 2.90
4300 4562 8.978539 TCTGCAATCGTATCAAACTGAATATAC 58.021 33.333 0.00 0.00 0.00 1.47
4339 4601 6.650427 AAGTTTGGTAAGACCCAATTTCTC 57.350 37.500 0.00 0.00 43.77 2.87
4341 4603 7.718525 TGTTAAGTTTGGTAAGACCCAATTTC 58.281 34.615 0.00 0.00 43.77 2.17
4554 4877 9.772973 GTACTCCAAAATAAATTCCCTTTTGTT 57.227 29.630 14.12 5.87 37.89 2.83
4773 5096 2.910688 CCGTTAGGGTGACTGCATAT 57.089 50.000 0.00 0.00 0.00 1.78
4789 5112 1.597027 GTGCAGTACCAGCAACCGT 60.597 57.895 11.67 0.00 44.64 4.83
4837 5160 2.478539 GCTCTTTCCAATCACGCCATTC 60.479 50.000 0.00 0.00 0.00 2.67
4874 5197 4.262335 CGGGTACAGTAAACCAGTCTTTCT 60.262 45.833 0.00 0.00 38.87 2.52
4976 5299 4.278419 CCTTGCTAACTTTACCAAGTGCTT 59.722 41.667 0.00 0.00 42.89 3.91
5079 5402 3.353836 CCGACACAACGGCTTGGG 61.354 66.667 0.00 0.00 46.20 4.12
5194 5536 5.428496 CCATTGGCATTGTACAGACATAG 57.572 43.478 8.42 0.00 34.86 2.23
5229 5571 7.510675 TTCTCCCATGTTTATTCTTCCTAGT 57.489 36.000 0.00 0.00 0.00 2.57
5244 5586 5.454187 CCATTTTGGATTGGATTCTCCCATG 60.454 44.000 0.00 0.00 40.96 3.66
5365 5708 7.959718 ACACACTAAAACGTGTCTATATACG 57.040 36.000 0.00 0.00 45.74 3.06
5391 5734 2.105821 ACAGACCGAAATGAGGGAACAA 59.894 45.455 0.00 0.00 0.00 2.83
5397 5740 7.207383 TGTATAACATACAGACCGAAATGAGG 58.793 38.462 0.00 0.00 0.00 3.86
5492 5843 6.503944 TCCCTATTGAAGTCTCTAAAGAGGT 58.496 40.000 7.14 0.00 42.30 3.85
5505 5856 6.936279 ACATCCGTATGTATCCCTATTGAAG 58.064 40.000 0.00 0.00 44.66 3.02
5596 5952 5.891551 TCCCTTCATTCTTAAATGTAAGCCC 59.108 40.000 0.00 0.00 42.46 5.19
5603 5959 6.038714 GCTACCACTCCCTTCATTCTTAAATG 59.961 42.308 0.00 0.00 43.10 2.32
5609 5965 2.551270 TGCTACCACTCCCTTCATTCT 58.449 47.619 0.00 0.00 0.00 2.40
5613 5969 2.054799 ACTTTGCTACCACTCCCTTCA 58.945 47.619 0.00 0.00 0.00 3.02
5615 5971 1.774856 ACACTTTGCTACCACTCCCTT 59.225 47.619 0.00 0.00 0.00 3.95
5632 5988 7.534918 GCATCCAAGAAATAAAATGCAAAACAC 59.465 33.333 0.00 0.00 39.36 3.32
5633 5989 7.228108 TGCATCCAAGAAATAAAATGCAAAACA 59.772 29.630 5.43 0.00 44.50 2.83
5646 6002 6.072649 TCATGTCCATATGCATCCAAGAAAT 58.927 36.000 0.19 0.00 0.00 2.17
5651 6007 6.734502 AAAATCATGTCCATATGCATCCAA 57.265 33.333 0.19 0.00 0.00 3.53
5740 6096 5.975988 ACATCTTAAGAGGGGCATTCTTA 57.024 39.130 20.36 6.01 36.38 2.10
5789 6145 4.929211 GTGGTTGTTTCATTTATGAAGGGC 59.071 41.667 5.41 2.39 46.34 5.19
5833 6189 1.473965 GCTGCTTGATCCATCCGAGAA 60.474 52.381 0.00 0.00 0.00 2.87
5834 6190 0.105593 GCTGCTTGATCCATCCGAGA 59.894 55.000 0.00 0.00 0.00 4.04
5872 6228 7.508687 TCCGTGTATACTGTATACTGACCTTA 58.491 38.462 28.56 11.75 41.21 2.69
5878 6234 7.012138 ACAGAGTTCCGTGTATACTGTATACTG 59.988 40.741 28.56 22.36 41.21 2.74
5879 6235 7.052873 ACAGAGTTCCGTGTATACTGTATACT 58.947 38.462 28.56 15.19 41.21 2.12
5880 6236 7.256756 ACAGAGTTCCGTGTATACTGTATAC 57.743 40.000 24.40 24.40 41.06 1.47
5881 6237 6.201615 CGACAGAGTTCCGTGTATACTGTATA 59.798 42.308 4.17 3.44 37.27 1.47
5882 6238 5.007430 CGACAGAGTTCCGTGTATACTGTAT 59.993 44.000 5.53 5.53 37.27 2.29
5883 6239 4.330894 CGACAGAGTTCCGTGTATACTGTA 59.669 45.833 4.17 0.00 37.27 2.74
5884 6240 3.126514 CGACAGAGTTCCGTGTATACTGT 59.873 47.826 4.17 0.00 39.32 3.55
5910 6266 6.158598 GCATTACCAAAAACATGTCATCACT 58.841 36.000 0.00 0.00 0.00 3.41
5917 6273 3.007831 CCTGGGCATTACCAAAAACATGT 59.992 43.478 0.00 0.00 40.68 3.21



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.