Multiple sequence alignment - TraesCS2B01G292300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G292300 chr2B 100.000 3563 0 0 1 3563 406539419 406542981 0.000000e+00 6580.0
1 TraesCS2B01G292300 chr2D 91.442 1262 47 27 1797 3029 340695819 340697048 0.000000e+00 1676.0
2 TraesCS2B01G292300 chr2D 91.209 1092 52 9 748 1800 340694429 340695515 0.000000e+00 1445.0
3 TraesCS2B01G292300 chr2D 89.098 743 51 14 1 727 381560641 381559913 0.000000e+00 896.0
4 TraesCS2B01G292300 chr2D 95.161 124 6 0 3243 3366 340697084 340697207 2.810000e-46 196.0
5 TraesCS2B01G292300 chr2A 91.715 1207 52 21 837 2019 450536493 450535311 0.000000e+00 1631.0
6 TraesCS2B01G292300 chr2A 91.616 990 48 16 2066 3029 450535313 450534333 0.000000e+00 1336.0
7 TraesCS2B01G292300 chr2A 90.027 742 55 10 1 727 535841588 535842325 0.000000e+00 942.0
8 TraesCS2B01G292300 chr2A 89.680 562 48 10 67 623 100118544 100117988 0.000000e+00 708.0
9 TraesCS2B01G292300 chr2A 87.692 130 11 1 3243 3372 450534297 450534173 2.870000e-31 147.0
10 TraesCS2B01G292300 chr6B 97.083 720 16 5 3 719 569371130 569370413 0.000000e+00 1208.0
11 TraesCS2B01G292300 chr6B 89.271 727 67 10 1 722 49732743 49732023 0.000000e+00 900.0
12 TraesCS2B01G292300 chr3A 90.483 746 50 12 1 727 678036785 678037528 0.000000e+00 965.0
13 TraesCS2B01G292300 chr3A 89.785 744 52 17 1 727 604498452 604497716 0.000000e+00 931.0
14 TraesCS2B01G292300 chr3A 89.222 733 64 13 3 727 716061201 716060476 0.000000e+00 902.0
15 TraesCS2B01G292300 chr3A 92.667 150 11 0 3025 3174 97191961 97192110 2.150000e-52 217.0
16 TraesCS2B01G292300 chr3A 92.453 53 3 1 1668 1720 599997144 599997093 1.370000e-09 75.0
17 TraesCS2B01G292300 chr3B 90.162 742 54 10 1 727 610216935 610216198 0.000000e+00 948.0
18 TraesCS2B01G292300 chr1A 89.812 746 53 11 1 727 181550930 181550189 0.000000e+00 935.0
19 TraesCS2B01G292300 chr4A 88.725 745 63 10 1 727 698806108 698806849 0.000000e+00 891.0
20 TraesCS2B01G292300 chr4A 97.222 144 4 0 3027 3170 674948703 674948846 9.880000e-61 244.0
21 TraesCS2B01G292300 chr5A 86.066 732 77 13 1 727 112108531 112109242 0.000000e+00 763.0
22 TraesCS2B01G292300 chr1B 96.528 144 5 0 3027 3170 13036331 13036188 4.600000e-59 239.0
23 TraesCS2B01G292300 chr1B 100.000 28 0 0 3371 3398 680783565 680783592 6.000000e-03 52.8
24 TraesCS2B01G292300 chr7B 95.302 149 7 0 3025 3173 47786606 47786458 1.650000e-58 237.0
25 TraesCS2B01G292300 chr7B 92.568 148 11 0 3025 3172 655740277 655740424 2.790000e-51 213.0
26 TraesCS2B01G292300 chrUn 95.890 146 5 1 3029 3174 47762002 47761858 5.950000e-58 235.0
27 TraesCS2B01G292300 chrUn 100.000 28 0 0 3371 3398 27121646 27121673 6.000000e-03 52.8
28 TraesCS2B01G292300 chr5B 95.833 144 5 1 3029 3172 616680650 616680792 7.690000e-57 231.0
29 TraesCS2B01G292300 chr5B 92.617 149 9 2 3029 3176 54712454 54712601 2.790000e-51 213.0
30 TraesCS2B01G292300 chr5B 82.558 86 11 2 3373 3454 177019459 177019544 4.930000e-09 73.1
31 TraesCS2B01G292300 chr3D 93.836 146 8 1 3029 3174 299088253 299088397 5.990000e-53 219.0
32 TraesCS2B01G292300 chr1D 89.333 75 7 1 3447 3520 431096018 431096092 3.790000e-15 93.5
33 TraesCS2B01G292300 chr1D 84.146 82 10 3 1659 1739 413769150 413769071 3.810000e-10 76.8
34 TraesCS2B01G292300 chr7D 85.714 63 7 2 1659 1720 629451350 629451289 8.260000e-07 65.8
35 TraesCS2B01G292300 chr5D 97.297 37 1 0 3243 3279 13633001 13633037 2.970000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G292300 chr2B 406539419 406542981 3562 False 6580.000000 6580 100.000 1 3563 1 chr2B.!!$F1 3562
1 TraesCS2B01G292300 chr2D 340694429 340697207 2778 False 1105.666667 1676 92.604 748 3366 3 chr2D.!!$F1 2618
2 TraesCS2B01G292300 chr2D 381559913 381560641 728 True 896.000000 896 89.098 1 727 1 chr2D.!!$R1 726
3 TraesCS2B01G292300 chr2A 450534173 450536493 2320 True 1038.000000 1631 90.341 837 3372 3 chr2A.!!$R2 2535
4 TraesCS2B01G292300 chr2A 535841588 535842325 737 False 942.000000 942 90.027 1 727 1 chr2A.!!$F1 726
5 TraesCS2B01G292300 chr2A 100117988 100118544 556 True 708.000000 708 89.680 67 623 1 chr2A.!!$R1 556
6 TraesCS2B01G292300 chr6B 569370413 569371130 717 True 1208.000000 1208 97.083 3 719 1 chr6B.!!$R2 716
7 TraesCS2B01G292300 chr6B 49732023 49732743 720 True 900.000000 900 89.271 1 722 1 chr6B.!!$R1 721
8 TraesCS2B01G292300 chr3A 678036785 678037528 743 False 965.000000 965 90.483 1 727 1 chr3A.!!$F2 726
9 TraesCS2B01G292300 chr3A 604497716 604498452 736 True 931.000000 931 89.785 1 727 1 chr3A.!!$R2 726
10 TraesCS2B01G292300 chr3A 716060476 716061201 725 True 902.000000 902 89.222 3 727 1 chr3A.!!$R3 724
11 TraesCS2B01G292300 chr3B 610216198 610216935 737 True 948.000000 948 90.162 1 727 1 chr3B.!!$R1 726
12 TraesCS2B01G292300 chr1A 181550189 181550930 741 True 935.000000 935 89.812 1 727 1 chr1A.!!$R1 726
13 TraesCS2B01G292300 chr4A 698806108 698806849 741 False 891.000000 891 88.725 1 727 1 chr4A.!!$F2 726
14 TraesCS2B01G292300 chr5A 112108531 112109242 711 False 763.000000 763 86.066 1 727 1 chr5A.!!$F1 726

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
911 949 0.623911 TCCTCTCTCCTCCGGTACCT 60.624 60.0 10.9 0.0 0.0 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2757 3154 0.603707 CCTGACGTGGTCACATTGCT 60.604 55.0 0.0 0.0 37.67 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 2.422479 TCATAGTCGTCTGGTGTAGTGC 59.578 50.000 0.00 0.00 0.00 4.40
72 73 1.621814 GTCTGGTGTAGTGCCTACCAA 59.378 52.381 9.12 0.00 43.36 3.67
574 612 0.985760 TTGTGTTATAGTGGGCCGGT 59.014 50.000 1.90 0.00 0.00 5.28
585 623 0.699399 TGGGCCGGTCCAAATTCTAA 59.301 50.000 29.58 0.00 36.21 2.10
636 674 4.589908 GGATTGTAGTCTTCCCAATGTGT 58.410 43.478 0.00 0.00 0.00 3.72
651 689 4.504864 CCAATGTGTCAAACAGGTCTAGGA 60.505 45.833 0.00 0.00 43.64 2.94
663 701 7.698163 AACAGGTCTAGGATCCAAAATAGAT 57.302 36.000 15.82 0.00 0.00 1.98
711 749 1.982226 TCCGGGATTCAAAGTTCAGGA 59.018 47.619 0.00 0.00 0.00 3.86
716 754 5.594317 CCGGGATTCAAAGTTCAGGATTTAT 59.406 40.000 0.00 0.00 0.00 1.40
732 770 9.292195 TCAGGATTTATTTTAGACTTTTTCCGT 57.708 29.630 0.00 0.00 0.00 4.69
733 771 9.908152 CAGGATTTATTTTAGACTTTTTCCGTT 57.092 29.630 0.00 0.00 0.00 4.44
741 779 9.810545 ATTTTAGACTTTTTCCGTTTGATTTGA 57.189 25.926 0.00 0.00 0.00 2.69
742 780 9.810545 TTTTAGACTTTTTCCGTTTGATTTGAT 57.189 25.926 0.00 0.00 0.00 2.57
743 781 8.795786 TTAGACTTTTTCCGTTTGATTTGATG 57.204 30.769 0.00 0.00 0.00 3.07
744 782 5.691754 AGACTTTTTCCGTTTGATTTGATGC 59.308 36.000 0.00 0.00 0.00 3.91
745 783 5.355596 ACTTTTTCCGTTTGATTTGATGCA 58.644 33.333 0.00 0.00 0.00 3.96
746 784 5.234116 ACTTTTTCCGTTTGATTTGATGCAC 59.766 36.000 0.00 0.00 0.00 4.57
760 798 2.226200 TGATGCACCTGTTGTCAATTCG 59.774 45.455 0.00 0.00 0.00 3.34
773 811 2.388232 AATTCGTCGGAAGCGTGCC 61.388 57.895 0.00 0.00 35.19 5.01
790 828 1.627550 GCCTTTCACTCGAGCGGAAC 61.628 60.000 13.61 1.92 0.00 3.62
911 949 0.623911 TCCTCTCTCCTCCGGTACCT 60.624 60.000 10.90 0.00 0.00 3.08
945 983 3.504520 GCCTCGTCTTCTCCCTATTCTAG 59.495 52.174 0.00 0.00 0.00 2.43
993 1031 1.227002 TGCGCGAGTGTGTGTTACA 60.227 52.632 12.10 0.00 36.82 2.41
998 1038 2.739292 GCGAGTGTGTGTTACAGAGAA 58.261 47.619 0.00 0.00 40.69 2.87
1013 1053 3.439476 ACAGAGAAGATGAATGCTGTTGC 59.561 43.478 0.00 0.00 33.19 4.17
1208 1263 5.944007 TGAACCTCTCTTTGGTTATTTAGCC 59.056 40.000 0.00 0.00 46.59 3.93
1477 1539 5.350504 TTTGTCTTCTTTTGGGCAAATCA 57.649 34.783 0.00 0.00 0.00 2.57
1504 1566 3.321968 TGCTGCTTCTGTGACTCTTTCTA 59.678 43.478 0.00 0.00 0.00 2.10
1505 1567 3.925913 GCTGCTTCTGTGACTCTTTCTAG 59.074 47.826 0.00 0.00 0.00 2.43
1506 1568 4.560513 GCTGCTTCTGTGACTCTTTCTAGT 60.561 45.833 0.00 0.00 0.00 2.57
1524 1586 9.589111 CTTTCTAGTAGTCTCCTTTTACATTCC 57.411 37.037 0.00 0.00 0.00 3.01
1548 1610 5.067023 CCAAGGATGGTGAGCTCTTTATTTC 59.933 44.000 16.19 4.56 42.18 2.17
1572 1636 4.646572 ACTTCTTGGAGGATCAGTTGTTC 58.353 43.478 0.00 0.00 36.25 3.18
1623 1687 5.971202 GTCACATAAAACACACCTGAAGTTG 59.029 40.000 0.00 0.00 0.00 3.16
1657 1721 5.949354 TGTATTCCTTTGACCTACCCAAATG 59.051 40.000 0.00 0.00 33.62 2.32
1777 1861 7.073883 CACAATTGCTCACGAAATCCATATAG 58.926 38.462 5.05 0.00 0.00 1.31
1840 2232 7.287005 CAGAGGTCTGTAATAGGTATGGTAACA 59.713 40.741 0.00 0.00 45.17 2.41
1964 2356 8.752005 TCTTGCTTATATGAAGGCAAAACTAT 57.248 30.769 0.00 0.00 42.76 2.12
2050 2446 2.890945 TGGAGAAAGCAACTAAAAGGCC 59.109 45.455 0.00 0.00 0.00 5.19
2074 2470 5.865085 TGTACCATAATTCATACTGCCCTC 58.135 41.667 0.00 0.00 0.00 4.30
2104 2500 4.178545 ACATTTGTGCTGCCAATAGAAC 57.821 40.909 0.00 0.00 0.00 3.01
2145 2541 7.229106 AGTCTGTAGGCTGTAGCTACTTTATAC 59.771 40.741 23.84 19.30 41.70 1.47
2146 2542 7.229106 GTCTGTAGGCTGTAGCTACTTTATACT 59.771 40.741 23.84 14.77 41.70 2.12
2147 2543 7.444792 TCTGTAGGCTGTAGCTACTTTATACTC 59.555 40.741 23.84 8.88 41.70 2.59
2165 2561 2.106566 CTCCACCTGTAGCTCATCTGT 58.893 52.381 0.00 0.00 0.00 3.41
2168 2564 2.499289 CCACCTGTAGCTCATCTGTCTT 59.501 50.000 0.00 0.00 0.00 3.01
2235 2632 2.529136 CAGGTGGGTGAGGTGGGA 60.529 66.667 0.00 0.00 0.00 4.37
2370 2767 2.573869 CGCCTCTCGGACATGTGT 59.426 61.111 1.15 0.00 33.78 3.72
2466 2863 2.273449 CCATCCAAGAAGGGCGCT 59.727 61.111 7.64 0.00 38.24 5.92
2545 2942 1.967779 TCCACACCAACGAGATCAAGA 59.032 47.619 0.00 0.00 0.00 3.02
2566 2963 4.938226 AGAAGGAACATGCTAGCTAACAAC 59.062 41.667 17.23 2.68 0.00 3.32
2684 3081 4.455533 TGGTTAGCAATGTGATCAGAACAC 59.544 41.667 3.85 3.85 38.55 3.32
2906 3303 2.401766 GCCAGCCAACGGATCACAG 61.402 63.158 0.00 0.00 0.00 3.66
2941 3362 1.479709 ATCCTCTCGGAGACCAACAG 58.520 55.000 2.97 0.00 44.06 3.16
2986 3407 6.695278 TGCATTTAACAACTTTACAGCAAGAC 59.305 34.615 0.00 0.00 0.00 3.01
2988 3409 7.382218 GCATTTAACAACTTTACAGCAAGACAT 59.618 33.333 0.00 0.00 0.00 3.06
3029 3450 8.729805 ATAGCTGGTCTTCAGAAATTCTTTAG 57.270 34.615 0.00 0.00 46.18 1.85
3031 3452 5.392487 GCTGGTCTTCAGAAATTCTTTAGGC 60.392 44.000 0.00 0.00 46.18 3.93
3032 3453 5.010282 TGGTCTTCAGAAATTCTTTAGGCC 58.990 41.667 14.48 14.48 32.56 5.19
3033 3454 5.222130 TGGTCTTCAGAAATTCTTTAGGCCT 60.222 40.000 19.32 11.78 32.92 5.19
3035 3456 6.349694 GGTCTTCAGAAATTCTTTAGGCCTTG 60.350 42.308 12.58 1.50 30.50 3.61
3036 3457 6.207614 GTCTTCAGAAATTCTTTAGGCCTTGT 59.792 38.462 12.58 0.00 0.00 3.16
3038 3459 6.575162 TCAGAAATTCTTTAGGCCTTGTTC 57.425 37.500 12.58 4.66 0.00 3.18
3039 3460 5.181245 TCAGAAATTCTTTAGGCCTTGTTCG 59.819 40.000 12.58 0.00 0.00 3.95
3040 3461 4.459337 AGAAATTCTTTAGGCCTTGTTCGG 59.541 41.667 12.58 0.00 0.00 4.30
3041 3462 2.943036 TTCTTTAGGCCTTGTTCGGT 57.057 45.000 12.58 0.00 0.00 4.69
3042 3463 2.943036 TCTTTAGGCCTTGTTCGGTT 57.057 45.000 12.58 0.00 0.00 4.44
3043 3464 2.500229 TCTTTAGGCCTTGTTCGGTTG 58.500 47.619 12.58 0.00 0.00 3.77
3044 3465 0.955905 TTTAGGCCTTGTTCGGTTGC 59.044 50.000 12.58 0.00 0.00 4.17
3045 3466 0.179015 TTAGGCCTTGTTCGGTTGCA 60.179 50.000 12.58 0.00 0.00 4.08
3046 3467 0.037590 TAGGCCTTGTTCGGTTGCAT 59.962 50.000 12.58 0.00 0.00 3.96
3047 3468 1.212751 GGCCTTGTTCGGTTGCATC 59.787 57.895 0.00 0.00 0.00 3.91
3048 3469 1.523154 GGCCTTGTTCGGTTGCATCA 61.523 55.000 0.00 0.00 0.00 3.07
3049 3470 0.313672 GCCTTGTTCGGTTGCATCAA 59.686 50.000 0.00 0.00 0.00 2.57
3050 3471 1.269517 GCCTTGTTCGGTTGCATCAAA 60.270 47.619 0.00 0.00 0.00 2.69
3051 3472 2.801342 GCCTTGTTCGGTTGCATCAAAA 60.801 45.455 0.00 0.00 0.00 2.44
3052 3473 3.652274 CCTTGTTCGGTTGCATCAAAAT 58.348 40.909 0.00 0.00 0.00 1.82
3053 3474 4.057432 CCTTGTTCGGTTGCATCAAAATT 58.943 39.130 0.00 0.00 0.00 1.82
3054 3475 4.084433 CCTTGTTCGGTTGCATCAAAATTG 60.084 41.667 0.00 0.00 0.00 2.32
3055 3476 4.313277 TGTTCGGTTGCATCAAAATTGA 57.687 36.364 0.00 0.00 42.14 2.57
3056 3477 4.686972 TGTTCGGTTGCATCAAAATTGAA 58.313 34.783 0.00 0.00 41.13 2.69
3057 3478 4.744137 TGTTCGGTTGCATCAAAATTGAAG 59.256 37.500 0.00 0.00 41.13 3.02
3058 3479 3.911868 TCGGTTGCATCAAAATTGAAGG 58.088 40.909 0.00 0.00 41.13 3.46
3059 3480 2.995258 CGGTTGCATCAAAATTGAAGGG 59.005 45.455 0.00 0.00 41.13 3.95
3060 3481 3.337358 GGTTGCATCAAAATTGAAGGGG 58.663 45.455 0.00 0.00 41.13 4.79
3061 3482 3.244526 GGTTGCATCAAAATTGAAGGGGT 60.245 43.478 0.00 0.00 41.13 4.95
3062 3483 4.388485 GTTGCATCAAAATTGAAGGGGTT 58.612 39.130 0.00 0.00 41.13 4.11
3063 3484 4.703379 TGCATCAAAATTGAAGGGGTTT 57.297 36.364 0.00 0.00 41.13 3.27
3064 3485 4.387598 TGCATCAAAATTGAAGGGGTTTG 58.612 39.130 0.00 0.00 41.13 2.93
3065 3486 4.102210 TGCATCAAAATTGAAGGGGTTTGA 59.898 37.500 0.00 0.00 42.42 2.69
3066 3487 5.062528 GCATCAAAATTGAAGGGGTTTGAA 58.937 37.500 0.00 0.00 41.77 2.69
3067 3488 5.179929 GCATCAAAATTGAAGGGGTTTGAAG 59.820 40.000 0.00 0.00 41.77 3.02
3068 3489 5.948742 TCAAAATTGAAGGGGTTTGAAGT 57.051 34.783 0.00 0.00 37.12 3.01
3069 3490 5.669477 TCAAAATTGAAGGGGTTTGAAGTG 58.331 37.500 0.00 0.00 37.12 3.16
3070 3491 4.687901 AAATTGAAGGGGTTTGAAGTGG 57.312 40.909 0.00 0.00 0.00 4.00
3071 3492 3.611025 ATTGAAGGGGTTTGAAGTGGA 57.389 42.857 0.00 0.00 0.00 4.02
3072 3493 3.611025 TTGAAGGGGTTTGAAGTGGAT 57.389 42.857 0.00 0.00 0.00 3.41
3073 3494 3.611025 TGAAGGGGTTTGAAGTGGATT 57.389 42.857 0.00 0.00 0.00 3.01
3074 3495 3.230134 TGAAGGGGTTTGAAGTGGATTG 58.770 45.455 0.00 0.00 0.00 2.67
3075 3496 3.117322 TGAAGGGGTTTGAAGTGGATTGA 60.117 43.478 0.00 0.00 0.00 2.57
3076 3497 3.160679 AGGGGTTTGAAGTGGATTGAG 57.839 47.619 0.00 0.00 0.00 3.02
3077 3498 2.171003 GGGGTTTGAAGTGGATTGAGG 58.829 52.381 0.00 0.00 0.00 3.86
3078 3499 2.490902 GGGGTTTGAAGTGGATTGAGGT 60.491 50.000 0.00 0.00 0.00 3.85
3079 3500 2.558359 GGGTTTGAAGTGGATTGAGGTG 59.442 50.000 0.00 0.00 0.00 4.00
3080 3501 2.558359 GGTTTGAAGTGGATTGAGGTGG 59.442 50.000 0.00 0.00 0.00 4.61
3081 3502 3.486383 GTTTGAAGTGGATTGAGGTGGA 58.514 45.455 0.00 0.00 0.00 4.02
3082 3503 4.082125 GTTTGAAGTGGATTGAGGTGGAT 58.918 43.478 0.00 0.00 0.00 3.41
3083 3504 4.387026 TTGAAGTGGATTGAGGTGGATT 57.613 40.909 0.00 0.00 0.00 3.01
3084 3505 5.512942 TTGAAGTGGATTGAGGTGGATTA 57.487 39.130 0.00 0.00 0.00 1.75
3085 3506 5.512942 TGAAGTGGATTGAGGTGGATTAA 57.487 39.130 0.00 0.00 0.00 1.40
3086 3507 5.886609 TGAAGTGGATTGAGGTGGATTAAA 58.113 37.500 0.00 0.00 0.00 1.52
3087 3508 6.493166 TGAAGTGGATTGAGGTGGATTAAAT 58.507 36.000 0.00 0.00 0.00 1.40
3088 3509 6.603201 TGAAGTGGATTGAGGTGGATTAAATC 59.397 38.462 0.00 0.00 0.00 2.17
3105 3526 9.750125 GGATTAAATCCCATACAAGTCAAAATC 57.250 33.333 0.00 0.00 43.88 2.17
3108 3529 9.527157 TTAAATCCCATACAAGTCAAAATCTCA 57.473 29.630 0.00 0.00 0.00 3.27
3109 3530 7.396540 AATCCCATACAAGTCAAAATCTCAC 57.603 36.000 0.00 0.00 0.00 3.51
3110 3531 5.253330 TCCCATACAAGTCAAAATCTCACC 58.747 41.667 0.00 0.00 0.00 4.02
3111 3532 4.399303 CCCATACAAGTCAAAATCTCACCC 59.601 45.833 0.00 0.00 0.00 4.61
3112 3533 5.009631 CCATACAAGTCAAAATCTCACCCA 58.990 41.667 0.00 0.00 0.00 4.51
3113 3534 5.476599 CCATACAAGTCAAAATCTCACCCAA 59.523 40.000 0.00 0.00 0.00 4.12
3114 3535 6.153340 CCATACAAGTCAAAATCTCACCCAAT 59.847 38.462 0.00 0.00 0.00 3.16
3115 3536 5.712152 ACAAGTCAAAATCTCACCCAATC 57.288 39.130 0.00 0.00 0.00 2.67
3116 3537 4.524328 ACAAGTCAAAATCTCACCCAATCC 59.476 41.667 0.00 0.00 0.00 3.01
3117 3538 3.701664 AGTCAAAATCTCACCCAATCCC 58.298 45.455 0.00 0.00 0.00 3.85
3118 3539 2.760650 GTCAAAATCTCACCCAATCCCC 59.239 50.000 0.00 0.00 0.00 4.81
3119 3540 2.654385 TCAAAATCTCACCCAATCCCCT 59.346 45.455 0.00 0.00 0.00 4.79
3120 3541 3.026694 CAAAATCTCACCCAATCCCCTC 58.973 50.000 0.00 0.00 0.00 4.30
3121 3542 1.226311 AATCTCACCCAATCCCCTCC 58.774 55.000 0.00 0.00 0.00 4.30
3122 3543 0.046242 ATCTCACCCAATCCCCTCCA 59.954 55.000 0.00 0.00 0.00 3.86
3123 3544 0.178846 TCTCACCCAATCCCCTCCAA 60.179 55.000 0.00 0.00 0.00 3.53
3124 3545 0.704076 CTCACCCAATCCCCTCCAAA 59.296 55.000 0.00 0.00 0.00 3.28
3125 3546 0.407918 TCACCCAATCCCCTCCAAAC 59.592 55.000 0.00 0.00 0.00 2.93
3126 3547 0.614697 CACCCAATCCCCTCCAAACC 60.615 60.000 0.00 0.00 0.00 3.27
3127 3548 0.780090 ACCCAATCCCCTCCAAACCT 60.780 55.000 0.00 0.00 0.00 3.50
3128 3549 0.033109 CCCAATCCCCTCCAAACCTC 60.033 60.000 0.00 0.00 0.00 3.85
3129 3550 1.002857 CCAATCCCCTCCAAACCTCT 58.997 55.000 0.00 0.00 0.00 3.69
3130 3551 1.359130 CCAATCCCCTCCAAACCTCTT 59.641 52.381 0.00 0.00 0.00 2.85
3131 3552 2.621668 CCAATCCCCTCCAAACCTCTTC 60.622 54.545 0.00 0.00 0.00 2.87
3132 3553 2.041620 CAATCCCCTCCAAACCTCTTCA 59.958 50.000 0.00 0.00 0.00 3.02
3133 3554 1.827792 TCCCCTCCAAACCTCTTCAA 58.172 50.000 0.00 0.00 0.00 2.69
3134 3555 2.358258 TCCCCTCCAAACCTCTTCAAT 58.642 47.619 0.00 0.00 0.00 2.57
3135 3556 2.308866 TCCCCTCCAAACCTCTTCAATC 59.691 50.000 0.00 0.00 0.00 2.67
3136 3557 2.621668 CCCCTCCAAACCTCTTCAATCC 60.622 54.545 0.00 0.00 0.00 3.01
3137 3558 2.621668 CCCTCCAAACCTCTTCAATCCC 60.622 54.545 0.00 0.00 0.00 3.85
3138 3559 2.621668 CCTCCAAACCTCTTCAATCCCC 60.622 54.545 0.00 0.00 0.00 4.81
3139 3560 2.310052 CTCCAAACCTCTTCAATCCCCT 59.690 50.000 0.00 0.00 0.00 4.79
3140 3561 2.308866 TCCAAACCTCTTCAATCCCCTC 59.691 50.000 0.00 0.00 0.00 4.30
3141 3562 2.621668 CCAAACCTCTTCAATCCCCTCC 60.622 54.545 0.00 0.00 0.00 4.30
3142 3563 2.041620 CAAACCTCTTCAATCCCCTCCA 59.958 50.000 0.00 0.00 0.00 3.86
3143 3564 1.589414 ACCTCTTCAATCCCCTCCAG 58.411 55.000 0.00 0.00 0.00 3.86
3144 3565 0.842635 CCTCTTCAATCCCCTCCAGG 59.157 60.000 0.00 0.00 0.00 4.45
3145 3566 1.626350 CCTCTTCAATCCCCTCCAGGA 60.626 57.143 0.00 0.00 41.18 3.86
3146 3567 1.767681 CTCTTCAATCCCCTCCAGGAG 59.232 57.143 9.90 9.90 39.95 3.69
3147 3568 1.366082 TCTTCAATCCCCTCCAGGAGA 59.634 52.381 19.21 0.00 39.95 3.71
3148 3569 1.767681 CTTCAATCCCCTCCAGGAGAG 59.232 57.143 19.21 4.11 39.95 3.20
3158 3579 1.689273 CTCCAGGAGAGGTTTATCCGG 59.311 57.143 11.62 0.00 39.75 5.14
3159 3580 1.289830 TCCAGGAGAGGTTTATCCGGA 59.710 52.381 6.61 6.61 39.75 5.14
3160 3581 1.413077 CCAGGAGAGGTTTATCCGGAC 59.587 57.143 6.12 0.00 39.75 4.79
3161 3582 2.108168 CAGGAGAGGTTTATCCGGACA 58.892 52.381 6.12 0.00 39.75 4.02
3162 3583 2.500098 CAGGAGAGGTTTATCCGGACAA 59.500 50.000 6.12 0.00 39.75 3.18
3163 3584 2.766828 AGGAGAGGTTTATCCGGACAAG 59.233 50.000 6.12 0.00 39.75 3.16
3164 3585 2.158943 GGAGAGGTTTATCCGGACAAGG 60.159 54.545 6.12 0.00 41.99 3.61
3165 3586 1.209747 AGAGGTTTATCCGGACAAGGC 59.790 52.381 6.12 0.00 41.99 4.35
3166 3587 0.255033 AGGTTTATCCGGACAAGGCC 59.745 55.000 6.12 8.27 41.99 5.19
3167 3588 0.255033 GGTTTATCCGGACAAGGCCT 59.745 55.000 6.12 0.00 0.00 5.19
3168 3589 1.340697 GGTTTATCCGGACAAGGCCTT 60.341 52.381 13.78 13.78 0.00 4.35
3169 3590 2.092807 GGTTTATCCGGACAAGGCCTTA 60.093 50.000 20.00 0.74 0.00 2.69
3170 3591 3.613030 GTTTATCCGGACAAGGCCTTAA 58.387 45.455 20.00 2.94 0.00 1.85
3171 3592 3.553828 TTATCCGGACAAGGCCTTAAG 57.446 47.619 20.00 9.74 0.00 1.85
3172 3593 0.546598 ATCCGGACAAGGCCTTAAGG 59.453 55.000 20.00 17.81 38.53 2.69
3173 3594 1.077716 CCGGACAAGGCCTTAAGGG 60.078 63.158 20.00 13.31 35.18 3.95
3184 3605 6.192044 CAAGGCCTTAAGGGTAGGAATTTTA 58.808 40.000 20.00 0.00 34.56 1.52
3285 3706 1.811558 GCTTGATTCATAGGCAGCGGA 60.812 52.381 0.00 0.00 0.00 5.54
3296 3717 3.465403 CAGCGGAGTAGCCAGGCT 61.465 66.667 20.63 20.63 43.41 4.58
3366 3787 0.389757 TGTGTAGCCGCAGTACAACA 59.610 50.000 0.00 0.00 32.23 3.33
3368 3789 1.193874 GTGTAGCCGCAGTACAACAAC 59.806 52.381 0.00 0.00 32.23 3.32
3372 3793 0.109781 GCCGCAGTACAACAACATGG 60.110 55.000 0.00 0.00 0.00 3.66
3373 3794 1.234821 CCGCAGTACAACAACATGGT 58.765 50.000 0.00 0.00 0.00 3.55
3374 3795 2.418692 CCGCAGTACAACAACATGGTA 58.581 47.619 0.00 0.00 0.00 3.25
3375 3796 3.006940 CCGCAGTACAACAACATGGTAT 58.993 45.455 0.00 0.00 0.00 2.73
3376 3797 3.438781 CCGCAGTACAACAACATGGTATT 59.561 43.478 0.00 0.00 0.00 1.89
3377 3798 4.632251 CCGCAGTACAACAACATGGTATTA 59.368 41.667 0.00 0.00 0.00 0.98
3378 3799 5.295787 CCGCAGTACAACAACATGGTATTAT 59.704 40.000 0.00 0.00 0.00 1.28
3379 3800 6.183360 CCGCAGTACAACAACATGGTATTATT 60.183 38.462 0.00 0.00 0.00 1.40
3380 3801 7.247728 CGCAGTACAACAACATGGTATTATTT 58.752 34.615 0.00 0.00 0.00 1.40
3381 3802 7.753132 CGCAGTACAACAACATGGTATTATTTT 59.247 33.333 0.00 0.00 0.00 1.82
3382 3803 9.418045 GCAGTACAACAACATGGTATTATTTTT 57.582 29.630 0.00 0.00 0.00 1.94
3399 3820 7.964666 TTATTTTTACTAAATGACCCCTGGG 57.035 36.000 5.50 5.50 42.03 4.45
3400 3821 3.375647 TTTACTAAATGACCCCTGGGC 57.624 47.619 7.39 0.00 39.32 5.36
3401 3822 2.280308 TACTAAATGACCCCTGGGCT 57.720 50.000 7.39 0.00 39.32 5.19
3402 3823 0.625849 ACTAAATGACCCCTGGGCTG 59.374 55.000 7.39 0.00 39.32 4.85
3403 3824 0.753111 CTAAATGACCCCTGGGCTGC 60.753 60.000 7.39 0.00 39.32 5.25
3404 3825 2.223464 TAAATGACCCCTGGGCTGCC 62.223 60.000 11.05 11.05 39.32 4.85
3407 3828 3.015145 GACCCCTGGGCTGCCTTA 61.015 66.667 19.68 7.31 39.32 2.69
3408 3829 2.287194 ACCCCTGGGCTGCCTTAT 60.287 61.111 19.68 0.00 39.32 1.73
3409 3830 1.005556 ACCCCTGGGCTGCCTTATA 59.994 57.895 19.68 2.10 39.32 0.98
3410 3831 0.403453 ACCCCTGGGCTGCCTTATAT 60.403 55.000 19.68 0.00 39.32 0.86
3411 3832 0.779997 CCCCTGGGCTGCCTTATATT 59.220 55.000 19.68 0.00 0.00 1.28
3412 3833 1.548582 CCCCTGGGCTGCCTTATATTG 60.549 57.143 19.68 1.19 0.00 1.90
3413 3834 1.145738 CCCTGGGCTGCCTTATATTGT 59.854 52.381 19.68 0.00 0.00 2.71
3414 3835 2.424812 CCCTGGGCTGCCTTATATTGTT 60.425 50.000 19.68 0.00 0.00 2.83
3415 3836 2.887152 CCTGGGCTGCCTTATATTGTTC 59.113 50.000 19.68 0.00 0.00 3.18
3416 3837 2.549754 CTGGGCTGCCTTATATTGTTCG 59.450 50.000 19.68 0.00 0.00 3.95
3417 3838 1.266989 GGGCTGCCTTATATTGTTCGC 59.733 52.381 19.68 0.00 0.00 4.70
3418 3839 2.222027 GGCTGCCTTATATTGTTCGCT 58.778 47.619 12.43 0.00 0.00 4.93
3419 3840 2.031682 GGCTGCCTTATATTGTTCGCTG 60.032 50.000 12.43 0.00 0.00 5.18
3420 3841 2.872245 GCTGCCTTATATTGTTCGCTGA 59.128 45.455 0.00 0.00 0.00 4.26
3421 3842 3.303395 GCTGCCTTATATTGTTCGCTGAC 60.303 47.826 0.00 0.00 0.00 3.51
3422 3843 4.122776 CTGCCTTATATTGTTCGCTGACT 58.877 43.478 0.00 0.00 0.00 3.41
3423 3844 4.119862 TGCCTTATATTGTTCGCTGACTC 58.880 43.478 0.00 0.00 0.00 3.36
3424 3845 3.495001 GCCTTATATTGTTCGCTGACTCC 59.505 47.826 0.00 0.00 0.00 3.85
3425 3846 4.058817 CCTTATATTGTTCGCTGACTCCC 58.941 47.826 0.00 0.00 0.00 4.30
3426 3847 2.622064 ATATTGTTCGCTGACTCCCC 57.378 50.000 0.00 0.00 0.00 4.81
3427 3848 1.271856 TATTGTTCGCTGACTCCCCA 58.728 50.000 0.00 0.00 0.00 4.96
3428 3849 0.400213 ATTGTTCGCTGACTCCCCAA 59.600 50.000 0.00 0.00 0.00 4.12
3429 3850 0.181587 TTGTTCGCTGACTCCCCAAA 59.818 50.000 0.00 0.00 0.00 3.28
3430 3851 0.181587 TGTTCGCTGACTCCCCAAAA 59.818 50.000 0.00 0.00 0.00 2.44
3431 3852 1.314730 GTTCGCTGACTCCCCAAAAA 58.685 50.000 0.00 0.00 0.00 1.94
3432 3853 1.001706 GTTCGCTGACTCCCCAAAAAC 60.002 52.381 0.00 0.00 0.00 2.43
3433 3854 0.472471 TCGCTGACTCCCCAAAAACT 59.528 50.000 0.00 0.00 0.00 2.66
3434 3855 1.133915 TCGCTGACTCCCCAAAAACTT 60.134 47.619 0.00 0.00 0.00 2.66
3435 3856 2.105134 TCGCTGACTCCCCAAAAACTTA 59.895 45.455 0.00 0.00 0.00 2.24
3436 3857 3.081804 CGCTGACTCCCCAAAAACTTAT 58.918 45.455 0.00 0.00 0.00 1.73
3437 3858 3.506067 CGCTGACTCCCCAAAAACTTATT 59.494 43.478 0.00 0.00 0.00 1.40
3438 3859 4.022329 CGCTGACTCCCCAAAAACTTATTT 60.022 41.667 0.00 0.00 0.00 1.40
3439 3860 5.470368 GCTGACTCCCCAAAAACTTATTTC 58.530 41.667 0.00 0.00 0.00 2.17
3440 3861 5.699097 TGACTCCCCAAAAACTTATTTCG 57.301 39.130 0.00 0.00 0.00 3.46
3441 3862 5.134661 TGACTCCCCAAAAACTTATTTCGT 58.865 37.500 0.00 0.00 0.00 3.85
3442 3863 5.239963 TGACTCCCCAAAAACTTATTTCGTC 59.760 40.000 0.00 0.00 0.00 4.20
3443 3864 4.214758 ACTCCCCAAAAACTTATTTCGTCG 59.785 41.667 0.00 0.00 0.00 5.12
3444 3865 3.058085 TCCCCAAAAACTTATTTCGTCGC 60.058 43.478 0.00 0.00 0.00 5.19
3445 3866 3.057806 CCCCAAAAACTTATTTCGTCGCT 60.058 43.478 0.00 0.00 0.00 4.93
3446 3867 4.542735 CCCAAAAACTTATTTCGTCGCTT 58.457 39.130 0.00 0.00 0.00 4.68
3447 3868 4.381566 CCCAAAAACTTATTTCGTCGCTTG 59.618 41.667 0.00 0.00 0.00 4.01
3448 3869 5.209240 CCAAAAACTTATTTCGTCGCTTGA 58.791 37.500 0.00 0.00 0.00 3.02
3449 3870 5.115021 CCAAAAACTTATTTCGTCGCTTGAC 59.885 40.000 0.00 0.00 39.33 3.18
3450 3871 4.400036 AAACTTATTTCGTCGCTTGACC 57.600 40.909 0.00 0.00 39.56 4.02
3451 3872 2.344025 ACTTATTTCGTCGCTTGACCC 58.656 47.619 0.00 0.00 39.56 4.46
3452 3873 1.664151 CTTATTTCGTCGCTTGACCCC 59.336 52.381 0.00 0.00 39.56 4.95
3453 3874 0.108041 TATTTCGTCGCTTGACCCCC 60.108 55.000 0.00 0.00 39.56 5.40
3454 3875 2.119484 ATTTCGTCGCTTGACCCCCA 62.119 55.000 0.00 0.00 39.56 4.96
3455 3876 2.119484 TTTCGTCGCTTGACCCCCAT 62.119 55.000 0.00 0.00 39.56 4.00
3456 3877 2.046314 CGTCGCTTGACCCCCATT 60.046 61.111 0.00 0.00 39.56 3.16
3457 3878 2.106683 CGTCGCTTGACCCCCATTC 61.107 63.158 0.00 0.00 39.56 2.67
3458 3879 1.002624 GTCGCTTGACCCCCATTCA 60.003 57.895 0.00 0.00 36.58 2.57
3459 3880 1.002624 TCGCTTGACCCCCATTCAC 60.003 57.895 0.00 0.00 0.00 3.18
3460 3881 2.398554 CGCTTGACCCCCATTCACG 61.399 63.158 0.00 0.00 0.00 4.35
3461 3882 2.700773 GCTTGACCCCCATTCACGC 61.701 63.158 0.00 0.00 31.92 5.34
3462 3883 2.034999 TTGACCCCCATTCACGCC 59.965 61.111 0.00 0.00 0.00 5.68
3463 3884 3.910914 TTGACCCCCATTCACGCCG 62.911 63.158 0.00 0.00 0.00 6.46
3471 3892 4.690719 ATTCACGCCGGACCGCAA 62.691 61.111 5.05 0.00 0.00 4.85
3486 3907 3.594775 CAAGGCGCCACACTTGCA 61.595 61.111 31.54 0.00 37.82 4.08
3487 3908 2.598394 AAGGCGCCACACTTGCAT 60.598 55.556 31.54 0.00 0.00 3.96
3488 3909 2.922950 AAGGCGCCACACTTGCATG 61.923 57.895 31.54 0.00 0.00 4.06
3489 3910 3.673484 GGCGCCACACTTGCATGT 61.673 61.111 24.80 0.00 0.00 3.21
3490 3911 2.126734 GCGCCACACTTGCATGTC 60.127 61.111 1.56 0.00 0.00 3.06
3491 3912 2.174107 CGCCACACTTGCATGTCG 59.826 61.111 1.56 0.00 0.00 4.35
3492 3913 2.126734 GCCACACTTGCATGTCGC 60.127 61.111 1.56 0.00 42.89 5.19
3493 3914 2.620112 GCCACACTTGCATGTCGCT 61.620 57.895 1.56 0.00 43.06 4.93
3494 3915 1.208358 CCACACTTGCATGTCGCTG 59.792 57.895 1.56 0.00 43.06 5.18
3495 3916 1.509644 CCACACTTGCATGTCGCTGT 61.510 55.000 1.56 0.00 43.06 4.40
3496 3917 0.385098 CACACTTGCATGTCGCTGTG 60.385 55.000 1.56 4.66 45.06 3.66
3497 3918 1.441515 CACTTGCATGTCGCTGTGC 60.442 57.895 1.56 0.00 43.06 4.57
3498 3919 2.177531 CTTGCATGTCGCTGTGCC 59.822 61.111 0.00 0.00 43.06 5.01
3499 3920 3.656243 CTTGCATGTCGCTGTGCCG 62.656 63.158 0.00 0.00 43.06 5.69
3522 3943 4.812476 CGAGGCGCCATTGACCGA 62.812 66.667 31.54 0.00 0.00 4.69
3523 3944 3.195698 GAGGCGCCATTGACCGAC 61.196 66.667 31.54 4.12 0.00 4.79
3526 3947 3.849953 GCGCCATTGACCGACGAC 61.850 66.667 0.00 0.00 0.00 4.34
3527 3948 3.541831 CGCCATTGACCGACGACG 61.542 66.667 0.00 0.00 39.43 5.12
3528 3949 2.126228 GCCATTGACCGACGACGA 60.126 61.111 9.28 0.00 42.66 4.20
3529 3950 2.442188 GCCATTGACCGACGACGAC 61.442 63.158 9.28 3.29 42.66 4.34
3530 3951 1.804326 CCATTGACCGACGACGACC 60.804 63.158 9.28 0.40 42.66 4.79
3531 3952 1.081041 CATTGACCGACGACGACCA 60.081 57.895 9.28 3.21 42.66 4.02
3532 3953 1.080974 ATTGACCGACGACGACCAC 60.081 57.895 9.28 0.00 42.66 4.16
3533 3954 1.521450 ATTGACCGACGACGACCACT 61.521 55.000 9.28 0.00 42.66 4.00
3534 3955 2.126965 GACCGACGACGACCACTG 60.127 66.667 9.28 0.00 42.66 3.66
3535 3956 3.606065 GACCGACGACGACCACTGG 62.606 68.421 9.28 0.00 42.66 4.00
3538 3959 3.986006 GACGACGACCACTGGCCA 61.986 66.667 4.71 4.71 0.00 5.36
3539 3960 4.295119 ACGACGACCACTGGCCAC 62.295 66.667 0.00 0.00 0.00 5.01
3541 3962 3.936203 GACGACCACTGGCCACCA 61.936 66.667 0.00 0.00 0.00 4.17
3549 3970 4.624364 CTGGCCACCAGCGTGACA 62.624 66.667 0.00 0.00 45.13 3.58
3550 3971 4.624364 TGGCCACCAGCGTGACAG 62.624 66.667 0.00 0.00 43.14 3.51
3551 3972 4.314440 GGCCACCAGCGTGACAGA 62.314 66.667 0.00 0.00 43.14 3.41
3552 3973 3.044305 GCCACCAGCGTGACAGAC 61.044 66.667 0.00 0.00 43.14 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 1.621814 TCGAACTTGGGACTTGGTAGG 59.378 52.381 0.00 0.00 0.00 3.18
72 73 0.680061 GTGGAGTCGAACTTGGGACT 59.320 55.000 0.00 0.00 45.71 3.85
120 129 4.891260 TCTTTCTTTCTCTTAACGGGGAC 58.109 43.478 0.00 0.00 0.00 4.46
121 130 5.556006 TTCTTTCTTTCTCTTAACGGGGA 57.444 39.130 0.00 0.00 0.00 4.81
574 612 3.132289 ACTCTCGCGGATTAGAATTTGGA 59.868 43.478 6.13 0.00 0.00 3.53
585 623 0.752009 TTCCAGCTACTCTCGCGGAT 60.752 55.000 6.13 0.00 32.88 4.18
610 648 0.468648 GGGAAGACTACAATCCCGGG 59.531 60.000 16.85 16.85 43.20 5.73
636 674 5.576563 TTTTGGATCCTAGACCTGTTTGA 57.423 39.130 14.23 0.00 0.00 2.69
651 689 7.518188 ACTTGTAATCCCGATCTATTTTGGAT 58.482 34.615 0.00 0.00 37.42 3.41
663 701 3.616560 GCACTCTGAACTTGTAATCCCGA 60.617 47.826 0.00 0.00 0.00 5.14
716 754 9.810545 ATCAAATCAAACGGAAAAAGTCTAAAA 57.189 25.926 0.00 0.00 0.00 1.52
722 760 5.234116 GTGCATCAAATCAAACGGAAAAAGT 59.766 36.000 0.00 0.00 0.00 2.66
723 761 5.333263 GGTGCATCAAATCAAACGGAAAAAG 60.333 40.000 0.00 0.00 0.00 2.27
726 764 3.320541 AGGTGCATCAAATCAAACGGAAA 59.679 39.130 0.00 0.00 0.00 3.13
727 765 2.890311 AGGTGCATCAAATCAAACGGAA 59.110 40.909 0.00 0.00 0.00 4.30
728 766 2.228582 CAGGTGCATCAAATCAAACGGA 59.771 45.455 0.00 0.00 0.00 4.69
729 767 2.030007 ACAGGTGCATCAAATCAAACGG 60.030 45.455 0.00 0.00 0.00 4.44
730 768 3.287312 ACAGGTGCATCAAATCAAACG 57.713 42.857 0.00 0.00 0.00 3.60
731 769 4.370917 ACAACAGGTGCATCAAATCAAAC 58.629 39.130 0.00 0.00 0.00 2.93
732 770 4.099113 TGACAACAGGTGCATCAAATCAAA 59.901 37.500 0.00 0.00 0.00 2.69
733 771 3.635836 TGACAACAGGTGCATCAAATCAA 59.364 39.130 0.00 0.00 0.00 2.57
734 772 3.220940 TGACAACAGGTGCATCAAATCA 58.779 40.909 0.00 0.00 0.00 2.57
735 773 3.921119 TGACAACAGGTGCATCAAATC 57.079 42.857 0.00 0.00 0.00 2.17
736 774 4.877378 ATTGACAACAGGTGCATCAAAT 57.123 36.364 0.00 0.00 33.29 2.32
737 775 4.619973 GAATTGACAACAGGTGCATCAAA 58.380 39.130 0.00 0.00 33.29 2.69
738 776 3.304592 CGAATTGACAACAGGTGCATCAA 60.305 43.478 0.00 0.00 34.03 2.57
739 777 2.226200 CGAATTGACAACAGGTGCATCA 59.774 45.455 0.00 0.00 0.00 3.07
740 778 2.226437 ACGAATTGACAACAGGTGCATC 59.774 45.455 0.00 0.00 0.00 3.91
741 779 2.226437 GACGAATTGACAACAGGTGCAT 59.774 45.455 0.00 0.00 0.00 3.96
742 780 1.601903 GACGAATTGACAACAGGTGCA 59.398 47.619 0.00 0.00 0.00 4.57
743 781 1.398451 CGACGAATTGACAACAGGTGC 60.398 52.381 0.00 0.00 0.00 5.01
744 782 1.194547 CCGACGAATTGACAACAGGTG 59.805 52.381 0.00 0.00 0.00 4.00
745 783 1.069513 TCCGACGAATTGACAACAGGT 59.930 47.619 0.00 0.00 0.00 4.00
746 784 1.790755 TCCGACGAATTGACAACAGG 58.209 50.000 0.00 0.00 0.00 4.00
760 798 1.959226 TGAAAGGCACGCTTCCGAC 60.959 57.895 0.00 0.00 38.29 4.79
773 811 1.014564 GGGTTCCGCTCGAGTGAAAG 61.015 60.000 27.11 10.79 0.00 2.62
793 831 0.393402 ATTTTAGTTCCGCCCGGTCC 60.393 55.000 6.61 0.00 36.47 4.46
808 846 1.981254 CTGAATGGTGCGCGAATTTT 58.019 45.000 12.10 0.00 0.00 1.82
884 922 0.454196 GAGGAGAGAGGACGACAAGC 59.546 60.000 0.00 0.00 0.00 4.01
911 949 1.961394 AGACGAGGCGGCTTTATATGA 59.039 47.619 14.76 0.00 46.07 2.15
945 983 0.533755 ACTTGCAGAGGCTGTGACAC 60.534 55.000 16.83 0.00 41.91 3.67
993 1031 2.676839 CGCAACAGCATTCATCTTCTCT 59.323 45.455 0.00 0.00 0.00 3.10
998 1038 0.723414 CGACGCAACAGCATTCATCT 59.277 50.000 0.00 0.00 0.00 2.90
1208 1263 9.971922 AATGAATCTACAAGGACAAAGAAAAAG 57.028 29.630 0.00 0.00 0.00 2.27
1347 1407 4.437239 ACAGATCAAACGCAGAAGGATAG 58.563 43.478 0.00 0.00 0.00 2.08
1381 1441 6.128172 CGCCCATTATTTGCTATTCCTAGAAG 60.128 42.308 0.00 0.00 0.00 2.85
1416 1476 4.706842 TTCCTTACCTCATGGAATAGGC 57.293 45.455 0.00 0.00 35.95 3.93
1417 1477 6.841601 TGATTTCCTTACCTCATGGAATAGG 58.158 40.000 0.00 0.00 39.51 2.57
1477 1539 3.887716 AGAGTCACAGAAGCAGCAAAAAT 59.112 39.130 0.00 0.00 0.00 1.82
1504 1566 6.296489 CCTTGGGAATGTAAAAGGAGACTACT 60.296 42.308 0.00 0.00 42.68 2.57
1505 1567 5.880887 CCTTGGGAATGTAAAAGGAGACTAC 59.119 44.000 0.00 0.00 42.68 2.73
1506 1568 5.788533 TCCTTGGGAATGTAAAAGGAGACTA 59.211 40.000 0.00 0.00 42.51 2.59
1548 1610 3.257393 CAACTGATCCTCCAAGAAGTCG 58.743 50.000 0.00 0.00 0.00 4.18
1572 1636 5.427036 AAAACATGAGCAAGCCAAATTTG 57.573 34.783 11.40 11.40 0.00 2.32
1623 1687 7.344134 AGGTCAAAGGAATACAGGGTTATTAC 58.656 38.462 0.00 0.00 0.00 1.89
1657 1721 7.489435 GCAGAGTAAAATAAAAATGAAGGGAGC 59.511 37.037 0.00 0.00 0.00 4.70
1777 1861 2.940158 AGTGGTTTTGGAAGGTACACC 58.060 47.619 0.00 0.00 0.00 4.16
1821 2213 7.159372 GGGTGATGTTACCATACCTATTACAG 58.841 42.308 0.00 0.00 42.69 2.74
1910 2302 9.665719 AAACAAACAAAACAAGAAGTCCAATAT 57.334 25.926 0.00 0.00 0.00 1.28
1911 2303 8.930760 CAAACAAACAAAACAAGAAGTCCAATA 58.069 29.630 0.00 0.00 0.00 1.90
1920 2312 5.107143 GCAAGAGCAAACAAACAAAACAAGA 60.107 36.000 0.00 0.00 41.58 3.02
1964 2356 3.782523 AGGATCCCTGCTTTACTGAATCA 59.217 43.478 8.55 0.00 29.57 2.57
2016 2411 3.679917 GCTTTCTCCAGCACAGCTATGTA 60.680 47.826 0.00 0.00 37.65 2.29
2050 2446 5.869579 AGGGCAGTATGAATTATGGTACAG 58.130 41.667 0.00 0.00 40.69 2.74
2074 2470 2.286536 GCAGCACAAATGTTGGCAAAAG 60.287 45.455 0.00 0.00 37.51 2.27
2104 2500 1.466167 CAGACTTCCGACATTTGCCTG 59.534 52.381 0.00 0.00 0.00 4.85
2115 2511 1.202313 GCTACAGCCTACAGACTTCCG 60.202 57.143 0.00 0.00 34.31 4.30
2145 2541 2.100584 GACAGATGAGCTACAGGTGGAG 59.899 54.545 0.00 0.00 0.00 3.86
2146 2542 2.103373 GACAGATGAGCTACAGGTGGA 58.897 52.381 0.00 0.00 0.00 4.02
2147 2543 2.106566 AGACAGATGAGCTACAGGTGG 58.893 52.381 0.00 0.00 0.00 4.61
2165 2561 3.599343 CACCGGACATGATCAGAAAAGA 58.401 45.455 9.46 0.00 0.00 2.52
2168 2564 1.628340 ACCACCGGACATGATCAGAAA 59.372 47.619 9.46 0.00 0.00 2.52
2235 2632 4.828939 CACTGGAATATCTCAGAGAGCTCT 59.171 45.833 18.28 18.28 41.37 4.09
2370 2767 3.164977 TTGCCCAGGTCGACACCA 61.165 61.111 18.91 3.43 46.68 4.17
2466 2863 2.643272 GTGTCGTCGGAGCAGTGA 59.357 61.111 0.00 0.00 0.00 3.41
2522 2919 0.736325 GATCTCGTTGGTGTGGACGG 60.736 60.000 0.00 0.00 39.59 4.79
2528 2925 2.632996 TCCTTCTTGATCTCGTTGGTGT 59.367 45.455 0.00 0.00 0.00 4.16
2530 2927 3.071023 TGTTCCTTCTTGATCTCGTTGGT 59.929 43.478 0.00 0.00 0.00 3.67
2533 2930 3.686726 GCATGTTCCTTCTTGATCTCGTT 59.313 43.478 0.00 0.00 0.00 3.85
2545 2942 3.684788 CGTTGTTAGCTAGCATGTTCCTT 59.315 43.478 18.83 0.00 0.00 3.36
2566 2963 1.301401 TTTCAGGGTTCAGGACGCG 60.301 57.895 3.53 3.53 45.23 6.01
2631 3028 3.667497 TTGAACTAGACAGTGAGCCAG 57.333 47.619 0.00 0.00 34.36 4.85
2684 3081 5.221362 ACCCTTTTGATTAACGAAAACCAGG 60.221 40.000 0.00 0.00 32.28 4.45
2757 3154 0.603707 CCTGACGTGGTCACATTGCT 60.604 55.000 0.00 0.00 37.67 3.91
2758 3155 0.884704 ACCTGACGTGGTCACATTGC 60.885 55.000 0.00 0.00 37.67 3.56
2759 3156 1.593196 AACCTGACGTGGTCACATTG 58.407 50.000 0.00 0.00 39.83 2.82
2760 3157 2.341846 AAACCTGACGTGGTCACATT 57.658 45.000 0.00 0.00 39.83 2.71
2761 3158 2.218603 GAAAACCTGACGTGGTCACAT 58.781 47.619 0.00 0.00 39.83 3.21
2762 3159 1.066071 TGAAAACCTGACGTGGTCACA 60.066 47.619 0.00 0.00 39.83 3.58
2763 3160 1.658994 TGAAAACCTGACGTGGTCAC 58.341 50.000 0.00 0.00 39.83 3.67
2863 3260 5.323371 TGGCCTATTTACTTGTGAATTGC 57.677 39.130 3.32 1.49 0.00 3.56
2867 3264 3.699038 GCCATGGCCTATTTACTTGTGAA 59.301 43.478 27.24 0.00 34.56 3.18
2906 3303 5.334724 AGAGGATTTTGCATTTCATGACC 57.665 39.130 0.00 0.00 0.00 4.02
2941 3362 1.377987 TATTGCACAAGGGGTCCGC 60.378 57.895 0.00 0.00 0.00 5.54
2974 3395 5.163764 CGGCAGAATAATGTCTTGCTGTAAA 60.164 40.000 0.00 0.00 0.00 2.01
2975 3396 4.332543 CGGCAGAATAATGTCTTGCTGTAA 59.667 41.667 0.00 0.00 0.00 2.41
3013 3434 6.581171 ACAAGGCCTAAAGAATTTCTGAAG 57.419 37.500 5.16 0.97 40.09 3.02
3029 3450 1.212751 GATGCAACCGAACAAGGCC 59.787 57.895 0.00 0.00 33.69 5.19
3031 3452 2.791383 TTTGATGCAACCGAACAAGG 57.209 45.000 0.00 0.00 37.30 3.61
3032 3453 4.744137 TCAATTTTGATGCAACCGAACAAG 59.256 37.500 0.00 0.00 31.01 3.16
3033 3454 4.686972 TCAATTTTGATGCAACCGAACAA 58.313 34.783 0.00 0.00 31.01 2.83
3035 3456 4.150451 CCTTCAATTTTGATGCAACCGAAC 59.850 41.667 0.00 0.00 37.00 3.95
3036 3457 4.305769 CCTTCAATTTTGATGCAACCGAA 58.694 39.130 0.00 0.00 37.00 4.30
3038 3459 2.995258 CCCTTCAATTTTGATGCAACCG 59.005 45.455 0.00 0.00 37.00 4.44
3039 3460 3.244526 ACCCCTTCAATTTTGATGCAACC 60.245 43.478 0.00 0.00 37.00 3.77
3040 3461 4.006780 ACCCCTTCAATTTTGATGCAAC 57.993 40.909 0.00 0.00 37.00 4.17
3041 3462 4.703379 AACCCCTTCAATTTTGATGCAA 57.297 36.364 0.00 0.00 37.00 4.08
3042 3463 4.102210 TCAAACCCCTTCAATTTTGATGCA 59.898 37.500 0.00 0.00 37.00 3.96
3043 3464 4.640364 TCAAACCCCTTCAATTTTGATGC 58.360 39.130 0.00 0.00 37.00 3.91
3044 3465 6.203338 CACTTCAAACCCCTTCAATTTTGATG 59.797 38.462 0.00 0.00 37.69 3.07
3045 3466 6.290605 CACTTCAAACCCCTTCAATTTTGAT 58.709 36.000 0.00 0.00 37.69 2.57
3046 3467 5.396213 CCACTTCAAACCCCTTCAATTTTGA 60.396 40.000 0.00 0.00 36.43 2.69
3047 3468 4.815846 CCACTTCAAACCCCTTCAATTTTG 59.184 41.667 0.00 0.00 0.00 2.44
3048 3469 4.719273 TCCACTTCAAACCCCTTCAATTTT 59.281 37.500 0.00 0.00 0.00 1.82
3049 3470 4.294347 TCCACTTCAAACCCCTTCAATTT 58.706 39.130 0.00 0.00 0.00 1.82
3050 3471 3.922375 TCCACTTCAAACCCCTTCAATT 58.078 40.909 0.00 0.00 0.00 2.32
3051 3472 3.611025 TCCACTTCAAACCCCTTCAAT 57.389 42.857 0.00 0.00 0.00 2.57
3052 3473 3.611025 ATCCACTTCAAACCCCTTCAA 57.389 42.857 0.00 0.00 0.00 2.69
3053 3474 3.117322 TCAATCCACTTCAAACCCCTTCA 60.117 43.478 0.00 0.00 0.00 3.02
3054 3475 3.496331 TCAATCCACTTCAAACCCCTTC 58.504 45.455 0.00 0.00 0.00 3.46
3055 3476 3.500343 CTCAATCCACTTCAAACCCCTT 58.500 45.455 0.00 0.00 0.00 3.95
3056 3477 2.225117 CCTCAATCCACTTCAAACCCCT 60.225 50.000 0.00 0.00 0.00 4.79
3057 3478 2.171003 CCTCAATCCACTTCAAACCCC 58.829 52.381 0.00 0.00 0.00 4.95
3058 3479 2.558359 CACCTCAATCCACTTCAAACCC 59.442 50.000 0.00 0.00 0.00 4.11
3059 3480 2.558359 CCACCTCAATCCACTTCAAACC 59.442 50.000 0.00 0.00 0.00 3.27
3060 3481 3.486383 TCCACCTCAATCCACTTCAAAC 58.514 45.455 0.00 0.00 0.00 2.93
3061 3482 3.874383 TCCACCTCAATCCACTTCAAA 57.126 42.857 0.00 0.00 0.00 2.69
3062 3483 4.387026 AATCCACCTCAATCCACTTCAA 57.613 40.909 0.00 0.00 0.00 2.69
3063 3484 5.512942 TTAATCCACCTCAATCCACTTCA 57.487 39.130 0.00 0.00 0.00 3.02
3064 3485 7.032377 GATTTAATCCACCTCAATCCACTTC 57.968 40.000 0.00 0.00 0.00 3.01
3082 3503 9.527157 TGAGATTTTGACTTGTATGGGATTTAA 57.473 29.630 0.00 0.00 0.00 1.52
3083 3504 8.956426 GTGAGATTTTGACTTGTATGGGATTTA 58.044 33.333 0.00 0.00 0.00 1.40
3084 3505 7.093771 GGTGAGATTTTGACTTGTATGGGATTT 60.094 37.037 0.00 0.00 0.00 2.17
3085 3506 6.378280 GGTGAGATTTTGACTTGTATGGGATT 59.622 38.462 0.00 0.00 0.00 3.01
3086 3507 5.888161 GGTGAGATTTTGACTTGTATGGGAT 59.112 40.000 0.00 0.00 0.00 3.85
3087 3508 5.253330 GGTGAGATTTTGACTTGTATGGGA 58.747 41.667 0.00 0.00 0.00 4.37
3088 3509 4.399303 GGGTGAGATTTTGACTTGTATGGG 59.601 45.833 0.00 0.00 0.00 4.00
3089 3510 5.009631 TGGGTGAGATTTTGACTTGTATGG 58.990 41.667 0.00 0.00 0.00 2.74
3090 3511 6.573664 TTGGGTGAGATTTTGACTTGTATG 57.426 37.500 0.00 0.00 0.00 2.39
3091 3512 6.378280 GGATTGGGTGAGATTTTGACTTGTAT 59.622 38.462 0.00 0.00 0.00 2.29
3092 3513 5.710099 GGATTGGGTGAGATTTTGACTTGTA 59.290 40.000 0.00 0.00 0.00 2.41
3093 3514 4.524328 GGATTGGGTGAGATTTTGACTTGT 59.476 41.667 0.00 0.00 0.00 3.16
3094 3515 4.082026 GGGATTGGGTGAGATTTTGACTTG 60.082 45.833 0.00 0.00 0.00 3.16
3095 3516 4.089361 GGGATTGGGTGAGATTTTGACTT 58.911 43.478 0.00 0.00 0.00 3.01
3096 3517 3.564352 GGGGATTGGGTGAGATTTTGACT 60.564 47.826 0.00 0.00 0.00 3.41
3097 3518 2.760650 GGGGATTGGGTGAGATTTTGAC 59.239 50.000 0.00 0.00 0.00 3.18
3098 3519 2.654385 AGGGGATTGGGTGAGATTTTGA 59.346 45.455 0.00 0.00 0.00 2.69
3099 3520 3.026694 GAGGGGATTGGGTGAGATTTTG 58.973 50.000 0.00 0.00 0.00 2.44
3100 3521 2.023984 GGAGGGGATTGGGTGAGATTTT 60.024 50.000 0.00 0.00 0.00 1.82
3101 3522 1.570979 GGAGGGGATTGGGTGAGATTT 59.429 52.381 0.00 0.00 0.00 2.17
3102 3523 1.226311 GGAGGGGATTGGGTGAGATT 58.774 55.000 0.00 0.00 0.00 2.40
3103 3524 0.046242 TGGAGGGGATTGGGTGAGAT 59.954 55.000 0.00 0.00 0.00 2.75
3104 3525 0.178846 TTGGAGGGGATTGGGTGAGA 60.179 55.000 0.00 0.00 0.00 3.27
3105 3526 0.704076 TTTGGAGGGGATTGGGTGAG 59.296 55.000 0.00 0.00 0.00 3.51
3106 3527 0.407918 GTTTGGAGGGGATTGGGTGA 59.592 55.000 0.00 0.00 0.00 4.02
3107 3528 0.614697 GGTTTGGAGGGGATTGGGTG 60.615 60.000 0.00 0.00 0.00 4.61
3108 3529 0.780090 AGGTTTGGAGGGGATTGGGT 60.780 55.000 0.00 0.00 0.00 4.51
3109 3530 0.033109 GAGGTTTGGAGGGGATTGGG 60.033 60.000 0.00 0.00 0.00 4.12
3110 3531 1.002857 AGAGGTTTGGAGGGGATTGG 58.997 55.000 0.00 0.00 0.00 3.16
3111 3532 2.041620 TGAAGAGGTTTGGAGGGGATTG 59.958 50.000 0.00 0.00 0.00 2.67
3112 3533 2.358258 TGAAGAGGTTTGGAGGGGATT 58.642 47.619 0.00 0.00 0.00 3.01
3113 3534 2.059756 TGAAGAGGTTTGGAGGGGAT 57.940 50.000 0.00 0.00 0.00 3.85
3114 3535 1.827792 TTGAAGAGGTTTGGAGGGGA 58.172 50.000 0.00 0.00 0.00 4.81
3115 3536 2.621668 GGATTGAAGAGGTTTGGAGGGG 60.622 54.545 0.00 0.00 0.00 4.79
3116 3537 2.621668 GGGATTGAAGAGGTTTGGAGGG 60.622 54.545 0.00 0.00 0.00 4.30
3117 3538 2.621668 GGGGATTGAAGAGGTTTGGAGG 60.622 54.545 0.00 0.00 0.00 4.30
3118 3539 2.310052 AGGGGATTGAAGAGGTTTGGAG 59.690 50.000 0.00 0.00 0.00 3.86
3119 3540 2.308866 GAGGGGATTGAAGAGGTTTGGA 59.691 50.000 0.00 0.00 0.00 3.53
3120 3541 2.621668 GGAGGGGATTGAAGAGGTTTGG 60.622 54.545 0.00 0.00 0.00 3.28
3121 3542 2.041620 TGGAGGGGATTGAAGAGGTTTG 59.958 50.000 0.00 0.00 0.00 2.93
3122 3543 2.310052 CTGGAGGGGATTGAAGAGGTTT 59.690 50.000 0.00 0.00 0.00 3.27
3123 3544 1.918957 CTGGAGGGGATTGAAGAGGTT 59.081 52.381 0.00 0.00 0.00 3.50
3124 3545 1.589414 CTGGAGGGGATTGAAGAGGT 58.411 55.000 0.00 0.00 0.00 3.85
3125 3546 0.842635 CCTGGAGGGGATTGAAGAGG 59.157 60.000 0.00 0.00 0.00 3.69
3126 3547 1.767681 CTCCTGGAGGGGATTGAAGAG 59.232 57.143 16.19 0.00 38.16 2.85
3127 3548 1.366082 TCTCCTGGAGGGGATTGAAGA 59.634 52.381 23.00 0.00 40.47 2.87
3128 3549 1.767681 CTCTCCTGGAGGGGATTGAAG 59.232 57.143 23.00 7.09 45.21 3.02
3129 3550 1.885049 CTCTCCTGGAGGGGATTGAA 58.115 55.000 23.00 0.65 45.21 2.69
3130 3551 3.642977 CTCTCCTGGAGGGGATTGA 57.357 57.895 23.00 1.70 45.21 2.57
3138 3559 1.689273 CCGGATAAACCTCTCCTGGAG 59.311 57.143 17.84 17.84 41.51 3.86
3139 3560 1.289830 TCCGGATAAACCTCTCCTGGA 59.710 52.381 0.00 0.00 34.24 3.86
3140 3561 1.413077 GTCCGGATAAACCTCTCCTGG 59.587 57.143 7.81 0.00 36.31 4.45
3141 3562 2.108168 TGTCCGGATAAACCTCTCCTG 58.892 52.381 7.81 0.00 36.31 3.86
3142 3563 2.544844 TGTCCGGATAAACCTCTCCT 57.455 50.000 7.81 0.00 36.31 3.69
3143 3564 2.158943 CCTTGTCCGGATAAACCTCTCC 60.159 54.545 15.02 0.00 36.31 3.71
3144 3565 2.742204 GCCTTGTCCGGATAAACCTCTC 60.742 54.545 15.02 0.00 36.31 3.20
3145 3566 1.209747 GCCTTGTCCGGATAAACCTCT 59.790 52.381 15.02 0.00 36.31 3.69
3146 3567 1.664873 GCCTTGTCCGGATAAACCTC 58.335 55.000 15.02 0.00 36.31 3.85
3147 3568 0.255033 GGCCTTGTCCGGATAAACCT 59.745 55.000 19.63 0.00 36.31 3.50
3148 3569 0.255033 AGGCCTTGTCCGGATAAACC 59.745 55.000 19.41 19.41 0.00 3.27
3149 3570 2.124277 AAGGCCTTGTCCGGATAAAC 57.876 50.000 19.73 9.71 0.00 2.01
3150 3571 3.371166 CCTTAAGGCCTTGTCCGGATAAA 60.371 47.826 28.77 9.73 0.00 1.40
3151 3572 2.171870 CCTTAAGGCCTTGTCCGGATAA 59.828 50.000 28.77 11.17 0.00 1.75
3152 3573 1.766496 CCTTAAGGCCTTGTCCGGATA 59.234 52.381 28.77 0.10 0.00 2.59
3153 3574 0.546598 CCTTAAGGCCTTGTCCGGAT 59.453 55.000 28.77 0.57 0.00 4.18
3154 3575 1.559065 CCCTTAAGGCCTTGTCCGGA 61.559 60.000 28.77 0.00 0.00 5.14
3155 3576 1.077716 CCCTTAAGGCCTTGTCCGG 60.078 63.158 28.77 19.97 0.00 5.14
3156 3577 0.906775 TACCCTTAAGGCCTTGTCCG 59.093 55.000 28.77 14.68 40.58 4.79
3157 3578 1.212195 CCTACCCTTAAGGCCTTGTCC 59.788 57.143 28.77 0.00 40.58 4.02
3158 3579 2.193993 TCCTACCCTTAAGGCCTTGTC 58.806 52.381 28.77 0.00 40.58 3.18
3159 3580 2.354261 TCCTACCCTTAAGGCCTTGT 57.646 50.000 28.77 18.90 40.58 3.16
3160 3581 3.953542 ATTCCTACCCTTAAGGCCTTG 57.046 47.619 28.77 13.66 40.58 3.61
3161 3582 4.967209 AAATTCCTACCCTTAAGGCCTT 57.033 40.909 24.18 24.18 40.58 4.35
3162 3583 4.967209 AAAATTCCTACCCTTAAGGCCT 57.033 40.909 16.70 0.00 40.58 5.19
3163 3584 6.097839 CCTTTAAAATTCCTACCCTTAAGGCC 59.902 42.308 16.70 0.00 40.58 5.19
3164 3585 6.893554 TCCTTTAAAATTCCTACCCTTAAGGC 59.106 38.462 16.70 0.00 40.58 4.35
3165 3586 9.488762 AATCCTTTAAAATTCCTACCCTTAAGG 57.511 33.333 15.14 15.14 43.78 2.69
3296 3717 3.399181 CTCCTGTTGCCCGGCCTA 61.399 66.667 7.03 0.00 0.00 3.93
3373 3794 9.649316 CCCAGGGGTCATTTAGTAAAAATAATA 57.351 33.333 0.00 0.00 0.00 0.98
3374 3795 7.070696 GCCCAGGGGTCATTTAGTAAAAATAAT 59.929 37.037 7.91 0.00 37.65 1.28
3375 3796 6.381707 GCCCAGGGGTCATTTAGTAAAAATAA 59.618 38.462 7.91 0.00 37.65 1.40
3376 3797 5.894964 GCCCAGGGGTCATTTAGTAAAAATA 59.105 40.000 7.91 0.00 37.65 1.40
3377 3798 4.714802 GCCCAGGGGTCATTTAGTAAAAAT 59.285 41.667 7.91 0.00 37.65 1.82
3378 3799 4.090819 GCCCAGGGGTCATTTAGTAAAAA 58.909 43.478 7.91 0.00 37.65 1.94
3379 3800 3.335484 AGCCCAGGGGTCATTTAGTAAAA 59.665 43.478 3.52 0.00 37.65 1.52
3380 3801 2.923629 AGCCCAGGGGTCATTTAGTAAA 59.076 45.455 3.52 0.00 37.65 2.01
3381 3802 2.241176 CAGCCCAGGGGTCATTTAGTAA 59.759 50.000 7.44 0.00 37.65 2.24
3382 3803 1.843851 CAGCCCAGGGGTCATTTAGTA 59.156 52.381 7.44 0.00 37.65 1.82
3383 3804 0.625849 CAGCCCAGGGGTCATTTAGT 59.374 55.000 7.44 0.00 37.65 2.24
3384 3805 0.753111 GCAGCCCAGGGGTCATTTAG 60.753 60.000 7.44 0.00 37.65 1.85
3385 3806 1.306296 GCAGCCCAGGGGTCATTTA 59.694 57.895 7.44 0.00 37.65 1.40
3386 3807 2.037847 GCAGCCCAGGGGTCATTT 59.962 61.111 7.44 0.00 37.65 2.32
3387 3808 4.066139 GGCAGCCCAGGGGTCATT 62.066 66.667 7.44 0.00 37.65 2.57
3389 3810 3.754589 TATAAGGCAGCCCAGGGGTCA 62.755 57.143 7.44 0.00 37.65 4.02
3390 3811 1.060163 TATAAGGCAGCCCAGGGGTC 61.060 60.000 7.44 2.74 37.65 4.46
3391 3812 0.403453 ATATAAGGCAGCCCAGGGGT 60.403 55.000 8.22 3.52 37.65 4.95
3392 3813 0.779997 AATATAAGGCAGCCCAGGGG 59.220 55.000 8.22 3.48 38.57 4.79
3393 3814 1.145738 ACAATATAAGGCAGCCCAGGG 59.854 52.381 8.22 0.00 0.00 4.45
3394 3815 2.664402 ACAATATAAGGCAGCCCAGG 57.336 50.000 8.22 0.00 0.00 4.45
3395 3816 2.549754 CGAACAATATAAGGCAGCCCAG 59.450 50.000 8.22 0.00 0.00 4.45
3396 3817 2.571212 CGAACAATATAAGGCAGCCCA 58.429 47.619 8.22 0.00 0.00 5.36
3397 3818 1.266989 GCGAACAATATAAGGCAGCCC 59.733 52.381 8.22 0.00 0.00 5.19
3398 3819 2.031682 CAGCGAACAATATAAGGCAGCC 60.032 50.000 1.84 1.84 0.00 4.85
3399 3820 2.872245 TCAGCGAACAATATAAGGCAGC 59.128 45.455 0.00 0.00 0.00 5.25
3400 3821 4.122776 AGTCAGCGAACAATATAAGGCAG 58.877 43.478 0.00 0.00 0.00 4.85
3401 3822 4.119862 GAGTCAGCGAACAATATAAGGCA 58.880 43.478 0.00 0.00 0.00 4.75
3402 3823 3.495001 GGAGTCAGCGAACAATATAAGGC 59.505 47.826 0.00 0.00 0.00 4.35
3403 3824 4.058817 GGGAGTCAGCGAACAATATAAGG 58.941 47.826 0.00 0.00 0.00 2.69
3404 3825 4.058817 GGGGAGTCAGCGAACAATATAAG 58.941 47.826 0.00 0.00 0.00 1.73
3405 3826 3.452990 TGGGGAGTCAGCGAACAATATAA 59.547 43.478 0.00 0.00 0.00 0.98
3406 3827 3.035363 TGGGGAGTCAGCGAACAATATA 58.965 45.455 0.00 0.00 0.00 0.86
3407 3828 1.837439 TGGGGAGTCAGCGAACAATAT 59.163 47.619 0.00 0.00 0.00 1.28
3408 3829 1.271856 TGGGGAGTCAGCGAACAATA 58.728 50.000 0.00 0.00 0.00 1.90
3409 3830 0.400213 TTGGGGAGTCAGCGAACAAT 59.600 50.000 0.00 0.00 0.00 2.71
3410 3831 0.181587 TTTGGGGAGTCAGCGAACAA 59.818 50.000 0.00 0.00 0.00 2.83
3411 3832 0.181587 TTTTGGGGAGTCAGCGAACA 59.818 50.000 0.00 0.00 0.00 3.18
3412 3833 1.001706 GTTTTTGGGGAGTCAGCGAAC 60.002 52.381 0.00 0.00 0.00 3.95
3413 3834 1.133915 AGTTTTTGGGGAGTCAGCGAA 60.134 47.619 0.00 0.00 0.00 4.70
3414 3835 0.472471 AGTTTTTGGGGAGTCAGCGA 59.528 50.000 0.00 0.00 0.00 4.93
3415 3836 1.318576 AAGTTTTTGGGGAGTCAGCG 58.681 50.000 0.00 0.00 0.00 5.18
3416 3837 5.468540 AAATAAGTTTTTGGGGAGTCAGC 57.531 39.130 0.00 0.00 0.00 4.26
3417 3838 5.240844 ACGAAATAAGTTTTTGGGGAGTCAG 59.759 40.000 0.00 0.00 0.00 3.51
3418 3839 5.134661 ACGAAATAAGTTTTTGGGGAGTCA 58.865 37.500 0.00 0.00 0.00 3.41
3419 3840 5.616204 CGACGAAATAAGTTTTTGGGGAGTC 60.616 44.000 0.00 0.00 0.00 3.36
3420 3841 4.214758 CGACGAAATAAGTTTTTGGGGAGT 59.785 41.667 0.00 0.00 0.00 3.85
3421 3842 4.719040 CGACGAAATAAGTTTTTGGGGAG 58.281 43.478 0.00 0.00 0.00 4.30
3422 3843 3.058085 GCGACGAAATAAGTTTTTGGGGA 60.058 43.478 0.00 0.00 0.00 4.81
3423 3844 3.057806 AGCGACGAAATAAGTTTTTGGGG 60.058 43.478 0.00 0.00 0.00 4.96
3424 3845 4.155310 AGCGACGAAATAAGTTTTTGGG 57.845 40.909 0.00 0.00 0.00 4.12
3425 3846 5.115021 GTCAAGCGACGAAATAAGTTTTTGG 59.885 40.000 0.00 0.00 31.07 3.28
3426 3847 5.115021 GGTCAAGCGACGAAATAAGTTTTTG 59.885 40.000 0.00 0.00 43.61 2.44
3427 3848 5.209977 GGTCAAGCGACGAAATAAGTTTTT 58.790 37.500 0.00 0.00 43.61 1.94
3428 3849 4.319984 GGGTCAAGCGACGAAATAAGTTTT 60.320 41.667 0.00 0.00 43.61 2.43
3429 3850 3.187842 GGGTCAAGCGACGAAATAAGTTT 59.812 43.478 0.00 0.00 43.61 2.66
3430 3851 2.740447 GGGTCAAGCGACGAAATAAGTT 59.260 45.455 0.00 0.00 43.61 2.66
3431 3852 2.344025 GGGTCAAGCGACGAAATAAGT 58.656 47.619 0.00 0.00 43.61 2.24
3432 3853 1.664151 GGGGTCAAGCGACGAAATAAG 59.336 52.381 0.00 0.00 43.61 1.73
3433 3854 1.676615 GGGGGTCAAGCGACGAAATAA 60.677 52.381 0.00 0.00 43.61 1.40
3434 3855 0.108041 GGGGGTCAAGCGACGAAATA 60.108 55.000 0.00 0.00 43.61 1.40
3435 3856 1.376812 GGGGGTCAAGCGACGAAAT 60.377 57.895 0.00 0.00 43.61 2.17
3436 3857 2.031465 GGGGGTCAAGCGACGAAA 59.969 61.111 0.00 0.00 43.61 3.46
3437 3858 2.119484 AATGGGGGTCAAGCGACGAA 62.119 55.000 0.00 0.00 43.61 3.85
3438 3859 2.515996 GAATGGGGGTCAAGCGACGA 62.516 60.000 0.00 0.00 43.61 4.20
3439 3860 2.046314 AATGGGGGTCAAGCGACG 60.046 61.111 0.00 0.00 43.61 5.12
3440 3861 1.002624 TGAATGGGGGTCAAGCGAC 60.003 57.895 0.00 0.00 41.80 5.19
3441 3862 1.002624 GTGAATGGGGGTCAAGCGA 60.003 57.895 0.00 0.00 0.00 4.93
3442 3863 2.398554 CGTGAATGGGGGTCAAGCG 61.399 63.158 0.00 0.00 0.00 4.68
3443 3864 2.700773 GCGTGAATGGGGGTCAAGC 61.701 63.158 0.00 0.00 41.92 4.01
3444 3865 2.046285 GGCGTGAATGGGGGTCAAG 61.046 63.158 0.00 0.00 0.00 3.02
3445 3866 2.034999 GGCGTGAATGGGGGTCAA 59.965 61.111 0.00 0.00 0.00 3.18
3446 3867 4.402528 CGGCGTGAATGGGGGTCA 62.403 66.667 0.00 0.00 0.00 4.02
3454 3875 4.690719 TTGCGGTCCGGCGTGAAT 62.691 61.111 14.38 0.00 35.06 2.57
3469 3890 2.922950 ATGCAAGTGTGGCGCCTTG 61.923 57.895 29.70 23.59 40.77 3.61
3470 3891 2.598394 ATGCAAGTGTGGCGCCTT 60.598 55.556 29.70 10.89 0.00 4.35
3471 3892 3.367743 CATGCAAGTGTGGCGCCT 61.368 61.111 29.70 3.37 0.00 5.52
3472 3893 3.615536 GACATGCAAGTGTGGCGCC 62.616 63.158 22.73 22.73 31.16 6.53
3473 3894 2.126734 GACATGCAAGTGTGGCGC 60.127 61.111 0.00 0.00 31.16 6.53
3474 3895 2.174107 CGACATGCAAGTGTGGCG 59.826 61.111 0.00 0.00 40.86 5.69
3475 3896 2.126734 GCGACATGCAAGTGTGGC 60.127 61.111 10.98 10.98 44.42 5.01
3505 3926 4.812476 TCGGTCAATGGCGCCTCG 62.812 66.667 29.70 19.73 0.00 4.63
3506 3927 3.195698 GTCGGTCAATGGCGCCTC 61.196 66.667 29.70 12.28 0.00 4.70
3509 3930 3.849953 GTCGTCGGTCAATGGCGC 61.850 66.667 0.00 0.00 0.00 6.53
3510 3931 3.541831 CGTCGTCGGTCAATGGCG 61.542 66.667 0.00 0.00 0.00 5.69
3511 3932 2.126228 TCGTCGTCGGTCAATGGC 60.126 61.111 1.55 0.00 37.69 4.40
3512 3933 1.804326 GGTCGTCGTCGGTCAATGG 60.804 63.158 1.55 0.00 37.69 3.16
3513 3934 1.081041 TGGTCGTCGTCGGTCAATG 60.081 57.895 1.55 0.00 37.69 2.82
3514 3935 1.080974 GTGGTCGTCGTCGGTCAAT 60.081 57.895 1.55 0.00 37.69 2.57
3515 3936 2.188829 AGTGGTCGTCGTCGGTCAA 61.189 57.895 1.55 0.00 37.69 3.18
3516 3937 2.592574 AGTGGTCGTCGTCGGTCA 60.593 61.111 1.55 0.00 37.69 4.02
3517 3938 2.126965 CAGTGGTCGTCGTCGGTC 60.127 66.667 1.55 0.00 37.69 4.79
3518 3939 3.667282 CCAGTGGTCGTCGTCGGT 61.667 66.667 0.00 0.00 37.69 4.69
3521 3942 3.986006 TGGCCAGTGGTCGTCGTC 61.986 66.667 9.72 0.00 0.00 4.20
3522 3943 4.295119 GTGGCCAGTGGTCGTCGT 62.295 66.667 5.11 0.00 0.00 4.34
3524 3945 3.883744 CTGGTGGCCAGTGGTCGTC 62.884 68.421 5.11 4.72 45.82 4.20
3525 3946 3.941188 CTGGTGGCCAGTGGTCGT 61.941 66.667 5.11 0.00 45.82 4.34
3536 3957 2.734723 CGTCTGTCACGCTGGTGG 60.735 66.667 0.00 0.00 42.87 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.