Multiple sequence alignment - TraesCS2B01G295500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G295500 chr2B 100.000 2630 0 0 1 2630 412659749 412662378 0.000000e+00 4857.0
1 TraesCS2B01G295500 chr2B 98.371 1719 27 1 1 1718 412713500 412715218 0.000000e+00 3018.0
2 TraesCS2B01G295500 chr2B 98.598 856 11 1 1775 2630 412715215 412716069 0.000000e+00 1513.0
3 TraesCS2B01G295500 chr7B 96.364 220 7 1 1 219 223808134 223807915 6.920000e-96 361.0
4 TraesCS2B01G295500 chr3B 91.358 162 13 1 63 223 104722430 104722269 1.230000e-53 220.0
5 TraesCS2B01G295500 chr3B 88.608 158 17 1 63 219 185954767 185954924 9.610000e-45 191.0
6 TraesCS2B01G295500 chr3B 88.050 159 18 1 63 220 184381623 184381781 1.240000e-43 187.0
7 TraesCS2B01G295500 chr3B 96.875 32 1 0 18 49 104722458 104722427 1.000000e-03 54.7
8 TraesCS2B01G295500 chr4B 89.474 152 14 2 73 223 27021450 27021600 9.610000e-45 191.0
9 TraesCS2B01G295500 chr1D 84.393 173 21 5 63 233 274041031 274041199 5.820000e-37 165.0
10 TraesCS2B01G295500 chr3A 80.676 207 21 11 16 220 453202559 453202370 2.730000e-30 143.0
11 TraesCS2B01G295500 chr3D 80.905 199 21 8 22 219 339588563 339588381 9.810000e-30 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G295500 chr2B 412659749 412662378 2629 False 4857.0 4857 100.0000 1 2630 1 chr2B.!!$F1 2629
1 TraesCS2B01G295500 chr2B 412713500 412716069 2569 False 2265.5 3018 98.4845 1 2630 2 chr2B.!!$F2 2629

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
756 757 0.462759 GCCTAAACCTGCTCGCAGAT 60.463 55.0 19.78 0.0 46.3 2.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1735 1737 0.033208 CATACCCCCACCAGCATGTT 60.033 55.0 0.0 0.0 0.0 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 3.004171 TGTGTTGGTCCGTTATATGCAC 58.996 45.455 0.00 0.00 0.00 4.57
107 108 5.106987 ACAACACAACTTTTCTCGTTTACGT 60.107 36.000 1.88 0.00 40.80 3.57
181 182 6.560003 TCTAACCTATGTGGATGAATGTGT 57.440 37.500 0.00 0.00 39.71 3.72
278 279 1.979155 CTCCACTGTCGAGAGCCCA 60.979 63.158 9.90 0.00 0.00 5.36
393 394 4.862823 GCCCCTCTCCTACGGCCT 62.863 72.222 0.00 0.00 35.23 5.19
413 414 2.046892 CTCCACCCTTGACGGCTG 60.047 66.667 0.00 0.00 0.00 4.85
458 459 1.512156 GGTGGCGCTTTTCTTTCCGA 61.512 55.000 7.64 0.00 0.00 4.55
623 624 1.615424 GGAAGGGGGTGCTGGTCTA 60.615 63.158 0.00 0.00 0.00 2.59
736 737 1.227674 GTCGACTCCATGATGGGCC 60.228 63.158 12.26 0.00 38.32 5.80
756 757 0.462759 GCCTAAACCTGCTCGCAGAT 60.463 55.000 19.78 0.00 46.30 2.90
1115 1116 3.664107 TCATCAACCTTCCTTTCGAGTG 58.336 45.455 0.00 0.00 0.00 3.51
1124 1125 3.319137 TCCTTTCGAGTGGATGAACAG 57.681 47.619 4.61 0.00 0.00 3.16
1250 1251 0.456653 CCTTTTGCCGAGCCAATTCG 60.457 55.000 0.00 0.00 40.18 3.34
1499 1500 1.868713 TCTTGGTATAGCGACCCCAA 58.131 50.000 0.00 1.76 38.89 4.12
1593 1594 1.343465 GAAGGGGAGAACGTCAAGTCA 59.657 52.381 0.00 0.00 0.00 3.41
1597 1598 1.009389 GGAGAACGTCAAGTCAGGCG 61.009 60.000 0.00 0.00 0.00 5.52
1604 1605 2.435586 CAAGTCAGGCGAGCAGGG 60.436 66.667 0.00 0.00 0.00 4.45
1605 1606 2.925170 AAGTCAGGCGAGCAGGGT 60.925 61.111 0.00 0.00 0.00 4.34
1686 1688 2.798145 GCAAAGAAATTATTCCCGGCGG 60.798 50.000 21.46 21.46 36.12 6.13
1718 1720 4.154918 CGAAAAGGGAATGGACAGAAGAAG 59.845 45.833 0.00 0.00 0.00 2.85
1719 1721 2.797177 AGGGAATGGACAGAAGAAGC 57.203 50.000 0.00 0.00 0.00 3.86
1720 1722 1.065854 AGGGAATGGACAGAAGAAGCG 60.066 52.381 0.00 0.00 0.00 4.68
1721 1723 1.066143 GGGAATGGACAGAAGAAGCGA 60.066 52.381 0.00 0.00 0.00 4.93
1722 1724 2.615493 GGGAATGGACAGAAGAAGCGAA 60.615 50.000 0.00 0.00 0.00 4.70
1723 1725 3.074412 GGAATGGACAGAAGAAGCGAAA 58.926 45.455 0.00 0.00 0.00 3.46
1724 1726 3.126000 GGAATGGACAGAAGAAGCGAAAG 59.874 47.826 0.00 0.00 0.00 2.62
1736 1738 2.345991 CGAAAGCCAGGTCCGGAA 59.654 61.111 5.23 0.00 0.00 4.30
1737 1739 2.033194 CGAAAGCCAGGTCCGGAAC 61.033 63.158 13.02 13.02 0.00 3.62
1738 1740 1.072505 GAAAGCCAGGTCCGGAACA 59.927 57.895 24.28 0.00 0.00 3.18
1739 1741 0.322546 GAAAGCCAGGTCCGGAACAT 60.323 55.000 24.28 3.63 0.00 2.71
1740 1742 0.609131 AAAGCCAGGTCCGGAACATG 60.609 55.000 24.28 16.41 39.38 3.21
1741 1743 3.134127 GCCAGGTCCGGAACATGC 61.134 66.667 24.28 19.74 38.35 4.06
1742 1744 2.671070 CCAGGTCCGGAACATGCT 59.329 61.111 24.28 0.00 38.35 3.79
1743 1745 1.746615 CCAGGTCCGGAACATGCTG 60.747 63.158 24.28 11.14 38.35 4.41
1744 1746 1.746615 CAGGTCCGGAACATGCTGG 60.747 63.158 24.28 0.00 32.16 4.85
1745 1747 2.224159 AGGTCCGGAACATGCTGGT 61.224 57.895 24.28 0.00 35.72 4.00
1746 1748 2.040544 GGTCCGGAACATGCTGGTG 61.041 63.158 16.61 0.00 35.72 4.17
1747 1749 2.040544 GTCCGGAACATGCTGGTGG 61.041 63.158 5.23 0.00 35.72 4.61
1748 1750 2.751436 CCGGAACATGCTGGTGGG 60.751 66.667 0.00 0.00 0.00 4.61
1749 1751 2.751436 CGGAACATGCTGGTGGGG 60.751 66.667 0.00 0.00 0.00 4.96
1750 1752 2.362889 GGAACATGCTGGTGGGGG 60.363 66.667 0.00 0.00 0.00 5.40
1751 1753 2.440599 GAACATGCTGGTGGGGGT 59.559 61.111 0.00 0.00 0.00 4.95
1752 1754 1.688811 GAACATGCTGGTGGGGGTA 59.311 57.895 0.00 0.00 0.00 3.69
1753 1755 0.258774 GAACATGCTGGTGGGGGTAT 59.741 55.000 0.00 0.00 0.00 2.73
1754 1756 0.033208 AACATGCTGGTGGGGGTATG 60.033 55.000 0.00 0.00 0.00 2.39
1755 1757 1.829533 CATGCTGGTGGGGGTATGC 60.830 63.158 0.00 0.00 0.00 3.14
1756 1758 2.315794 ATGCTGGTGGGGGTATGCA 61.316 57.895 0.00 0.00 34.88 3.96
1757 1759 2.440247 GCTGGTGGGGGTATGCAC 60.440 66.667 0.00 0.00 0.00 4.57
1758 1760 2.124736 CTGGTGGGGGTATGCACG 60.125 66.667 0.00 0.00 0.00 5.34
1759 1761 2.608059 TGGTGGGGGTATGCACGA 60.608 61.111 0.00 0.00 0.00 4.35
1760 1762 2.191786 CTGGTGGGGGTATGCACGAA 62.192 60.000 0.00 0.00 0.00 3.85
1761 1763 1.747745 GGTGGGGGTATGCACGAAC 60.748 63.158 0.00 0.00 0.00 3.95
1762 1764 1.298667 GTGGGGGTATGCACGAACT 59.701 57.895 0.00 0.00 0.00 3.01
1763 1765 1.024579 GTGGGGGTATGCACGAACTG 61.025 60.000 0.00 0.00 0.00 3.16
1764 1766 1.451387 GGGGGTATGCACGAACTGG 60.451 63.158 0.00 0.00 0.00 4.00
1765 1767 1.451387 GGGGTATGCACGAACTGGG 60.451 63.158 0.00 0.00 0.00 4.45
1766 1768 1.451387 GGGTATGCACGAACTGGGG 60.451 63.158 0.00 0.00 0.00 4.96
1767 1769 1.298667 GGTATGCACGAACTGGGGT 59.701 57.895 0.00 0.00 0.00 4.95
1768 1770 0.743345 GGTATGCACGAACTGGGGTC 60.743 60.000 0.00 0.00 0.00 4.46
1769 1771 1.082117 GTATGCACGAACTGGGGTCG 61.082 60.000 3.34 3.34 0.00 4.79
1770 1772 1.252215 TATGCACGAACTGGGGTCGA 61.252 55.000 11.96 0.00 0.00 4.20
1771 1773 2.432628 GCACGAACTGGGGTCGAG 60.433 66.667 11.96 5.07 0.00 4.04
1772 1774 3.048602 CACGAACTGGGGTCGAGT 58.951 61.111 11.96 0.00 0.00 4.18
1773 1775 1.080705 CACGAACTGGGGTCGAGTC 60.081 63.158 11.96 0.00 0.00 3.36
1774 1776 1.529948 ACGAACTGGGGTCGAGTCA 60.530 57.895 11.96 0.00 0.00 3.41
1775 1777 1.213013 CGAACTGGGGTCGAGTCAG 59.787 63.158 0.00 7.72 34.91 3.51
1776 1778 1.241990 CGAACTGGGGTCGAGTCAGA 61.242 60.000 14.15 0.00 33.19 3.27
1777 1779 0.966920 GAACTGGGGTCGAGTCAGAA 59.033 55.000 14.15 0.00 33.19 3.02
2006 2008 0.822164 AGCCCTGCAAAGATCAATGC 59.178 50.000 13.97 13.97 42.86 3.56
2028 2030 0.676782 GTGGTAGCGTGGAATTGCCT 60.677 55.000 0.00 0.00 37.63 4.75
2102 2104 5.241662 CCGAAGATCCTGATATCCTTTTCC 58.758 45.833 0.00 0.00 0.00 3.13
2103 2105 5.012561 CCGAAGATCCTGATATCCTTTTCCT 59.987 44.000 0.00 0.00 0.00 3.36
2108 2110 5.620738 TCCTGATATCCTTTTCCTGTCTG 57.379 43.478 0.00 0.00 0.00 3.51
2131 2133 5.241506 TGAAACAAAGCTTGACAGGAATAGG 59.758 40.000 0.00 0.00 0.00 2.57
2168 2170 3.244181 GGGGATGTTGAACATGCAAAACT 60.244 43.478 26.93 0.00 46.96 2.66
2192 2194 0.608308 GGTTAGGGACTGTGTTGGGC 60.608 60.000 0.00 0.00 41.52 5.36
2441 2443 1.002366 CGAGATCCTGTTTGCCGAAG 58.998 55.000 0.00 0.00 0.00 3.79
2450 2452 1.603802 TGTTTGCCGAAGAGAAGCAAG 59.396 47.619 0.00 0.00 46.30 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
164 165 2.545526 GCCGACACATTCATCCACATAG 59.454 50.000 0.00 0.00 0.00 2.23
181 182 4.636648 TGAAACAGAAGTAAAACAAGCCGA 59.363 37.500 0.00 0.00 0.00 5.54
216 217 2.462456 TGATTGCCCGCTCATCTATC 57.538 50.000 0.00 0.00 0.00 2.08
228 229 1.667724 CTGATGGACGAGTTGATTGCC 59.332 52.381 0.00 0.00 0.00 4.52
393 394 2.606519 CCGTCAAGGGTGGAGGGA 60.607 66.667 0.00 0.00 41.64 4.20
458 459 3.648545 GGTAAGGCAAGGTAGATCCAGAT 59.351 47.826 0.00 0.00 39.02 2.90
623 624 5.528043 TGACATTGTTGTTGTGCCTAATT 57.472 34.783 0.00 0.00 35.79 1.40
736 737 2.434185 TGCGAGCAGGTTTAGGCG 60.434 61.111 0.00 0.00 34.54 5.52
756 757 0.105709 TGTCCACCACCTCTGTCTCA 60.106 55.000 0.00 0.00 0.00 3.27
903 904 1.074471 CCTTAGCCTGAGCCCCCTA 60.074 63.158 0.00 0.00 41.25 3.53
1115 1116 5.313712 TCAAACCCTTTCTACTGTTCATCC 58.686 41.667 0.00 0.00 0.00 3.51
1124 1125 4.454504 TCGCAATCTTCAAACCCTTTCTAC 59.545 41.667 0.00 0.00 0.00 2.59
1499 1500 1.243230 TCCCCCACCTCCCCTATCTT 61.243 60.000 0.00 0.00 0.00 2.40
1597 1598 2.360475 GTGAGGCCAACCCTGCTC 60.360 66.667 5.01 0.00 46.60 4.26
1604 1605 2.034221 GGTGGAGGTGAGGCCAAC 59.966 66.667 5.01 2.02 40.61 3.77
1605 1606 3.256960 GGGTGGAGGTGAGGCCAA 61.257 66.667 5.01 0.00 40.61 4.52
1653 1655 8.976986 AATAATTTCTTTGCAATCTCAGACAC 57.023 30.769 0.00 0.00 0.00 3.67
1686 1688 2.457366 TTCCCTTTTCGCTCAGTCTC 57.543 50.000 0.00 0.00 0.00 3.36
1718 1720 3.894547 TTCCGGACCTGGCTTTCGC 62.895 63.158 1.83 0.00 0.00 4.70
1719 1721 2.033194 GTTCCGGACCTGGCTTTCG 61.033 63.158 1.83 0.00 0.00 3.46
1720 1722 0.322546 ATGTTCCGGACCTGGCTTTC 60.323 55.000 1.83 0.00 0.00 2.62
1721 1723 0.609131 CATGTTCCGGACCTGGCTTT 60.609 55.000 1.83 0.00 0.00 3.51
1722 1724 1.002134 CATGTTCCGGACCTGGCTT 60.002 57.895 1.83 0.00 0.00 4.35
1723 1725 2.671070 CATGTTCCGGACCTGGCT 59.329 61.111 1.83 0.00 0.00 4.75
1724 1726 3.134127 GCATGTTCCGGACCTGGC 61.134 66.667 1.83 0.85 0.00 4.85
1725 1727 1.746615 CAGCATGTTCCGGACCTGG 60.747 63.158 1.83 0.00 0.00 4.45
1726 1728 1.746615 CCAGCATGTTCCGGACCTG 60.747 63.158 1.83 2.79 0.00 4.00
1727 1729 2.224159 ACCAGCATGTTCCGGACCT 61.224 57.895 1.83 0.00 0.00 3.85
1728 1730 2.040544 CACCAGCATGTTCCGGACC 61.041 63.158 1.83 0.00 0.00 4.46
1729 1731 2.040544 CCACCAGCATGTTCCGGAC 61.041 63.158 1.83 0.00 0.00 4.79
1730 1732 2.350895 CCACCAGCATGTTCCGGA 59.649 61.111 0.00 0.00 0.00 5.14
1731 1733 2.751436 CCCACCAGCATGTTCCGG 60.751 66.667 0.00 0.00 0.00 5.14
1732 1734 2.751436 CCCCACCAGCATGTTCCG 60.751 66.667 0.00 0.00 0.00 4.30
1733 1735 1.858739 TACCCCCACCAGCATGTTCC 61.859 60.000 0.00 0.00 0.00 3.62
1734 1736 0.258774 ATACCCCCACCAGCATGTTC 59.741 55.000 0.00 0.00 0.00 3.18
1735 1737 0.033208 CATACCCCCACCAGCATGTT 60.033 55.000 0.00 0.00 0.00 2.71
1736 1738 1.614711 CATACCCCCACCAGCATGT 59.385 57.895 0.00 0.00 0.00 3.21
1737 1739 1.829533 GCATACCCCCACCAGCATG 60.830 63.158 0.00 0.00 0.00 4.06
1738 1740 2.315794 TGCATACCCCCACCAGCAT 61.316 57.895 0.00 0.00 0.00 3.79
1739 1741 2.938243 TGCATACCCCCACCAGCA 60.938 61.111 0.00 0.00 0.00 4.41
1740 1742 2.440247 GTGCATACCCCCACCAGC 60.440 66.667 0.00 0.00 0.00 4.85
1741 1743 2.124736 CGTGCATACCCCCACCAG 60.125 66.667 0.00 0.00 0.00 4.00
1742 1744 2.224877 TTCGTGCATACCCCCACCA 61.225 57.895 0.00 0.00 0.00 4.17
1743 1745 1.747745 GTTCGTGCATACCCCCACC 60.748 63.158 0.00 0.00 0.00 4.61
1744 1746 1.024579 CAGTTCGTGCATACCCCCAC 61.025 60.000 0.00 0.00 0.00 4.61
1745 1747 1.298340 CAGTTCGTGCATACCCCCA 59.702 57.895 0.00 0.00 0.00 4.96
1746 1748 1.451387 CCAGTTCGTGCATACCCCC 60.451 63.158 0.00 0.00 0.00 5.40
1747 1749 1.451387 CCCAGTTCGTGCATACCCC 60.451 63.158 0.00 0.00 0.00 4.95
1748 1750 1.451387 CCCCAGTTCGTGCATACCC 60.451 63.158 0.00 0.00 0.00 3.69
1749 1751 0.743345 GACCCCAGTTCGTGCATACC 60.743 60.000 0.00 0.00 0.00 2.73
1750 1752 1.082117 CGACCCCAGTTCGTGCATAC 61.082 60.000 0.00 0.00 0.00 2.39
1751 1753 1.216977 CGACCCCAGTTCGTGCATA 59.783 57.895 0.00 0.00 0.00 3.14
1752 1754 2.047274 CGACCCCAGTTCGTGCAT 60.047 61.111 0.00 0.00 0.00 3.96
1753 1755 3.220999 CTCGACCCCAGTTCGTGCA 62.221 63.158 0.00 0.00 0.00 4.57
1754 1756 2.432628 CTCGACCCCAGTTCGTGC 60.433 66.667 0.00 0.00 0.00 5.34
1755 1757 1.080705 GACTCGACCCCAGTTCGTG 60.081 63.158 0.00 0.00 0.00 4.35
1756 1758 1.524863 CTGACTCGACCCCAGTTCGT 61.525 60.000 0.00 0.00 0.00 3.85
1757 1759 1.213013 CTGACTCGACCCCAGTTCG 59.787 63.158 0.00 0.00 0.00 3.95
1758 1760 0.966920 TTCTGACTCGACCCCAGTTC 59.033 55.000 0.00 0.00 0.00 3.01
1759 1761 1.276421 CATTCTGACTCGACCCCAGTT 59.724 52.381 0.00 0.00 0.00 3.16
1760 1762 0.898320 CATTCTGACTCGACCCCAGT 59.102 55.000 0.00 0.00 0.00 4.00
1761 1763 1.186200 TCATTCTGACTCGACCCCAG 58.814 55.000 0.00 0.00 0.00 4.45
1762 1764 1.866015 ATCATTCTGACTCGACCCCA 58.134 50.000 0.00 0.00 0.00 4.96
1763 1765 2.990066 AATCATTCTGACTCGACCCC 57.010 50.000 0.00 0.00 0.00 4.95
1764 1766 4.093556 GTCAAAATCATTCTGACTCGACCC 59.906 45.833 0.00 0.00 37.17 4.46
1765 1767 4.690748 TGTCAAAATCATTCTGACTCGACC 59.309 41.667 5.45 0.00 40.14 4.79
1766 1768 5.845985 TGTCAAAATCATTCTGACTCGAC 57.154 39.130 5.45 0.00 40.14 4.20
1767 1769 6.293407 GGTTTGTCAAAATCATTCTGACTCGA 60.293 38.462 5.45 0.00 40.14 4.04
1768 1770 5.853282 GGTTTGTCAAAATCATTCTGACTCG 59.147 40.000 5.45 0.00 40.14 4.18
1769 1771 6.152379 GGGTTTGTCAAAATCATTCTGACTC 58.848 40.000 5.45 0.00 40.14 3.36
1770 1772 5.598005 TGGGTTTGTCAAAATCATTCTGACT 59.402 36.000 5.45 0.00 40.14 3.41
1771 1773 5.841810 TGGGTTTGTCAAAATCATTCTGAC 58.158 37.500 0.00 0.00 39.93 3.51
1772 1774 6.127225 TGTTGGGTTTGTCAAAATCATTCTGA 60.127 34.615 0.00 0.00 0.00 3.27
1773 1775 6.018832 GTGTTGGGTTTGTCAAAATCATTCTG 60.019 38.462 0.00 0.00 0.00 3.02
1774 1776 6.048509 GTGTTGGGTTTGTCAAAATCATTCT 58.951 36.000 0.00 0.00 0.00 2.40
1775 1777 5.051106 CGTGTTGGGTTTGTCAAAATCATTC 60.051 40.000 0.00 0.51 0.00 2.67
1776 1778 4.808364 CGTGTTGGGTTTGTCAAAATCATT 59.192 37.500 0.00 0.00 0.00 2.57
1777 1779 4.367450 CGTGTTGGGTTTGTCAAAATCAT 58.633 39.130 0.00 0.00 0.00 2.45
2006 2008 1.135689 GCAATTCCACGCTACCACTTG 60.136 52.381 0.00 0.00 0.00 3.16
2028 2030 4.299796 GCTGGTTCCCAAGCCCCA 62.300 66.667 0.00 0.00 30.80 4.96
2102 2104 4.497006 CCTGTCAAGCTTTGTTTCAGACAG 60.497 45.833 23.79 23.79 46.61 3.51
2103 2105 3.378112 CCTGTCAAGCTTTGTTTCAGACA 59.622 43.478 11.62 11.62 36.19 3.41
2108 2110 5.473504 TCCTATTCCTGTCAAGCTTTGTTTC 59.526 40.000 0.00 0.00 0.00 2.78
2131 2133 1.923356 TCCCCTTGAACCTTTGCATC 58.077 50.000 0.00 0.00 0.00 3.91
2168 2170 2.105821 CAACACAGTCCCTAACCTCCAA 59.894 50.000 0.00 0.00 0.00 3.53
2192 2194 2.045926 AGCTAGGCCACCGCTTTG 60.046 61.111 5.01 0.00 34.44 2.77
2206 2208 3.007831 CCTCTTTCTTCCAGAACAGAGCT 59.992 47.826 14.18 0.00 37.71 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.