Multiple sequence alignment - TraesCS2B01G294600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G294600 chr2B 100.000 4687 0 0 1 4687 411489773 411494459 0.000000e+00 8656
1 TraesCS2B01G294600 chr2B 97.273 110 3 0 739 848 236520452 236520561 2.230000e-43 187
2 TraesCS2B01G294600 chr2B 96.364 110 3 1 739 848 206294815 206294923 3.730000e-41 180
3 TraesCS2B01G294600 chr2B 93.421 76 4 1 856 931 411430499 411430573 1.380000e-20 111
4 TraesCS2B01G294600 chr2A 94.220 3720 179 24 975 4678 457944435 457940736 0.000000e+00 5646
5 TraesCS2B01G294600 chr2A 95.782 735 30 1 1 734 704737925 704737191 0.000000e+00 1184
6 TraesCS2B01G294600 chr2D 94.156 3713 176 21 979 4679 345827411 345831094 0.000000e+00 5616
7 TraesCS2B01G294600 chr2D 96.049 734 29 0 1 734 50129539 50128806 0.000000e+00 1195
8 TraesCS2B01G294600 chr2D 97.368 114 3 0 739 852 236137244 236137357 1.330000e-45 195
9 TraesCS2B01G294600 chr2D 94.118 119 7 0 739 857 500665006 500664888 1.040000e-41 182
10 TraesCS2B01G294600 chr2D 94.068 118 6 1 739 856 500589749 500589633 1.340000e-40 178
11 TraesCS2B01G294600 chr7D 96.458 734 26 0 1 734 18553318 18552585 0.000000e+00 1212
12 TraesCS2B01G294600 chr1D 96.185 734 28 0 1 734 278101562 278100829 0.000000e+00 1201
13 TraesCS2B01G294600 chr1D 88.679 106 12 0 4380 4485 366243823 366243718 3.810000e-26 130
14 TraesCS2B01G294600 chr4D 96.049 734 29 0 1 734 486564865 486564132 0.000000e+00 1195
15 TraesCS2B01G294600 chr4D 95.777 734 31 0 1 734 481887941 481888674 0.000000e+00 1184
16 TraesCS2B01G294600 chr5D 95.777 734 31 0 1 734 495795319 495794586 0.000000e+00 1184
17 TraesCS2B01G294600 chr3D 95.777 734 30 1 1 734 431337752 431338484 0.000000e+00 1182
18 TraesCS2B01G294600 chr3D 95.640 734 32 0 1 734 553936442 553935709 0.000000e+00 1179
19 TraesCS2B01G294600 chr3D 89.623 106 11 0 4380 4485 447571849 447571954 8.180000e-28 135
20 TraesCS2B01G294600 chr7B 97.248 109 3 0 739 847 681765941 681766049 8.010000e-43 185
21 TraesCS2B01G294600 chr3A 97.248 109 2 1 739 847 490429104 490428997 2.880000e-42 183
22 TraesCS2B01G294600 chr3A 87.611 113 14 0 4373 4485 533074684 533074796 1.060000e-26 132
23 TraesCS2B01G294600 chr6A 95.614 114 4 1 735 848 508055912 508056024 1.040000e-41 182
24 TraesCS2B01G294600 chr5A 92.857 126 8 1 739 863 619773168 619773043 1.040000e-41 182
25 TraesCS2B01G294600 chr5A 90.291 103 9 1 4384 4485 475272479 475272581 2.940000e-27 134
26 TraesCS2B01G294600 chr5A 88.350 103 12 0 4383 4485 457089335 457089233 1.770000e-24 124
27 TraesCS2B01G294600 chr4B 86.555 119 14 2 4367 4485 71346194 71346310 3.810000e-26 130
28 TraesCS2B01G294600 chr4A 86.555 119 13 3 4367 4485 137186997 137187112 1.370000e-25 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G294600 chr2B 411489773 411494459 4686 False 8656 8656 100.000 1 4687 1 chr2B.!!$F4 4686
1 TraesCS2B01G294600 chr2A 457940736 457944435 3699 True 5646 5646 94.220 975 4678 1 chr2A.!!$R1 3703
2 TraesCS2B01G294600 chr2A 704737191 704737925 734 True 1184 1184 95.782 1 734 1 chr2A.!!$R2 733
3 TraesCS2B01G294600 chr2D 345827411 345831094 3683 False 5616 5616 94.156 979 4679 1 chr2D.!!$F2 3700
4 TraesCS2B01G294600 chr2D 50128806 50129539 733 True 1195 1195 96.049 1 734 1 chr2D.!!$R1 733
5 TraesCS2B01G294600 chr7D 18552585 18553318 733 True 1212 1212 96.458 1 734 1 chr7D.!!$R1 733
6 TraesCS2B01G294600 chr1D 278100829 278101562 733 True 1201 1201 96.185 1 734 1 chr1D.!!$R1 733
7 TraesCS2B01G294600 chr4D 486564132 486564865 733 True 1195 1195 96.049 1 734 1 chr4D.!!$R1 733
8 TraesCS2B01G294600 chr4D 481887941 481888674 733 False 1184 1184 95.777 1 734 1 chr4D.!!$F1 733
9 TraesCS2B01G294600 chr5D 495794586 495795319 733 True 1184 1184 95.777 1 734 1 chr5D.!!$R1 733
10 TraesCS2B01G294600 chr3D 431337752 431338484 732 False 1182 1182 95.777 1 734 1 chr3D.!!$F1 733
11 TraesCS2B01G294600 chr3D 553935709 553936442 733 True 1179 1179 95.640 1 734 1 chr3D.!!$R1 733

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
867 869 0.036294 CGGTGTTCTTCTTCTCCCCC 60.036 60.0 0.00 0.0 0.00 5.40 F
941 943 0.178961 AGGGCCTCACAGTTTTTCCC 60.179 55.0 0.00 0.0 0.00 3.97 F
1633 1635 0.762461 GAGGAGGATGGGTGAGGAGG 60.762 65.0 0.00 0.0 0.00 4.30 F
3112 3123 0.251165 TTTAGGAGGGCTGGCAACAC 60.251 55.0 2.88 0.0 46.17 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2570 2581 0.737715 CTTTCTTCAGCCCCTCGTCG 60.738 60.000 0.0 0.0 0.00 5.12 R
2573 2584 1.731720 CTTCTTTCTTCAGCCCCTCG 58.268 55.000 0.0 0.0 0.00 4.63 R
3197 3208 0.387565 ACAACCCATGTTTCGCCAAC 59.612 50.000 0.0 0.0 40.06 3.77 R
4580 4595 1.355381 TGCTGGACTTTCCACCATGAT 59.645 47.619 0.0 0.0 42.67 2.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
209 211 7.124573 AGGTGAGCATTGACAATATACACTA 57.875 36.000 19.93 0.00 0.00 2.74
287 289 3.261137 TGCCATTTTCAGGATTGCATTGA 59.739 39.130 0.00 0.00 0.00 2.57
365 367 0.044855 AGGGGGAGGAAGCACTACAT 59.955 55.000 0.00 0.00 0.00 2.29
383 385 3.424703 ACATAAGCCAGAATGTGCTTGT 58.575 40.909 6.98 0.00 46.79 3.16
391 393 2.026641 AGAATGTGCTTGTTGCTGTGT 58.973 42.857 0.00 0.00 43.37 3.72
478 480 1.821136 TCACTGACAGCATGAGTCGAT 59.179 47.619 1.25 2.72 39.69 3.59
489 491 3.556633 GCATGAGTCGATCTGATGGGATT 60.557 47.826 13.21 0.00 38.04 3.01
569 571 6.895756 GGTATTCTTCCACCCTTTAGGAAAAT 59.104 38.462 0.00 0.00 42.91 1.82
699 701 6.407202 TGGAGCTCTGAAGAATAGGTTTAAC 58.593 40.000 14.64 0.00 0.00 2.01
727 729 0.038166 TCAGAAGCCATTCCACCCAC 59.962 55.000 0.00 0.00 35.94 4.61
734 736 0.112218 CCATTCCACCCACACTCCAA 59.888 55.000 0.00 0.00 0.00 3.53
735 737 1.538047 CATTCCACCCACACTCCAAG 58.462 55.000 0.00 0.00 0.00 3.61
736 738 1.149101 ATTCCACCCACACTCCAAGT 58.851 50.000 0.00 0.00 0.00 3.16
737 739 0.923358 TTCCACCCACACTCCAAGTT 59.077 50.000 0.00 0.00 0.00 2.66
738 740 1.809133 TCCACCCACACTCCAAGTTA 58.191 50.000 0.00 0.00 0.00 2.24
739 741 2.128535 TCCACCCACACTCCAAGTTAA 58.871 47.619 0.00 0.00 0.00 2.01
740 742 2.158726 TCCACCCACACTCCAAGTTAAC 60.159 50.000 0.00 0.00 0.00 2.01
741 743 2.227194 CACCCACACTCCAAGTTAACC 58.773 52.381 0.88 0.00 0.00 2.85
742 744 1.847737 ACCCACACTCCAAGTTAACCA 59.152 47.619 0.88 0.00 0.00 3.67
743 745 2.242708 ACCCACACTCCAAGTTAACCAA 59.757 45.455 0.88 0.00 0.00 3.67
744 746 3.292460 CCCACACTCCAAGTTAACCAAA 58.708 45.455 0.88 0.00 0.00 3.28
745 747 3.067601 CCCACACTCCAAGTTAACCAAAC 59.932 47.826 0.88 0.00 38.46 2.93
757 759 6.500684 AGTTAACCAAACTATGTGCATCTG 57.499 37.500 0.88 0.00 46.85 2.90
758 760 6.237901 AGTTAACCAAACTATGTGCATCTGA 58.762 36.000 0.88 0.00 46.85 3.27
759 761 6.372659 AGTTAACCAAACTATGTGCATCTGAG 59.627 38.462 0.88 0.00 46.85 3.35
760 762 3.614092 ACCAAACTATGTGCATCTGAGG 58.386 45.455 0.00 0.00 0.00 3.86
761 763 3.009473 ACCAAACTATGTGCATCTGAGGT 59.991 43.478 0.00 0.00 0.00 3.85
762 764 4.012374 CCAAACTATGTGCATCTGAGGTT 58.988 43.478 0.00 0.00 0.00 3.50
763 765 4.460382 CCAAACTATGTGCATCTGAGGTTT 59.540 41.667 0.00 0.00 0.00 3.27
764 766 5.047802 CCAAACTATGTGCATCTGAGGTTTT 60.048 40.000 0.00 0.00 0.00 2.43
765 767 6.449698 CAAACTATGTGCATCTGAGGTTTTT 58.550 36.000 0.00 0.00 0.00 1.94
779 781 3.804490 TTTTTGGCCTGCATCCCC 58.196 55.556 3.32 0.00 0.00 4.81
780 782 1.158227 TTTTTGGCCTGCATCCCCT 59.842 52.632 3.32 0.00 0.00 4.79
781 783 0.904394 TTTTTGGCCTGCATCCCCTC 60.904 55.000 3.32 0.00 0.00 4.30
782 784 2.091640 TTTTGGCCTGCATCCCCTCA 62.092 55.000 3.32 0.00 0.00 3.86
783 785 2.091640 TTTGGCCTGCATCCCCTCAA 62.092 55.000 3.32 0.00 0.00 3.02
784 786 2.091640 TTGGCCTGCATCCCCTCAAA 62.092 55.000 3.32 0.00 0.00 2.69
785 787 2.054453 GGCCTGCATCCCCTCAAAC 61.054 63.158 0.00 0.00 0.00 2.93
786 788 2.054453 GCCTGCATCCCCTCAAACC 61.054 63.158 0.00 0.00 0.00 3.27
787 789 1.750399 CCTGCATCCCCTCAAACCG 60.750 63.158 0.00 0.00 0.00 4.44
788 790 1.750399 CTGCATCCCCTCAAACCGG 60.750 63.158 0.00 0.00 0.00 5.28
789 791 3.140814 GCATCCCCTCAAACCGGC 61.141 66.667 0.00 0.00 0.00 6.13
790 792 2.677228 CATCCCCTCAAACCGGCT 59.323 61.111 0.00 0.00 0.00 5.52
791 793 1.452108 CATCCCCTCAAACCGGCTC 60.452 63.158 0.00 0.00 0.00 4.70
792 794 1.923395 ATCCCCTCAAACCGGCTCA 60.923 57.895 0.00 0.00 0.00 4.26
793 795 1.497309 ATCCCCTCAAACCGGCTCAA 61.497 55.000 0.00 0.00 0.00 3.02
794 796 1.000896 CCCCTCAAACCGGCTCAAT 60.001 57.895 0.00 0.00 0.00 2.57
795 797 0.254747 CCCCTCAAACCGGCTCAATA 59.745 55.000 0.00 0.00 0.00 1.90
796 798 1.668419 CCCTCAAACCGGCTCAATAG 58.332 55.000 0.00 0.00 0.00 1.73
797 799 1.209504 CCCTCAAACCGGCTCAATAGA 59.790 52.381 0.00 0.00 0.00 1.98
798 800 2.555199 CCTCAAACCGGCTCAATAGAG 58.445 52.381 0.00 0.00 44.96 2.43
830 832 4.368003 CCAGGCTGGATTGGCAAT 57.632 55.556 29.96 13.54 40.96 3.56
831 833 1.820581 CCAGGCTGGATTGGCAATG 59.179 57.895 29.96 4.46 40.96 2.82
832 834 0.974010 CCAGGCTGGATTGGCAATGT 60.974 55.000 29.96 0.00 40.96 2.71
833 835 1.685803 CCAGGCTGGATTGGCAATGTA 60.686 52.381 29.96 5.15 40.96 2.29
834 836 2.101783 CAGGCTGGATTGGCAATGTAA 58.898 47.619 19.07 1.68 34.73 2.41
835 837 2.102578 AGGCTGGATTGGCAATGTAAC 58.897 47.619 19.07 2.53 34.73 2.50
836 838 1.136891 GGCTGGATTGGCAATGTAACC 59.863 52.381 19.07 12.84 0.00 2.85
837 839 1.824230 GCTGGATTGGCAATGTAACCA 59.176 47.619 19.07 16.75 0.00 3.67
843 845 2.783828 TGGCAATGTAACCAAACACG 57.216 45.000 0.00 0.00 31.46 4.49
844 846 1.269309 TGGCAATGTAACCAAACACGC 60.269 47.619 0.00 0.00 31.46 5.34
845 847 1.414378 GCAATGTAACCAAACACGCC 58.586 50.000 0.00 0.00 30.75 5.68
846 848 1.933052 GCAATGTAACCAAACACGCCC 60.933 52.381 0.00 0.00 30.75 6.13
847 849 1.611491 CAATGTAACCAAACACGCCCT 59.389 47.619 0.00 0.00 30.75 5.19
848 850 1.530323 ATGTAACCAAACACGCCCTC 58.470 50.000 0.00 0.00 30.75 4.30
849 851 0.881159 TGTAACCAAACACGCCCTCG 60.881 55.000 0.00 0.00 42.43 4.63
850 852 1.301874 TAACCAAACACGCCCTCGG 60.302 57.895 0.00 0.00 40.69 4.63
851 853 2.042404 TAACCAAACACGCCCTCGGT 62.042 55.000 0.00 0.00 40.69 4.69
852 854 3.353836 CCAAACACGCCCTCGGTG 61.354 66.667 0.00 0.00 40.69 4.94
854 856 2.184167 CAAACACGCCCTCGGTGTT 61.184 57.895 4.60 4.60 44.78 3.32
855 857 1.890510 AAACACGCCCTCGGTGTTC 60.891 57.895 10.33 0.00 44.78 3.18
856 858 2.319890 AAACACGCCCTCGGTGTTCT 62.320 55.000 10.33 0.24 44.78 3.01
857 859 2.030562 CACGCCCTCGGTGTTCTT 59.969 61.111 0.00 0.00 44.78 2.52
858 860 2.027625 CACGCCCTCGGTGTTCTTC 61.028 63.158 0.00 0.00 44.78 2.87
859 861 2.207924 ACGCCCTCGGTGTTCTTCT 61.208 57.895 0.00 0.00 44.78 2.85
860 862 1.004918 CGCCCTCGGTGTTCTTCTT 60.005 57.895 0.00 0.00 0.00 2.52
861 863 1.014564 CGCCCTCGGTGTTCTTCTTC 61.015 60.000 0.00 0.00 0.00 2.87
862 864 0.321996 GCCCTCGGTGTTCTTCTTCT 59.678 55.000 0.00 0.00 0.00 2.85
863 865 1.673329 GCCCTCGGTGTTCTTCTTCTC 60.673 57.143 0.00 0.00 0.00 2.87
864 866 1.066787 CCCTCGGTGTTCTTCTTCTCC 60.067 57.143 0.00 0.00 0.00 3.71
865 867 1.066787 CCTCGGTGTTCTTCTTCTCCC 60.067 57.143 0.00 0.00 0.00 4.30
866 868 0.974383 TCGGTGTTCTTCTTCTCCCC 59.026 55.000 0.00 0.00 0.00 4.81
867 869 0.036294 CGGTGTTCTTCTTCTCCCCC 60.036 60.000 0.00 0.00 0.00 5.40
868 870 1.363246 GGTGTTCTTCTTCTCCCCCT 58.637 55.000 0.00 0.00 0.00 4.79
869 871 1.003696 GGTGTTCTTCTTCTCCCCCTG 59.996 57.143 0.00 0.00 0.00 4.45
870 872 1.700186 GTGTTCTTCTTCTCCCCCTGT 59.300 52.381 0.00 0.00 0.00 4.00
871 873 2.106684 GTGTTCTTCTTCTCCCCCTGTT 59.893 50.000 0.00 0.00 0.00 3.16
872 874 2.372172 TGTTCTTCTTCTCCCCCTGTTC 59.628 50.000 0.00 0.00 0.00 3.18
873 875 2.640332 GTTCTTCTTCTCCCCCTGTTCT 59.360 50.000 0.00 0.00 0.00 3.01
874 876 2.991580 TCTTCTTCTCCCCCTGTTCTT 58.008 47.619 0.00 0.00 0.00 2.52
875 877 2.907042 TCTTCTTCTCCCCCTGTTCTTC 59.093 50.000 0.00 0.00 0.00 2.87
876 878 2.723530 TCTTCTCCCCCTGTTCTTCT 57.276 50.000 0.00 0.00 0.00 2.85
877 879 2.541466 TCTTCTCCCCCTGTTCTTCTC 58.459 52.381 0.00 0.00 0.00 2.87
878 880 2.112691 TCTTCTCCCCCTGTTCTTCTCT 59.887 50.000 0.00 0.00 0.00 3.10
879 881 1.944177 TCTCCCCCTGTTCTTCTCTG 58.056 55.000 0.00 0.00 0.00 3.35
880 882 1.433199 TCTCCCCCTGTTCTTCTCTGA 59.567 52.381 0.00 0.00 0.00 3.27
881 883 2.045047 TCTCCCCCTGTTCTTCTCTGAT 59.955 50.000 0.00 0.00 0.00 2.90
882 884 2.433970 CTCCCCCTGTTCTTCTCTGATC 59.566 54.545 0.00 0.00 0.00 2.92
883 885 1.488393 CCCCCTGTTCTTCTCTGATCC 59.512 57.143 0.00 0.00 0.00 3.36
884 886 1.488393 CCCCTGTTCTTCTCTGATCCC 59.512 57.143 0.00 0.00 0.00 3.85
885 887 1.488393 CCCTGTTCTTCTCTGATCCCC 59.512 57.143 0.00 0.00 0.00 4.81
886 888 2.476199 CCTGTTCTTCTCTGATCCCCT 58.524 52.381 0.00 0.00 0.00 4.79
887 889 2.433970 CCTGTTCTTCTCTGATCCCCTC 59.566 54.545 0.00 0.00 0.00 4.30
888 890 3.373830 CTGTTCTTCTCTGATCCCCTCT 58.626 50.000 0.00 0.00 0.00 3.69
889 891 3.370104 TGTTCTTCTCTGATCCCCTCTC 58.630 50.000 0.00 0.00 0.00 3.20
890 892 3.245766 TGTTCTTCTCTGATCCCCTCTCA 60.246 47.826 0.00 0.00 0.00 3.27
891 893 3.765432 TCTTCTCTGATCCCCTCTCAA 57.235 47.619 0.00 0.00 0.00 3.02
892 894 4.066578 TCTTCTCTGATCCCCTCTCAAA 57.933 45.455 0.00 0.00 0.00 2.69
893 895 3.772025 TCTTCTCTGATCCCCTCTCAAAC 59.228 47.826 0.00 0.00 0.00 2.93
894 896 2.472029 TCTCTGATCCCCTCTCAAACC 58.528 52.381 0.00 0.00 0.00 3.27
895 897 1.488393 CTCTGATCCCCTCTCAAACCC 59.512 57.143 0.00 0.00 0.00 4.11
896 898 1.081174 TCTGATCCCCTCTCAAACCCT 59.919 52.381 0.00 0.00 0.00 4.34
897 899 2.317900 TCTGATCCCCTCTCAAACCCTA 59.682 50.000 0.00 0.00 0.00 3.53
898 900 3.115390 CTGATCCCCTCTCAAACCCTAA 58.885 50.000 0.00 0.00 0.00 2.69
899 901 2.844348 TGATCCCCTCTCAAACCCTAAC 59.156 50.000 0.00 0.00 0.00 2.34
900 902 2.735259 TCCCCTCTCAAACCCTAACT 57.265 50.000 0.00 0.00 0.00 2.24
901 903 3.858696 TCCCCTCTCAAACCCTAACTA 57.141 47.619 0.00 0.00 0.00 2.24
902 904 4.363546 TCCCCTCTCAAACCCTAACTAT 57.636 45.455 0.00 0.00 0.00 2.12
903 905 4.706616 TCCCCTCTCAAACCCTAACTATT 58.293 43.478 0.00 0.00 0.00 1.73
904 906 4.473559 TCCCCTCTCAAACCCTAACTATTG 59.526 45.833 0.00 0.00 0.00 1.90
905 907 4.473559 CCCCTCTCAAACCCTAACTATTGA 59.526 45.833 0.00 0.00 0.00 2.57
906 908 5.132816 CCCCTCTCAAACCCTAACTATTGAT 59.867 44.000 0.00 0.00 31.92 2.57
907 909 6.353951 CCCCTCTCAAACCCTAACTATTGATT 60.354 42.308 0.00 0.00 31.92 2.57
908 910 7.119387 CCCTCTCAAACCCTAACTATTGATTT 58.881 38.462 0.00 0.00 31.92 2.17
909 911 7.067494 CCCTCTCAAACCCTAACTATTGATTTG 59.933 40.741 0.00 0.00 31.92 2.32
910 912 7.611855 CCTCTCAAACCCTAACTATTGATTTGT 59.388 37.037 0.00 0.00 31.92 2.83
911 913 8.335532 TCTCAAACCCTAACTATTGATTTGTG 57.664 34.615 0.00 0.00 31.92 3.33
912 914 8.160765 TCTCAAACCCTAACTATTGATTTGTGA 58.839 33.333 0.00 0.00 31.92 3.58
913 915 8.335532 TCAAACCCTAACTATTGATTTGTGAG 57.664 34.615 0.00 0.00 0.00 3.51
914 916 8.160765 TCAAACCCTAACTATTGATTTGTGAGA 58.839 33.333 0.00 0.00 0.00 3.27
915 917 7.923414 AACCCTAACTATTGATTTGTGAGAC 57.077 36.000 0.00 0.00 0.00 3.36
916 918 7.259088 ACCCTAACTATTGATTTGTGAGACT 57.741 36.000 0.00 0.00 0.00 3.24
917 919 8.375493 ACCCTAACTATTGATTTGTGAGACTA 57.625 34.615 0.00 0.00 0.00 2.59
918 920 8.822805 ACCCTAACTATTGATTTGTGAGACTAA 58.177 33.333 0.00 0.00 0.00 2.24
919 921 9.099454 CCCTAACTATTGATTTGTGAGACTAAC 57.901 37.037 0.00 0.00 0.00 2.34
920 922 9.099454 CCTAACTATTGATTTGTGAGACTAACC 57.901 37.037 0.00 0.00 0.00 2.85
921 923 7.923414 AACTATTGATTTGTGAGACTAACCC 57.077 36.000 0.00 0.00 0.00 4.11
922 924 7.016153 ACTATTGATTTGTGAGACTAACCCA 57.984 36.000 0.00 0.00 0.00 4.51
923 925 7.106239 ACTATTGATTTGTGAGACTAACCCAG 58.894 38.462 0.00 0.00 0.00 4.45
924 926 4.286297 TGATTTGTGAGACTAACCCAGG 57.714 45.455 0.00 0.00 0.00 4.45
925 927 3.009033 TGATTTGTGAGACTAACCCAGGG 59.991 47.826 2.85 2.85 0.00 4.45
926 928 0.690762 TTGTGAGACTAACCCAGGGC 59.309 55.000 4.91 0.00 0.00 5.19
927 929 1.198759 TGTGAGACTAACCCAGGGCC 61.199 60.000 4.91 0.00 0.00 5.80
928 930 0.910088 GTGAGACTAACCCAGGGCCT 60.910 60.000 4.91 0.00 0.00 5.19
929 931 0.617820 TGAGACTAACCCAGGGCCTC 60.618 60.000 0.95 5.50 0.00 4.70
930 932 0.617820 GAGACTAACCCAGGGCCTCA 60.618 60.000 0.95 0.00 0.00 3.86
931 933 0.910088 AGACTAACCCAGGGCCTCAC 60.910 60.000 0.95 0.00 0.00 3.51
932 934 1.151899 ACTAACCCAGGGCCTCACA 60.152 57.895 0.95 0.00 0.00 3.58
933 935 1.201429 ACTAACCCAGGGCCTCACAG 61.201 60.000 0.95 0.00 0.00 3.66
934 936 1.151899 TAACCCAGGGCCTCACAGT 60.152 57.895 0.95 0.00 0.00 3.55
935 937 0.770557 TAACCCAGGGCCTCACAGTT 60.771 55.000 0.95 7.66 0.00 3.16
936 938 1.655114 AACCCAGGGCCTCACAGTTT 61.655 55.000 0.95 0.00 0.00 2.66
937 939 1.153756 CCCAGGGCCTCACAGTTTT 59.846 57.895 0.95 0.00 0.00 2.43
938 940 0.469892 CCCAGGGCCTCACAGTTTTT 60.470 55.000 0.95 0.00 0.00 1.94
939 941 0.961753 CCAGGGCCTCACAGTTTTTC 59.038 55.000 0.95 0.00 0.00 2.29
940 942 0.961753 CAGGGCCTCACAGTTTTTCC 59.038 55.000 0.95 0.00 0.00 3.13
941 943 0.178961 AGGGCCTCACAGTTTTTCCC 60.179 55.000 0.00 0.00 0.00 3.97
942 944 0.178961 GGGCCTCACAGTTTTTCCCT 60.179 55.000 0.84 0.00 0.00 4.20
943 945 0.961753 GGCCTCACAGTTTTTCCCTG 59.038 55.000 0.00 0.00 36.01 4.45
944 946 1.692411 GCCTCACAGTTTTTCCCTGT 58.308 50.000 0.00 0.00 43.76 4.00
945 947 2.031870 GCCTCACAGTTTTTCCCTGTT 58.968 47.619 0.00 0.00 41.10 3.16
946 948 2.223805 GCCTCACAGTTTTTCCCTGTTG 60.224 50.000 0.00 0.00 41.10 3.33
947 949 2.362077 CCTCACAGTTTTTCCCTGTTGG 59.638 50.000 0.00 0.00 41.10 3.77
948 950 3.023832 CTCACAGTTTTTCCCTGTTGGT 58.976 45.455 0.00 0.00 41.10 3.67
949 951 3.020984 TCACAGTTTTTCCCTGTTGGTC 58.979 45.455 0.00 0.00 41.10 4.02
950 952 3.023832 CACAGTTTTTCCCTGTTGGTCT 58.976 45.455 0.00 0.00 41.10 3.85
951 953 3.023832 ACAGTTTTTCCCTGTTGGTCTG 58.976 45.455 0.00 0.00 40.14 3.51
952 954 3.287222 CAGTTTTTCCCTGTTGGTCTGA 58.713 45.455 0.00 0.00 34.77 3.27
953 955 3.699038 CAGTTTTTCCCTGTTGGTCTGAA 59.301 43.478 0.00 0.00 34.77 3.02
954 956 4.342092 CAGTTTTTCCCTGTTGGTCTGAAT 59.658 41.667 0.00 0.00 34.77 2.57
955 957 4.962362 AGTTTTTCCCTGTTGGTCTGAATT 59.038 37.500 0.00 0.00 34.77 2.17
956 958 5.425217 AGTTTTTCCCTGTTGGTCTGAATTT 59.575 36.000 0.00 0.00 34.77 1.82
957 959 5.529581 TTTTCCCTGTTGGTCTGAATTTC 57.470 39.130 0.00 0.00 34.77 2.17
958 960 2.778299 TCCCTGTTGGTCTGAATTTCG 58.222 47.619 0.00 0.00 34.77 3.46
959 961 1.812571 CCCTGTTGGTCTGAATTTCGG 59.187 52.381 0.00 0.00 0.00 4.30
960 962 2.504367 CCTGTTGGTCTGAATTTCGGT 58.496 47.619 5.17 0.00 0.00 4.69
961 963 2.226437 CCTGTTGGTCTGAATTTCGGTG 59.774 50.000 5.17 0.00 0.00 4.94
962 964 3.138304 CTGTTGGTCTGAATTTCGGTGA 58.862 45.455 5.17 0.00 0.00 4.02
963 965 2.875933 TGTTGGTCTGAATTTCGGTGAC 59.124 45.455 5.17 6.75 0.00 3.67
964 966 2.875933 GTTGGTCTGAATTTCGGTGACA 59.124 45.455 5.17 1.23 0.00 3.58
965 967 2.766313 TGGTCTGAATTTCGGTGACAG 58.234 47.619 5.17 0.00 0.00 3.51
966 968 2.104111 TGGTCTGAATTTCGGTGACAGT 59.896 45.455 5.17 0.00 0.00 3.55
967 969 2.737252 GGTCTGAATTTCGGTGACAGTC 59.263 50.000 5.17 0.00 0.00 3.51
968 970 2.737252 GTCTGAATTTCGGTGACAGTCC 59.263 50.000 5.17 0.00 0.00 3.85
969 971 2.632996 TCTGAATTTCGGTGACAGTCCT 59.367 45.455 5.17 0.00 0.00 3.85
970 972 3.830178 TCTGAATTTCGGTGACAGTCCTA 59.170 43.478 5.17 0.00 0.00 2.94
971 973 4.082190 TCTGAATTTCGGTGACAGTCCTAG 60.082 45.833 5.17 0.00 0.00 3.02
972 974 3.576982 TGAATTTCGGTGACAGTCCTAGT 59.423 43.478 0.00 0.00 0.00 2.57
973 975 3.870633 ATTTCGGTGACAGTCCTAGTC 57.129 47.619 0.00 0.00 36.55 2.59
974 976 2.581216 TTCGGTGACAGTCCTAGTCT 57.419 50.000 0.00 0.00 36.94 3.24
975 977 1.822506 TCGGTGACAGTCCTAGTCTG 58.177 55.000 0.00 9.64 36.94 3.51
976 978 0.811915 CGGTGACAGTCCTAGTCTGG 59.188 60.000 14.00 0.00 37.25 3.86
977 979 1.887088 CGGTGACAGTCCTAGTCTGGT 60.887 57.143 14.00 0.00 37.25 4.00
980 982 1.711375 TGACAGTCCTAGTCTGGTCCT 59.289 52.381 14.00 0.00 37.25 3.85
983 985 2.096248 CAGTCCTAGTCTGGTCCTGTC 58.904 57.143 4.79 0.00 0.00 3.51
1010 1012 0.901827 TCGTCACATATGGCTGTGGT 59.098 50.000 7.80 0.00 45.29 4.16
1201 1203 1.004440 GAGGATATGTGGAGCCCGC 60.004 63.158 0.00 0.00 34.12 6.13
1230 1232 2.575993 CTGAGAGCCCACCTCGTG 59.424 66.667 0.00 0.00 45.54 4.35
1415 1417 2.771372 AGGAGGAGGAAGAAGATGAAGC 59.229 50.000 0.00 0.00 0.00 3.86
1501 1503 1.685765 ACCACTGCGGCTATGGAGA 60.686 57.895 23.98 0.00 39.03 3.71
1633 1635 0.762461 GAGGAGGATGGGTGAGGAGG 60.762 65.000 0.00 0.00 0.00 4.30
1698 1700 1.884926 CGAGGAGCGGCTGATTTCC 60.885 63.158 7.50 1.39 36.03 3.13
1731 1733 1.021390 CATGGTTGGTGGCTCTCGTC 61.021 60.000 0.00 0.00 0.00 4.20
1733 1735 3.112709 GTTGGTGGCTCTCGTCGC 61.113 66.667 0.00 0.00 0.00 5.19
1885 1887 4.000331 CTGTCTTGATTGGTCTGACAGT 58.000 45.455 10.38 0.00 43.37 3.55
1888 1890 4.040829 TGTCTTGATTGGTCTGACAGTGAT 59.959 41.667 10.38 0.00 35.38 3.06
1889 1891 4.391216 GTCTTGATTGGTCTGACAGTGATG 59.609 45.833 10.38 0.00 32.68 3.07
1890 1892 4.284234 TCTTGATTGGTCTGACAGTGATGA 59.716 41.667 10.38 0.00 0.00 2.92
1891 1893 4.198028 TGATTGGTCTGACAGTGATGAG 57.802 45.455 10.38 0.00 0.00 2.90
1895 1897 2.297315 TGGTCTGACAGTGATGAGTGAC 59.703 50.000 10.38 0.00 0.00 3.67
1912 1918 9.817365 GATGAGTGACCATATTAATTTCATTCG 57.183 33.333 0.00 0.00 0.00 3.34
1937 1943 8.122330 CGTGCTATCACTTTTGCAAGATTAATA 58.878 33.333 0.00 0.00 40.99 0.98
1938 1944 9.443283 GTGCTATCACTTTTGCAAGATTAATAG 57.557 33.333 0.00 7.41 40.03 1.73
1939 1945 9.177608 TGCTATCACTTTTGCAAGATTAATAGT 57.822 29.630 0.00 0.00 33.72 2.12
1985 1993 7.488471 CCGACTTAGATCGAAGTGACTTTTATT 59.512 37.037 23.72 0.00 45.13 1.40
1992 2000 9.930693 AGATCGAAGTGACTTTTATTTACTTCT 57.069 29.630 0.00 0.00 42.96 2.85
2086 2095 6.590068 AGTTATTGATCAACAGAGGATCCAG 58.410 40.000 15.82 5.90 40.32 3.86
2092 2101 0.908198 AACAGAGGATCCAGGTCAGC 59.092 55.000 15.82 0.00 33.66 4.26
2111 2120 3.314635 CAGCTTGATTTGCTCCACTATCC 59.685 47.826 0.00 0.00 38.92 2.59
2112 2121 2.620585 GCTTGATTTGCTCCACTATCCC 59.379 50.000 0.00 0.00 0.00 3.85
2113 2122 3.889815 CTTGATTTGCTCCACTATCCCA 58.110 45.455 0.00 0.00 0.00 4.37
2114 2123 3.281727 TGATTTGCTCCACTATCCCAC 57.718 47.619 0.00 0.00 0.00 4.61
2115 2124 2.846206 TGATTTGCTCCACTATCCCACT 59.154 45.455 0.00 0.00 0.00 4.00
2116 2125 2.787473 TTTGCTCCACTATCCCACTG 57.213 50.000 0.00 0.00 0.00 3.66
2117 2126 1.656587 TTGCTCCACTATCCCACTGT 58.343 50.000 0.00 0.00 0.00 3.55
2118 2127 1.195115 TGCTCCACTATCCCACTGTC 58.805 55.000 0.00 0.00 0.00 3.51
2119 2128 1.273267 TGCTCCACTATCCCACTGTCT 60.273 52.381 0.00 0.00 0.00 3.41
2120 2129 2.024369 TGCTCCACTATCCCACTGTCTA 60.024 50.000 0.00 0.00 0.00 2.59
2129 2138 7.875041 CCACTATCCCACTGTCTATAAATTCTG 59.125 40.741 0.00 0.00 0.00 3.02
2153 2162 6.978659 TGTGGTATGAACTTCATCGTTATCTC 59.021 38.462 7.57 0.00 38.26 2.75
2165 2174 4.594123 TCGTTATCTCGGGATGCAAATA 57.406 40.909 8.42 0.00 33.71 1.40
2176 2185 7.556275 TCTCGGGATGCAAATAAAGAAAACTAT 59.444 33.333 0.00 0.00 0.00 2.12
2265 2275 6.560253 TCAAGTCTTTATGGTTTTGCTCTC 57.440 37.500 0.00 0.00 0.00 3.20
2312 2322 9.276590 CAATGGAGATTCTAACATGCTACATTA 57.723 33.333 0.00 0.00 37.88 1.90
2319 2329 7.539712 TTCTAACATGCTACATTACTTCTGC 57.460 36.000 0.00 0.00 0.00 4.26
2425 2436 3.490348 AGAAGAACAATGTCCAACCTGG 58.510 45.455 0.00 0.00 39.43 4.45
2573 2584 9.587461 GCTTCTCTAATTAAGATATTTTGCGAC 57.413 33.333 0.00 0.00 32.41 5.19
2633 2644 5.490357 AGAAATGGAGAAGAGAGGAATTCCA 59.510 40.000 26.22 2.36 38.90 3.53
2753 2764 3.794138 GCTTAAAACCAACAAGGGTGACG 60.794 47.826 0.00 0.00 41.32 4.35
2828 2839 4.679373 ATCGTTACTTCTGGAGATGCAT 57.321 40.909 0.00 0.00 0.00 3.96
2842 2853 4.543692 GAGATGCATGATTTGGGATTTCG 58.456 43.478 2.46 0.00 0.00 3.46
2862 2873 2.230660 GGCCAAATGCTAGGTCATACC 58.769 52.381 0.00 0.00 40.92 2.73
2948 2959 3.245371 TGAGGATGAAGAAAGGTGGCATT 60.245 43.478 0.00 0.00 0.00 3.56
3019 3030 5.221722 TGAGTGGACAGTATGAAAAAGCTCT 60.222 40.000 0.00 0.00 39.69 4.09
3022 3033 5.645497 GTGGACAGTATGAAAAAGCTCTCAT 59.355 40.000 9.94 9.94 39.69 2.90
3107 3118 2.106511 TGACATATTTAGGAGGGCTGGC 59.893 50.000 0.00 0.00 0.00 4.85
3112 3123 0.251165 TTTAGGAGGGCTGGCAACAC 60.251 55.000 2.88 0.00 46.17 3.32
3197 3208 4.706476 ACATTTCACATGGTACTTGATGGG 59.294 41.667 0.00 0.00 0.00 4.00
3254 3265 9.739276 AGAGATGTAATATGTGAGTTTGGAAAA 57.261 29.630 0.00 0.00 0.00 2.29
3272 3283 7.332433 TGGAAAAATAGGTTTACCTCCTACA 57.668 36.000 4.35 0.00 44.77 2.74
3275 3286 6.638021 AAAATAGGTTTACCTCCTACAGCT 57.362 37.500 4.35 0.00 44.77 4.24
3290 3301 5.661312 TCCTACAGCTATGACCTACAACATT 59.339 40.000 0.00 0.00 0.00 2.71
3308 3319 6.314400 ACAACATTTTGATGAATGCTTATGCC 59.686 34.615 0.00 0.00 39.97 4.40
3433 3444 2.175078 CGTCCGCGACTTCTCGAA 59.825 61.111 8.23 0.00 43.06 3.71
3474 3485 3.426695 GCAGATGGTTCGAAATGGACAAG 60.427 47.826 0.00 0.00 0.00 3.16
3578 3589 3.578688 CATTGCAGGAGTTGTAAAAGGC 58.421 45.455 0.00 0.00 34.97 4.35
3734 3745 3.012518 CCTTTGCAGTACTCATCCCTTG 58.987 50.000 0.00 0.00 0.00 3.61
3742 3753 6.099701 TGCAGTACTCATCCCTTGTGTTATAT 59.900 38.462 0.00 0.00 34.13 0.86
3748 3759 5.879763 TCATCCCTTGTGTTATATCATGGG 58.120 41.667 13.22 13.22 44.97 4.00
3795 3806 4.714632 TGTTCAGGGTTTTAGGTCAGAAG 58.285 43.478 0.00 0.00 0.00 2.85
3801 3812 4.080299 AGGGTTTTAGGTCAGAAGCTATGG 60.080 45.833 0.00 0.00 35.50 2.74
3802 3813 4.200092 GGTTTTAGGTCAGAAGCTATGGG 58.800 47.826 0.00 0.00 35.50 4.00
3823 3834 5.533154 TGGGGCGTGTTATTAATTCCATAAG 59.467 40.000 0.00 0.00 0.00 1.73
3824 3835 5.458015 GGGCGTGTTATTAATTCCATAAGC 58.542 41.667 0.00 0.00 0.00 3.09
3842 3853 6.595326 CCATAAGCATTCACTTTGACTGTCTA 59.405 38.462 9.51 0.00 30.75 2.59
3849 3860 7.623089 GCATTCACTTTGACTGTCTAACTGATC 60.623 40.741 9.51 0.00 30.75 2.92
3855 3866 5.588958 TGACTGTCTAACTGATCTCATGG 57.411 43.478 9.51 0.00 0.00 3.66
3869 3880 7.343057 ACTGATCTCATGGTCTGAATACACTTA 59.657 37.037 0.00 0.00 32.14 2.24
3900 3911 6.793680 GCATTTTAAATTGCTTGAGCTTGAAC 59.206 34.615 21.94 0.00 42.66 3.18
3921 3932 7.648142 TGAACAACATCCAGTTAAATGAACTC 58.352 34.615 4.10 0.00 45.81 3.01
3924 3935 6.549364 ACAACATCCAGTTAAATGAACTCCAA 59.451 34.615 4.10 0.00 45.81 3.53
3931 3942 8.482128 TCCAGTTAAATGAACTCCAAATGTTTT 58.518 29.630 4.10 0.00 45.81 2.43
3996 4007 7.120432 AGGCTTTCTGATGTTCAAACTAGAATC 59.880 37.037 0.00 0.00 30.48 2.52
4017 4028 6.645790 ATCTGATACATTGAAAAGATGCCC 57.354 37.500 0.00 0.00 0.00 5.36
4039 4050 6.460676 GCCCTTTGGATCTTATGAACAGATTG 60.461 42.308 0.00 0.00 30.70 2.67
4087 4099 2.171003 CCCCAGTTCCATCCAGTTTTC 58.829 52.381 0.00 0.00 0.00 2.29
4088 4100 2.225117 CCCCAGTTCCATCCAGTTTTCT 60.225 50.000 0.00 0.00 0.00 2.52
4126 4138 8.080417 CCGTCGTATAGAGGAAGATAATTTTGA 58.920 37.037 0.00 0.00 36.91 2.69
4297 4310 3.398954 TGCAAACAAAGACGTGAGAAC 57.601 42.857 0.00 0.00 0.00 3.01
4299 4312 2.363220 CAAACAAAGACGTGAGAACGC 58.637 47.619 0.00 0.00 36.44 4.84
4304 4317 1.148310 AAGACGTGAGAACGCCATTG 58.852 50.000 0.00 0.00 36.44 2.82
4314 4327 1.810151 GAACGCCATTGCTCCTACAAA 59.190 47.619 0.00 0.00 32.27 2.83
4322 4335 4.202202 CCATTGCTCCTACAAAAACACCAA 60.202 41.667 0.00 0.00 32.27 3.67
4363 4376 8.077991 CACAGTACACATTGAGATTGTTTTCAT 58.922 33.333 0.00 0.00 0.00 2.57
4372 4385 9.994432 CATTGAGATTGTTTTCATTCTACTACC 57.006 33.333 0.00 0.00 39.61 3.18
4373 4386 9.739276 ATTGAGATTGTTTTCATTCTACTACCA 57.261 29.630 0.00 0.00 39.61 3.25
4376 4389 6.884836 AGATTGTTTTCATTCTACTACCACCC 59.115 38.462 0.00 0.00 38.32 4.61
4378 4391 4.263594 TGTTTTCATTCTACTACCACCCCC 60.264 45.833 0.00 0.00 0.00 5.40
4400 4414 7.013655 CCCCCTTCACAAATATAAGATGTTCTG 59.986 40.741 0.00 0.00 0.00 3.02
4501 4515 7.617225 TCAGAAAAATATGAACGAAGGGAGTA 58.383 34.615 0.00 0.00 0.00 2.59
4502 4516 8.265055 TCAGAAAAATATGAACGAAGGGAGTAT 58.735 33.333 0.00 0.00 0.00 2.12
4513 4527 6.388435 ACGAAGGGAGTATATTACACAGTC 57.612 41.667 0.00 0.00 0.00 3.51
4514 4528 6.127793 ACGAAGGGAGTATATTACACAGTCT 58.872 40.000 0.00 0.00 0.00 3.24
4553 4567 5.103129 TGAATCCATATGGTTCCAGGGATTT 60.103 40.000 21.28 14.26 43.23 2.17
4558 4572 5.662657 CCATATGGTTCCAGGGATTTCTTTT 59.337 40.000 14.09 0.00 0.00 2.27
4580 4595 3.321396 TCTGTTGCCATTGATTCTTGCAA 59.679 39.130 0.00 0.00 39.42 4.08
4630 4645 7.395489 AGGCAGTTTTCATTGATGTAATCTTCT 59.605 33.333 0.00 0.00 45.81 2.85
4631 4646 7.699812 GGCAGTTTTCATTGATGTAATCTTCTC 59.300 37.037 0.00 0.00 45.81 2.87
4632 4647 8.239314 GCAGTTTTCATTGATGTAATCTTCTCA 58.761 33.333 0.00 0.00 45.81 3.27
4635 4650 9.565213 GTTTTCATTGATGTAATCTTCTCAAGG 57.435 33.333 0.00 0.00 45.81 3.61
4636 4651 8.868522 TTTCATTGATGTAATCTTCTCAAGGT 57.131 30.769 0.00 0.00 45.81 3.50
4637 4652 9.958180 TTTCATTGATGTAATCTTCTCAAGGTA 57.042 29.630 0.00 0.00 45.81 3.08
4668 4683 2.811431 TGCTACTCATTTCACCAAACCG 59.189 45.455 0.00 0.00 0.00 4.44
4679 4694 6.885952 TTTCACCAAACCGATCTATTTCAA 57.114 33.333 0.00 0.00 0.00 2.69
4680 4695 7.461182 TTTCACCAAACCGATCTATTTCAAT 57.539 32.000 0.00 0.00 0.00 2.57
4681 4696 6.677781 TCACCAAACCGATCTATTTCAATC 57.322 37.500 0.00 0.00 0.00 2.67
4682 4697 5.293324 TCACCAAACCGATCTATTTCAATCG 59.707 40.000 0.00 0.00 43.32 3.34
4683 4698 5.064707 CACCAAACCGATCTATTTCAATCGT 59.935 40.000 4.33 0.00 42.41 3.73
4684 4699 5.646360 ACCAAACCGATCTATTTCAATCGTT 59.354 36.000 4.33 0.00 42.41 3.85
4685 4700 6.150474 ACCAAACCGATCTATTTCAATCGTTT 59.850 34.615 4.33 3.01 42.41 3.60
4686 4701 7.027161 CCAAACCGATCTATTTCAATCGTTTT 58.973 34.615 4.33 0.15 39.55 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 2.303022 GTGAATGACCCTGAACCTCTGA 59.697 50.000 0.00 0.00 0.00 3.27
162 163 6.183361 CCTTGAAGTATGGATACCATCTTGGA 60.183 42.308 6.55 2.47 40.74 3.53
287 289 4.655649 TGACATGAGTACCATCTATTGCCT 59.344 41.667 0.00 0.00 31.94 4.75
383 385 5.368145 ACTTCAGATCAAAGTACACAGCAA 58.632 37.500 10.76 0.00 35.25 3.91
489 491 1.219664 CTTGCCGTCGGGGATGTTA 59.780 57.895 14.38 0.00 38.47 2.41
569 571 2.803956 ACTCGTTGAGATGGTACCTGA 58.196 47.619 14.36 0.00 33.32 3.86
699 701 2.953284 ATGGCTTCTGATCCAGGATG 57.047 50.000 6.70 0.00 35.57 3.51
727 729 6.668323 CACATAGTTTGGTTAACTTGGAGTG 58.332 40.000 5.42 1.89 44.73 3.51
735 737 6.403636 CCTCAGATGCACATAGTTTGGTTAAC 60.404 42.308 0.00 0.00 36.99 2.01
736 738 5.647658 CCTCAGATGCACATAGTTTGGTTAA 59.352 40.000 0.00 0.00 0.00 2.01
737 739 5.185454 CCTCAGATGCACATAGTTTGGTTA 58.815 41.667 0.00 0.00 0.00 2.85
738 740 4.012374 CCTCAGATGCACATAGTTTGGTT 58.988 43.478 0.00 0.00 0.00 3.67
739 741 3.009473 ACCTCAGATGCACATAGTTTGGT 59.991 43.478 0.00 0.00 0.00 3.67
740 742 3.614092 ACCTCAGATGCACATAGTTTGG 58.386 45.455 0.00 0.00 0.00 3.28
741 743 5.633830 AAACCTCAGATGCACATAGTTTG 57.366 39.130 0.00 0.00 0.00 2.93
742 744 6.655078 AAAAACCTCAGATGCACATAGTTT 57.345 33.333 0.00 0.00 0.00 2.66
762 764 0.904394 GAGGGGATGCAGGCCAAAAA 60.904 55.000 5.01 0.00 0.00 1.94
763 765 1.305213 GAGGGGATGCAGGCCAAAA 60.305 57.895 5.01 0.00 0.00 2.44
764 766 2.091640 TTGAGGGGATGCAGGCCAAA 62.092 55.000 5.01 0.00 0.00 3.28
765 767 2.091640 TTTGAGGGGATGCAGGCCAA 62.092 55.000 5.01 0.00 0.00 4.52
766 768 2.546643 TTTGAGGGGATGCAGGCCA 61.547 57.895 5.01 0.00 0.00 5.36
767 769 2.054453 GTTTGAGGGGATGCAGGCC 61.054 63.158 0.00 0.00 0.00 5.19
768 770 2.054453 GGTTTGAGGGGATGCAGGC 61.054 63.158 0.00 0.00 0.00 4.85
769 771 1.750399 CGGTTTGAGGGGATGCAGG 60.750 63.158 0.00 0.00 0.00 4.85
770 772 1.750399 CCGGTTTGAGGGGATGCAG 60.750 63.158 0.00 0.00 0.00 4.41
771 773 2.354729 CCGGTTTGAGGGGATGCA 59.645 61.111 0.00 0.00 0.00 3.96
772 774 3.140814 GCCGGTTTGAGGGGATGC 61.141 66.667 1.90 0.00 0.00 3.91
773 775 1.452108 GAGCCGGTTTGAGGGGATG 60.452 63.158 1.90 0.00 0.00 3.51
774 776 1.497309 TTGAGCCGGTTTGAGGGGAT 61.497 55.000 1.90 0.00 0.00 3.85
775 777 1.497309 ATTGAGCCGGTTTGAGGGGA 61.497 55.000 1.90 0.00 0.00 4.81
776 778 0.254747 TATTGAGCCGGTTTGAGGGG 59.745 55.000 1.90 0.00 0.00 4.79
777 779 1.209504 TCTATTGAGCCGGTTTGAGGG 59.790 52.381 1.90 0.00 0.00 4.30
778 780 2.555199 CTCTATTGAGCCGGTTTGAGG 58.445 52.381 1.90 0.00 33.12 3.86
813 815 0.974010 ACATTGCCAATCCAGCCTGG 60.974 55.000 3.69 3.69 39.43 4.45
814 816 1.766494 TACATTGCCAATCCAGCCTG 58.234 50.000 0.00 0.00 0.00 4.85
815 817 2.102578 GTTACATTGCCAATCCAGCCT 58.897 47.619 0.00 0.00 0.00 4.58
816 818 1.136891 GGTTACATTGCCAATCCAGCC 59.863 52.381 0.00 0.00 0.00 4.85
817 819 1.824230 TGGTTACATTGCCAATCCAGC 59.176 47.619 0.00 0.00 0.00 4.85
818 820 4.244862 GTTTGGTTACATTGCCAATCCAG 58.755 43.478 0.00 0.00 43.38 3.86
819 821 3.643320 TGTTTGGTTACATTGCCAATCCA 59.357 39.130 0.00 0.00 43.38 3.41
820 822 3.993736 GTGTTTGGTTACATTGCCAATCC 59.006 43.478 0.00 0.00 43.38 3.01
821 823 3.672867 CGTGTTTGGTTACATTGCCAATC 59.327 43.478 0.00 0.00 43.38 2.67
822 824 3.648009 CGTGTTTGGTTACATTGCCAAT 58.352 40.909 0.00 0.00 43.38 3.16
823 825 2.799917 GCGTGTTTGGTTACATTGCCAA 60.800 45.455 0.00 0.00 42.38 4.52
824 826 1.269309 GCGTGTTTGGTTACATTGCCA 60.269 47.619 0.00 0.00 0.00 4.92
825 827 1.414378 GCGTGTTTGGTTACATTGCC 58.586 50.000 0.00 0.00 0.00 4.52
826 828 1.414378 GGCGTGTTTGGTTACATTGC 58.586 50.000 0.00 0.00 33.88 3.56
827 829 1.611491 AGGGCGTGTTTGGTTACATTG 59.389 47.619 0.00 0.00 0.00 2.82
828 830 1.883926 GAGGGCGTGTTTGGTTACATT 59.116 47.619 0.00 0.00 0.00 2.71
829 831 1.530323 GAGGGCGTGTTTGGTTACAT 58.470 50.000 0.00 0.00 0.00 2.29
830 832 0.881159 CGAGGGCGTGTTTGGTTACA 60.881 55.000 0.00 0.00 0.00 2.41
831 833 1.571215 CCGAGGGCGTGTTTGGTTAC 61.571 60.000 0.00 0.00 35.23 2.50
832 834 1.301874 CCGAGGGCGTGTTTGGTTA 60.302 57.895 0.00 0.00 35.23 2.85
833 835 2.593436 CCGAGGGCGTGTTTGGTT 60.593 61.111 0.00 0.00 35.23 3.67
834 836 3.868985 ACCGAGGGCGTGTTTGGT 61.869 61.111 0.00 0.00 35.23 3.67
835 837 3.353836 CACCGAGGGCGTGTTTGG 61.354 66.667 0.00 0.00 35.23 3.28
836 838 2.113131 GAACACCGAGGGCGTGTTTG 62.113 60.000 9.47 0.00 39.77 2.93
837 839 1.890510 GAACACCGAGGGCGTGTTT 60.891 57.895 9.47 0.00 39.77 2.83
838 840 2.280592 GAACACCGAGGGCGTGTT 60.281 61.111 8.12 8.12 41.16 3.32
839 841 2.710724 GAAGAACACCGAGGGCGTGT 62.711 60.000 0.00 0.00 34.75 4.49
840 842 2.027625 GAAGAACACCGAGGGCGTG 61.028 63.158 0.00 0.00 35.23 5.34
841 843 1.755393 AAGAAGAACACCGAGGGCGT 61.755 55.000 0.00 0.00 35.23 5.68
842 844 1.004918 AAGAAGAACACCGAGGGCG 60.005 57.895 0.00 0.00 37.24 6.13
843 845 0.321996 AGAAGAAGAACACCGAGGGC 59.678 55.000 0.00 0.00 0.00 5.19
844 846 1.066787 GGAGAAGAAGAACACCGAGGG 60.067 57.143 0.00 0.00 0.00 4.30
845 847 1.066787 GGGAGAAGAAGAACACCGAGG 60.067 57.143 0.00 0.00 0.00 4.63
846 848 1.066787 GGGGAGAAGAAGAACACCGAG 60.067 57.143 0.00 0.00 0.00 4.63
847 849 0.974383 GGGGAGAAGAAGAACACCGA 59.026 55.000 0.00 0.00 0.00 4.69
848 850 0.036294 GGGGGAGAAGAAGAACACCG 60.036 60.000 0.00 0.00 0.00 4.94
849 851 1.003696 CAGGGGGAGAAGAAGAACACC 59.996 57.143 0.00 0.00 0.00 4.16
850 852 1.700186 ACAGGGGGAGAAGAAGAACAC 59.300 52.381 0.00 0.00 0.00 3.32
851 853 2.118403 ACAGGGGGAGAAGAAGAACA 57.882 50.000 0.00 0.00 0.00 3.18
852 854 2.640332 AGAACAGGGGGAGAAGAAGAAC 59.360 50.000 0.00 0.00 0.00 3.01
853 855 2.991580 AGAACAGGGGGAGAAGAAGAA 58.008 47.619 0.00 0.00 0.00 2.52
854 856 2.723530 AGAACAGGGGGAGAAGAAGA 57.276 50.000 0.00 0.00 0.00 2.87
855 857 2.909662 AGAAGAACAGGGGGAGAAGAAG 59.090 50.000 0.00 0.00 0.00 2.85
856 858 2.907042 GAGAAGAACAGGGGGAGAAGAA 59.093 50.000 0.00 0.00 0.00 2.52
857 859 2.112691 AGAGAAGAACAGGGGGAGAAGA 59.887 50.000 0.00 0.00 0.00 2.87
858 860 2.235898 CAGAGAAGAACAGGGGGAGAAG 59.764 54.545 0.00 0.00 0.00 2.85
859 861 2.158158 TCAGAGAAGAACAGGGGGAGAA 60.158 50.000 0.00 0.00 0.00 2.87
860 862 1.433199 TCAGAGAAGAACAGGGGGAGA 59.567 52.381 0.00 0.00 0.00 3.71
861 863 1.944177 TCAGAGAAGAACAGGGGGAG 58.056 55.000 0.00 0.00 0.00 4.30
862 864 2.472029 GATCAGAGAAGAACAGGGGGA 58.528 52.381 0.00 0.00 0.00 4.81
863 865 1.488393 GGATCAGAGAAGAACAGGGGG 59.512 57.143 0.00 0.00 0.00 5.40
864 866 1.488393 GGGATCAGAGAAGAACAGGGG 59.512 57.143 0.00 0.00 0.00 4.79
865 867 1.488393 GGGGATCAGAGAAGAACAGGG 59.512 57.143 0.00 0.00 0.00 4.45
866 868 2.433970 GAGGGGATCAGAGAAGAACAGG 59.566 54.545 0.00 0.00 0.00 4.00
867 869 3.373830 AGAGGGGATCAGAGAAGAACAG 58.626 50.000 0.00 0.00 0.00 3.16
868 870 3.245766 TGAGAGGGGATCAGAGAAGAACA 60.246 47.826 0.00 0.00 0.00 3.18
869 871 3.370104 TGAGAGGGGATCAGAGAAGAAC 58.630 50.000 0.00 0.00 0.00 3.01
870 872 3.765432 TGAGAGGGGATCAGAGAAGAA 57.235 47.619 0.00 0.00 0.00 2.52
871 873 3.765432 TTGAGAGGGGATCAGAGAAGA 57.235 47.619 0.00 0.00 0.00 2.87
872 874 3.118445 GGTTTGAGAGGGGATCAGAGAAG 60.118 52.174 0.00 0.00 0.00 2.85
873 875 2.840651 GGTTTGAGAGGGGATCAGAGAA 59.159 50.000 0.00 0.00 0.00 2.87
874 876 2.472029 GGTTTGAGAGGGGATCAGAGA 58.528 52.381 0.00 0.00 0.00 3.10
875 877 1.488393 GGGTTTGAGAGGGGATCAGAG 59.512 57.143 0.00 0.00 0.00 3.35
876 878 1.081174 AGGGTTTGAGAGGGGATCAGA 59.919 52.381 0.00 0.00 0.00 3.27
877 879 1.589414 AGGGTTTGAGAGGGGATCAG 58.411 55.000 0.00 0.00 0.00 2.90
878 880 2.844348 GTTAGGGTTTGAGAGGGGATCA 59.156 50.000 0.00 0.00 0.00 2.92
879 881 3.116174 AGTTAGGGTTTGAGAGGGGATC 58.884 50.000 0.00 0.00 0.00 3.36
880 882 3.222394 AGTTAGGGTTTGAGAGGGGAT 57.778 47.619 0.00 0.00 0.00 3.85
881 883 2.735259 AGTTAGGGTTTGAGAGGGGA 57.265 50.000 0.00 0.00 0.00 4.81
882 884 4.473559 TCAATAGTTAGGGTTTGAGAGGGG 59.526 45.833 0.00 0.00 0.00 4.79
883 885 5.693769 TCAATAGTTAGGGTTTGAGAGGG 57.306 43.478 0.00 0.00 0.00 4.30
884 886 7.611855 ACAAATCAATAGTTAGGGTTTGAGAGG 59.388 37.037 0.00 0.00 32.13 3.69
885 887 8.454106 CACAAATCAATAGTTAGGGTTTGAGAG 58.546 37.037 0.00 0.00 32.13 3.20
886 888 8.160765 TCACAAATCAATAGTTAGGGTTTGAGA 58.839 33.333 0.00 0.00 32.13 3.27
887 889 8.335532 TCACAAATCAATAGTTAGGGTTTGAG 57.664 34.615 0.00 0.00 32.13 3.02
888 890 8.160765 TCTCACAAATCAATAGTTAGGGTTTGA 58.839 33.333 0.00 0.00 33.06 2.69
889 891 8.237267 GTCTCACAAATCAATAGTTAGGGTTTG 58.763 37.037 0.00 0.00 0.00 2.93
890 892 8.164070 AGTCTCACAAATCAATAGTTAGGGTTT 58.836 33.333 0.00 0.00 0.00 3.27
891 893 7.690256 AGTCTCACAAATCAATAGTTAGGGTT 58.310 34.615 0.00 0.00 0.00 4.11
892 894 7.259088 AGTCTCACAAATCAATAGTTAGGGT 57.741 36.000 0.00 0.00 0.00 4.34
893 895 9.099454 GTTAGTCTCACAAATCAATAGTTAGGG 57.901 37.037 0.00 0.00 0.00 3.53
894 896 9.099454 GGTTAGTCTCACAAATCAATAGTTAGG 57.901 37.037 0.00 0.00 0.00 2.69
895 897 9.099454 GGGTTAGTCTCACAAATCAATAGTTAG 57.901 37.037 0.00 0.00 0.00 2.34
896 898 8.598916 TGGGTTAGTCTCACAAATCAATAGTTA 58.401 33.333 0.00 0.00 0.00 2.24
897 899 7.458397 TGGGTTAGTCTCACAAATCAATAGTT 58.542 34.615 0.00 0.00 0.00 2.24
898 900 7.016153 TGGGTTAGTCTCACAAATCAATAGT 57.984 36.000 0.00 0.00 0.00 2.12
899 901 6.540189 CCTGGGTTAGTCTCACAAATCAATAG 59.460 42.308 0.00 0.00 0.00 1.73
900 902 6.414732 CCTGGGTTAGTCTCACAAATCAATA 58.585 40.000 0.00 0.00 0.00 1.90
901 903 5.256474 CCTGGGTTAGTCTCACAAATCAAT 58.744 41.667 0.00 0.00 0.00 2.57
902 904 4.506625 CCCTGGGTTAGTCTCACAAATCAA 60.507 45.833 3.97 0.00 0.00 2.57
903 905 3.009033 CCCTGGGTTAGTCTCACAAATCA 59.991 47.826 3.97 0.00 0.00 2.57
904 906 3.610911 CCCTGGGTTAGTCTCACAAATC 58.389 50.000 3.97 0.00 0.00 2.17
905 907 2.290960 GCCCTGGGTTAGTCTCACAAAT 60.291 50.000 15.56 0.00 0.00 2.32
906 908 1.073284 GCCCTGGGTTAGTCTCACAAA 59.927 52.381 15.56 0.00 0.00 2.83
907 909 0.690762 GCCCTGGGTTAGTCTCACAA 59.309 55.000 15.56 0.00 0.00 3.33
908 910 1.198759 GGCCCTGGGTTAGTCTCACA 61.199 60.000 15.56 0.00 0.00 3.58
909 911 0.910088 AGGCCCTGGGTTAGTCTCAC 60.910 60.000 15.56 0.00 0.00 3.51
910 912 0.617820 GAGGCCCTGGGTTAGTCTCA 60.618 60.000 15.56 0.00 0.00 3.27
911 913 0.617820 TGAGGCCCTGGGTTAGTCTC 60.618 60.000 15.56 13.31 0.00 3.36
912 914 0.910088 GTGAGGCCCTGGGTTAGTCT 60.910 60.000 15.56 4.62 0.00 3.24
913 915 1.198759 TGTGAGGCCCTGGGTTAGTC 61.199 60.000 15.56 6.70 0.00 2.59
914 916 1.151899 TGTGAGGCCCTGGGTTAGT 60.152 57.895 15.56 0.00 0.00 2.24
915 917 1.201429 ACTGTGAGGCCCTGGGTTAG 61.201 60.000 15.56 6.55 0.00 2.34
916 918 0.770557 AACTGTGAGGCCCTGGGTTA 60.771 55.000 15.56 0.00 0.00 2.85
917 919 1.655114 AAACTGTGAGGCCCTGGGTT 61.655 55.000 15.56 2.75 0.00 4.11
918 920 1.655114 AAAACTGTGAGGCCCTGGGT 61.655 55.000 15.56 0.00 0.00 4.51
919 921 0.469892 AAAAACTGTGAGGCCCTGGG 60.470 55.000 8.86 8.86 0.00 4.45
920 922 0.961753 GAAAAACTGTGAGGCCCTGG 59.038 55.000 0.00 0.00 0.00 4.45
921 923 0.961753 GGAAAAACTGTGAGGCCCTG 59.038 55.000 0.00 0.00 0.00 4.45
922 924 0.178961 GGGAAAAACTGTGAGGCCCT 60.179 55.000 0.00 0.00 0.00 5.19
923 925 0.178961 AGGGAAAAACTGTGAGGCCC 60.179 55.000 0.00 0.00 0.00 5.80
924 926 0.961753 CAGGGAAAAACTGTGAGGCC 59.038 55.000 0.00 0.00 0.00 5.19
925 927 1.692411 ACAGGGAAAAACTGTGAGGC 58.308 50.000 0.00 0.00 46.67 4.70
931 933 3.287222 TCAGACCAACAGGGAAAAACTG 58.713 45.455 0.00 0.00 41.15 3.16
932 934 3.662759 TCAGACCAACAGGGAAAAACT 57.337 42.857 0.00 0.00 41.15 2.66
933 935 4.937201 ATTCAGACCAACAGGGAAAAAC 57.063 40.909 0.00 0.00 41.15 2.43
934 936 5.451242 CGAAATTCAGACCAACAGGGAAAAA 60.451 40.000 0.00 0.00 41.15 1.94
935 937 4.037446 CGAAATTCAGACCAACAGGGAAAA 59.963 41.667 0.00 0.00 41.15 2.29
936 938 3.568007 CGAAATTCAGACCAACAGGGAAA 59.432 43.478 0.00 0.00 41.15 3.13
937 939 3.146066 CGAAATTCAGACCAACAGGGAA 58.854 45.455 0.00 0.00 41.15 3.97
938 940 2.552155 CCGAAATTCAGACCAACAGGGA 60.552 50.000 0.00 0.00 41.15 4.20
939 941 1.812571 CCGAAATTCAGACCAACAGGG 59.187 52.381 0.00 0.00 44.81 4.45
940 942 2.226437 CACCGAAATTCAGACCAACAGG 59.774 50.000 0.00 0.00 0.00 4.00
941 943 3.058914 GTCACCGAAATTCAGACCAACAG 60.059 47.826 0.00 0.00 0.00 3.16
942 944 2.875933 GTCACCGAAATTCAGACCAACA 59.124 45.455 0.00 0.00 0.00 3.33
943 945 2.875933 TGTCACCGAAATTCAGACCAAC 59.124 45.455 7.44 0.00 0.00 3.77
944 946 3.138304 CTGTCACCGAAATTCAGACCAA 58.862 45.455 7.44 0.00 0.00 3.67
945 947 2.104111 ACTGTCACCGAAATTCAGACCA 59.896 45.455 7.44 0.00 0.00 4.02
946 948 2.737252 GACTGTCACCGAAATTCAGACC 59.263 50.000 2.24 0.00 0.00 3.85
947 949 2.737252 GGACTGTCACCGAAATTCAGAC 59.263 50.000 10.38 0.00 0.00 3.51
948 950 2.632996 AGGACTGTCACCGAAATTCAGA 59.367 45.455 10.38 0.00 0.00 3.27
949 951 3.045601 AGGACTGTCACCGAAATTCAG 57.954 47.619 10.38 0.00 0.00 3.02
950 952 3.576982 ACTAGGACTGTCACCGAAATTCA 59.423 43.478 10.38 0.00 0.00 2.57
951 953 4.082136 AGACTAGGACTGTCACCGAAATTC 60.082 45.833 10.38 0.00 36.94 2.17
952 954 3.833070 AGACTAGGACTGTCACCGAAATT 59.167 43.478 10.38 0.00 36.94 1.82
953 955 3.193691 CAGACTAGGACTGTCACCGAAAT 59.806 47.826 10.38 0.00 36.94 2.17
954 956 2.557056 CAGACTAGGACTGTCACCGAAA 59.443 50.000 10.38 0.00 36.94 3.46
955 957 2.160205 CAGACTAGGACTGTCACCGAA 58.840 52.381 10.38 0.00 36.94 4.30
956 958 1.613520 CCAGACTAGGACTGTCACCGA 60.614 57.143 10.38 0.00 36.94 4.69
957 959 0.811915 CCAGACTAGGACTGTCACCG 59.188 60.000 10.38 0.00 36.94 4.94
958 960 1.819903 GACCAGACTAGGACTGTCACC 59.180 57.143 10.38 0.00 36.94 4.02
959 961 1.819903 GGACCAGACTAGGACTGTCAC 59.180 57.143 10.38 0.00 36.94 3.67
960 962 1.711375 AGGACCAGACTAGGACTGTCA 59.289 52.381 10.38 0.00 36.94 3.58
961 963 2.096248 CAGGACCAGACTAGGACTGTC 58.904 57.143 14.82 0.00 34.69 3.51
962 964 1.429687 ACAGGACCAGACTAGGACTGT 59.570 52.381 14.82 14.03 41.74 3.55
963 965 2.096248 GACAGGACCAGACTAGGACTG 58.904 57.143 10.83 10.83 40.46 3.51
964 966 1.711375 TGACAGGACCAGACTAGGACT 59.289 52.381 0.00 0.00 0.00 3.85
965 967 2.096248 CTGACAGGACCAGACTAGGAC 58.904 57.143 0.00 0.00 33.65 3.85
966 968 1.993301 TCTGACAGGACCAGACTAGGA 59.007 52.381 1.81 0.00 35.89 2.94
967 969 2.516227 TCTGACAGGACCAGACTAGG 57.484 55.000 1.81 0.00 35.89 3.02
989 991 3.760693 ACAGCCATATGTGACGACC 57.239 52.632 1.24 0.00 30.46 4.79
996 998 4.019860 GGATGAGATACCACAGCCATATGT 60.020 45.833 1.24 0.00 41.47 2.29
1010 1012 2.284754 AGAGAGCAGCGGATGAGATA 57.715 50.000 0.00 0.00 0.00 1.98
1165 1167 1.079127 CTTCCCCGTCATGCTCGTT 60.079 57.895 8.72 0.00 0.00 3.85
1201 1203 1.764054 CTCTCAGGGGGCTGGTAGG 60.764 68.421 0.00 0.00 0.00 3.18
1230 1232 2.178912 TTTCGTCATCCAAGGTGTCC 57.821 50.000 0.00 0.00 0.00 4.02
1275 1277 1.153647 CTCTGCACCGTCGCCATTA 60.154 57.895 0.00 0.00 0.00 1.90
1287 1289 1.685077 CTGCTCTCCCTCCTCTGCA 60.685 63.158 0.00 0.00 0.00 4.41
1312 1314 1.405526 CCACTCACCCACCTCGTATTG 60.406 57.143 0.00 0.00 0.00 1.90
1549 1551 1.600636 CAGCCAAGAACCCAGCGAA 60.601 57.895 0.00 0.00 0.00 4.70
1608 1610 2.709934 CTCACCCATCCTCCTCATCAAT 59.290 50.000 0.00 0.00 0.00 2.57
1691 1693 1.298157 CTGCGGCGACAAGGAAATCA 61.298 55.000 12.98 0.00 0.00 2.57
1749 1751 2.954318 CTCCAAGATTTCATCGGCCATT 59.046 45.455 2.24 0.00 0.00 3.16
1888 1890 8.611757 CACGAATGAAATTAATATGGTCACTCA 58.388 33.333 0.00 0.00 36.07 3.41
1889 1891 7.587757 GCACGAATGAAATTAATATGGTCACTC 59.412 37.037 0.00 0.00 36.07 3.51
1890 1892 7.283127 AGCACGAATGAAATTAATATGGTCACT 59.717 33.333 0.00 0.00 36.07 3.41
1891 1893 7.417612 AGCACGAATGAAATTAATATGGTCAC 58.582 34.615 0.00 0.00 36.07 3.67
1895 1897 9.546909 GTGATAGCACGAATGAAATTAATATGG 57.453 33.333 0.00 0.00 33.55 2.74
1912 1918 9.443283 CTATTAATCTTGCAAAAGTGATAGCAC 57.557 33.333 2.01 2.01 45.49 4.40
1937 1943 6.818644 TCGGTCAATAAGTACGAGTAACTACT 59.181 38.462 0.00 0.00 39.71 2.57
1938 1944 6.902417 GTCGGTCAATAAGTACGAGTAACTAC 59.098 42.308 0.00 0.00 33.92 2.73
1939 1945 6.818644 AGTCGGTCAATAAGTACGAGTAACTA 59.181 38.462 0.00 0.00 35.69 2.24
1940 1946 5.645497 AGTCGGTCAATAAGTACGAGTAACT 59.355 40.000 0.00 0.00 35.69 2.24
1941 1947 5.873732 AGTCGGTCAATAAGTACGAGTAAC 58.126 41.667 0.00 0.00 35.69 2.50
1942 1948 6.500684 AAGTCGGTCAATAAGTACGAGTAA 57.499 37.500 0.00 0.00 36.34 2.24
1944 1950 5.877012 TCTAAGTCGGTCAATAAGTACGAGT 59.123 40.000 0.00 0.00 38.70 4.18
1945 1951 6.355397 TCTAAGTCGGTCAATAAGTACGAG 57.645 41.667 0.00 0.00 33.92 4.18
1946 1952 6.292542 CGATCTAAGTCGGTCAATAAGTACGA 60.293 42.308 0.00 0.00 37.94 3.43
1947 1953 5.844914 CGATCTAAGTCGGTCAATAAGTACG 59.155 44.000 0.00 0.00 37.94 3.67
1948 1954 6.952743 TCGATCTAAGTCGGTCAATAAGTAC 58.047 40.000 0.00 0.00 41.74 2.73
1992 2000 9.653516 TTAATGGGAATGCCATTTAGAAATAGA 57.346 29.630 23.62 0.05 38.59 1.98
2011 2019 7.948034 TGTATTGTAGGAAAAGGTTAATGGG 57.052 36.000 0.00 0.00 0.00 4.00
2086 2095 1.200948 GTGGAGCAAATCAAGCTGACC 59.799 52.381 0.00 0.00 43.58 4.02
2092 2101 3.629398 GTGGGATAGTGGAGCAAATCAAG 59.371 47.826 0.00 0.00 0.00 3.02
2112 2121 9.599866 TTCATACCACAGAATTTATAGACAGTG 57.400 33.333 0.00 0.00 0.00 3.66
2113 2122 9.601217 GTTCATACCACAGAATTTATAGACAGT 57.399 33.333 0.00 0.00 0.00 3.55
2114 2123 9.823647 AGTTCATACCACAGAATTTATAGACAG 57.176 33.333 0.00 0.00 0.00 3.51
2120 2129 8.830580 CGATGAAGTTCATACCACAGAATTTAT 58.169 33.333 18.28 0.00 37.20 1.40
2129 2138 6.142480 CGAGATAACGATGAAGTTCATACCAC 59.858 42.308 18.28 5.38 37.20 4.16
2153 2162 6.697019 CCATAGTTTTCTTTATTTGCATCCCG 59.303 38.462 0.00 0.00 0.00 5.14
2265 2275 4.832248 TGGTGTTCATGCTTAGTTAGGAG 58.168 43.478 0.00 0.00 0.00 3.69
2312 2322 4.939052 ATACATAGCTTACCGCAGAAGT 57.061 40.909 0.00 0.00 42.61 3.01
2319 2329 8.822855 TCACAACAAATAATACATAGCTTACCG 58.177 33.333 0.00 0.00 0.00 4.02
2340 2350 6.183360 GGCGAGTAGAAAAATGATCATCACAA 60.183 38.462 9.06 0.00 0.00 3.33
2349 2359 3.973206 TCTGGGCGAGTAGAAAAATGA 57.027 42.857 0.00 0.00 0.00 2.57
2425 2436 4.581824 ACATGATTGAGGATGTTATGTGGC 59.418 41.667 0.00 0.00 27.94 5.01
2570 2581 0.737715 CTTTCTTCAGCCCCTCGTCG 60.738 60.000 0.00 0.00 0.00 5.12
2573 2584 1.731720 CTTCTTTCTTCAGCCCCTCG 58.268 55.000 0.00 0.00 0.00 4.63
2633 2644 5.163804 TGCGTTATAAATGCTCGTGTTTGAT 60.164 36.000 11.09 0.00 43.78 2.57
2828 2839 1.930251 TTGGCCGAAATCCCAAATCA 58.070 45.000 0.00 0.00 38.12 2.57
2842 2853 2.230660 GGTATGACCTAGCATTTGGCC 58.769 52.381 0.00 0.00 38.20 5.36
2862 2873 2.988010 TAGGCACTTATGAGGCAGTG 57.012 50.000 2.85 0.00 42.94 3.66
2906 2917 2.422832 CAGGAAAGCATCTTCAGCCTTC 59.577 50.000 0.00 0.00 32.92 3.46
2948 2959 4.927425 GTGTACGAAGAAGATGTTGCCTTA 59.073 41.667 0.00 0.00 0.00 2.69
3107 3118 5.991606 TGTCTCCATTAACTTCTCTGTGTTG 59.008 40.000 0.00 0.00 0.00 3.33
3112 3123 5.982356 TCCATGTCTCCATTAACTTCTCTG 58.018 41.667 0.00 0.00 0.00 3.35
3197 3208 0.387565 ACAACCCATGTTTCGCCAAC 59.612 50.000 0.00 0.00 40.06 3.77
3272 3283 7.112122 TCATCAAAATGTTGTAGGTCATAGCT 58.888 34.615 0.00 0.00 36.07 3.32
3275 3286 8.190122 GCATTCATCAAAATGTTGTAGGTCATA 58.810 33.333 0.00 0.00 38.60 2.15
3290 3301 4.141892 CCCTTGGCATAAGCATTCATCAAA 60.142 41.667 0.00 0.00 44.61 2.69
3308 3319 2.787473 TGTAATGCTGTCCTCCCTTG 57.213 50.000 0.00 0.00 0.00 3.61
3428 3439 6.662414 TTGTGGTAATAGAATGCTTTCGAG 57.338 37.500 6.68 0.00 36.93 4.04
3433 3444 5.500234 TCTGCTTGTGGTAATAGAATGCTT 58.500 37.500 0.00 0.00 0.00 3.91
3578 3589 9.396022 TCCTTCCTATGTTTTAAGCTAGATTTG 57.604 33.333 0.00 0.00 0.00 2.32
3713 3724 3.012518 CAAGGGATGAGTACTGCAAAGG 58.987 50.000 0.00 0.00 0.00 3.11
3718 3729 2.770164 ACACAAGGGATGAGTACTGC 57.230 50.000 0.00 0.00 30.51 4.40
3734 3745 3.067106 CGTGGAGCCCATGATATAACAC 58.933 50.000 7.47 0.00 42.73 3.32
3748 3759 5.163713 ATTCAAGAGAATTAAAGCGTGGAGC 60.164 40.000 0.00 0.00 41.64 4.70
3781 3792 4.200092 CCCCATAGCTTCTGACCTAAAAC 58.800 47.826 0.00 0.00 0.00 2.43
3795 3806 4.082949 GGAATTAATAACACGCCCCATAGC 60.083 45.833 0.00 0.00 0.00 2.97
3801 3812 5.009210 TGCTTATGGAATTAATAACACGCCC 59.991 40.000 0.00 0.00 0.00 6.13
3802 3813 6.067263 TGCTTATGGAATTAATAACACGCC 57.933 37.500 0.00 0.00 0.00 5.68
3823 3834 5.466728 TCAGTTAGACAGTCAAAGTGAATGC 59.533 40.000 2.66 0.04 45.35 3.56
3824 3835 7.601886 AGATCAGTTAGACAGTCAAAGTGAATG 59.398 37.037 2.66 4.28 46.68 2.67
3842 3853 6.155910 AGTGTATTCAGACCATGAGATCAGTT 59.844 38.462 0.00 0.00 39.68 3.16
3849 3860 9.778993 CAAAATTAAGTGTATTCAGACCATGAG 57.221 33.333 0.00 0.00 39.68 2.90
3869 3880 8.354426 AGCTCAAGCAATTTAAAATGCAAAATT 58.646 25.926 25.83 11.61 44.95 1.82
3996 4007 6.461110 AAGGGCATCTTTTCAATGTATCAG 57.539 37.500 0.00 0.00 29.99 2.90
4004 4015 4.419282 AGATCCAAAGGGCATCTTTTCAA 58.581 39.130 2.11 0.00 42.62 2.69
4017 4028 8.048534 ACACAATCTGTTCATAAGATCCAAAG 57.951 34.615 0.00 0.00 33.17 2.77
4039 4050 5.474825 TCCCTTGACTCAAAAACAAAACAC 58.525 37.500 0.00 0.00 0.00 3.32
4100 4112 8.080417 TCAAAATTATCTTCCTCTATACGACGG 58.920 37.037 0.00 0.00 0.00 4.79
4126 4138 7.553760 GGAAATAGGGAATGTGCAAATGAAAAT 59.446 33.333 0.00 0.00 0.00 1.82
4130 4142 5.271598 AGGAAATAGGGAATGTGCAAATGA 58.728 37.500 0.00 0.00 0.00 2.57
4131 4143 5.603170 AGGAAATAGGGAATGTGCAAATG 57.397 39.130 0.00 0.00 0.00 2.32
4134 4146 8.278639 TCTAATTAGGAAATAGGGAATGTGCAA 58.721 33.333 12.54 0.00 0.00 4.08
4270 4283 3.974401 CACGTCTTTGTTTGCAATAGTGG 59.026 43.478 0.00 0.00 34.18 4.00
4299 4312 3.320541 TGGTGTTTTTGTAGGAGCAATGG 59.679 43.478 0.00 0.00 0.00 3.16
4304 4317 4.820173 AGTAGTTGGTGTTTTTGTAGGAGC 59.180 41.667 0.00 0.00 0.00 4.70
4314 4327 5.358442 TGCAACAATACAGTAGTTGGTGTTT 59.642 36.000 16.03 0.24 43.25 2.83
4363 4376 2.158127 TGTGAAGGGGGTGGTAGTAGAA 60.158 50.000 0.00 0.00 0.00 2.10
4371 4384 5.124036 TCTTATATTTGTGAAGGGGGTGG 57.876 43.478 0.00 0.00 0.00 4.61
4372 4385 6.129179 ACATCTTATATTTGTGAAGGGGGTG 58.871 40.000 0.00 0.00 0.00 4.61
4373 4386 6.341408 ACATCTTATATTTGTGAAGGGGGT 57.659 37.500 0.00 0.00 0.00 4.95
4376 4389 7.067372 TGCAGAACATCTTATATTTGTGAAGGG 59.933 37.037 0.00 0.00 0.00 3.95
4400 4414 6.302549 CGTATATAGTCCGTATCGCAATATGC 59.697 42.308 0.00 0.00 40.69 3.14
4407 4421 3.868077 AGTCCGTATATAGTCCGTATCGC 59.132 47.826 0.00 0.00 0.00 4.58
4409 4423 9.713740 CATTTTAGTCCGTATATAGTCCGTATC 57.286 37.037 0.00 0.00 0.00 2.24
4413 4427 7.749570 CACTCATTTTAGTCCGTATATAGTCCG 59.250 40.741 0.00 0.00 0.00 4.79
4420 4434 8.928733 GTTTGTTCACTCATTTTAGTCCGTATA 58.071 33.333 0.00 0.00 0.00 1.47
4472 4486 6.907212 CCCTTCGTTCATATTTTTCTGAATCG 59.093 38.462 0.00 0.00 34.18 3.34
4501 4515 4.833380 AGGCCGATGTAGACTGTGTAATAT 59.167 41.667 0.00 0.00 0.00 1.28
4502 4516 4.212716 AGGCCGATGTAGACTGTGTAATA 58.787 43.478 0.00 0.00 0.00 0.98
4513 4527 3.499918 GGATTCAAATGAGGCCGATGTAG 59.500 47.826 0.00 0.00 0.00 2.74
4514 4528 3.118075 TGGATTCAAATGAGGCCGATGTA 60.118 43.478 0.00 0.00 0.00 2.29
4558 4572 8.191393 TGATTGCAAGAATCAATGGCAACAGA 62.191 38.462 4.94 0.00 45.91 3.41
4580 4595 1.355381 TGCTGGACTTTCCACCATGAT 59.645 47.619 0.00 0.00 42.67 2.45
4630 4645 6.995686 TGAGTAGCACAAAAAGAATACCTTGA 59.004 34.615 0.00 0.00 34.79 3.02
4631 4646 7.202016 TGAGTAGCACAAAAAGAATACCTTG 57.798 36.000 0.00 0.00 34.79 3.61
4632 4647 8.409358 AATGAGTAGCACAAAAAGAATACCTT 57.591 30.769 0.00 0.00 36.47 3.50
4633 4648 8.409358 AAATGAGTAGCACAAAAAGAATACCT 57.591 30.769 0.00 0.00 0.00 3.08
4634 4649 8.296713 TGAAATGAGTAGCACAAAAAGAATACC 58.703 33.333 0.00 0.00 0.00 2.73
4635 4650 9.118236 GTGAAATGAGTAGCACAAAAAGAATAC 57.882 33.333 0.00 0.00 0.00 1.89
4636 4651 8.296713 GGTGAAATGAGTAGCACAAAAAGAATA 58.703 33.333 0.00 0.00 33.09 1.75
4637 4652 7.147976 GGTGAAATGAGTAGCACAAAAAGAAT 58.852 34.615 0.00 0.00 33.09 2.40
4638 4653 6.096141 TGGTGAAATGAGTAGCACAAAAAGAA 59.904 34.615 0.00 0.00 33.09 2.52
4639 4654 5.592282 TGGTGAAATGAGTAGCACAAAAAGA 59.408 36.000 0.00 0.00 33.09 2.52
4640 4655 5.830912 TGGTGAAATGAGTAGCACAAAAAG 58.169 37.500 0.00 0.00 33.09 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.