Multiple sequence alignment - TraesCS2B01G293300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G293300 chr2B 100.000 4600 0 0 1 4600 408723051 408727650 0.000000e+00 8495.0
1 TraesCS2B01G293300 chr2B 96.273 161 5 1 4441 4600 793972840 793973000 3.530000e-66 263.0
2 TraesCS2B01G293300 chr2B 90.291 103 8 2 3845 3946 796789057 796788956 2.890000e-27 134.0
3 TraesCS2B01G293300 chr2A 92.798 2055 89 24 1 2037 454689324 454691337 0.000000e+00 2920.0
4 TraesCS2B01G293300 chr2A 91.232 1631 73 28 2275 3857 454691656 454693264 0.000000e+00 2156.0
5 TraesCS2B01G293300 chr2A 87.742 465 18 11 3986 4449 454693281 454693707 1.480000e-139 507.0
6 TraesCS2B01G293300 chr2A 82.547 424 62 10 281 699 736742736 736743152 3.380000e-96 363.0
7 TraesCS2B01G293300 chr2A 94.675 169 8 1 4432 4600 165237453 165237620 1.270000e-65 261.0
8 TraesCS2B01G293300 chr2A 92.262 168 5 3 2118 2279 454691335 454691500 9.950000e-57 231.0
9 TraesCS2B01G293300 chr2A 90.244 82 8 0 2040 2121 660287364 660287445 1.750000e-19 108.0
10 TraesCS2B01G293300 chr2D 95.930 1204 27 6 857 2038 343555133 343556336 0.000000e+00 1932.0
11 TraesCS2B01G293300 chr2D 91.660 1295 56 23 2535 3788 343557044 343558327 0.000000e+00 1746.0
12 TraesCS2B01G293300 chr2D 93.824 421 13 6 2121 2540 343556332 343556740 5.050000e-174 621.0
13 TraesCS2B01G293300 chr2D 96.000 250 9 1 3937 4186 343558355 343558603 5.540000e-109 405.0
14 TraesCS2B01G293300 chr2D 82.651 415 62 9 281 692 467889011 467889418 4.380000e-95 359.0
15 TraesCS2B01G293300 chr2D 81.884 414 65 9 281 689 6081449 6081041 1.590000e-89 340.0
16 TraesCS2B01G293300 chr2D 91.473 258 7 4 4192 4449 343559044 343559286 1.590000e-89 340.0
17 TraesCS2B01G293300 chr2D 87.413 286 26 7 1 279 343540121 343540403 2.060000e-83 320.0
18 TraesCS2B01G293300 chr2D 90.798 163 6 4 703 860 343540398 343540556 4.660000e-50 209.0
19 TraesCS2B01G293300 chr2D 88.889 90 9 1 2031 2119 102881951 102881862 4.870000e-20 110.0
20 TraesCS2B01G293300 chr2D 87.059 85 11 0 2035 2119 612945420 612945336 3.790000e-16 97.1
21 TraesCS2B01G293300 chr4D 84.578 415 54 6 281 692 441081529 441081122 1.990000e-108 403.0
22 TraesCS2B01G293300 chr5D 83.095 420 60 10 281 695 541528056 541527643 5.620000e-99 372.0
23 TraesCS2B01G293300 chr5D 81.948 421 61 13 280 692 59940716 59940303 4.410000e-90 342.0
24 TraesCS2B01G293300 chr3D 81.579 418 64 12 281 694 399677886 399678294 2.650000e-87 333.0
25 TraesCS2B01G293300 chr7D 81.221 426 67 11 281 699 11017927 11018346 9.540000e-87 331.0
26 TraesCS2B01G293300 chr7D 86.170 94 13 0 2035 2128 156686585 156686492 8.140000e-18 102.0
27 TraesCS2B01G293300 chr7B 99.324 148 1 0 4453 4600 194118732 194118585 7.590000e-68 268.0
28 TraesCS2B01G293300 chr7B 94.624 93 5 0 3848 3940 616099855 616099763 1.330000e-30 145.0
29 TraesCS2B01G293300 chr6A 98.052 154 3 0 4447 4600 93276595 93276442 7.590000e-68 268.0
30 TraesCS2B01G293300 chr6A 94.624 93 4 1 3849 3940 595071516 595071424 4.800000e-30 143.0
31 TraesCS2B01G293300 chr6A 87.179 78 9 1 2901 2977 499406954 499406877 2.280000e-13 87.9
32 TraesCS2B01G293300 chr4B 99.324 148 1 0 4453 4600 77649361 77649214 7.590000e-68 268.0
33 TraesCS2B01G293300 chr4B 95.758 165 6 1 4437 4600 128540864 128541028 9.810000e-67 265.0
34 TraesCS2B01G293300 chr4B 85.714 91 11 2 2034 2123 496467475 496467564 1.360000e-15 95.3
35 TraesCS2B01G293300 chr4A 97.419 155 4 0 4446 4600 40236046 40235892 9.810000e-67 265.0
36 TraesCS2B01G293300 chr4A 96.273 161 4 2 4440 4600 690223172 690223330 3.530000e-66 263.0
37 TraesCS2B01G293300 chr4A 93.678 174 8 3 4428 4600 587326054 587326225 1.640000e-64 257.0
38 TraesCS2B01G293300 chr4A 96.552 87 3 0 3855 3941 728941528 728941614 1.330000e-30 145.0
39 TraesCS2B01G293300 chr3A 94.565 92 5 0 3849 3940 199136739 199136830 4.800000e-30 143.0
40 TraesCS2B01G293300 chr3A 91.346 104 7 2 3856 3958 388801204 388801102 1.730000e-29 141.0
41 TraesCS2B01G293300 chr3A 84.783 92 10 4 2030 2119 742239567 742239478 6.340000e-14 89.8
42 TraesCS2B01G293300 chr3A 83.505 97 12 3 2035 2128 550510695 550510600 2.280000e-13 87.9
43 TraesCS2B01G293300 chrUn 92.784 97 7 0 3848 3944 15908535 15908439 1.730000e-29 141.0
44 TraesCS2B01G293300 chr3B 94.505 91 5 0 3852 3942 816817208 816817118 1.730000e-29 141.0
45 TraesCS2B01G293300 chr5A 92.784 97 6 1 3844 3940 547393318 547393413 6.210000e-29 139.0
46 TraesCS2B01G293300 chr1B 88.889 90 9 1 2035 2123 186799421 186799332 4.870000e-20 110.0
47 TraesCS2B01G293300 chr6B 85.227 88 13 0 2035 2122 527526941 527526854 1.760000e-14 91.6
48 TraesCS2B01G293300 chr6D 87.179 78 9 1 2901 2977 357012990 357012913 2.280000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G293300 chr2B 408723051 408727650 4599 False 8495.0 8495 100.0000 1 4600 1 chr2B.!!$F1 4599
1 TraesCS2B01G293300 chr2A 454689324 454693707 4383 False 1453.5 2920 91.0085 1 4449 4 chr2A.!!$F4 4448
2 TraesCS2B01G293300 chr2D 343555133 343559286 4153 False 1008.8 1932 93.7774 857 4449 5 chr2D.!!$F3 3592

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
847 850 0.439985 GCGCGGATGTATAGCATGTG 59.560 55.0 8.83 0.0 38.06 3.21 F
2054 2077 0.035056 ACTCCCTCCGCCTCAAAATG 60.035 55.0 0.00 0.0 0.00 2.32 F
2058 2081 0.171903 CCTCCGCCTCAAAATGCAAG 59.828 55.0 0.00 0.0 0.00 4.01 F
2062 2085 0.238289 CGCCTCAAAATGCAAGACGT 59.762 50.0 0.00 0.0 0.00 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2606 3118 0.030773 TTCACCATAGCTAGCTCGCG 59.969 55.0 23.26 11.78 34.40 5.87 R
3199 3748 0.246635 TGGTCTAGCAGAAGTTCCGC 59.753 55.0 2.68 2.68 0.00 5.54 R
3351 3919 0.250901 GGTCTTGCTCCCAGCTGAAA 60.251 55.0 17.39 1.00 42.97 2.69 R
3928 4508 0.902531 CCACAACATACTCCCTCCGT 59.097 55.0 0.00 0.00 0.00 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.816354 AAGCAAAGTAGATGTTGTTTAATTTGT 57.184 25.926 5.82 0.00 35.78 2.83
100 101 5.866335 TCATTGGAAATTTTGCATGAAGC 57.134 34.783 4.07 0.00 45.96 3.86
153 154 7.867305 TCATGTAAAAGACACTTGTACCAAA 57.133 32.000 8.69 0.00 42.17 3.28
197 198 2.513738 AGGTTCAAATAGGCAGGGCATA 59.486 45.455 0.00 0.00 0.00 3.14
211 212 3.066704 AGGGCATAGGAATCCTCCATTT 58.933 45.455 4.42 0.00 45.24 2.32
303 304 8.555361 CCAAAAATACAAAGGTGTAAATGGTTG 58.445 33.333 0.00 0.00 43.41 3.77
304 305 8.555361 CAAAAATACAAAGGTGTAAATGGTTGG 58.445 33.333 0.00 0.00 43.41 3.77
328 329 2.339418 CGCACCCACGTGAATAGTAAA 58.661 47.619 19.30 0.00 43.14 2.01
332 333 4.393680 GCACCCACGTGAATAGTAAATTCA 59.606 41.667 19.30 0.00 43.14 2.57
403 404 1.204704 TGGTCAGCCATTCTACTCACG 59.795 52.381 0.00 0.00 40.46 4.35
451 452 6.823689 ACACCCATGATATTCTTAGTGAACAC 59.176 38.462 0.00 0.00 37.52 3.32
452 453 6.823182 CACCCATGATATTCTTAGTGAACACA 59.177 38.462 7.68 0.00 37.52 3.72
473 474 7.639378 ACACAATACAATTGGGACCTTACTAT 58.361 34.615 10.83 0.00 0.00 2.12
476 477 8.557450 ACAATACAATTGGGACCTTACTATTCT 58.443 33.333 10.83 0.00 0.00 2.40
516 517 9.906660 TTTTTAATATTGCTTCGACTTTGTCAT 57.093 25.926 0.00 0.00 32.09 3.06
539 540 2.051334 TGCCCCGAATAACAAGGATG 57.949 50.000 0.00 0.00 0.00 3.51
546 547 6.406512 GCCCCGAATAACAAGGATGTAAATTT 60.407 38.462 0.00 0.00 39.40 1.82
575 576 2.590821 ACTTCATACGCGGGTATACCT 58.409 47.619 22.92 4.26 37.24 3.08
576 577 3.754965 ACTTCATACGCGGGTATACCTA 58.245 45.455 22.92 6.47 37.24 3.08
669 671 1.132262 CATAAAAGGTGCGCGTGGAAT 59.868 47.619 8.43 0.00 0.00 3.01
686 688 4.402155 GTGGAATCATGCTTACCAAATCCA 59.598 41.667 0.00 0.00 32.32 3.41
696 698 4.142093 GCTTACCAAATCCACGTCCTAGTA 60.142 45.833 0.00 0.00 0.00 1.82
697 699 5.625197 GCTTACCAAATCCACGTCCTAGTAA 60.625 44.000 0.00 0.00 0.00 2.24
701 703 6.243148 ACCAAATCCACGTCCTAGTAAATTT 58.757 36.000 0.00 0.00 0.00 1.82
734 736 5.471797 TCGTGTGAATTAAATCAAAGAGCCA 59.528 36.000 0.00 0.00 0.00 4.75
738 740 7.487189 GTGTGAATTAAATCAAAGAGCCATGAG 59.513 37.037 0.00 0.00 0.00 2.90
739 741 6.474751 GTGAATTAAATCAAAGAGCCATGAGC 59.525 38.462 0.00 0.00 44.25 4.26
752 754 4.234530 GCCATGAGCATTATGTTTCCTC 57.765 45.455 0.00 0.00 42.97 3.71
815 818 5.540337 AGAACATAGAGAACAGAGTGACCAA 59.460 40.000 0.00 0.00 0.00 3.67
816 819 5.140747 ACATAGAGAACAGAGTGACCAAC 57.859 43.478 0.00 0.00 0.00 3.77
826 829 2.894126 AGAGTGACCAACGATCAGAAGT 59.106 45.455 0.00 0.00 0.00 3.01
827 830 2.989840 GAGTGACCAACGATCAGAAGTG 59.010 50.000 0.00 0.00 0.00 3.16
829 832 1.079503 GACCAACGATCAGAAGTGGC 58.920 55.000 0.00 0.00 0.00 5.01
830 833 0.670546 ACCAACGATCAGAAGTGGCG 60.671 55.000 0.00 0.00 0.00 5.69
831 834 1.421485 CAACGATCAGAAGTGGCGC 59.579 57.895 0.00 0.00 0.00 6.53
833 836 3.257561 CGATCAGAAGTGGCGCGG 61.258 66.667 8.83 0.00 0.00 6.46
835 838 1.227380 GATCAGAAGTGGCGCGGAT 60.227 57.895 8.83 0.00 0.00 4.18
837 840 2.244117 ATCAGAAGTGGCGCGGATGT 62.244 55.000 8.83 0.00 0.00 3.06
838 841 1.153647 CAGAAGTGGCGCGGATGTA 60.154 57.895 8.83 0.00 0.00 2.29
839 842 0.530650 CAGAAGTGGCGCGGATGTAT 60.531 55.000 8.83 0.00 0.00 2.29
840 843 1.037493 AGAAGTGGCGCGGATGTATA 58.963 50.000 8.83 0.00 0.00 1.47
841 844 1.000163 AGAAGTGGCGCGGATGTATAG 60.000 52.381 8.83 0.00 0.00 1.31
842 845 0.600255 AAGTGGCGCGGATGTATAGC 60.600 55.000 8.83 0.00 0.00 2.97
843 846 1.300620 GTGGCGCGGATGTATAGCA 60.301 57.895 8.83 0.00 0.00 3.49
844 847 0.670546 GTGGCGCGGATGTATAGCAT 60.671 55.000 8.83 0.00 41.24 3.79
845 848 0.670239 TGGCGCGGATGTATAGCATG 60.670 55.000 8.83 0.00 38.06 4.06
846 849 0.670546 GGCGCGGATGTATAGCATGT 60.671 55.000 8.83 0.00 38.06 3.21
847 850 0.439985 GCGCGGATGTATAGCATGTG 59.560 55.000 8.83 0.00 38.06 3.21
848 851 0.439985 CGCGGATGTATAGCATGTGC 59.560 55.000 0.00 0.00 38.06 4.57
849 852 0.798776 GCGGATGTATAGCATGTGCC 59.201 55.000 0.57 0.00 43.38 5.01
850 853 1.609061 GCGGATGTATAGCATGTGCCT 60.609 52.381 0.57 0.00 43.38 4.75
851 854 2.353704 GCGGATGTATAGCATGTGCCTA 60.354 50.000 0.57 0.00 43.38 3.93
852 855 3.254060 CGGATGTATAGCATGTGCCTAC 58.746 50.000 0.57 5.10 43.38 3.18
853 856 3.056536 CGGATGTATAGCATGTGCCTACT 60.057 47.826 0.57 0.00 43.38 2.57
854 857 4.157840 CGGATGTATAGCATGTGCCTACTA 59.842 45.833 0.57 0.00 43.38 1.82
855 858 5.336451 CGGATGTATAGCATGTGCCTACTAA 60.336 44.000 0.57 0.00 43.38 2.24
904 907 1.070105 TCACTTCCCACCCGTTTCG 59.930 57.895 0.00 0.00 0.00 3.46
971 987 1.452226 TTCTCCCCTCCTCTCACCCA 61.452 60.000 0.00 0.00 0.00 4.51
1071 1087 3.508840 CCGTTCCTTGGCGCATCC 61.509 66.667 10.83 0.00 0.00 3.51
1101 1117 2.027625 GCCGTGTTCAGGGTTCGAG 61.028 63.158 12.15 0.00 0.00 4.04
1672 1691 1.669115 CCCAGTTGCTCCGTCAGTG 60.669 63.158 0.00 0.00 0.00 3.66
1851 1870 1.370051 GGCAGCAACGACGAAAACC 60.370 57.895 0.00 0.00 0.00 3.27
1853 1872 2.018544 CAGCAACGACGAAAACCCA 58.981 52.632 0.00 0.00 0.00 4.51
1856 1875 1.281656 CAACGACGAAAACCCAGGC 59.718 57.895 0.00 0.00 0.00 4.85
2037 2060 6.370593 CAAATGCACGTCACTGTAATTTACT 58.629 36.000 7.99 0.00 0.00 2.24
2038 2061 5.779806 ATGCACGTCACTGTAATTTACTC 57.220 39.130 7.99 0.00 0.00 2.59
2039 2062 3.991773 TGCACGTCACTGTAATTTACTCC 59.008 43.478 7.99 0.00 0.00 3.85
2040 2063 3.370061 GCACGTCACTGTAATTTACTCCC 59.630 47.826 7.99 0.00 0.00 4.30
2041 2064 4.817517 CACGTCACTGTAATTTACTCCCT 58.182 43.478 7.99 0.00 0.00 4.20
2042 2065 4.863131 CACGTCACTGTAATTTACTCCCTC 59.137 45.833 7.99 0.00 0.00 4.30
2043 2066 4.081807 ACGTCACTGTAATTTACTCCCTCC 60.082 45.833 7.99 0.00 0.00 4.30
2044 2067 4.430908 GTCACTGTAATTTACTCCCTCCG 58.569 47.826 7.99 0.00 0.00 4.63
2045 2068 3.118884 TCACTGTAATTTACTCCCTCCGC 60.119 47.826 7.99 0.00 0.00 5.54
2046 2069 2.169978 ACTGTAATTTACTCCCTCCGCC 59.830 50.000 7.99 0.00 0.00 6.13
2047 2070 2.434702 CTGTAATTTACTCCCTCCGCCT 59.565 50.000 7.99 0.00 0.00 5.52
2048 2071 2.433239 TGTAATTTACTCCCTCCGCCTC 59.567 50.000 7.99 0.00 0.00 4.70
2049 2072 1.580059 AATTTACTCCCTCCGCCTCA 58.420 50.000 0.00 0.00 0.00 3.86
2050 2073 1.580059 ATTTACTCCCTCCGCCTCAA 58.420 50.000 0.00 0.00 0.00 3.02
2051 2074 1.354101 TTTACTCCCTCCGCCTCAAA 58.646 50.000 0.00 0.00 0.00 2.69
2052 2075 1.354101 TTACTCCCTCCGCCTCAAAA 58.646 50.000 0.00 0.00 0.00 2.44
2053 2076 1.580059 TACTCCCTCCGCCTCAAAAT 58.420 50.000 0.00 0.00 0.00 1.82
2054 2077 0.035056 ACTCCCTCCGCCTCAAAATG 60.035 55.000 0.00 0.00 0.00 2.32
2055 2078 1.378514 TCCCTCCGCCTCAAAATGC 60.379 57.895 0.00 0.00 0.00 3.56
2056 2079 1.678635 CCCTCCGCCTCAAAATGCA 60.679 57.895 0.00 0.00 0.00 3.96
2057 2080 1.250154 CCCTCCGCCTCAAAATGCAA 61.250 55.000 0.00 0.00 0.00 4.08
2058 2081 0.171903 CCTCCGCCTCAAAATGCAAG 59.828 55.000 0.00 0.00 0.00 4.01
2059 2082 1.167851 CTCCGCCTCAAAATGCAAGA 58.832 50.000 0.00 0.00 0.00 3.02
2060 2083 0.881118 TCCGCCTCAAAATGCAAGAC 59.119 50.000 0.00 0.00 0.00 3.01
2061 2084 0.454957 CCGCCTCAAAATGCAAGACG 60.455 55.000 0.00 0.00 0.00 4.18
2062 2085 0.238289 CGCCTCAAAATGCAAGACGT 59.762 50.000 0.00 0.00 0.00 4.34
2063 2086 1.334960 CGCCTCAAAATGCAAGACGTT 60.335 47.619 0.00 0.00 0.00 3.99
2064 2087 2.742774 GCCTCAAAATGCAAGACGTTT 58.257 42.857 0.00 0.00 39.22 3.60
2065 2088 3.123050 GCCTCAAAATGCAAGACGTTTT 58.877 40.909 0.00 0.00 46.19 2.43
2066 2089 3.555547 GCCTCAAAATGCAAGACGTTTTT 59.444 39.130 0.00 0.00 43.45 1.94
2099 2122 9.952030 TGTGATAGTGGAAAATAACATCTTACA 57.048 29.630 0.00 0.00 0.00 2.41
2105 2128 9.927668 AGTGGAAAATAACATCTTACATTTTGG 57.072 29.630 0.00 0.00 32.29 3.28
2106 2129 9.150348 GTGGAAAATAACATCTTACATTTTGGG 57.850 33.333 0.00 0.00 32.29 4.12
2107 2130 9.094578 TGGAAAATAACATCTTACATTTTGGGA 57.905 29.630 0.00 0.00 32.29 4.37
2108 2131 9.366216 GGAAAATAACATCTTACATTTTGGGAC 57.634 33.333 0.00 0.00 32.29 4.46
2109 2132 8.980143 AAAATAACATCTTACATTTTGGGACG 57.020 30.769 0.00 0.00 31.26 4.79
2110 2133 6.693315 ATAACATCTTACATTTTGGGACGG 57.307 37.500 0.00 0.00 0.00 4.79
2111 2134 4.295141 ACATCTTACATTTTGGGACGGA 57.705 40.909 0.00 0.00 0.00 4.69
2112 2135 4.261801 ACATCTTACATTTTGGGACGGAG 58.738 43.478 0.00 0.00 0.00 4.63
2113 2136 3.343941 TCTTACATTTTGGGACGGAGG 57.656 47.619 0.00 0.00 0.00 4.30
2114 2137 2.026636 TCTTACATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
2115 2138 1.659022 TACATTTTGGGACGGAGGGA 58.341 50.000 0.00 0.00 0.00 4.20
2116 2139 0.328258 ACATTTTGGGACGGAGGGAG 59.672 55.000 0.00 0.00 0.00 4.30
2117 2140 0.328258 CATTTTGGGACGGAGGGAGT 59.672 55.000 0.00 0.00 0.00 3.85
2118 2141 1.557832 CATTTTGGGACGGAGGGAGTA 59.442 52.381 0.00 0.00 0.00 2.59
2119 2142 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
2168 2197 8.574196 CTACCTTGTGGTTGTTATTCAAAAAG 57.426 34.615 0.00 0.00 46.05 2.27
2170 2199 7.616313 ACCTTGTGGTTGTTATTCAAAAAGAA 58.384 30.769 0.00 0.00 46.05 2.52
2344 2533 8.796475 CAATTTCCTTGAGGTCAAATTCTCTTA 58.204 33.333 6.51 0.00 36.97 2.10
2345 2534 7.745620 TTTCCTTGAGGTCAAATTCTCTTAC 57.254 36.000 0.00 0.00 35.15 2.34
2424 2617 6.535508 GGAGACTGTGTCCATGTCTAAAATAC 59.464 42.308 18.26 0.00 40.63 1.89
2425 2618 7.246171 AGACTGTGTCCATGTCTAAAATACT 57.754 36.000 0.00 0.00 39.02 2.12
2426 2619 7.680730 AGACTGTGTCCATGTCTAAAATACTT 58.319 34.615 0.00 0.00 39.02 2.24
2427 2620 8.157476 AGACTGTGTCCATGTCTAAAATACTTT 58.843 33.333 0.00 0.00 39.02 2.66
2484 2682 2.688507 AGATGTTGTTGTCAGCTACCG 58.311 47.619 0.00 0.00 29.54 4.02
2499 2697 4.868171 CAGCTACCGTTTGTTCATTAGCTA 59.132 41.667 0.82 0.00 40.17 3.32
2503 2701 6.687105 GCTACCGTTTGTTCATTAGCTATTTG 59.313 38.462 0.00 0.00 31.23 2.32
2548 3059 8.405418 ACTAATCGCTACTGAGGATGTAATTA 57.595 34.615 0.00 0.00 0.00 1.40
2606 3118 3.586892 CTCCACCGAAAGTAGGAAGAAC 58.413 50.000 0.00 0.00 0.00 3.01
2633 3145 2.254152 AGCTATGGTGAAGTCTGGGA 57.746 50.000 0.00 0.00 0.00 4.37
2744 3256 2.833943 GGCTTTTGGTGGAGGATGATTT 59.166 45.455 0.00 0.00 0.00 2.17
2839 3351 6.403309 GGCGGTCAAATTTTGGTTTGTTTAAA 60.403 34.615 9.18 0.00 39.50 1.52
2889 3401 7.012799 TGCTTAATTATTAACCATCACATGCGA 59.987 33.333 0.00 0.00 0.00 5.10
2890 3402 8.023128 GCTTAATTATTAACCATCACATGCGAT 58.977 33.333 0.00 0.00 0.00 4.58
2985 3505 2.104967 CAGGTCGAGGTATAACCACCA 58.895 52.381 6.80 0.00 41.95 4.17
2994 3514 4.929479 AGGTATAACCACCAAAGATGCAA 58.071 39.130 0.00 0.00 41.95 4.08
3016 3551 3.077339 GCATGTCGCAACACTCAAC 57.923 52.632 0.00 0.00 41.79 3.18
3017 3552 0.588252 GCATGTCGCAACACTCAACT 59.412 50.000 0.00 0.00 41.79 3.16
3018 3553 1.002468 GCATGTCGCAACACTCAACTT 60.002 47.619 0.00 0.00 41.79 2.66
3019 3554 2.541588 GCATGTCGCAACACTCAACTTT 60.542 45.455 0.00 0.00 41.79 2.66
3020 3555 3.291585 CATGTCGCAACACTCAACTTTC 58.708 45.455 0.00 0.00 38.48 2.62
3021 3556 2.627945 TGTCGCAACACTCAACTTTCT 58.372 42.857 0.00 0.00 0.00 2.52
3022 3557 3.006940 TGTCGCAACACTCAACTTTCTT 58.993 40.909 0.00 0.00 0.00 2.52
3023 3558 3.438781 TGTCGCAACACTCAACTTTCTTT 59.561 39.130 0.00 0.00 0.00 2.52
3088 3629 4.645535 TCCTTCAGTTTCTGTCCATGAAG 58.354 43.478 0.00 6.32 44.07 3.02
3153 3694 0.390472 CCGTCCAAAGAGGTGAGAGC 60.390 60.000 0.00 0.00 39.02 4.09
3199 3748 0.321564 TTGGCCGTCAATCTCCACAG 60.322 55.000 0.00 0.00 0.00 3.66
3219 3776 1.737363 GCGGAACTTCTGCTAGACCAG 60.737 57.143 14.42 0.00 45.06 4.00
3221 3778 2.028930 CGGAACTTCTGCTAGACCAGTT 60.029 50.000 0.00 0.00 30.34 3.16
3222 3779 3.330267 GGAACTTCTGCTAGACCAGTTG 58.670 50.000 0.00 0.00 28.46 3.16
3231 3788 4.910195 TGCTAGACCAGTTGAATTGATGT 58.090 39.130 0.00 0.00 0.00 3.06
3243 3800 6.825721 AGTTGAATTGATGTGAGGGAGATAAC 59.174 38.462 0.00 0.00 0.00 1.89
3247 3815 2.430694 TGATGTGAGGGAGATAACCACG 59.569 50.000 0.00 0.00 0.00 4.94
3258 3826 5.221661 GGGAGATAACCACGACTATTTCCAT 60.222 44.000 0.00 0.00 32.76 3.41
3678 4254 2.289882 TGCACAGCAGCTCAGAAACTAT 60.290 45.455 0.00 0.00 33.32 2.12
3764 4340 2.974794 TGGCATGGCAGAGTAGTATGAT 59.025 45.455 19.43 0.00 0.00 2.45
3777 4356 6.992715 AGAGTAGTATGATTTTGGGTGTATGC 59.007 38.462 0.00 0.00 0.00 3.14
3789 4368 3.319405 TGGGTGTATGCGTGTTGAAAAAT 59.681 39.130 0.00 0.00 0.00 1.82
3793 4372 1.417372 ATGCGTGTTGAAAAATGGCG 58.583 45.000 0.00 0.00 0.00 5.69
3826 4406 3.012518 GGATTGTGTGATGAACTCCTGG 58.987 50.000 0.00 0.00 0.00 4.45
3827 4407 3.560025 GGATTGTGTGATGAACTCCTGGT 60.560 47.826 0.00 0.00 0.00 4.00
3828 4408 3.576078 TTGTGTGATGAACTCCTGGTT 57.424 42.857 0.00 0.00 41.40 3.67
3857 4437 4.571176 GCATGCCCTAACTGTAGAAAGTAC 59.429 45.833 6.36 0.00 0.00 2.73
3858 4438 5.627040 GCATGCCCTAACTGTAGAAAGTACT 60.627 44.000 6.36 0.00 0.00 2.73
3859 4439 5.656213 TGCCCTAACTGTAGAAAGTACTC 57.344 43.478 0.00 0.00 0.00 2.59
3860 4440 4.465305 TGCCCTAACTGTAGAAAGTACTCC 59.535 45.833 0.00 0.00 0.00 3.85
3861 4441 4.141981 GCCCTAACTGTAGAAAGTACTCCC 60.142 50.000 0.00 0.00 0.00 4.30
3862 4442 5.270794 CCCTAACTGTAGAAAGTACTCCCT 58.729 45.833 0.00 0.00 0.00 4.20
3863 4443 5.360429 CCCTAACTGTAGAAAGTACTCCCTC 59.640 48.000 0.00 0.00 0.00 4.30
3864 4444 6.189133 CCTAACTGTAGAAAGTACTCCCTCT 58.811 44.000 0.00 1.59 0.00 3.69
3865 4445 5.986501 AACTGTAGAAAGTACTCCCTCTG 57.013 43.478 0.00 0.00 0.00 3.35
3866 4446 5.000570 ACTGTAGAAAGTACTCCCTCTGT 57.999 43.478 0.00 0.00 0.00 3.41
3867 4447 6.137104 ACTGTAGAAAGTACTCCCTCTGTA 57.863 41.667 0.00 0.00 0.00 2.74
3868 4448 6.550163 ACTGTAGAAAGTACTCCCTCTGTAA 58.450 40.000 0.00 0.00 0.00 2.41
3869 4449 7.008941 ACTGTAGAAAGTACTCCCTCTGTAAA 58.991 38.462 0.00 0.00 0.00 2.01
3870 4450 7.674772 ACTGTAGAAAGTACTCCCTCTGTAAAT 59.325 37.037 0.00 0.00 0.00 1.40
3871 4451 8.431910 TGTAGAAAGTACTCCCTCTGTAAATT 57.568 34.615 0.00 0.00 0.00 1.82
3872 4452 9.537852 TGTAGAAAGTACTCCCTCTGTAAATTA 57.462 33.333 0.00 0.00 0.00 1.40
3907 4487 9.886132 ACGTTTAGATAACTAAAATGGTGATCT 57.114 29.630 6.76 0.19 45.97 2.75
3916 4496 8.814038 AACTAAAATGGTGATCTAAATGCTCT 57.186 30.769 0.00 0.00 0.00 4.09
3917 4497 8.814038 ACTAAAATGGTGATCTAAATGCTCTT 57.186 30.769 0.00 0.00 0.00 2.85
3918 4498 9.905713 ACTAAAATGGTGATCTAAATGCTCTTA 57.094 29.630 0.00 0.00 0.00 2.10
3934 4514 9.490379 AAATGCTCTTATATTAGTTTACGGAGG 57.510 33.333 0.00 0.00 0.00 4.30
3935 4515 6.989659 TGCTCTTATATTAGTTTACGGAGGG 58.010 40.000 0.00 0.00 0.00 4.30
3936 4516 6.779049 TGCTCTTATATTAGTTTACGGAGGGA 59.221 38.462 0.00 0.00 0.00 4.20
3937 4517 7.039923 TGCTCTTATATTAGTTTACGGAGGGAG 60.040 40.741 0.00 0.00 0.00 4.30
3938 4518 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
3939 4519 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
3943 4523 6.803366 ATTAGTTTACGGAGGGAGTATGTT 57.197 37.500 0.00 0.00 0.00 2.71
4054 4634 7.371936 TCCCTTTTGGTGTTTAATTTATGTCG 58.628 34.615 0.00 0.00 38.10 4.35
4120 4701 6.483640 CCTCTAGTATTTACTCCAACCAATGC 59.516 42.308 0.00 0.00 37.73 3.56
4127 4708 1.619827 ACTCCAACCAATGCCAACATG 59.380 47.619 0.00 0.00 36.36 3.21
4138 4719 1.342774 TGCCAACATGCATATTCCCCA 60.343 47.619 0.00 0.00 36.04 4.96
4142 4723 3.243941 CCAACATGCATATTCCCCATGTG 60.244 47.826 0.00 2.25 46.25 3.21
4147 4728 2.244510 TGCATATTCCCCATGTGTTCCT 59.755 45.455 0.00 0.00 0.00 3.36
4195 5211 8.217111 TCATTATGAGCCCACATCTTATGTAAA 58.783 33.333 0.00 0.00 42.70 2.01
4244 5260 5.687166 AAATACGGTAGGTCAAAGATCCA 57.313 39.130 0.00 0.00 0.00 3.41
4340 5357 1.264288 CAGAGAAACCGTGGCTTCAAC 59.736 52.381 4.96 0.00 0.00 3.18
4397 5414 1.185315 TACAGCCGTTGGGTAGGTAC 58.815 55.000 0.00 0.00 34.97 3.34
4399 5416 1.272648 ACAGCCGTTGGGTAGGTACTA 60.273 52.381 0.00 0.00 41.75 1.82
4449 5466 4.142534 CCCACTTGCATCAATCAGTGTTAG 60.143 45.833 11.85 0.00 0.00 2.34
4450 5467 4.696877 CCACTTGCATCAATCAGTGTTAGA 59.303 41.667 11.85 0.00 0.00 2.10
4451 5468 5.391310 CCACTTGCATCAATCAGTGTTAGAC 60.391 44.000 11.85 0.00 0.00 2.59
4452 5469 4.389992 ACTTGCATCAATCAGTGTTAGACG 59.610 41.667 0.00 0.00 0.00 4.18
4453 5470 3.261580 TGCATCAATCAGTGTTAGACGG 58.738 45.455 0.00 0.00 0.00 4.79
4454 5471 3.262420 GCATCAATCAGTGTTAGACGGT 58.738 45.455 0.00 0.00 0.00 4.83
4455 5472 3.062639 GCATCAATCAGTGTTAGACGGTG 59.937 47.826 0.00 0.00 0.00 4.94
4456 5473 2.683968 TCAATCAGTGTTAGACGGTGC 58.316 47.619 0.00 0.00 0.00 5.01
4457 5474 2.299013 TCAATCAGTGTTAGACGGTGCT 59.701 45.455 0.00 0.00 0.00 4.40
4458 5475 3.067106 CAATCAGTGTTAGACGGTGCTT 58.933 45.455 0.00 0.00 0.00 3.91
4459 5476 2.148916 TCAGTGTTAGACGGTGCTTG 57.851 50.000 0.00 0.00 0.00 4.01
4460 5477 1.148310 CAGTGTTAGACGGTGCTTGG 58.852 55.000 0.00 0.00 0.00 3.61
4461 5478 1.045407 AGTGTTAGACGGTGCTTGGA 58.955 50.000 0.00 0.00 0.00 3.53
4462 5479 1.623811 AGTGTTAGACGGTGCTTGGAT 59.376 47.619 0.00 0.00 0.00 3.41
4463 5480 2.000447 GTGTTAGACGGTGCTTGGATC 59.000 52.381 0.00 0.00 0.00 3.36
4464 5481 1.066430 TGTTAGACGGTGCTTGGATCC 60.066 52.381 4.20 4.20 0.00 3.36
4465 5482 1.066430 GTTAGACGGTGCTTGGATCCA 60.066 52.381 11.44 11.44 0.00 3.41
4466 5483 1.271856 TAGACGGTGCTTGGATCCAA 58.728 50.000 25.53 25.53 0.00 3.53
4480 5497 7.573968 CTTGGATCCAAGGGACTATTTTTAG 57.426 40.000 37.26 14.87 46.88 1.85
4481 5498 6.652205 TGGATCCAAGGGACTATTTTTAGT 57.348 37.500 13.46 0.00 38.49 2.24
4482 5499 6.659824 TGGATCCAAGGGACTATTTTTAGTC 58.340 40.000 13.46 4.87 44.23 2.59
4483 5500 6.447084 TGGATCCAAGGGACTATTTTTAGTCT 59.553 38.462 13.46 0.00 44.35 3.24
4484 5501 6.768381 GGATCCAAGGGACTATTTTTAGTCTG 59.232 42.308 6.95 4.29 44.35 3.51
4485 5502 6.945636 TCCAAGGGACTATTTTTAGTCTGA 57.054 37.500 11.69 1.60 44.35 3.27
4486 5503 6.708285 TCCAAGGGACTATTTTTAGTCTGAC 58.292 40.000 11.69 0.00 44.35 3.51
4487 5504 6.500751 TCCAAGGGACTATTTTTAGTCTGACT 59.499 38.462 15.57 15.57 44.35 3.41
4488 5505 7.676893 TCCAAGGGACTATTTTTAGTCTGACTA 59.323 37.037 13.34 13.34 44.35 2.59
4489 5506 8.319146 CCAAGGGACTATTTTTAGTCTGACTAA 58.681 37.037 22.80 22.80 44.35 2.24
4490 5507 9.720769 CAAGGGACTATTTTTAGTCTGACTAAA 57.279 33.333 29.65 29.65 42.90 1.85
4509 5526 9.654663 TGACTAAAAATAGTCTCTTTTAGAGGC 57.345 33.333 22.30 14.20 46.94 4.70
4518 5535 6.971527 GTCTCTTTTAGAGGCTAAAGTTCC 57.028 41.667 7.84 0.00 43.38 3.62
4519 5536 6.465084 GTCTCTTTTAGAGGCTAAAGTTCCA 58.535 40.000 7.84 0.00 43.38 3.53
4520 5537 6.935208 GTCTCTTTTAGAGGCTAAAGTTCCAA 59.065 38.462 7.84 0.00 43.38 3.53
4521 5538 7.118535 GTCTCTTTTAGAGGCTAAAGTTCCAAG 59.881 40.741 7.84 0.00 43.38 3.61
4522 5539 5.705905 TCTTTTAGAGGCTAAAGTTCCAAGC 59.294 40.000 7.84 0.00 33.97 4.01
4523 5540 4.634012 TTAGAGGCTAAAGTTCCAAGCA 57.366 40.909 0.00 0.00 38.01 3.91
4524 5541 2.784347 AGAGGCTAAAGTTCCAAGCAC 58.216 47.619 0.00 2.09 38.01 4.40
4525 5542 1.813178 GAGGCTAAAGTTCCAAGCACC 59.187 52.381 0.00 0.00 38.01 5.01
4526 5543 1.144913 AGGCTAAAGTTCCAAGCACCA 59.855 47.619 7.02 0.00 38.01 4.17
4527 5544 1.269723 GGCTAAAGTTCCAAGCACCAC 59.730 52.381 7.02 0.00 38.01 4.16
4528 5545 2.230660 GCTAAAGTTCCAAGCACCACT 58.769 47.619 0.00 0.00 36.26 4.00
4529 5546 2.030805 GCTAAAGTTCCAAGCACCACTG 60.031 50.000 0.00 0.00 36.26 3.66
4530 5547 2.435372 AAAGTTCCAAGCACCACTGA 57.565 45.000 0.00 0.00 0.00 3.41
4531 5548 1.680338 AAGTTCCAAGCACCACTGAC 58.320 50.000 0.00 0.00 0.00 3.51
4532 5549 0.839946 AGTTCCAAGCACCACTGACT 59.160 50.000 0.00 0.00 0.00 3.41
4533 5550 2.047061 AGTTCCAAGCACCACTGACTA 58.953 47.619 0.00 0.00 0.00 2.59
4534 5551 2.438021 AGTTCCAAGCACCACTGACTAA 59.562 45.455 0.00 0.00 0.00 2.24
4535 5552 3.118038 AGTTCCAAGCACCACTGACTAAA 60.118 43.478 0.00 0.00 0.00 1.85
4536 5553 3.126001 TCCAAGCACCACTGACTAAAG 57.874 47.619 0.00 0.00 0.00 1.85
4537 5554 2.703536 TCCAAGCACCACTGACTAAAGA 59.296 45.455 0.00 0.00 0.00 2.52
4538 5555 3.070018 CCAAGCACCACTGACTAAAGAG 58.930 50.000 0.00 0.00 0.00 2.85
4539 5556 3.244215 CCAAGCACCACTGACTAAAGAGA 60.244 47.826 0.00 0.00 0.00 3.10
4540 5557 3.951775 AGCACCACTGACTAAAGAGAG 57.048 47.619 0.00 0.00 0.00 3.20
4541 5558 2.564947 AGCACCACTGACTAAAGAGAGG 59.435 50.000 0.00 0.00 0.00 3.69
4542 5559 2.933056 GCACCACTGACTAAAGAGAGGC 60.933 54.545 0.00 0.00 0.00 4.70
4543 5560 2.564947 CACCACTGACTAAAGAGAGGCT 59.435 50.000 0.00 0.00 0.00 4.58
4544 5561 3.764434 CACCACTGACTAAAGAGAGGCTA 59.236 47.826 0.00 0.00 0.00 3.93
4545 5562 4.020543 ACCACTGACTAAAGAGAGGCTAG 58.979 47.826 0.00 0.00 0.00 3.42
4546 5563 3.383185 CCACTGACTAAAGAGAGGCTAGG 59.617 52.174 0.00 0.00 0.00 3.02
4547 5564 4.274147 CACTGACTAAAGAGAGGCTAGGA 58.726 47.826 0.00 0.00 0.00 2.94
4548 5565 4.097286 CACTGACTAAAGAGAGGCTAGGAC 59.903 50.000 0.00 0.00 0.00 3.85
4549 5566 4.017867 ACTGACTAAAGAGAGGCTAGGACT 60.018 45.833 0.00 0.00 0.00 3.85
4550 5567 5.192121 ACTGACTAAAGAGAGGCTAGGACTA 59.808 44.000 0.00 0.00 0.00 2.59
4551 5568 5.686753 TGACTAAAGAGAGGCTAGGACTAG 58.313 45.833 1.98 1.98 36.29 2.57
4552 5569 5.192121 TGACTAAAGAGAGGCTAGGACTAGT 59.808 44.000 0.00 0.00 35.65 2.57
4553 5570 5.687780 ACTAAAGAGAGGCTAGGACTAGTC 58.312 45.833 14.87 14.87 38.03 2.59
4559 5576 3.306472 AGGCTAGGACTAGTCTTGAGG 57.694 52.381 21.88 10.56 45.03 3.86
4560 5577 1.684450 GGCTAGGACTAGTCTTGAGGC 59.316 57.143 21.88 21.38 35.06 4.70
4561 5578 2.661718 GCTAGGACTAGTCTTGAGGCT 58.338 52.381 21.88 11.79 35.65 4.58
4562 5579 3.435313 GGCTAGGACTAGTCTTGAGGCTA 60.435 52.174 24.87 16.06 35.06 3.93
4563 5580 4.208746 GCTAGGACTAGTCTTGAGGCTAA 58.791 47.826 21.88 0.00 35.65 3.09
4564 5581 4.645588 GCTAGGACTAGTCTTGAGGCTAAA 59.354 45.833 21.88 0.00 35.65 1.85
4565 5582 5.127356 GCTAGGACTAGTCTTGAGGCTAAAA 59.873 44.000 21.88 0.00 35.65 1.52
4566 5583 6.183360 GCTAGGACTAGTCTTGAGGCTAAAAT 60.183 42.308 21.88 0.00 35.65 1.82
4567 5584 6.228616 AGGACTAGTCTTGAGGCTAAAATC 57.771 41.667 21.88 0.73 0.00 2.17
4568 5585 5.961421 AGGACTAGTCTTGAGGCTAAAATCT 59.039 40.000 21.88 3.06 0.00 2.40
4569 5586 6.442244 AGGACTAGTCTTGAGGCTAAAATCTT 59.558 38.462 21.88 0.00 0.00 2.40
4570 5587 7.037945 AGGACTAGTCTTGAGGCTAAAATCTTT 60.038 37.037 21.88 0.00 0.00 2.52
4571 5588 7.608376 GGACTAGTCTTGAGGCTAAAATCTTTT 59.392 37.037 21.88 0.00 0.00 2.27
4572 5589 9.654663 GACTAGTCTTGAGGCTAAAATCTTTTA 57.345 33.333 15.91 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 7.014449 TCCCTAAGAATCATTCCTACGGATTA 58.986 38.462 0.00 0.00 31.77 1.75
43 44 8.311395 GGAAAATTTCCCTAAGAATCATTCCT 57.689 34.615 13.61 0.00 44.30 3.36
293 294 0.453782 GTGCGCGTCCAACCATTTAC 60.454 55.000 8.43 0.00 0.00 2.01
294 295 1.579084 GGTGCGCGTCCAACCATTTA 61.579 55.000 8.43 0.00 0.00 1.40
296 297 3.361977 GGTGCGCGTCCAACCATT 61.362 61.111 8.43 0.00 0.00 3.16
366 367 5.683770 GCTGACCAAGTTTGTTACCCAAAAT 60.684 40.000 0.00 0.00 44.36 1.82
368 369 3.131400 GCTGACCAAGTTTGTTACCCAAA 59.869 43.478 0.00 0.00 40.71 3.28
370 371 2.303175 GCTGACCAAGTTTGTTACCCA 58.697 47.619 0.00 0.00 0.00 4.51
385 386 2.656560 ACGTGAGTAGAATGGCTGAC 57.343 50.000 0.00 0.00 46.88 3.51
403 404 7.587757 GTGTCAATACTTCATGAAACTTCACAC 59.412 37.037 9.88 11.47 40.49 3.82
451 452 8.980481 AGAATAGTAAGGTCCCAATTGTATTG 57.020 34.615 4.43 0.00 0.00 1.90
452 453 9.990868 AAAGAATAGTAAGGTCCCAATTGTATT 57.009 29.630 4.43 0.00 0.00 1.89
492 493 9.906660 AAATGACAAAGTCGAAGCAATATTAAA 57.093 25.926 0.00 0.00 34.95 1.52
494 495 9.906660 AAAAATGACAAAGTCGAAGCAATATTA 57.093 25.926 0.00 0.00 34.95 0.98
516 517 3.231818 TCCTTGTTATTCGGGGCAAAAA 58.768 40.909 0.00 0.00 0.00 1.94
546 547 3.304123 CCCGCGTATGAAGTTTCACAAAA 60.304 43.478 4.92 0.00 40.49 2.44
563 564 4.456911 TCTTAGTCAATAGGTATACCCGCG 59.543 45.833 18.65 0.00 38.74 6.46
637 639 7.431084 CGCGCACCTTTTATGAATAGTAAATTT 59.569 33.333 8.75 0.00 0.00 1.82
641 643 4.871557 ACGCGCACCTTTTATGAATAGTAA 59.128 37.500 5.73 0.00 0.00 2.24
657 659 2.257286 AAGCATGATTCCACGCGCAC 62.257 55.000 5.73 0.00 36.47 5.34
669 671 3.006940 GACGTGGATTTGGTAAGCATGA 58.993 45.455 0.00 0.00 0.00 3.07
676 678 5.999205 TTTACTAGGACGTGGATTTGGTA 57.001 39.130 0.00 0.00 0.00 3.25
678 680 6.753107 AAATTTACTAGGACGTGGATTTGG 57.247 37.500 0.00 0.00 0.00 3.28
714 716 6.474751 GCTCATGGCTCTTTGATTTAATTCAC 59.525 38.462 0.00 0.00 38.06 3.18
778 781 9.738832 GTTCTCTATGTTCTCCTAGAAACATAC 57.261 37.037 15.50 8.92 35.75 2.39
779 782 9.475620 TGTTCTCTATGTTCTCCTAGAAACATA 57.524 33.333 17.18 17.18 35.75 2.29
780 783 8.367660 TGTTCTCTATGTTCTCCTAGAAACAT 57.632 34.615 16.89 16.89 35.75 2.71
782 785 8.057536 TCTGTTCTCTATGTTCTCCTAGAAAC 57.942 38.462 0.00 0.00 35.75 2.78
783 786 7.891183 ACTCTGTTCTCTATGTTCTCCTAGAAA 59.109 37.037 0.00 0.00 35.75 2.52
784 787 7.338196 CACTCTGTTCTCTATGTTCTCCTAGAA 59.662 40.741 0.00 0.00 0.00 2.10
785 788 6.826231 CACTCTGTTCTCTATGTTCTCCTAGA 59.174 42.308 0.00 0.00 0.00 2.43
786 789 6.826231 TCACTCTGTTCTCTATGTTCTCCTAG 59.174 42.308 0.00 0.00 0.00 3.02
815 818 2.507102 CGCGCCACTTCTGATCGT 60.507 61.111 0.00 0.00 0.00 3.73
816 819 2.960957 ATCCGCGCCACTTCTGATCG 62.961 60.000 0.00 0.00 0.00 3.69
826 829 0.670239 CATGCTATACATCCGCGCCA 60.670 55.000 0.00 0.00 36.64 5.69
827 830 0.670546 ACATGCTATACATCCGCGCC 60.671 55.000 0.00 0.00 36.64 6.53
829 832 0.439985 GCACATGCTATACATCCGCG 59.560 55.000 0.00 0.00 36.64 6.46
830 833 0.798776 GGCACATGCTATACATCCGC 59.201 55.000 3.48 0.00 36.64 5.54
831 834 2.462456 AGGCACATGCTATACATCCG 57.538 50.000 3.48 0.00 36.64 4.18
833 836 8.553459 AAATTAGTAGGCACATGCTATACATC 57.447 34.615 16.65 0.00 36.64 3.06
835 838 8.746052 AAAAATTAGTAGGCACATGCTATACA 57.254 30.769 16.65 3.80 41.70 2.29
837 840 8.836413 GTGAAAAATTAGTAGGCACATGCTATA 58.164 33.333 3.48 0.00 41.70 1.31
838 841 7.201821 GGTGAAAAATTAGTAGGCACATGCTAT 60.202 37.037 3.48 0.00 41.70 2.97
839 842 6.094881 GGTGAAAAATTAGTAGGCACATGCTA 59.905 38.462 3.48 0.00 41.70 3.49
840 843 5.105756 GGTGAAAAATTAGTAGGCACATGCT 60.106 40.000 3.48 0.00 41.70 3.79
841 844 5.102313 GGTGAAAAATTAGTAGGCACATGC 58.898 41.667 0.00 0.00 41.14 4.06
842 845 5.106317 ACGGTGAAAAATTAGTAGGCACATG 60.106 40.000 0.00 0.00 0.00 3.21
843 846 5.007682 ACGGTGAAAAATTAGTAGGCACAT 58.992 37.500 0.00 0.00 0.00 3.21
844 847 4.214545 CACGGTGAAAAATTAGTAGGCACA 59.785 41.667 0.74 0.00 0.00 4.57
845 848 4.719040 CACGGTGAAAAATTAGTAGGCAC 58.281 43.478 0.74 0.00 0.00 5.01
846 849 3.189702 GCACGGTGAAAAATTAGTAGGCA 59.810 43.478 13.29 0.00 0.00 4.75
847 850 3.427098 GGCACGGTGAAAAATTAGTAGGC 60.427 47.826 13.29 0.00 0.00 3.93
848 851 3.754323 TGGCACGGTGAAAAATTAGTAGG 59.246 43.478 13.29 0.00 0.00 3.18
849 852 4.214545 TGTGGCACGGTGAAAAATTAGTAG 59.785 41.667 13.29 0.00 0.00 2.57
850 853 4.023878 GTGTGGCACGGTGAAAAATTAGTA 60.024 41.667 13.29 0.00 0.00 1.82
851 854 2.952978 TGTGGCACGGTGAAAAATTAGT 59.047 40.909 13.29 0.00 0.00 2.24
852 855 3.305110 GTGTGGCACGGTGAAAAATTAG 58.695 45.455 13.29 0.00 0.00 1.73
853 856 2.034812 GGTGTGGCACGGTGAAAAATTA 59.965 45.455 13.29 0.00 34.83 1.40
854 857 1.202475 GGTGTGGCACGGTGAAAAATT 60.202 47.619 13.29 0.00 34.83 1.82
855 858 0.387565 GGTGTGGCACGGTGAAAAAT 59.612 50.000 13.29 0.00 34.83 1.82
971 987 4.250431 GTGTGCGTTGGCGTGCTT 62.250 61.111 0.00 0.00 44.10 3.91
1087 1103 2.747686 GGCCTCGAACCCTGAACA 59.252 61.111 0.00 0.00 0.00 3.18
1302 1321 3.195002 GCGCCGTTGCAGATGCTA 61.195 61.111 6.35 0.00 42.66 3.49
1488 1507 1.153086 GGCGCTCTGATCCAATGGT 60.153 57.895 7.64 0.00 0.00 3.55
1672 1691 3.938334 GTGAAATGAGAGGGAGAAGAAGC 59.062 47.826 0.00 0.00 0.00 3.86
1836 1855 1.164041 CCTGGGTTTTCGTCGTTGCT 61.164 55.000 0.00 0.00 0.00 3.91
1839 1858 2.248835 CGCCTGGGTTTTCGTCGTT 61.249 57.895 0.00 0.00 0.00 3.85
1856 1875 3.068691 TTCTCCTCCTCCACCGCG 61.069 66.667 0.00 0.00 0.00 6.46
2037 2060 1.378514 GCATTTTGAGGCGGAGGGA 60.379 57.895 0.00 0.00 0.00 4.20
2038 2061 1.250154 TTGCATTTTGAGGCGGAGGG 61.250 55.000 0.00 0.00 0.00 4.30
2039 2062 0.171903 CTTGCATTTTGAGGCGGAGG 59.828 55.000 0.00 0.00 0.00 4.30
2040 2063 1.135575 GTCTTGCATTTTGAGGCGGAG 60.136 52.381 0.00 0.00 0.00 4.63
2041 2064 0.881118 GTCTTGCATTTTGAGGCGGA 59.119 50.000 0.00 0.00 0.00 5.54
2042 2065 0.454957 CGTCTTGCATTTTGAGGCGG 60.455 55.000 1.43 0.00 35.08 6.13
2043 2066 0.238289 ACGTCTTGCATTTTGAGGCG 59.762 50.000 7.75 7.75 43.55 5.52
2044 2067 2.422276 AACGTCTTGCATTTTGAGGC 57.578 45.000 0.00 0.00 0.00 4.70
2073 2096 9.952030 TGTAAGATGTTATTTTCCACTATCACA 57.048 29.630 0.00 0.00 0.00 3.58
2079 2102 9.927668 CCAAAATGTAAGATGTTATTTTCCACT 57.072 29.630 0.00 0.00 32.21 4.00
2080 2103 9.150348 CCCAAAATGTAAGATGTTATTTTCCAC 57.850 33.333 0.00 0.00 32.21 4.02
2081 2104 9.094578 TCCCAAAATGTAAGATGTTATTTTCCA 57.905 29.630 0.00 0.00 32.21 3.53
2082 2105 9.366216 GTCCCAAAATGTAAGATGTTATTTTCC 57.634 33.333 0.00 0.00 32.21 3.13
2083 2106 9.072294 CGTCCCAAAATGTAAGATGTTATTTTC 57.928 33.333 0.00 0.00 32.21 2.29
2084 2107 8.032451 CCGTCCCAAAATGTAAGATGTTATTTT 58.968 33.333 0.00 0.00 34.17 1.82
2085 2108 7.394923 TCCGTCCCAAAATGTAAGATGTTATTT 59.605 33.333 0.00 0.00 0.00 1.40
2086 2109 6.887545 TCCGTCCCAAAATGTAAGATGTTATT 59.112 34.615 0.00 0.00 0.00 1.40
2087 2110 6.419791 TCCGTCCCAAAATGTAAGATGTTAT 58.580 36.000 0.00 0.00 0.00 1.89
2088 2111 5.806818 TCCGTCCCAAAATGTAAGATGTTA 58.193 37.500 0.00 0.00 0.00 2.41
2089 2112 4.658063 TCCGTCCCAAAATGTAAGATGTT 58.342 39.130 0.00 0.00 0.00 2.71
2090 2113 4.261801 CTCCGTCCCAAAATGTAAGATGT 58.738 43.478 0.00 0.00 0.00 3.06
2091 2114 3.627577 CCTCCGTCCCAAAATGTAAGATG 59.372 47.826 0.00 0.00 0.00 2.90
2092 2115 3.371595 CCCTCCGTCCCAAAATGTAAGAT 60.372 47.826 0.00 0.00 0.00 2.40
2093 2116 2.026636 CCCTCCGTCCCAAAATGTAAGA 60.027 50.000 0.00 0.00 0.00 2.10
2094 2117 2.026636 TCCCTCCGTCCCAAAATGTAAG 60.027 50.000 0.00 0.00 0.00 2.34
2095 2118 1.986631 TCCCTCCGTCCCAAAATGTAA 59.013 47.619 0.00 0.00 0.00 2.41
2096 2119 1.557832 CTCCCTCCGTCCCAAAATGTA 59.442 52.381 0.00 0.00 0.00 2.29
2097 2120 0.328258 CTCCCTCCGTCCCAAAATGT 59.672 55.000 0.00 0.00 0.00 2.71
2098 2121 0.328258 ACTCCCTCCGTCCCAAAATG 59.672 55.000 0.00 0.00 0.00 2.32
2099 2122 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
2100 2123 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
2101 2124 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
2102 2125 0.115745 AAGTACTCCCTCCGTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
2103 2126 1.002069 TAAGTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
2104 2127 1.064091 AGTAAGTACTCCCTCCGTCCC 60.064 57.143 0.00 0.00 0.00 4.46
2105 2128 2.433662 AGTAAGTACTCCCTCCGTCC 57.566 55.000 0.00 0.00 0.00 4.79
2106 2129 5.008514 GTGATTAGTAAGTACTCCCTCCGTC 59.991 48.000 0.00 0.00 37.73 4.79
2107 2130 4.886489 GTGATTAGTAAGTACTCCCTCCGT 59.114 45.833 0.00 0.00 37.73 4.69
2108 2131 5.131784 AGTGATTAGTAAGTACTCCCTCCG 58.868 45.833 0.00 0.00 37.73 4.63
2109 2132 6.606395 TCAAGTGATTAGTAAGTACTCCCTCC 59.394 42.308 0.00 0.00 37.73 4.30
2110 2133 7.642082 TCAAGTGATTAGTAAGTACTCCCTC 57.358 40.000 0.00 0.00 37.73 4.30
2111 2134 6.097129 GCTCAAGTGATTAGTAAGTACTCCCT 59.903 42.308 0.00 0.00 37.73 4.20
2112 2135 6.274579 GCTCAAGTGATTAGTAAGTACTCCC 58.725 44.000 0.00 0.00 37.73 4.30
2113 2136 5.972382 CGCTCAAGTGATTAGTAAGTACTCC 59.028 44.000 0.00 0.00 37.73 3.85
2114 2137 6.553524 ACGCTCAAGTGATTAGTAAGTACTC 58.446 40.000 0.00 0.00 37.73 2.59
2115 2138 6.512342 ACGCTCAAGTGATTAGTAAGTACT 57.488 37.500 0.00 0.00 40.24 2.73
2116 2139 7.470900 AGTACGCTCAAGTGATTAGTAAGTAC 58.529 38.462 0.00 0.00 0.00 2.73
2117 2140 7.621428 AGTACGCTCAAGTGATTAGTAAGTA 57.379 36.000 0.00 0.00 0.00 2.24
2118 2141 6.512342 AGTACGCTCAAGTGATTAGTAAGT 57.488 37.500 0.00 0.00 0.00 2.24
2119 2142 7.695820 AGTAGTACGCTCAAGTGATTAGTAAG 58.304 38.462 0.00 0.00 0.00 2.34
2168 2197 5.766222 AGCAAAGTCTTCACACATGAATTC 58.234 37.500 0.00 0.00 43.92 2.17
2170 2199 5.068198 ACAAGCAAAGTCTTCACACATGAAT 59.932 36.000 0.00 0.00 43.92 2.57
2344 2533 3.596214 CATGCTAACCGTCCAAGTTAGT 58.404 45.455 11.19 0.00 45.53 2.24
2345 2534 2.351726 GCATGCTAACCGTCCAAGTTAG 59.648 50.000 11.37 6.36 46.20 2.34
2392 2581 0.674534 GGACACAGTCTCCAGAACGT 59.325 55.000 0.00 0.00 32.47 3.99
2397 2586 1.898472 AGACATGGACACAGTCTCCAG 59.102 52.381 3.69 0.00 41.24 3.86
2499 2697 9.726438 AGTAGCTAATGAACTTGTCTAACAAAT 57.274 29.630 0.00 0.00 37.69 2.32
2548 3059 8.487028 AGCTAGCAAAAAGTCCAACTACTATAT 58.513 33.333 18.83 0.00 0.00 0.86
2606 3118 0.030773 TTCACCATAGCTAGCTCGCG 59.969 55.000 23.26 11.78 34.40 5.87
2744 3256 2.752354 CCGCACCTTCCATTGATTAACA 59.248 45.455 0.00 0.00 0.00 2.41
2889 3401 0.324614 TGATCTGTCCACCGCACAAT 59.675 50.000 0.00 0.00 0.00 2.71
2890 3402 0.602638 GTGATCTGTCCACCGCACAA 60.603 55.000 0.00 0.00 0.00 3.33
3009 3529 9.631452 AAAGAAAGAAAGAAAGAAAGTTGAGTG 57.369 29.630 0.00 0.00 0.00 3.51
3013 3548 9.846248 TCTGAAAGAAAGAAAGAAAGAAAGTTG 57.154 29.630 0.00 0.00 42.31 3.16
3016 3551 8.404765 AGCTCTGAAAGAAAGAAAGAAAGAAAG 58.595 33.333 0.00 0.00 46.34 2.62
3017 3552 8.186821 CAGCTCTGAAAGAAAGAAAGAAAGAAA 58.813 33.333 0.00 0.00 46.34 2.52
3018 3553 7.554118 TCAGCTCTGAAAGAAAGAAAGAAAGAA 59.446 33.333 0.00 0.00 46.34 2.52
3019 3554 7.050377 TCAGCTCTGAAAGAAAGAAAGAAAGA 58.950 34.615 0.00 0.00 46.34 2.52
3020 3555 7.256756 TCAGCTCTGAAAGAAAGAAAGAAAG 57.743 36.000 0.00 0.00 46.34 2.62
3021 3556 7.630242 TTCAGCTCTGAAAGAAAGAAAGAAA 57.370 32.000 9.66 0.00 46.34 2.52
3040 3575 5.642063 TGCACAGGTTATTAGTTAGTTCAGC 59.358 40.000 0.00 0.00 0.00 4.26
3057 3592 3.057736 CAGAAACTGAAGGAATGCACAGG 60.058 47.826 4.94 0.00 35.08 4.00
3058 3593 3.567164 ACAGAAACTGAAGGAATGCACAG 59.433 43.478 5.76 0.00 35.18 3.66
3088 3629 2.932614 CTGAGGATTCATGGTCGACAAC 59.067 50.000 18.91 0.81 31.68 3.32
3130 3671 0.902531 TCACCTCTTTGGACGGGATC 59.097 55.000 0.00 0.00 39.71 3.36
3182 3731 2.109126 GCTGTGGAGATTGACGGCC 61.109 63.158 0.00 0.00 38.35 6.13
3199 3748 0.246635 TGGTCTAGCAGAAGTTCCGC 59.753 55.000 2.68 2.68 0.00 5.54
3212 3761 5.491070 CCTCACATCAATTCAACTGGTCTA 58.509 41.667 0.00 0.00 0.00 2.59
3219 3776 6.038714 GGTTATCTCCCTCACATCAATTCAAC 59.961 42.308 0.00 0.00 0.00 3.18
3221 3778 5.191522 TGGTTATCTCCCTCACATCAATTCA 59.808 40.000 0.00 0.00 0.00 2.57
3222 3779 5.529060 GTGGTTATCTCCCTCACATCAATTC 59.471 44.000 0.00 0.00 0.00 2.17
3231 3788 2.526888 AGTCGTGGTTATCTCCCTCA 57.473 50.000 0.00 0.00 0.00 3.86
3243 3800 5.364778 TGGTTCATATGGAAATAGTCGTGG 58.635 41.667 2.13 0.00 37.23 4.94
3247 3815 6.150140 GCCATCTGGTTCATATGGAAATAGTC 59.850 42.308 14.06 0.00 39.50 2.59
3258 3826 2.042686 GCACTGCCATCTGGTTCATA 57.957 50.000 0.00 0.00 37.57 2.15
3351 3919 0.250901 GGTCTTGCTCCCAGCTGAAA 60.251 55.000 17.39 1.00 42.97 2.69
3678 4254 7.173390 TCGTTTGTCATGTGGTAATGATTGTTA 59.827 33.333 0.00 0.00 38.76 2.41
3754 4330 5.758296 CGCATACACCCAAAATCATACTACT 59.242 40.000 0.00 0.00 0.00 2.57
3764 4340 2.298610 TCAACACGCATACACCCAAAA 58.701 42.857 0.00 0.00 0.00 2.44
3777 4356 2.574322 CTCTCGCCATTTTTCAACACG 58.426 47.619 0.00 0.00 0.00 4.49
3793 4372 2.003548 ACAATCCCTGGCCCCTCTC 61.004 63.158 0.00 0.00 0.00 3.20
3881 4461 9.886132 AGATCACCATTTTAGTTATCTAAACGT 57.114 29.630 5.64 0.00 43.20 3.99
3890 4470 9.905713 AGAGCATTTAGATCACCATTTTAGTTA 57.094 29.630 0.00 0.00 34.30 2.24
3891 4471 8.814038 AGAGCATTTAGATCACCATTTTAGTT 57.186 30.769 0.00 0.00 34.30 2.24
3892 4472 8.814038 AAGAGCATTTAGATCACCATTTTAGT 57.186 30.769 0.00 0.00 34.30 2.24
3908 4488 9.490379 CCTCCGTAAACTAATATAAGAGCATTT 57.510 33.333 0.00 0.00 0.00 2.32
3909 4489 8.095169 CCCTCCGTAAACTAATATAAGAGCATT 58.905 37.037 0.00 0.00 0.00 3.56
3910 4490 7.453752 TCCCTCCGTAAACTAATATAAGAGCAT 59.546 37.037 0.00 0.00 0.00 3.79
3911 4491 6.779049 TCCCTCCGTAAACTAATATAAGAGCA 59.221 38.462 0.00 0.00 0.00 4.26
3912 4492 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
3913 4493 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
3916 4496 9.592196 ACATACTCCCTCCGTAAACTAATATAA 57.408 33.333 0.00 0.00 0.00 0.98
3917 4497 9.592196 AACATACTCCCTCCGTAAACTAATATA 57.408 33.333 0.00 0.00 0.00 0.86
3918 4498 8.365647 CAACATACTCCCTCCGTAAACTAATAT 58.634 37.037 0.00 0.00 0.00 1.28
3919 4499 7.342799 ACAACATACTCCCTCCGTAAACTAATA 59.657 37.037 0.00 0.00 0.00 0.98
3920 4500 6.155737 ACAACATACTCCCTCCGTAAACTAAT 59.844 38.462 0.00 0.00 0.00 1.73
3921 4501 5.481473 ACAACATACTCCCTCCGTAAACTAA 59.519 40.000 0.00 0.00 0.00 2.24
3922 4502 5.018809 ACAACATACTCCCTCCGTAAACTA 58.981 41.667 0.00 0.00 0.00 2.24
3923 4503 3.836562 ACAACATACTCCCTCCGTAAACT 59.163 43.478 0.00 0.00 0.00 2.66
3924 4504 3.930848 CACAACATACTCCCTCCGTAAAC 59.069 47.826 0.00 0.00 0.00 2.01
3925 4505 3.055675 CCACAACATACTCCCTCCGTAAA 60.056 47.826 0.00 0.00 0.00 2.01
3926 4506 2.498481 CCACAACATACTCCCTCCGTAA 59.502 50.000 0.00 0.00 0.00 3.18
3927 4507 2.104967 CCACAACATACTCCCTCCGTA 58.895 52.381 0.00 0.00 0.00 4.02
3928 4508 0.902531 CCACAACATACTCCCTCCGT 59.097 55.000 0.00 0.00 0.00 4.69
3929 4509 0.902531 ACCACAACATACTCCCTCCG 59.097 55.000 0.00 0.00 0.00 4.63
3930 4510 3.105283 ACTACCACAACATACTCCCTCC 58.895 50.000 0.00 0.00 0.00 4.30
3931 4511 4.820894 AACTACCACAACATACTCCCTC 57.179 45.455 0.00 0.00 0.00 4.30
3932 4512 4.844655 AGAAACTACCACAACATACTCCCT 59.155 41.667 0.00 0.00 0.00 4.20
3933 4513 5.161943 AGAAACTACCACAACATACTCCC 57.838 43.478 0.00 0.00 0.00 4.30
3934 4514 5.790593 TGAGAAACTACCACAACATACTCC 58.209 41.667 0.00 0.00 0.00 3.85
3935 4515 6.147328 GGTTGAGAAACTACCACAACATACTC 59.853 42.308 0.00 0.00 42.39 2.59
3936 4516 5.995897 GGTTGAGAAACTACCACAACATACT 59.004 40.000 0.00 0.00 42.39 2.12
3937 4517 5.180680 GGGTTGAGAAACTACCACAACATAC 59.819 44.000 0.00 0.00 44.09 2.39
3938 4518 5.310451 GGGTTGAGAAACTACCACAACATA 58.690 41.667 0.00 0.00 44.09 2.29
3939 4519 4.142038 GGGTTGAGAAACTACCACAACAT 58.858 43.478 0.00 0.00 44.09 2.71
3943 4523 1.071071 CCGGGTTGAGAAACTACCACA 59.929 52.381 0.00 0.00 44.09 4.17
4120 4701 2.967201 ACATGGGGAATATGCATGTTGG 59.033 45.455 13.93 0.00 33.27 3.77
4127 4708 2.949447 AGGAACACATGGGGAATATGC 58.051 47.619 0.00 0.00 0.00 3.14
4195 5211 7.294720 TGATCCACTGTTGGGGAAATATAGTAT 59.705 37.037 0.00 0.00 44.11 2.12
4397 5414 8.053026 TGGTTCTAACTTCTAAGCACTAGTAG 57.947 38.462 0.00 0.00 32.64 2.57
4399 5416 6.912951 TGGTTCTAACTTCTAAGCACTAGT 57.087 37.500 0.00 0.00 0.00 2.57
4400 5417 7.542824 GTCTTGGTTCTAACTTCTAAGCACTAG 59.457 40.741 0.00 0.00 30.96 2.57
4401 5418 7.376615 GTCTTGGTTCTAACTTCTAAGCACTA 58.623 38.462 0.00 0.00 30.96 2.74
4402 5419 6.224584 GTCTTGGTTCTAACTTCTAAGCACT 58.775 40.000 0.00 0.00 30.96 4.40
4404 5421 5.512576 GGGTCTTGGTTCTAACTTCTAAGCA 60.513 44.000 0.00 0.00 0.00 3.91
4405 5422 4.936411 GGGTCTTGGTTCTAACTTCTAAGC 59.064 45.833 0.00 0.00 0.00 3.09
4406 5423 5.932883 GTGGGTCTTGGTTCTAACTTCTAAG 59.067 44.000 0.00 0.00 0.00 2.18
4407 5424 5.605488 AGTGGGTCTTGGTTCTAACTTCTAA 59.395 40.000 0.00 0.00 0.00 2.10
4408 5425 5.152934 AGTGGGTCTTGGTTCTAACTTCTA 58.847 41.667 0.00 0.00 0.00 2.10
4409 5426 3.974642 AGTGGGTCTTGGTTCTAACTTCT 59.025 43.478 0.00 0.00 0.00 2.85
4410 5427 4.353383 AGTGGGTCTTGGTTCTAACTTC 57.647 45.455 0.00 0.00 0.00 3.01
4411 5428 4.461198 CAAGTGGGTCTTGGTTCTAACTT 58.539 43.478 0.00 0.00 46.85 2.66
4412 5429 4.086706 CAAGTGGGTCTTGGTTCTAACT 57.913 45.455 0.00 0.00 46.85 2.24
4449 5466 2.471255 CTTGGATCCAAGCACCGTC 58.529 57.895 35.47 0.00 45.38 4.79
4450 5467 4.722193 CTTGGATCCAAGCACCGT 57.278 55.556 35.47 0.00 45.38 4.83
4456 5473 7.283354 GACTAAAAATAGTCCCTTGGATCCAAG 59.717 40.741 37.68 37.68 42.75 3.61
4457 5474 7.036863 AGACTAAAAATAGTCCCTTGGATCCAA 60.037 37.037 25.53 25.53 45.66 3.53
4458 5475 6.447084 AGACTAAAAATAGTCCCTTGGATCCA 59.553 38.462 11.44 11.44 45.66 3.41
4459 5476 6.768381 CAGACTAAAAATAGTCCCTTGGATCC 59.232 42.308 4.20 4.20 45.66 3.36
4460 5477 7.496263 GTCAGACTAAAAATAGTCCCTTGGATC 59.504 40.741 11.35 0.00 45.66 3.36
4461 5478 7.182930 AGTCAGACTAAAAATAGTCCCTTGGAT 59.817 37.037 0.00 0.00 45.66 3.41
4462 5479 6.500751 AGTCAGACTAAAAATAGTCCCTTGGA 59.499 38.462 0.00 1.82 45.66 3.53
4463 5480 6.712276 AGTCAGACTAAAAATAGTCCCTTGG 58.288 40.000 0.00 0.00 45.66 3.61
4464 5481 9.720769 TTTAGTCAGACTAAAAATAGTCCCTTG 57.279 33.333 26.93 5.29 44.84 3.61
4483 5500 9.654663 GCCTCTAAAAGAGACTATTTTTAGTCA 57.345 33.333 12.70 4.01 45.07 3.41
4484 5501 9.878667 AGCCTCTAAAAGAGACTATTTTTAGTC 57.121 33.333 12.70 5.24 45.07 2.59
4491 5508 9.878667 GAACTTTAGCCTCTAAAAGAGACTATT 57.121 33.333 5.50 0.00 45.07 1.73
4492 5509 8.479689 GGAACTTTAGCCTCTAAAAGAGACTAT 58.520 37.037 5.50 0.00 45.07 2.12
4493 5510 7.453752 TGGAACTTTAGCCTCTAAAAGAGACTA 59.546 37.037 5.50 0.91 45.07 2.59
4494 5511 6.270231 TGGAACTTTAGCCTCTAAAAGAGACT 59.730 38.462 5.50 1.89 45.07 3.24
4495 5512 6.465084 TGGAACTTTAGCCTCTAAAAGAGAC 58.535 40.000 5.50 0.00 45.07 3.36
4496 5513 6.681729 TGGAACTTTAGCCTCTAAAAGAGA 57.318 37.500 5.50 0.00 45.07 3.10
4497 5514 6.128145 GCTTGGAACTTTAGCCTCTAAAAGAG 60.128 42.308 2.08 0.00 41.96 2.85
4498 5515 5.705905 GCTTGGAACTTTAGCCTCTAAAAGA 59.294 40.000 2.08 0.00 36.43 2.52
4499 5516 5.473504 TGCTTGGAACTTTAGCCTCTAAAAG 59.526 40.000 0.00 0.00 38.41 2.27
4500 5517 5.240844 GTGCTTGGAACTTTAGCCTCTAAAA 59.759 40.000 0.00 0.00 34.03 1.52
4501 5518 4.760204 GTGCTTGGAACTTTAGCCTCTAAA 59.240 41.667 0.00 0.00 34.03 1.85
4502 5519 4.324267 GTGCTTGGAACTTTAGCCTCTAA 58.676 43.478 0.00 0.00 34.03 2.10
4503 5520 3.307480 GGTGCTTGGAACTTTAGCCTCTA 60.307 47.826 0.00 0.00 34.03 2.43
4504 5521 2.553247 GGTGCTTGGAACTTTAGCCTCT 60.553 50.000 0.00 0.00 34.03 3.69
4505 5522 1.813178 GGTGCTTGGAACTTTAGCCTC 59.187 52.381 0.00 0.00 34.03 4.70
4506 5523 1.144913 TGGTGCTTGGAACTTTAGCCT 59.855 47.619 0.00 0.00 34.03 4.58
4507 5524 1.269723 GTGGTGCTTGGAACTTTAGCC 59.730 52.381 0.00 0.00 34.03 3.93
4508 5525 2.030805 CAGTGGTGCTTGGAACTTTAGC 60.031 50.000 0.00 0.00 35.50 3.09
4509 5526 3.251004 GTCAGTGGTGCTTGGAACTTTAG 59.749 47.826 0.00 0.00 0.00 1.85
4510 5527 3.118038 AGTCAGTGGTGCTTGGAACTTTA 60.118 43.478 0.00 0.00 0.00 1.85
4511 5528 2.024414 GTCAGTGGTGCTTGGAACTTT 58.976 47.619 0.00 0.00 0.00 2.66
4512 5529 1.212935 AGTCAGTGGTGCTTGGAACTT 59.787 47.619 0.00 0.00 0.00 2.66
4513 5530 0.839946 AGTCAGTGGTGCTTGGAACT 59.160 50.000 0.00 0.00 0.00 3.01
4514 5531 2.543777 TAGTCAGTGGTGCTTGGAAC 57.456 50.000 0.00 0.00 0.00 3.62
4515 5532 3.135712 TCTTTAGTCAGTGGTGCTTGGAA 59.864 43.478 0.00 0.00 0.00 3.53
4516 5533 2.703536 TCTTTAGTCAGTGGTGCTTGGA 59.296 45.455 0.00 0.00 0.00 3.53
4517 5534 3.070018 CTCTTTAGTCAGTGGTGCTTGG 58.930 50.000 0.00 0.00 0.00 3.61
4518 5535 3.993081 CTCTCTTTAGTCAGTGGTGCTTG 59.007 47.826 0.00 0.00 0.00 4.01
4519 5536 3.007398 CCTCTCTTTAGTCAGTGGTGCTT 59.993 47.826 0.00 0.00 0.00 3.91
4520 5537 2.564947 CCTCTCTTTAGTCAGTGGTGCT 59.435 50.000 0.00 0.00 0.00 4.40
4521 5538 2.933056 GCCTCTCTTTAGTCAGTGGTGC 60.933 54.545 0.00 0.00 0.00 5.01
4522 5539 2.564947 AGCCTCTCTTTAGTCAGTGGTG 59.435 50.000 0.00 0.00 0.00 4.17
4523 5540 2.896039 AGCCTCTCTTTAGTCAGTGGT 58.104 47.619 0.00 0.00 0.00 4.16
4524 5541 3.383185 CCTAGCCTCTCTTTAGTCAGTGG 59.617 52.174 0.00 0.00 0.00 4.00
4525 5542 4.097286 GTCCTAGCCTCTCTTTAGTCAGTG 59.903 50.000 0.00 0.00 0.00 3.66
4526 5543 4.017867 AGTCCTAGCCTCTCTTTAGTCAGT 60.018 45.833 0.00 0.00 0.00 3.41
4527 5544 4.532834 AGTCCTAGCCTCTCTTTAGTCAG 58.467 47.826 0.00 0.00 0.00 3.51
4528 5545 4.594675 AGTCCTAGCCTCTCTTTAGTCA 57.405 45.455 0.00 0.00 0.00 3.41
4529 5546 5.687780 ACTAGTCCTAGCCTCTCTTTAGTC 58.312 45.833 1.22 0.00 36.66 2.59
4530 5547 5.430745 AGACTAGTCCTAGCCTCTCTTTAGT 59.569 44.000 19.38 0.00 36.66 2.24
4531 5548 5.937111 AGACTAGTCCTAGCCTCTCTTTAG 58.063 45.833 19.38 0.00 36.66 1.85
4532 5549 5.979656 AGACTAGTCCTAGCCTCTCTTTA 57.020 43.478 19.38 0.00 36.66 1.85
4533 5550 4.873724 AGACTAGTCCTAGCCTCTCTTT 57.126 45.455 19.38 0.00 36.66 2.52
4534 5551 4.228666 TCAAGACTAGTCCTAGCCTCTCTT 59.771 45.833 19.38 0.17 36.66 2.85
4535 5552 3.783642 TCAAGACTAGTCCTAGCCTCTCT 59.216 47.826 19.38 0.00 36.66 3.10
4536 5553 4.134563 CTCAAGACTAGTCCTAGCCTCTC 58.865 52.174 19.38 0.00 36.66 3.20
4537 5554 3.117663 CCTCAAGACTAGTCCTAGCCTCT 60.118 52.174 19.38 0.00 36.66 3.69
4538 5555 3.219281 CCTCAAGACTAGTCCTAGCCTC 58.781 54.545 19.38 0.00 36.66 4.70
4539 5556 2.688515 GCCTCAAGACTAGTCCTAGCCT 60.689 54.545 19.38 0.00 36.66 4.58
4540 5557 1.684450 GCCTCAAGACTAGTCCTAGCC 59.316 57.143 19.38 0.89 36.66 3.93
4541 5558 2.661718 AGCCTCAAGACTAGTCCTAGC 58.338 52.381 19.38 14.54 36.66 3.42
4542 5559 6.777213 TTTTAGCCTCAAGACTAGTCCTAG 57.223 41.667 19.38 13.33 39.04 3.02
4543 5560 7.126733 AGATTTTAGCCTCAAGACTAGTCCTA 58.873 38.462 19.38 9.39 0.00 2.94
4544 5561 5.961421 AGATTTTAGCCTCAAGACTAGTCCT 59.039 40.000 19.38 10.36 0.00 3.85
4545 5562 6.228616 AGATTTTAGCCTCAAGACTAGTCC 57.771 41.667 19.38 2.89 0.00 3.85
4546 5563 8.554835 AAAAGATTTTAGCCTCAAGACTAGTC 57.445 34.615 15.41 15.41 0.00 2.59
4547 5564 9.660180 CTAAAAGATTTTAGCCTCAAGACTAGT 57.340 33.333 11.10 0.00 41.97 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.