Multiple sequence alignment - TraesCS2B01G296200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G296200 chr2B 100.000 3346 0 0 1 3346 413081794 413078449 0.000000e+00 6180.0
1 TraesCS2B01G296200 chr2B 96.541 318 8 1 2802 3119 412781553 412781867 1.060000e-144 523.0
2 TraesCS2B01G296200 chr2B 86.364 110 13 1 529 636 42980287 42980178 5.860000e-23 119.0
3 TraesCS2B01G296200 chr2B 100.000 33 0 0 668 700 24696034 24696002 1.000000e-05 62.1
4 TraesCS2B01G296200 chr2A 91.749 1515 71 26 1307 2792 461495861 461494372 0.000000e+00 2056.0
5 TraesCS2B01G296200 chr2A 94.776 536 16 4 700 1232 461496796 461496270 0.000000e+00 824.0
6 TraesCS2B01G296200 chr2A 92.145 331 22 3 2794 3123 373501570 373501897 6.540000e-127 464.0
7 TraesCS2B01G296200 chr2A 93.354 316 17 3 2805 3119 672789534 672789222 6.540000e-127 464.0
8 TraesCS2B01G296200 chr2A 83.235 507 72 10 14 511 461498200 461497698 1.420000e-123 453.0
9 TraesCS2B01G296200 chr2A 87.255 102 13 0 529 630 54849804 54849703 2.110000e-22 117.0
10 TraesCS2B01G296200 chr2A 94.521 73 4 0 3191 3263 461492216 461492144 2.730000e-21 113.0
11 TraesCS2B01G296200 chr2A 89.474 76 4 3 3268 3341 461491981 461491908 3.550000e-15 93.5
12 TraesCS2B01G296200 chr2A 94.545 55 3 0 2024 2078 461495176 461495122 5.950000e-13 86.1
13 TraesCS2B01G296200 chr2D 90.785 1324 79 22 743 2044 347815084 347813782 0.000000e+00 1729.0
14 TraesCS2B01G296200 chr2D 88.776 392 38 5 2210 2597 347813693 347813304 3.020000e-130 475.0
15 TraesCS2B01G296200 chr1A 92.923 325 19 3 2799 3122 496849701 496849380 1.410000e-128 470.0
16 TraesCS2B01G296200 chr1A 91.471 340 24 3 2784 3122 496851242 496850907 2.350000e-126 462.0
17 TraesCS2B01G296200 chr5A 91.867 332 22 4 2801 3131 4982457 4982784 3.040000e-125 459.0
18 TraesCS2B01G296200 chr7A 91.592 333 23 4 2796 3127 380231539 380231867 3.940000e-124 455.0
19 TraesCS2B01G296200 chr7A 79.562 137 12 4 585 705 490968235 490968371 2.140000e-12 84.2
20 TraesCS2B01G296200 chr4A 91.818 330 22 4 2794 3122 601258634 601258309 3.940000e-124 455.0
21 TraesCS2B01G296200 chr7D 90.882 340 26 4 2796 3134 281426786 281427121 5.090000e-123 451.0
22 TraesCS2B01G296200 chr3D 90.230 174 17 0 528 701 368340789 368340616 9.340000e-56 228.0
23 TraesCS2B01G296200 chr1B 92.949 156 9 2 527 681 540365633 540365479 3.360000e-55 226.0
24 TraesCS2B01G296200 chr1B 93.377 151 9 1 532 681 539455772 539455922 4.350000e-54 222.0
25 TraesCS2B01G296200 chr1B 92.763 152 11 0 530 681 197401894 197401743 1.560000e-53 220.0
26 TraesCS2B01G296200 chr5B 93.377 151 10 0 531 681 307688595 307688445 1.210000e-54 224.0
27 TraesCS2B01G296200 chr5B 92.857 154 10 1 529 682 562789776 562789928 4.350000e-54 222.0
28 TraesCS2B01G296200 chr7B 92.763 152 11 0 530 681 234054676 234054525 1.560000e-53 220.0
29 TraesCS2B01G296200 chr6A 92.763 152 11 0 530 681 162993932 162993781 1.560000e-53 220.0
30 TraesCS2B01G296200 chr1D 88.889 171 18 1 532 701 462669093 462669263 3.380000e-50 209.0
31 TraesCS2B01G296200 chr3B 87.209 86 11 0 529 614 528652431 528652346 7.640000e-17 99.0
32 TraesCS2B01G296200 chr3B 100.000 36 0 0 668 703 102968209 102968244 2.150000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G296200 chr2B 413078449 413081794 3345 True 6180.000000 6180 100.000000 1 3346 1 chr2B.!!$R3 3345
1 TraesCS2B01G296200 chr2A 461491908 461498200 6292 True 604.266667 2056 91.383333 14 3341 6 chr2A.!!$R3 3327
2 TraesCS2B01G296200 chr2D 347813304 347815084 1780 True 1102.000000 1729 89.780500 743 2597 2 chr2D.!!$R1 1854
3 TraesCS2B01G296200 chr1A 496849380 496851242 1862 True 466.000000 470 92.197000 2784 3122 2 chr1A.!!$R1 338

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
534 1428 0.032267 ATAGCCGACGCCTTAAGAGC 59.968 55.0 3.36 4.98 34.57 4.09 F
538 1432 0.179111 CCGACGCCTTAAGAGCATGA 60.179 55.0 3.36 0.00 0.00 3.07 F
1239 2136 0.537188 CAAGATGTACGTGCCTCCCT 59.463 55.0 0.00 0.00 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1726 2968 0.166814 GCGAACAACTAGGCAAGCAG 59.833 55.0 0.0 0.0 0.0 4.24 R
1727 2969 0.250295 AGCGAACAACTAGGCAAGCA 60.250 50.0 0.0 0.0 0.0 3.91 R
3100 6869 0.104487 TACAGCGTGTTTGGTTCGGA 59.896 50.0 0.0 0.0 0.0 4.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.365408 AAACGGAAGGAGTAGAAGCG 57.635 50.000 0.00 0.00 0.00 4.68
69 73 3.385193 AATTGTGCCTTTCCCTTTTCG 57.615 42.857 0.00 0.00 0.00 3.46
70 74 2.060050 TTGTGCCTTTCCCTTTTCGA 57.940 45.000 0.00 0.00 0.00 3.71
78 82 3.181480 CCTTTCCCTTTTCGAAAAGCACA 60.181 43.478 34.89 21.79 43.07 4.57
79 83 4.429108 CTTTCCCTTTTCGAAAAGCACAA 58.571 39.130 34.89 25.08 43.07 3.33
111 115 0.962489 ACGAGAGTACAAGCTGTGCT 59.038 50.000 6.61 6.61 45.91 4.40
124 128 4.361451 AGCTGTGCTTTTTCATTATCCG 57.639 40.909 0.00 0.00 33.89 4.18
125 129 3.129287 AGCTGTGCTTTTTCATTATCCGG 59.871 43.478 0.00 0.00 33.89 5.14
130 134 4.157840 GTGCTTTTTCATTATCCGGGAAGT 59.842 41.667 0.00 0.00 0.00 3.01
133 137 5.503520 GCTTTTTCATTATCCGGGAAGTACG 60.504 44.000 0.00 0.00 0.00 3.67
221 226 3.564235 GCAAAGTTGTGCATCTCATGA 57.436 42.857 0.00 0.00 44.29 3.07
231 236 2.159296 TGCATCTCATGAAAGCACATGC 60.159 45.455 11.12 10.67 44.79 4.06
248 253 3.801594 ACATGCTACGTTTTTGCCTTTTG 59.198 39.130 0.00 0.00 0.00 2.44
251 256 1.784283 CTACGTTTTTGCCTTTTGCCG 59.216 47.619 0.00 0.00 40.16 5.69
255 260 1.329292 GTTTTTGCCTTTTGCCGGAAC 59.671 47.619 5.05 0.00 40.16 3.62
258 263 1.243902 TTGCCTTTTGCCGGAACTAG 58.756 50.000 5.05 0.00 40.16 2.57
261 266 1.199327 GCCTTTTGCCGGAACTAGAAC 59.801 52.381 5.05 0.00 0.00 3.01
272 277 3.246619 GGAACTAGAACAGTGCTTCTCG 58.753 50.000 10.12 7.82 37.63 4.04
273 278 2.355717 ACTAGAACAGTGCTTCTCGC 57.644 50.000 10.12 0.00 35.62 5.03
333 340 7.285783 GTTTTCCTTAAAACGAGCAAAAACT 57.714 32.000 0.00 0.00 43.58 2.66
334 341 6.879188 TTTCCTTAAAACGAGCAAAAACTG 57.121 33.333 0.00 0.00 0.00 3.16
335 342 5.821516 TCCTTAAAACGAGCAAAAACTGA 57.178 34.783 0.00 0.00 0.00 3.41
336 343 6.197364 TCCTTAAAACGAGCAAAAACTGAA 57.803 33.333 0.00 0.00 0.00 3.02
337 344 6.622549 TCCTTAAAACGAGCAAAAACTGAAA 58.377 32.000 0.00 0.00 0.00 2.69
338 345 7.091443 TCCTTAAAACGAGCAAAAACTGAAAA 58.909 30.769 0.00 0.00 0.00 2.29
339 346 7.762159 TCCTTAAAACGAGCAAAAACTGAAAAT 59.238 29.630 0.00 0.00 0.00 1.82
340 347 8.387354 CCTTAAAACGAGCAAAAACTGAAAATT 58.613 29.630 0.00 0.00 0.00 1.82
341 348 9.408731 CTTAAAACGAGCAAAAACTGAAAATTC 57.591 29.630 0.00 0.00 0.00 2.17
370 377 6.563222 TTACCCATCTAAAACCTGAAAACG 57.437 37.500 0.00 0.00 0.00 3.60
371 378 4.466827 ACCCATCTAAAACCTGAAAACGT 58.533 39.130 0.00 0.00 0.00 3.99
388 395 9.777843 CTGAAAACGTATGCAGAAAAATAAAAC 57.222 29.630 5.77 0.00 0.00 2.43
400 407 8.957028 GCAGAAAAATAAAACAAAGCAAAATCC 58.043 29.630 0.00 0.00 0.00 3.01
427 434 3.684355 CGTCGAAAATACGCGATGG 57.316 52.632 15.93 0.00 39.24 3.51
428 435 0.381428 CGTCGAAAATACGCGATGGC 60.381 55.000 15.93 0.00 39.24 4.40
443 450 2.535984 CGATGGCGACTAGACAAATCAC 59.464 50.000 0.00 0.00 44.01 3.06
446 453 4.794278 TGGCGACTAGACAAATCACTTA 57.206 40.909 0.00 0.00 32.75 2.24
449 456 4.031426 GGCGACTAGACAAATCACTTAACG 59.969 45.833 0.00 0.00 0.00 3.18
451 458 4.258899 CGACTAGACAAATCACTTAACGCG 60.259 45.833 3.53 3.53 0.00 6.01
457 464 1.269166 AATCACTTAACGCGCTCTCG 58.731 50.000 5.73 0.00 39.07 4.04
473 480 3.718815 CTCTCGAGCCTAAATAACCACC 58.281 50.000 7.81 0.00 0.00 4.61
475 482 2.169769 CTCGAGCCTAAATAACCACCCA 59.830 50.000 0.00 0.00 0.00 4.51
487 494 4.850193 CACCCATGTGGAAGCCTT 57.150 55.556 0.00 0.00 38.90 4.35
497 504 4.745116 GAAGCCTTCCAAGGGACC 57.255 61.111 7.48 0.00 46.56 4.46
502 512 0.392595 GCCTTCCAAGGGACCGTTAG 60.393 60.000 7.48 0.00 46.56 2.34
511 521 4.383173 CAAGGGACCGTTAGTTAGTTGTT 58.617 43.478 0.00 0.00 0.00 2.83
512 522 4.694760 AGGGACCGTTAGTTAGTTGTTT 57.305 40.909 0.00 0.00 0.00 2.83
514 524 4.101430 AGGGACCGTTAGTTAGTTGTTTCA 59.899 41.667 0.00 0.00 0.00 2.69
522 1416 6.089820 CGTTAGTTAGTTGTTTCAATAGCCGA 59.910 38.462 0.00 0.00 0.00 5.54
528 1422 1.084289 GTTTCAATAGCCGACGCCTT 58.916 50.000 0.00 0.00 34.57 4.35
529 1423 2.273557 GTTTCAATAGCCGACGCCTTA 58.726 47.619 0.00 0.00 34.57 2.69
530 1424 2.674357 GTTTCAATAGCCGACGCCTTAA 59.326 45.455 0.00 0.00 34.57 1.85
531 1425 2.218953 TCAATAGCCGACGCCTTAAG 57.781 50.000 0.00 0.00 34.57 1.85
532 1426 1.752498 TCAATAGCCGACGCCTTAAGA 59.248 47.619 3.36 0.00 34.57 2.10
533 1427 2.128035 CAATAGCCGACGCCTTAAGAG 58.872 52.381 3.36 0.00 34.57 2.85
534 1428 0.032267 ATAGCCGACGCCTTAAGAGC 59.968 55.000 3.36 4.98 34.57 4.09
535 1429 1.317431 TAGCCGACGCCTTAAGAGCA 61.317 55.000 3.36 0.00 34.57 4.26
536 1430 1.521681 GCCGACGCCTTAAGAGCAT 60.522 57.895 3.36 0.00 0.00 3.79
537 1431 1.766143 GCCGACGCCTTAAGAGCATG 61.766 60.000 3.36 0.00 0.00 4.06
538 1432 0.179111 CCGACGCCTTAAGAGCATGA 60.179 55.000 3.36 0.00 0.00 3.07
539 1433 1.539065 CCGACGCCTTAAGAGCATGAT 60.539 52.381 3.36 0.00 0.00 2.45
540 1434 2.205074 CGACGCCTTAAGAGCATGATT 58.795 47.619 3.36 0.00 0.00 2.57
541 1435 2.033407 CGACGCCTTAAGAGCATGATTG 60.033 50.000 3.36 0.00 0.00 2.67
542 1436 2.289002 GACGCCTTAAGAGCATGATTGG 59.711 50.000 3.36 0.00 0.00 3.16
543 1437 2.292267 CGCCTTAAGAGCATGATTGGT 58.708 47.619 3.36 0.00 35.95 3.67
544 1438 2.684881 CGCCTTAAGAGCATGATTGGTT 59.315 45.455 3.36 0.00 32.62 3.67
545 1439 3.488047 CGCCTTAAGAGCATGATTGGTTG 60.488 47.826 3.36 0.00 32.62 3.77
546 1440 3.181483 GCCTTAAGAGCATGATTGGTTGG 60.181 47.826 3.36 0.00 32.62 3.77
547 1441 4.272489 CCTTAAGAGCATGATTGGTTGGA 58.728 43.478 3.36 0.00 32.62 3.53
548 1442 4.891756 CCTTAAGAGCATGATTGGTTGGAT 59.108 41.667 3.36 0.00 32.62 3.41
549 1443 5.221185 CCTTAAGAGCATGATTGGTTGGATG 60.221 44.000 3.36 0.00 32.62 3.51
550 1444 2.029623 AGAGCATGATTGGTTGGATGC 58.970 47.619 0.00 0.00 41.29 3.91
551 1445 1.068127 GAGCATGATTGGTTGGATGCC 59.932 52.381 0.00 0.00 41.81 4.40
552 1446 0.825410 GCATGATTGGTTGGATGCCA 59.175 50.000 0.00 0.00 36.08 4.92
554 1448 2.354906 GCATGATTGGTTGGATGCCAAA 60.355 45.455 0.00 0.00 45.73 3.28
555 1449 3.869140 GCATGATTGGTTGGATGCCAAAA 60.869 43.478 0.00 0.00 45.73 2.44
556 1450 3.681593 TGATTGGTTGGATGCCAAAAG 57.318 42.857 0.00 0.00 45.73 2.27
557 1451 2.971330 TGATTGGTTGGATGCCAAAAGT 59.029 40.909 0.00 0.00 45.73 2.66
558 1452 3.390639 TGATTGGTTGGATGCCAAAAGTT 59.609 39.130 0.00 0.00 45.73 2.66
559 1453 2.906691 TGGTTGGATGCCAAAAGTTG 57.093 45.000 0.00 0.00 45.73 3.16
574 1468 7.007313 CCAAAAGTTGGCATGCTAATATTTG 57.993 36.000 29.58 29.58 45.17 2.32
575 1469 6.037391 CCAAAAGTTGGCATGCTAATATTTGG 59.963 38.462 34.70 34.70 45.17 3.28
576 1470 4.326504 AGTTGGCATGCTAATATTTGGC 57.673 40.909 20.04 5.04 37.69 4.52
607 1501 7.944061 CCAAATATTGGCTAGTGATTGATTGA 58.056 34.615 0.00 0.00 45.17 2.57
608 1502 7.864379 CCAAATATTGGCTAGTGATTGATTGAC 59.136 37.037 0.00 0.00 45.17 3.18
609 1503 8.627403 CAAATATTGGCTAGTGATTGATTGACT 58.373 33.333 0.00 0.00 0.00 3.41
610 1504 9.851686 AAATATTGGCTAGTGATTGATTGACTA 57.148 29.630 0.00 0.00 0.00 2.59
611 1505 8.839310 ATATTGGCTAGTGATTGATTGACTAC 57.161 34.615 0.00 0.00 0.00 2.73
612 1506 5.023533 TGGCTAGTGATTGATTGACTACC 57.976 43.478 0.00 0.00 0.00 3.18
613 1507 4.469586 TGGCTAGTGATTGATTGACTACCA 59.530 41.667 0.00 0.00 0.00 3.25
614 1508 5.045942 TGGCTAGTGATTGATTGACTACCAA 60.046 40.000 0.00 0.00 39.41 3.67
616 1510 6.543831 GGCTAGTGATTGATTGACTACCAATT 59.456 38.462 0.00 0.00 45.00 2.32
617 1511 7.067494 GGCTAGTGATTGATTGACTACCAATTT 59.933 37.037 0.00 0.00 45.00 1.82
618 1512 8.462016 GCTAGTGATTGATTGACTACCAATTTT 58.538 33.333 0.00 0.00 45.00 1.82
621 1515 9.082313 AGTGATTGATTGACTACCAATTTTTCT 57.918 29.630 0.00 0.00 45.00 2.52
622 1516 9.696917 GTGATTGATTGACTACCAATTTTTCTT 57.303 29.630 0.00 0.00 45.00 2.52
623 1517 9.912634 TGATTGATTGACTACCAATTTTTCTTC 57.087 29.630 0.00 0.00 45.00 2.87
624 1518 9.358872 GATTGATTGACTACCAATTTTTCTTCC 57.641 33.333 0.00 0.00 45.00 3.46
625 1519 7.227049 TGATTGACTACCAATTTTTCTTCCC 57.773 36.000 0.00 0.00 45.00 3.97
626 1520 6.780031 TGATTGACTACCAATTTTTCTTCCCA 59.220 34.615 0.00 0.00 45.00 4.37
627 1521 7.288852 TGATTGACTACCAATTTTTCTTCCCAA 59.711 33.333 0.00 0.00 45.00 4.12
628 1522 7.610580 TTGACTACCAATTTTTCTTCCCAAT 57.389 32.000 0.00 0.00 0.00 3.16
629 1523 7.227049 TGACTACCAATTTTTCTTCCCAATC 57.773 36.000 0.00 0.00 0.00 2.67
630 1524 6.780031 TGACTACCAATTTTTCTTCCCAATCA 59.220 34.615 0.00 0.00 0.00 2.57
631 1525 6.993079 ACTACCAATTTTTCTTCCCAATCAC 58.007 36.000 0.00 0.00 0.00 3.06
632 1526 5.885449 ACCAATTTTTCTTCCCAATCACA 57.115 34.783 0.00 0.00 0.00 3.58
633 1527 5.610398 ACCAATTTTTCTTCCCAATCACAC 58.390 37.500 0.00 0.00 0.00 3.82
634 1528 5.130145 ACCAATTTTTCTTCCCAATCACACA 59.870 36.000 0.00 0.00 0.00 3.72
635 1529 6.054295 CCAATTTTTCTTCCCAATCACACAA 58.946 36.000 0.00 0.00 0.00 3.33
636 1530 6.541641 CCAATTTTTCTTCCCAATCACACAAA 59.458 34.615 0.00 0.00 0.00 2.83
637 1531 7.066766 CCAATTTTTCTTCCCAATCACACAAAA 59.933 33.333 0.00 0.00 0.00 2.44
638 1532 8.457261 CAATTTTTCTTCCCAATCACACAAAAA 58.543 29.630 0.00 0.00 0.00 1.94
639 1533 7.608308 TTTTTCTTCCCAATCACACAAAAAG 57.392 32.000 0.00 0.00 0.00 2.27
640 1534 5.930837 TTCTTCCCAATCACACAAAAAGT 57.069 34.783 0.00 0.00 0.00 2.66
641 1535 5.930837 TCTTCCCAATCACACAAAAAGTT 57.069 34.783 0.00 0.00 0.00 2.66
642 1536 5.659463 TCTTCCCAATCACACAAAAAGTTG 58.341 37.500 0.00 0.00 40.84 3.16
643 1537 3.791245 TCCCAATCACACAAAAAGTTGC 58.209 40.909 0.00 0.00 38.39 4.17
644 1538 2.871633 CCCAATCACACAAAAAGTTGCC 59.128 45.455 0.00 0.00 38.39 4.52
645 1539 3.529533 CCAATCACACAAAAAGTTGCCA 58.470 40.909 0.00 0.00 38.39 4.92
646 1540 3.937706 CCAATCACACAAAAAGTTGCCAA 59.062 39.130 0.00 0.00 38.39 4.52
647 1541 4.201802 CCAATCACACAAAAAGTTGCCAAC 60.202 41.667 0.00 0.00 38.39 3.77
648 1542 3.667497 TCACACAAAAAGTTGCCAACA 57.333 38.095 10.69 0.00 38.39 3.33
649 1543 4.199432 TCACACAAAAAGTTGCCAACAT 57.801 36.364 10.69 0.00 38.39 2.71
650 1544 4.573900 TCACACAAAAAGTTGCCAACATT 58.426 34.783 10.69 0.60 38.39 2.71
651 1545 4.999950 TCACACAAAAAGTTGCCAACATTT 59.000 33.333 10.69 7.67 38.39 2.32
652 1546 5.087397 CACACAAAAAGTTGCCAACATTTG 58.913 37.500 24.88 24.88 41.84 2.32
665 1559 5.754543 CCAACATTTGGCAACTTTTGATT 57.245 34.783 15.45 0.00 45.17 2.57
666 1560 6.134040 CCAACATTTGGCAACTTTTGATTT 57.866 33.333 15.45 0.00 45.17 2.17
667 1561 6.562518 CCAACATTTGGCAACTTTTGATTTT 58.437 32.000 15.45 0.00 45.17 1.82
668 1562 6.472808 CCAACATTTGGCAACTTTTGATTTTG 59.527 34.615 15.45 8.13 45.17 2.44
669 1563 5.580661 ACATTTGGCAACTTTTGATTTTGC 58.419 33.333 0.00 0.00 44.05 3.68
676 1570 5.580661 GCAACTTTTGATTTTGCCAAATGT 58.419 33.333 0.00 0.00 40.94 2.71
677 1571 6.035217 GCAACTTTTGATTTTGCCAAATGTT 58.965 32.000 0.00 5.81 44.92 2.71
689 1583 3.123157 CCAAATGTTGGCATCAAACCA 57.877 42.857 1.83 0.00 45.17 3.67
690 1584 3.474600 CCAAATGTTGGCATCAAACCAA 58.525 40.909 1.83 0.00 45.17 3.67
697 1591 4.822685 TTGGCATCAAACCAATTATGCT 57.177 36.364 8.17 0.00 42.23 3.79
698 1592 4.389890 TGGCATCAAACCAATTATGCTC 57.610 40.909 8.17 1.21 43.33 4.26
728 1622 3.005472 CGAATAGGAATCGGGCTGAAGTA 59.995 47.826 0.00 0.00 36.68 2.24
741 1635 2.436173 GCTGAAGTACTTATGGGCCTCT 59.564 50.000 8.42 0.00 0.00 3.69
755 1649 2.480244 GGGCCTCTGAAATGCGATTTTC 60.480 50.000 0.84 0.00 36.38 2.29
792 1689 2.696759 GCGCGTGGGCCAATAGTTT 61.697 57.895 8.40 0.00 35.02 2.66
793 1690 1.880186 CGCGTGGGCCAATAGTTTT 59.120 52.632 8.40 0.00 35.02 2.43
908 1805 3.787785 CCATATATATAACCCGCACGCA 58.212 45.455 0.00 0.00 0.00 5.24
909 1806 3.554324 CCATATATATAACCCGCACGCAC 59.446 47.826 0.00 0.00 0.00 5.34
950 1847 1.561542 AGCGTCTCATTTTCATCCCCT 59.438 47.619 0.00 0.00 0.00 4.79
1021 1918 1.741706 TGGGTAAGACGCTAACTCTCG 59.258 52.381 0.00 0.00 31.67 4.04
1046 1943 4.931601 TCGTCTCTGATTGATTTGGTTCTG 59.068 41.667 0.00 0.00 0.00 3.02
1133 2030 1.377333 GGGGAAGAACAAGGCGGAG 60.377 63.158 0.00 0.00 0.00 4.63
1239 2136 0.537188 CAAGATGTACGTGCCTCCCT 59.463 55.000 0.00 0.00 0.00 4.20
1241 2138 1.144057 GATGTACGTGCCTCCCTGG 59.856 63.158 0.00 0.00 39.35 4.45
1259 2156 4.179599 CCTCCTCCCCTCCCCCTC 62.180 77.778 0.00 0.00 0.00 4.30
1273 2170 1.550976 CCCCCTCATAGAGTAATCCGC 59.449 57.143 0.00 0.00 0.00 5.54
1516 2748 0.966179 TCCTTCTACTTGTGCTGCGA 59.034 50.000 0.00 0.00 0.00 5.10
1525 2765 3.403038 ACTTGTGCTGCGATTCTTTACT 58.597 40.909 0.00 0.00 0.00 2.24
1591 2831 7.757097 TCTTTTCGTTAGATGCTGAGATTAC 57.243 36.000 0.00 0.00 0.00 1.89
1607 2847 8.139989 GCTGAGATTACTAAAATTGATGCCATT 58.860 33.333 0.00 0.00 0.00 3.16
1726 2968 3.930229 TGACATGGCACTGTATTTCGTAC 59.070 43.478 0.00 0.00 0.00 3.67
1727 2969 4.181578 GACATGGCACTGTATTTCGTACT 58.818 43.478 0.00 0.00 34.27 2.73
1735 2977 3.262420 CTGTATTTCGTACTGCTTGCCT 58.738 45.455 0.00 0.00 34.27 4.75
1739 2981 3.396260 TTTCGTACTGCTTGCCTAGTT 57.604 42.857 0.00 0.00 0.00 2.24
1754 2997 2.289195 CCTAGTTGTTCGCTGGTGGTTA 60.289 50.000 0.00 0.00 0.00 2.85
1810 3054 4.637483 TTAGCATTGTAAGGATTGCTGC 57.363 40.909 6.53 0.00 44.65 5.25
1834 3078 5.163683 CGAATCTCTAGGTTGGAGAACGTTA 60.164 44.000 0.00 0.00 42.16 3.18
1854 3098 5.343058 CGTTATTGTGTTGGCTTGATGAAAG 59.657 40.000 0.00 0.00 39.07 2.62
1870 3114 6.887368 TGATGAAAGACAGTTCGTATTTGTG 58.113 36.000 0.00 0.00 39.11 3.33
1898 3142 0.913934 TGCTTGTGGGAGCTGGGATA 60.914 55.000 0.00 0.00 43.11 2.59
1902 3146 0.042581 TGTGGGAGCTGGGATACTGA 59.957 55.000 0.00 0.00 0.00 3.41
1909 3153 4.262678 GGGAGCTGGGATACTGATTTACTC 60.263 50.000 0.00 0.00 0.00 2.59
2010 3256 9.072294 GTTAATGTCATGTTATGTTTAACTGCC 57.928 33.333 0.00 0.00 38.81 4.85
2022 3268 6.774354 TGTTTAACTGCCTAAGTAGTTTCG 57.226 37.500 0.00 0.00 45.42 3.46
2063 3309 8.950208 AACTGCCTAAGTAGTTTCTTATCATC 57.050 34.615 0.00 0.00 45.42 2.92
2066 3312 8.948631 TGCCTAAGTAGTTTCTTATCATCTTG 57.051 34.615 0.00 0.00 30.89 3.02
2164 3418 5.921962 AGTTTAATTTTCCATCTGAGGGC 57.078 39.130 2.89 0.00 0.00 5.19
2175 3429 2.768253 TCTGAGGGCATGTGTTACTG 57.232 50.000 0.00 0.00 0.00 2.74
2176 3430 1.977854 TCTGAGGGCATGTGTTACTGT 59.022 47.619 0.00 0.00 0.00 3.55
2177 3431 2.079158 CTGAGGGCATGTGTTACTGTG 58.921 52.381 0.00 0.00 0.00 3.66
2180 3434 3.071747 TGAGGGCATGTGTTACTGTGTTA 59.928 43.478 0.00 0.00 0.00 2.41
2181 3435 3.408634 AGGGCATGTGTTACTGTGTTAC 58.591 45.455 0.00 0.00 0.00 2.50
2182 3436 3.072476 AGGGCATGTGTTACTGTGTTACT 59.928 43.478 0.00 0.00 0.00 2.24
2183 3437 3.188460 GGGCATGTGTTACTGTGTTACTG 59.812 47.826 0.00 0.00 0.00 2.74
2184 3438 4.062293 GGCATGTGTTACTGTGTTACTGA 58.938 43.478 0.00 0.00 0.00 3.41
2185 3439 4.084013 GGCATGTGTTACTGTGTTACTGAC 60.084 45.833 0.00 0.00 0.00 3.51
2198 3452 1.332195 TACTGACTGTGCTCTGCTGT 58.668 50.000 0.00 0.00 0.00 4.40
2208 3462 4.941657 TGTGCTCTGCTGTATTCTATCAG 58.058 43.478 0.00 0.00 35.12 2.90
2215 3469 7.040340 GCTCTGCTGTATTCTATCAGGTTAGTA 60.040 40.741 0.00 0.00 32.94 1.82
2247 3501 7.095649 GCTTTTGATCATTTTGGTTTACTGACC 60.096 37.037 0.00 0.00 40.23 4.02
2543 3799 8.927675 TGGTTATTGTATGTTGTTAGTTTCCT 57.072 30.769 0.00 0.00 0.00 3.36
2608 3867 6.571154 GTGATGGTTTTCGTACGTTAAAGTTC 59.429 38.462 16.05 12.69 0.00 3.01
2609 3868 6.257411 TGATGGTTTTCGTACGTTAAAGTTCA 59.743 34.615 16.05 14.57 0.00 3.18
2610 3869 6.601741 TGGTTTTCGTACGTTAAAGTTCAT 57.398 33.333 16.05 0.00 0.00 2.57
2611 3870 6.648502 TGGTTTTCGTACGTTAAAGTTCATC 58.351 36.000 16.05 4.62 0.00 2.92
2613 3872 6.788930 GGTTTTCGTACGTTAAAGTTCATCTG 59.211 38.462 16.05 0.00 0.00 2.90
2615 3874 6.680055 TTCGTACGTTAAAGTTCATCTGAC 57.320 37.500 16.05 0.00 0.00 3.51
2616 3875 4.847757 TCGTACGTTAAAGTTCATCTGACG 59.152 41.667 16.05 2.18 35.47 4.35
2617 3876 4.847757 CGTACGTTAAAGTTCATCTGACGA 59.152 41.667 7.22 0.00 34.37 4.20
2619 3878 3.673809 ACGTTAAAGTTCATCTGACGAGC 59.326 43.478 0.00 0.00 34.37 5.03
2621 3880 4.327357 CGTTAAAGTTCATCTGACGAGCAT 59.673 41.667 0.00 0.00 33.07 3.79
2622 3881 5.499334 CGTTAAAGTTCATCTGACGAGCATC 60.499 44.000 0.00 0.00 33.07 3.91
2638 3911 2.589540 TCCATCGGTGGTGGATGC 59.410 61.111 15.92 0.00 46.16 3.91
2639 3912 1.995066 TCCATCGGTGGTGGATGCT 60.995 57.895 15.92 0.00 46.16 3.79
2641 3914 1.097547 CCATCGGTGGTGGATGCTTC 61.098 60.000 6.53 0.00 40.83 3.86
2642 3915 0.392863 CATCGGTGGTGGATGCTTCA 60.393 55.000 1.64 0.00 35.35 3.02
2643 3916 0.548031 ATCGGTGGTGGATGCTTCAT 59.452 50.000 1.64 0.00 0.00 2.57
2644 3917 0.392863 TCGGTGGTGGATGCTTCATG 60.393 55.000 1.64 0.00 0.00 3.07
2677 3950 8.453238 TCAGTTATCAGATAGTGGTCTAGTTC 57.547 38.462 0.00 0.00 0.00 3.01
2683 3956 5.297029 TCAGATAGTGGTCTAGTTCGACATG 59.703 44.000 0.00 0.00 35.63 3.21
2684 3957 2.656560 AGTGGTCTAGTTCGACATGC 57.343 50.000 0.00 0.00 35.63 4.06
2685 3958 2.171840 AGTGGTCTAGTTCGACATGCT 58.828 47.619 0.00 0.00 35.63 3.79
2691 3964 3.854809 GTCTAGTTCGACATGCTCTTGTC 59.145 47.826 0.00 5.99 42.10 3.18
2697 3970 0.036732 GACATGCTCTTGTCCACCCA 59.963 55.000 0.00 0.00 40.11 4.51
2701 3974 1.429930 TGCTCTTGTCCACCCACTTA 58.570 50.000 0.00 0.00 0.00 2.24
2702 3975 1.985159 TGCTCTTGTCCACCCACTTAT 59.015 47.619 0.00 0.00 0.00 1.73
2703 3976 3.178046 TGCTCTTGTCCACCCACTTATA 58.822 45.455 0.00 0.00 0.00 0.98
2704 3977 3.780294 TGCTCTTGTCCACCCACTTATAT 59.220 43.478 0.00 0.00 0.00 0.86
2705 3978 4.966168 TGCTCTTGTCCACCCACTTATATA 59.034 41.667 0.00 0.00 0.00 0.86
2706 3979 5.606749 TGCTCTTGTCCACCCACTTATATAT 59.393 40.000 0.00 0.00 0.00 0.86
2707 3980 6.101150 TGCTCTTGTCCACCCACTTATATATT 59.899 38.462 0.00 0.00 0.00 1.28
2708 3981 7.291416 TGCTCTTGTCCACCCACTTATATATTA 59.709 37.037 0.00 0.00 0.00 0.98
2709 3982 8.322091 GCTCTTGTCCACCCACTTATATATTAT 58.678 37.037 0.00 0.00 0.00 1.28
2710 3983 9.658799 CTCTTGTCCACCCACTTATATATTATG 57.341 37.037 0.00 0.00 0.00 1.90
2711 3984 8.100791 TCTTGTCCACCCACTTATATATTATGC 58.899 37.037 0.00 0.00 0.00 3.14
2712 3985 7.568128 TGTCCACCCACTTATATATTATGCT 57.432 36.000 0.00 0.00 0.00 3.79
2756 4029 4.040461 TGAGGGAAGGACTACTTGAAAGTG 59.960 45.833 5.95 0.00 40.21 3.16
2792 4065 9.814899 CTTTTGGGAACATATTGTTTGCATATA 57.185 29.630 0.00 0.00 41.28 0.86
2795 4068 8.121305 TGGGAACATATTGTTTGCATATATCC 57.879 34.615 0.00 0.00 41.28 2.59
2853 4126 1.273327 GAATGGGAGTTTGCACAAGGG 59.727 52.381 0.00 0.00 0.00 3.95
2862 4135 3.957497 AGTTTGCACAAGGGTGTTTATGA 59.043 39.130 0.00 0.00 46.95 2.15
2886 4159 3.008485 GGGATTAGGCATGGGAAGTAGAG 59.992 52.174 0.00 0.00 0.00 2.43
2937 4210 3.181455 TGATGGGAATTGACGTGGGATAG 60.181 47.826 0.00 0.00 0.00 2.08
2949 4222 2.363680 CGTGGGATAGAACTCTGCTCAT 59.636 50.000 0.00 0.00 0.00 2.90
3054 6822 4.553330 TCCCTCTAATCAAACAGTGGAC 57.447 45.455 0.00 0.00 0.00 4.02
3055 6823 3.907474 TCCCTCTAATCAAACAGTGGACA 59.093 43.478 0.00 0.00 0.00 4.02
3085 6854 2.846827 CCTTACCCTCAACTCCCATTCT 59.153 50.000 0.00 0.00 0.00 2.40
3090 6859 3.048600 CCCTCAACTCCCATTCTCCATA 58.951 50.000 0.00 0.00 0.00 2.74
3100 6869 7.028131 ACTCCCATTCTCCATATCTAATTCCT 58.972 38.462 0.00 0.00 0.00 3.36
3102 6871 6.445139 TCCCATTCTCCATATCTAATTCCTCC 59.555 42.308 0.00 0.00 0.00 4.30
3127 6896 2.478894 CCAAACACGCTGTAAGGTGTAG 59.521 50.000 0.00 0.00 44.05 2.74
3139 6908 1.004918 GGTGTAGTGACAAGCGGCT 60.005 57.895 0.00 0.00 37.31 5.52
3140 6909 0.245539 GGTGTAGTGACAAGCGGCTA 59.754 55.000 1.35 0.00 37.31 3.93
3141 6910 1.337447 GGTGTAGTGACAAGCGGCTAA 60.337 52.381 1.35 0.00 37.31 3.09
3142 6911 2.618053 GTGTAGTGACAAGCGGCTAAT 58.382 47.619 1.35 0.00 37.31 1.73
3168 6937 6.569179 TCTGTGCAAAACTAATTTCCTACC 57.431 37.500 0.00 0.00 0.00 3.18
3169 6938 6.303839 TCTGTGCAAAACTAATTTCCTACCT 58.696 36.000 0.00 0.00 0.00 3.08
3170 6939 6.430000 TCTGTGCAAAACTAATTTCCTACCTC 59.570 38.462 0.00 0.00 0.00 3.85
3171 6940 6.303839 TGTGCAAAACTAATTTCCTACCTCT 58.696 36.000 0.00 0.00 0.00 3.69
3172 6941 6.206634 TGTGCAAAACTAATTTCCTACCTCTG 59.793 38.462 0.00 0.00 0.00 3.35
3173 6942 6.430000 GTGCAAAACTAATTTCCTACCTCTGA 59.570 38.462 0.00 0.00 0.00 3.27
3174 6943 7.001674 TGCAAAACTAATTTCCTACCTCTGAA 58.998 34.615 0.00 0.00 0.00 3.02
3175 6944 7.504238 TGCAAAACTAATTTCCTACCTCTGAAA 59.496 33.333 0.00 0.00 35.17 2.69
3176 6945 8.523658 GCAAAACTAATTTCCTACCTCTGAAAT 58.476 33.333 0.00 0.00 41.63 2.17
3177 6946 9.846248 CAAAACTAATTTCCTACCTCTGAAATG 57.154 33.333 0.00 0.00 39.59 2.32
3178 6947 7.631717 AACTAATTTCCTACCTCTGAAATGC 57.368 36.000 0.00 0.00 39.59 3.56
3179 6948 6.721318 ACTAATTTCCTACCTCTGAAATGCA 58.279 36.000 0.00 0.00 39.59 3.96
3180 6949 7.349598 ACTAATTTCCTACCTCTGAAATGCAT 58.650 34.615 0.00 0.00 39.59 3.96
3181 6950 6.461110 AATTTCCTACCTCTGAAATGCATG 57.539 37.500 0.00 0.00 39.59 4.06
3182 6951 4.842531 TTCCTACCTCTGAAATGCATGA 57.157 40.909 0.00 0.00 0.00 3.07
3183 6952 4.412796 TCCTACCTCTGAAATGCATGAG 57.587 45.455 0.00 1.98 0.00 2.90
3184 6953 3.776969 TCCTACCTCTGAAATGCATGAGT 59.223 43.478 0.00 0.00 0.00 3.41
3185 6954 4.225942 TCCTACCTCTGAAATGCATGAGTT 59.774 41.667 0.00 0.00 0.00 3.01
3186 6955 4.946157 CCTACCTCTGAAATGCATGAGTTT 59.054 41.667 0.00 0.00 0.00 2.66
3187 6956 4.778534 ACCTCTGAAATGCATGAGTTTG 57.221 40.909 0.00 0.00 0.00 2.93
3188 6957 4.401022 ACCTCTGAAATGCATGAGTTTGA 58.599 39.130 0.00 0.00 0.00 2.69
3189 6958 4.828939 ACCTCTGAAATGCATGAGTTTGAA 59.171 37.500 0.00 0.00 0.00 2.69
3195 6964 6.210796 TGAAATGCATGAGTTTGAACTTCAG 58.789 36.000 0.00 0.00 39.88 3.02
3199 6968 5.765176 TGCATGAGTTTGAACTTCAGATTG 58.235 37.500 0.00 0.00 39.88 2.67
3200 6969 5.159209 GCATGAGTTTGAACTTCAGATTGG 58.841 41.667 0.00 0.00 39.88 3.16
3254 7023 4.681744 TGAGAACTTTCAAACATGGTTGC 58.318 39.130 19.00 3.53 0.00 4.17
3263 7032 5.731599 TCAAACATGGTTGCATTTTCAAC 57.268 34.783 19.00 0.00 44.07 3.18
3264 7033 5.181009 TCAAACATGGTTGCATTTTCAACA 58.819 33.333 19.00 0.00 45.98 3.33
3265 7034 5.821470 TCAAACATGGTTGCATTTTCAACAT 59.179 32.000 19.00 0.00 45.98 2.71
3266 7035 6.988580 TCAAACATGGTTGCATTTTCAACATA 59.011 30.769 19.00 0.00 45.98 2.29
3268 7037 8.933807 CAAACATGGTTGCATTTTCAACATATA 58.066 29.630 11.22 0.00 45.98 0.86
3341 7268 6.741240 GCATGGTAAAAACTCTTGAAACCCAT 60.741 38.462 0.00 0.00 0.00 4.00
3342 7269 7.524698 GCATGGTAAAAACTCTTGAAACCCATA 60.525 37.037 0.00 0.00 0.00 2.74
3343 7270 7.899648 TGGTAAAAACTCTTGAAACCCATAA 57.100 32.000 0.00 0.00 0.00 1.90
3344 7271 7.947282 TGGTAAAAACTCTTGAAACCCATAAG 58.053 34.615 0.00 0.00 0.00 1.73
3345 7272 7.014808 TGGTAAAAACTCTTGAAACCCATAAGG 59.985 37.037 0.00 0.00 43.78 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.036862 ACGCTTCTACTCCTTCCGTTTT 59.963 45.455 0.00 0.00 0.00 2.43
1 2 1.617357 ACGCTTCTACTCCTTCCGTTT 59.383 47.619 0.00 0.00 0.00 3.60
2 3 1.254954 ACGCTTCTACTCCTTCCGTT 58.745 50.000 0.00 0.00 0.00 4.44
3 4 2.015587 CTACGCTTCTACTCCTTCCGT 58.984 52.381 0.00 0.00 0.00 4.69
4 5 2.015587 ACTACGCTTCTACTCCTTCCG 58.984 52.381 0.00 0.00 0.00 4.30
5 6 4.453177 AAACTACGCTTCTACTCCTTCC 57.547 45.455 0.00 0.00 0.00 3.46
41 45 4.837860 AGGGAAAGGCACAATTATGTTTCA 59.162 37.500 3.20 0.00 37.82 2.69
57 61 4.040445 TGTGCTTTTCGAAAAGGGAAAG 57.960 40.909 38.06 21.89 44.24 2.62
93 97 3.802613 AGCACAGCTTGTACTCTCG 57.197 52.632 0.00 0.00 33.89 4.04
104 108 3.438360 CCGGATAATGAAAAAGCACAGC 58.562 45.455 0.00 0.00 0.00 4.40
105 109 3.694072 TCCCGGATAATGAAAAAGCACAG 59.306 43.478 0.73 0.00 0.00 3.66
111 115 5.732633 TCGTACTTCCCGGATAATGAAAAA 58.267 37.500 0.73 0.00 0.00 1.94
117 121 4.628074 CACAATCGTACTTCCCGGATAAT 58.372 43.478 0.73 0.00 0.00 1.28
120 124 1.472728 GCACAATCGTACTTCCCGGAT 60.473 52.381 0.73 0.00 0.00 4.18
122 126 0.108329 AGCACAATCGTACTTCCCGG 60.108 55.000 0.00 0.00 0.00 5.73
123 127 1.659098 GAAGCACAATCGTACTTCCCG 59.341 52.381 0.00 0.00 38.93 5.14
124 128 2.930682 GAGAAGCACAATCGTACTTCCC 59.069 50.000 2.66 0.00 43.81 3.97
125 129 3.585862 TGAGAAGCACAATCGTACTTCC 58.414 45.455 2.66 0.00 43.81 3.46
130 134 4.093408 GCTTTCATGAGAAGCACAATCGTA 59.907 41.667 25.02 0.00 34.71 3.43
133 137 4.164294 GTGCTTTCATGAGAAGCACAATC 58.836 43.478 37.45 25.45 46.41 2.67
178 183 7.148641 TGCTTTCAAAGTAAGTTGTGTTTCAA 58.851 30.769 0.00 0.00 0.00 2.69
241 246 1.199327 GTTCTAGTTCCGGCAAAAGGC 59.801 52.381 0.00 0.00 43.74 4.35
248 253 0.037232 AGCACTGTTCTAGTTCCGGC 60.037 55.000 0.00 0.00 37.60 6.13
251 256 3.246619 CGAGAAGCACTGTTCTAGTTCC 58.753 50.000 0.00 0.00 37.60 3.62
255 260 2.668556 TTCGCGAGAAGCACTGTTCTAG 60.669 50.000 9.59 0.00 46.92 2.43
258 263 2.517598 TTCGCGAGAAGCACTGTTC 58.482 52.632 9.59 0.00 46.92 3.18
314 319 6.879188 TTTCAGTTTTTGCTCGTTTTAAGG 57.121 33.333 0.00 0.00 0.00 2.69
338 345 9.942850 CAGGTTTTAGATGGGTAATTTTTGAAT 57.057 29.630 0.00 0.00 0.00 2.57
339 346 9.148879 TCAGGTTTTAGATGGGTAATTTTTGAA 57.851 29.630 0.00 0.00 0.00 2.69
340 347 8.713708 TCAGGTTTTAGATGGGTAATTTTTGA 57.286 30.769 0.00 0.00 0.00 2.69
341 348 9.771534 TTTCAGGTTTTAGATGGGTAATTTTTG 57.228 29.630 0.00 0.00 0.00 2.44
351 358 6.027749 GCATACGTTTTCAGGTTTTAGATGG 58.972 40.000 0.00 0.00 0.00 3.51
358 365 5.508200 TTTCTGCATACGTTTTCAGGTTT 57.492 34.783 5.90 0.00 0.00 3.27
370 377 9.928236 TTTGCTTTGTTTTATTTTTCTGCATAC 57.072 25.926 0.00 0.00 0.00 2.39
422 429 2.535984 GTGATTTGTCTAGTCGCCATCG 59.464 50.000 0.00 0.00 0.00 3.84
426 433 4.031426 CGTTAAGTGATTTGTCTAGTCGCC 59.969 45.833 0.00 0.00 0.00 5.54
427 434 4.490479 GCGTTAAGTGATTTGTCTAGTCGC 60.490 45.833 0.00 0.00 0.00 5.19
428 435 4.258899 CGCGTTAAGTGATTTGTCTAGTCG 60.259 45.833 0.00 0.00 0.00 4.18
430 437 3.367025 GCGCGTTAAGTGATTTGTCTAGT 59.633 43.478 8.43 0.00 0.00 2.57
431 438 3.612860 AGCGCGTTAAGTGATTTGTCTAG 59.387 43.478 8.43 0.00 0.00 2.43
433 440 2.412089 GAGCGCGTTAAGTGATTTGTCT 59.588 45.455 8.43 0.00 0.00 3.41
443 450 3.290619 GCTCGAGAGCGCGTTAAG 58.709 61.111 18.75 0.00 45.29 1.85
457 464 3.632145 CACATGGGTGGTTATTTAGGCTC 59.368 47.826 0.00 0.00 41.45 4.70
470 477 2.571548 GAAGGCTTCCACATGGGTG 58.428 57.895 16.50 0.00 44.85 4.61
487 494 2.893424 ACTAACTAACGGTCCCTTGGA 58.107 47.619 0.00 0.00 0.00 3.53
496 503 6.540205 GGCTATTGAAACAACTAACTAACGG 58.460 40.000 0.00 0.00 0.00 4.44
497 504 6.089820 TCGGCTATTGAAACAACTAACTAACG 59.910 38.462 0.00 0.00 0.00 3.18
502 512 4.634991 CGTCGGCTATTGAAACAACTAAC 58.365 43.478 0.00 0.00 0.00 2.34
511 521 2.166870 TCTTAAGGCGTCGGCTATTGAA 59.833 45.455 22.72 12.42 37.50 2.69
512 522 1.752498 TCTTAAGGCGTCGGCTATTGA 59.248 47.619 22.72 15.99 37.50 2.57
514 524 1.538419 GCTCTTAAGGCGTCGGCTATT 60.538 52.381 22.72 10.05 37.50 1.73
522 1416 2.292267 CCAATCATGCTCTTAAGGCGT 58.708 47.619 1.85 3.87 0.00 5.68
528 1422 3.633525 GCATCCAACCAATCATGCTCTTA 59.366 43.478 0.00 0.00 38.89 2.10
529 1423 2.429610 GCATCCAACCAATCATGCTCTT 59.570 45.455 0.00 0.00 38.89 2.85
530 1424 2.029623 GCATCCAACCAATCATGCTCT 58.970 47.619 0.00 0.00 38.89 4.09
531 1425 1.068127 GGCATCCAACCAATCATGCTC 59.932 52.381 2.99 0.00 41.25 4.26
532 1426 1.117150 GGCATCCAACCAATCATGCT 58.883 50.000 2.99 0.00 41.25 3.79
533 1427 0.825410 TGGCATCCAACCAATCATGC 59.175 50.000 0.00 0.00 40.85 4.06
534 1428 3.613494 TTTGGCATCCAACCAATCATG 57.387 42.857 0.00 0.00 46.25 3.07
535 1429 3.583966 ACTTTTGGCATCCAACCAATCAT 59.416 39.130 0.00 0.00 46.25 2.45
536 1430 2.971330 ACTTTTGGCATCCAACCAATCA 59.029 40.909 0.00 0.00 46.25 2.57
537 1431 3.683365 ACTTTTGGCATCCAACCAATC 57.317 42.857 0.00 0.00 46.25 2.67
538 1432 3.496515 CCAACTTTTGGCATCCAACCAAT 60.497 43.478 0.00 0.00 46.25 3.16
539 1433 2.158842 CCAACTTTTGGCATCCAACCAA 60.159 45.455 0.00 0.00 43.82 3.67
540 1434 1.415659 CCAACTTTTGGCATCCAACCA 59.584 47.619 0.00 0.00 43.82 3.67
541 1435 2.168326 CCAACTTTTGGCATCCAACC 57.832 50.000 0.00 0.00 43.82 3.77
551 1445 6.457257 GCCAAATATTAGCATGCCAACTTTTG 60.457 38.462 15.66 18.20 0.00 2.44
552 1446 5.585844 GCCAAATATTAGCATGCCAACTTTT 59.414 36.000 15.66 7.94 0.00 2.27
553 1447 5.118286 GCCAAATATTAGCATGCCAACTTT 58.882 37.500 15.66 8.13 0.00 2.66
554 1448 4.161942 TGCCAAATATTAGCATGCCAACTT 59.838 37.500 15.66 1.78 0.00 2.66
555 1449 3.705579 TGCCAAATATTAGCATGCCAACT 59.294 39.130 15.66 0.00 0.00 3.16
556 1450 4.057406 TGCCAAATATTAGCATGCCAAC 57.943 40.909 15.66 0.00 0.00 3.77
557 1451 4.750021 TTGCCAAATATTAGCATGCCAA 57.250 36.364 15.66 7.75 36.20 4.52
558 1452 4.750021 TTTGCCAAATATTAGCATGCCA 57.250 36.364 15.66 0.00 36.20 4.92
559 1453 5.639082 GGTATTTGCCAAATATTAGCATGCC 59.361 40.000 15.66 8.79 35.92 4.40
560 1454 6.222389 TGGTATTTGCCAAATATTAGCATGC 58.778 36.000 10.51 10.51 35.92 4.06
583 1477 8.627403 AGTCAATCAATCACTAGCCAATATTTG 58.373 33.333 0.00 0.00 0.00 2.32
584 1478 8.757982 AGTCAATCAATCACTAGCCAATATTT 57.242 30.769 0.00 0.00 0.00 1.40
585 1479 9.277783 GTAGTCAATCAATCACTAGCCAATATT 57.722 33.333 0.00 0.00 0.00 1.28
586 1480 7.880195 GGTAGTCAATCAATCACTAGCCAATAT 59.120 37.037 0.00 0.00 35.84 1.28
587 1481 7.147567 TGGTAGTCAATCAATCACTAGCCAATA 60.148 37.037 5.36 0.00 39.40 1.90
588 1482 6.058183 GGTAGTCAATCAATCACTAGCCAAT 58.942 40.000 0.00 0.00 35.84 3.16
589 1483 5.045942 TGGTAGTCAATCAATCACTAGCCAA 60.046 40.000 5.36 0.00 39.40 4.52
590 1484 4.469586 TGGTAGTCAATCAATCACTAGCCA 59.530 41.667 5.36 0.00 39.40 4.75
591 1485 5.023533 TGGTAGTCAATCAATCACTAGCC 57.976 43.478 5.36 0.00 39.40 3.93
592 1486 7.559590 AATTGGTAGTCAATCAATCACTAGC 57.440 36.000 0.00 0.00 44.68 3.42
595 1489 9.082313 AGAAAAATTGGTAGTCAATCAATCACT 57.918 29.630 0.00 0.00 44.68 3.41
596 1490 9.696917 AAGAAAAATTGGTAGTCAATCAATCAC 57.303 29.630 0.00 0.00 44.68 3.06
597 1491 9.912634 GAAGAAAAATTGGTAGTCAATCAATCA 57.087 29.630 0.00 0.00 44.68 2.57
598 1492 9.358872 GGAAGAAAAATTGGTAGTCAATCAATC 57.641 33.333 0.00 0.00 44.68 2.67
599 1493 8.314021 GGGAAGAAAAATTGGTAGTCAATCAAT 58.686 33.333 0.00 0.00 44.68 2.57
600 1494 7.288852 TGGGAAGAAAAATTGGTAGTCAATCAA 59.711 33.333 0.00 0.00 44.68 2.57
601 1495 6.780031 TGGGAAGAAAAATTGGTAGTCAATCA 59.220 34.615 0.00 0.00 44.68 2.57
602 1496 7.227049 TGGGAAGAAAAATTGGTAGTCAATC 57.773 36.000 0.00 0.00 44.68 2.67
604 1498 7.288852 TGATTGGGAAGAAAAATTGGTAGTCAA 59.711 33.333 0.00 0.00 40.01 3.18
605 1499 6.780031 TGATTGGGAAGAAAAATTGGTAGTCA 59.220 34.615 0.00 0.00 0.00 3.41
606 1500 7.090808 GTGATTGGGAAGAAAAATTGGTAGTC 58.909 38.462 0.00 0.00 0.00 2.59
607 1501 6.553100 TGTGATTGGGAAGAAAAATTGGTAGT 59.447 34.615 0.00 0.00 0.00 2.73
608 1502 6.868339 GTGTGATTGGGAAGAAAAATTGGTAG 59.132 38.462 0.00 0.00 0.00 3.18
609 1503 6.325028 TGTGTGATTGGGAAGAAAAATTGGTA 59.675 34.615 0.00 0.00 0.00 3.25
610 1504 5.130145 TGTGTGATTGGGAAGAAAAATTGGT 59.870 36.000 0.00 0.00 0.00 3.67
611 1505 5.609423 TGTGTGATTGGGAAGAAAAATTGG 58.391 37.500 0.00 0.00 0.00 3.16
612 1506 7.551035 TTTGTGTGATTGGGAAGAAAAATTG 57.449 32.000 0.00 0.00 0.00 2.32
613 1507 8.572855 TTTTTGTGTGATTGGGAAGAAAAATT 57.427 26.923 0.00 0.00 0.00 1.82
614 1508 7.828717 ACTTTTTGTGTGATTGGGAAGAAAAAT 59.171 29.630 0.00 0.00 0.00 1.82
615 1509 7.164803 ACTTTTTGTGTGATTGGGAAGAAAAA 58.835 30.769 0.00 0.00 0.00 1.94
616 1510 6.706295 ACTTTTTGTGTGATTGGGAAGAAAA 58.294 32.000 0.00 0.00 0.00 2.29
617 1511 6.293004 ACTTTTTGTGTGATTGGGAAGAAA 57.707 33.333 0.00 0.00 0.00 2.52
618 1512 5.930837 ACTTTTTGTGTGATTGGGAAGAA 57.069 34.783 0.00 0.00 0.00 2.52
619 1513 5.659463 CAACTTTTTGTGTGATTGGGAAGA 58.341 37.500 0.00 0.00 0.00 2.87
620 1514 4.270808 GCAACTTTTTGTGTGATTGGGAAG 59.729 41.667 0.00 0.00 34.90 3.46
621 1515 4.187694 GCAACTTTTTGTGTGATTGGGAA 58.812 39.130 0.00 0.00 34.90 3.97
622 1516 3.431486 GGCAACTTTTTGTGTGATTGGGA 60.431 43.478 0.00 0.00 34.90 4.37
623 1517 2.871633 GGCAACTTTTTGTGTGATTGGG 59.128 45.455 0.00 0.00 34.90 4.12
624 1518 3.529533 TGGCAACTTTTTGTGTGATTGG 58.470 40.909 0.00 0.00 34.90 3.16
625 1519 4.391216 TGTTGGCAACTTTTTGTGTGATTG 59.609 37.500 28.71 0.00 34.90 2.67
626 1520 4.573900 TGTTGGCAACTTTTTGTGTGATT 58.426 34.783 28.71 0.00 34.90 2.57
627 1521 4.199432 TGTTGGCAACTTTTTGTGTGAT 57.801 36.364 28.71 0.00 34.90 3.06
628 1522 3.667497 TGTTGGCAACTTTTTGTGTGA 57.333 38.095 28.71 3.84 34.90 3.58
629 1523 4.943142 AATGTTGGCAACTTTTTGTGTG 57.057 36.364 28.71 0.00 34.90 3.82
630 1524 4.155644 CCAAATGTTGGCAACTTTTTGTGT 59.844 37.500 32.56 18.82 45.17 3.72
631 1525 4.660105 CCAAATGTTGGCAACTTTTTGTG 58.340 39.130 32.56 25.34 45.17 3.33
632 1526 4.961435 CCAAATGTTGGCAACTTTTTGT 57.039 36.364 32.56 19.32 45.17 2.83
644 1538 6.020520 GCAAAATCAAAAGTTGCCAAATGTTG 60.021 34.615 1.39 1.39 41.41 3.33
645 1539 6.035217 GCAAAATCAAAAGTTGCCAAATGTT 58.965 32.000 0.00 0.00 41.41 2.71
646 1540 5.580661 GCAAAATCAAAAGTTGCCAAATGT 58.419 33.333 0.00 0.00 41.41 2.71
653 1547 5.580661 ACATTTGGCAAAATCAAAAGTTGC 58.419 33.333 17.70 0.00 45.48 4.17
654 1548 7.439204 CAACATTTGGCAAAATCAAAAGTTG 57.561 32.000 17.70 17.09 46.81 3.16
655 1549 6.562518 CCAACATTTGGCAAAATCAAAAGTT 58.437 32.000 17.70 9.90 45.17 2.66
656 1550 6.134040 CCAACATTTGGCAAAATCAAAAGT 57.866 33.333 17.70 4.62 45.17 2.66
677 1571 4.025360 AGAGCATAATTGGTTTGATGCCA 58.975 39.130 5.24 0.00 44.65 4.92
678 1572 4.660789 AGAGCATAATTGGTTTGATGCC 57.339 40.909 5.24 0.00 44.65 4.40
679 1573 6.694411 CACTTAGAGCATAATTGGTTTGATGC 59.306 38.462 1.15 1.15 44.05 3.91
680 1574 6.694411 GCACTTAGAGCATAATTGGTTTGATG 59.306 38.462 0.00 0.00 32.62 3.07
681 1575 6.183360 GGCACTTAGAGCATAATTGGTTTGAT 60.183 38.462 3.83 0.00 32.62 2.57
682 1576 5.125417 GGCACTTAGAGCATAATTGGTTTGA 59.875 40.000 3.83 0.00 32.62 2.69
683 1577 5.343249 GGCACTTAGAGCATAATTGGTTTG 58.657 41.667 3.83 0.00 32.62 2.93
684 1578 4.096382 CGGCACTTAGAGCATAATTGGTTT 59.904 41.667 3.83 0.00 32.62 3.27
685 1579 3.627577 CGGCACTTAGAGCATAATTGGTT 59.372 43.478 3.83 0.00 32.62 3.67
686 1580 3.118408 TCGGCACTTAGAGCATAATTGGT 60.118 43.478 3.83 0.00 35.95 3.67
687 1581 3.466836 TCGGCACTTAGAGCATAATTGG 58.533 45.455 3.83 0.00 0.00 3.16
688 1582 5.679734 ATTCGGCACTTAGAGCATAATTG 57.320 39.130 3.83 0.00 0.00 2.32
689 1583 5.934625 CCTATTCGGCACTTAGAGCATAATT 59.065 40.000 3.83 0.00 0.00 1.40
690 1584 5.246203 TCCTATTCGGCACTTAGAGCATAAT 59.754 40.000 3.83 5.22 0.00 1.28
691 1585 4.587262 TCCTATTCGGCACTTAGAGCATAA 59.413 41.667 3.83 0.00 0.00 1.90
692 1586 4.149598 TCCTATTCGGCACTTAGAGCATA 58.850 43.478 3.83 0.00 0.00 3.14
693 1587 2.965831 TCCTATTCGGCACTTAGAGCAT 59.034 45.455 3.83 0.00 0.00 3.79
694 1588 2.384828 TCCTATTCGGCACTTAGAGCA 58.615 47.619 3.83 0.00 0.00 4.26
695 1589 3.454371 TTCCTATTCGGCACTTAGAGC 57.546 47.619 0.00 0.00 0.00 4.09
696 1590 4.230657 CGATTCCTATTCGGCACTTAGAG 58.769 47.826 0.00 0.00 33.05 2.43
697 1591 4.238761 CGATTCCTATTCGGCACTTAGA 57.761 45.455 0.00 0.00 33.05 2.10
728 1622 2.659428 GCATTTCAGAGGCCCATAAGT 58.341 47.619 0.00 0.00 0.00 2.24
741 1635 8.877779 TCAAAAGAAAAAGAAAATCGCATTTCA 58.122 25.926 13.04 0.00 40.89 2.69
755 1649 3.545633 CGCGTCTCCTCAAAAGAAAAAG 58.454 45.455 0.00 0.00 0.00 2.27
792 1689 0.241749 CCTGCACTCGTGGTACGTAA 59.758 55.000 0.00 0.00 43.14 3.18
793 1690 1.878070 CCTGCACTCGTGGTACGTA 59.122 57.895 0.00 0.00 43.14 3.57
923 1820 2.275318 GAAAATGAGACGCTGAGGAGG 58.725 52.381 0.00 0.00 0.00 4.30
1021 1918 3.600388 ACCAAATCAATCAGAGACGACC 58.400 45.455 0.00 0.00 0.00 4.79
1259 2156 2.159366 CCTAGGCGCGGATTACTCTATG 60.159 54.545 8.83 0.00 0.00 2.23
1273 2170 1.804326 CACGACGGAAACCTAGGCG 60.804 63.158 9.30 6.85 0.00 5.52
1516 2748 3.944087 AGAGCGCTTCCAAGTAAAGAAT 58.056 40.909 13.26 0.00 0.00 2.40
1525 2765 2.543777 ACAAACTAGAGCGCTTCCAA 57.456 45.000 13.26 0.00 0.00 3.53
1726 2968 0.166814 GCGAACAACTAGGCAAGCAG 59.833 55.000 0.00 0.00 0.00 4.24
1727 2969 0.250295 AGCGAACAACTAGGCAAGCA 60.250 50.000 0.00 0.00 0.00 3.91
1735 2977 2.289195 CCTAACCACCAGCGAACAACTA 60.289 50.000 0.00 0.00 0.00 2.24
1739 2981 0.470766 AACCTAACCACCAGCGAACA 59.529 50.000 0.00 0.00 0.00 3.18
1754 2997 7.119387 CCAGGTTAGAAGGATTTCATAAACCT 58.881 38.462 12.21 12.21 44.86 3.50
1810 3054 3.128938 ACGTTCTCCAACCTAGAGATTCG 59.871 47.826 0.00 11.46 40.01 3.34
1834 3078 4.341806 TGTCTTTCATCAAGCCAACACAAT 59.658 37.500 0.00 0.00 31.70 2.71
1854 3098 5.220381 TCAGACTCACAAATACGAACTGTC 58.780 41.667 0.00 0.00 0.00 3.51
1861 3105 5.106948 ACAAGCAATCAGACTCACAAATACG 60.107 40.000 0.00 0.00 0.00 3.06
1870 3114 2.354259 CTCCCACAAGCAATCAGACTC 58.646 52.381 0.00 0.00 0.00 3.36
1898 3142 9.627395 GCGATACATAATACAGAGTAAATCAGT 57.373 33.333 0.00 0.00 0.00 3.41
1902 3146 9.982651 AAGTGCGATACATAATACAGAGTAAAT 57.017 29.630 0.00 0.00 0.00 1.40
1909 3153 7.700322 AAGACAAGTGCGATACATAATACAG 57.300 36.000 0.00 0.00 0.00 2.74
2010 3256 8.912787 ACACAAGATGATACGAAACTACTTAG 57.087 34.615 0.00 0.00 0.00 2.18
2022 3268 6.743575 AGGCAGTTAAACACAAGATGATAC 57.256 37.500 0.00 0.00 0.00 2.24
2164 3418 5.753438 ACAGTCAGTAACACAGTAACACATG 59.247 40.000 0.00 0.00 0.00 3.21
2175 3429 1.795286 GCAGAGCACAGTCAGTAACAC 59.205 52.381 0.00 0.00 0.00 3.32
2176 3430 1.688735 AGCAGAGCACAGTCAGTAACA 59.311 47.619 0.00 0.00 0.00 2.41
2177 3431 2.064762 CAGCAGAGCACAGTCAGTAAC 58.935 52.381 0.00 0.00 0.00 2.50
2180 3434 1.332195 TACAGCAGAGCACAGTCAGT 58.668 50.000 0.00 0.00 0.00 3.41
2181 3435 2.669300 ATACAGCAGAGCACAGTCAG 57.331 50.000 0.00 0.00 0.00 3.51
2182 3436 2.564504 AGAATACAGCAGAGCACAGTCA 59.435 45.455 0.00 0.00 0.00 3.41
2183 3437 3.244033 AGAATACAGCAGAGCACAGTC 57.756 47.619 0.00 0.00 0.00 3.51
2184 3438 4.403752 TGATAGAATACAGCAGAGCACAGT 59.596 41.667 0.00 0.00 0.00 3.55
2185 3439 4.941657 TGATAGAATACAGCAGAGCACAG 58.058 43.478 0.00 0.00 0.00 3.66
2198 3452 8.534954 AGCACTTGTACTAACCTGATAGAATA 57.465 34.615 0.00 0.00 0.00 1.75
2208 3462 6.554334 TGATCAAAAGCACTTGTACTAACC 57.446 37.500 0.00 0.00 0.00 2.85
2215 3469 5.673514 ACCAAAATGATCAAAAGCACTTGT 58.326 33.333 0.00 0.00 0.00 3.16
2258 3514 6.432162 TCTTCAAAGAGAGCTGCACAATATTT 59.568 34.615 1.02 0.00 0.00 1.40
2354 3610 0.446222 CTCGGCCGGTAAAACATGTG 59.554 55.000 27.83 0.00 0.00 3.21
2491 3747 0.925466 GCAACACAAACAAGCAGCTG 59.075 50.000 10.11 10.11 0.00 4.24
2543 3799 2.811431 CGCTTCCACAATCAGGTTAACA 59.189 45.455 8.10 0.00 0.00 2.41
2608 3867 1.416373 CGATGGATGCTCGTCAGATG 58.584 55.000 0.00 0.00 0.00 2.90
2609 3868 0.316522 CCGATGGATGCTCGTCAGAT 59.683 55.000 5.64 0.00 34.36 2.90
2610 3869 1.037579 ACCGATGGATGCTCGTCAGA 61.038 55.000 5.64 0.00 34.36 3.27
2611 3870 0.873312 CACCGATGGATGCTCGTCAG 60.873 60.000 5.64 0.00 34.36 3.51
2613 3872 4.018609 CACCGATGGATGCTCGTC 57.981 61.111 5.64 0.00 34.36 4.20
2638 3911 6.537660 TCTGATAACTGATGCAGAACATGAAG 59.462 38.462 0.00 0.00 39.84 3.02
2639 3912 6.408869 TCTGATAACTGATGCAGAACATGAA 58.591 36.000 0.00 0.00 39.84 2.57
2641 3914 6.862711 ATCTGATAACTGATGCAGAACATG 57.137 37.500 0.82 0.00 39.84 3.21
2642 3915 7.656542 CACTATCTGATAACTGATGCAGAACAT 59.343 37.037 0.82 0.00 43.54 2.71
2643 3916 6.982724 CACTATCTGATAACTGATGCAGAACA 59.017 38.462 0.82 0.00 40.38 3.18
2644 3917 6.423302 CCACTATCTGATAACTGATGCAGAAC 59.577 42.308 0.82 0.00 40.38 3.01
2683 3956 2.789409 ATAAGTGGGTGGACAAGAGC 57.211 50.000 0.00 0.00 0.00 4.09
2684 3957 9.658799 CATAATATATAAGTGGGTGGACAAGAG 57.341 37.037 0.00 0.00 0.00 2.85
2685 3958 8.100791 GCATAATATATAAGTGGGTGGACAAGA 58.899 37.037 0.00 0.00 0.00 3.02
2717 3990 5.830799 TCCCTCACACAGATATGCATAAT 57.169 39.130 11.13 0.00 0.00 1.28
2725 3998 3.474798 AGTCCTTCCCTCACACAGATA 57.525 47.619 0.00 0.00 0.00 1.98
2756 4029 9.260002 CAATATGTTCCCAAAAGTTATTATGCC 57.740 33.333 0.00 0.00 0.00 4.40
2822 4095 4.195334 CCCATTCCCCTGCCCGAG 62.195 72.222 0.00 0.00 0.00 4.63
2823 4096 4.750695 TCCCATTCCCCTGCCCGA 62.751 66.667 0.00 0.00 0.00 5.14
2853 4126 5.010012 CCATGCCTAATCCCTTCATAAACAC 59.990 44.000 0.00 0.00 0.00 3.32
2855 4128 4.524328 CCCATGCCTAATCCCTTCATAAAC 59.476 45.833 0.00 0.00 0.00 2.01
2862 4135 2.217776 ACTTCCCATGCCTAATCCCTT 58.782 47.619 0.00 0.00 0.00 3.95
2886 4159 5.478407 CAAACAAGGGAATGGATGTAAACC 58.522 41.667 0.00 0.00 0.00 3.27
2937 4210 5.065731 CCCTGTTAATTCATGAGCAGAGTTC 59.934 44.000 0.00 0.00 0.00 3.01
2998 6766 0.840722 GGAAGGGGACTGGGAGTTGA 60.841 60.000 0.00 0.00 42.68 3.18
3054 6822 6.768381 GGAGTTGAGGGTAAGGAGATTAAATG 59.232 42.308 0.00 0.00 0.00 2.32
3055 6823 6.126449 GGGAGTTGAGGGTAAGGAGATTAAAT 60.126 42.308 0.00 0.00 0.00 1.40
3085 6854 5.152193 TGGTTCGGAGGAATTAGATATGGA 58.848 41.667 0.00 0.00 34.05 3.41
3090 6859 4.941873 GTGTTTGGTTCGGAGGAATTAGAT 59.058 41.667 0.00 0.00 34.05 1.98
3100 6869 0.104487 TACAGCGTGTTTGGTTCGGA 59.896 50.000 0.00 0.00 0.00 4.55
3102 6871 1.070175 CCTTACAGCGTGTTTGGTTCG 60.070 52.381 0.00 0.00 0.00 3.95
3127 6896 3.871594 ACAGATAATTAGCCGCTTGTCAC 59.128 43.478 0.00 0.00 0.00 3.67
3142 6911 8.736244 GGTAGGAAATTAGTTTTGCACAGATAA 58.264 33.333 0.00 0.00 38.06 1.75
3166 6935 4.401022 TCAAACTCATGCATTTCAGAGGT 58.599 39.130 14.31 6.60 32.52 3.85
3167 6936 5.048224 AGTTCAAACTCATGCATTTCAGAGG 60.048 40.000 14.31 0.24 32.86 3.69
3168 6937 6.010294 AGTTCAAACTCATGCATTTCAGAG 57.990 37.500 9.58 9.58 32.86 3.35
3169 6938 6.039605 TGAAGTTCAAACTCATGCATTTCAGA 59.960 34.615 2.20 0.00 38.57 3.27
3170 6939 6.210796 TGAAGTTCAAACTCATGCATTTCAG 58.789 36.000 2.20 0.00 38.57 3.02
3171 6940 6.039605 TCTGAAGTTCAAACTCATGCATTTCA 59.960 34.615 7.06 0.00 38.57 2.69
3172 6941 6.441274 TCTGAAGTTCAAACTCATGCATTTC 58.559 36.000 7.06 0.00 38.57 2.17
3173 6942 6.395426 TCTGAAGTTCAAACTCATGCATTT 57.605 33.333 7.06 0.00 38.57 2.32
3174 6943 6.585695 ATCTGAAGTTCAAACTCATGCATT 57.414 33.333 7.06 0.00 38.57 3.56
3175 6944 6.387465 CAATCTGAAGTTCAAACTCATGCAT 58.613 36.000 7.06 0.00 38.57 3.96
3176 6945 5.278610 CCAATCTGAAGTTCAAACTCATGCA 60.279 40.000 7.06 0.00 38.57 3.96
3177 6946 5.048504 TCCAATCTGAAGTTCAAACTCATGC 60.049 40.000 7.06 0.00 38.57 4.06
3178 6947 6.206243 AGTCCAATCTGAAGTTCAAACTCATG 59.794 38.462 7.06 1.26 38.57 3.07
3179 6948 6.302269 AGTCCAATCTGAAGTTCAAACTCAT 58.698 36.000 7.06 0.00 38.57 2.90
3180 6949 5.684704 AGTCCAATCTGAAGTTCAAACTCA 58.315 37.500 7.06 0.00 38.57 3.41
3181 6950 6.625873 AAGTCCAATCTGAAGTTCAAACTC 57.374 37.500 7.06 0.00 38.57 3.01
3182 6951 6.603201 TGAAAGTCCAATCTGAAGTTCAAACT 59.397 34.615 7.06 1.77 42.04 2.66
3183 6952 6.795399 TGAAAGTCCAATCTGAAGTTCAAAC 58.205 36.000 7.06 0.00 0.00 2.93
3184 6953 7.503566 AGATGAAAGTCCAATCTGAAGTTCAAA 59.496 33.333 7.06 0.00 0.00 2.69
3185 6954 7.000472 AGATGAAAGTCCAATCTGAAGTTCAA 59.000 34.615 7.06 0.00 0.00 2.69
3186 6955 6.537355 AGATGAAAGTCCAATCTGAAGTTCA 58.463 36.000 5.25 5.25 0.00 3.18
3187 6956 7.390162 AGAAGATGAAAGTCCAATCTGAAGTTC 59.610 37.037 0.00 0.00 0.00 3.01
3188 6957 7.174599 CAGAAGATGAAAGTCCAATCTGAAGTT 59.825 37.037 0.00 0.00 0.00 2.66
3189 6958 6.654161 CAGAAGATGAAAGTCCAATCTGAAGT 59.346 38.462 0.00 0.00 0.00 3.01
3195 6964 4.096081 CAGGCAGAAGATGAAAGTCCAATC 59.904 45.833 0.00 0.00 0.00 2.67
3199 6968 1.742268 GCAGGCAGAAGATGAAAGTCC 59.258 52.381 0.00 0.00 0.00 3.85
3200 6969 2.419324 CAGCAGGCAGAAGATGAAAGTC 59.581 50.000 0.00 0.00 0.00 3.01
3277 7202 9.088987 AGGTTTTTAGGAGCTTTCAAAATGATA 57.911 29.630 0.00 0.00 0.00 2.15
3280 7205 7.710475 TCAAGGTTTTTAGGAGCTTTCAAAATG 59.290 33.333 0.00 0.00 32.93 2.32
3281 7206 7.791029 TCAAGGTTTTTAGGAGCTTTCAAAAT 58.209 30.769 0.00 0.00 32.93 1.82
3282 7207 7.176589 TCAAGGTTTTTAGGAGCTTTCAAAA 57.823 32.000 0.00 0.00 32.93 2.44
3285 7210 6.783708 TTTCAAGGTTTTTAGGAGCTTTCA 57.216 33.333 0.00 0.00 32.93 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.