Multiple sequence alignment - TraesCS2B01G291900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G291900 chr2B 100.000 9618 0 0 1 9618 405760808 405751191 0.000000e+00 17762.0
1 TraesCS2B01G291900 chr2D 95.352 6089 189 36 2802 8861 339376838 339382861 0.000000e+00 9590.0
2 TraesCS2B01G291900 chr2D 96.439 2499 59 12 317 2803 339374324 339376804 0.000000e+00 4095.0
3 TraesCS2B01G291900 chr2D 91.160 181 14 2 138 318 616648341 616648519 2.680000e-60 244.0
4 TraesCS2B01G291900 chr2D 93.548 155 10 0 1 155 339374171 339374325 2.090000e-56 231.0
5 TraesCS2B01G291900 chr2D 77.688 372 65 16 9107 9468 615424086 615424449 2.720000e-50 211.0
6 TraesCS2B01G291900 chr2A 96.114 2908 80 15 5964 8861 451565001 451567885 0.000000e+00 4713.0
7 TraesCS2B01G291900 chr2A 95.876 2643 81 9 3339 5969 451556661 451559287 0.000000e+00 4252.0
8 TraesCS2B01G291900 chr2A 97.122 1390 25 8 616 1998 451553670 451555051 0.000000e+00 2331.0
9 TraesCS2B01G291900 chr2A 96.992 831 19 2 1979 2803 451555179 451556009 0.000000e+00 1391.0
10 TraesCS2B01G291900 chr2A 94.523 566 21 7 2802 3360 451556043 451556605 0.000000e+00 865.0
11 TraesCS2B01G291900 chr2A 90.323 186 16 2 142 326 365820542 365820358 9.650000e-60 243.0
12 TraesCS2B01G291900 chr2A 95.918 147 4 1 437 581 451553527 451553673 4.490000e-58 237.0
13 TraesCS2B01G291900 chr2A 94.194 155 6 2 1 155 451551334 451551485 5.810000e-57 233.0
14 TraesCS2B01G291900 chr2A 93.233 133 9 0 317 449 451551484 451551616 7.620000e-46 196.0
15 TraesCS2B01G291900 chr3A 99.244 529 4 0 9090 9618 749163383 749162855 0.000000e+00 955.0
16 TraesCS2B01G291900 chr7A 98.876 534 6 0 9085 9618 158620233 158620766 0.000000e+00 953.0
17 TraesCS2B01G291900 chr7A 93.064 173 12 0 153 325 115807688 115807516 4.460000e-63 254.0
18 TraesCS2B01G291900 chr7A 84.559 136 21 0 1327 1462 573668584 573668719 1.680000e-27 135.0
19 TraesCS2B01G291900 chr7A 86.667 105 6 5 3015 3119 504220416 504220512 1.020000e-19 110.0
20 TraesCS2B01G291900 chr5B 98.677 529 7 0 9090 9618 313064593 313064065 0.000000e+00 939.0
21 TraesCS2B01G291900 chr5B 92.000 50 4 0 9088 9137 15851424 15851375 4.820000e-08 71.3
22 TraesCS2B01G291900 chr6A 86.313 453 38 8 9090 9518 14249721 14249269 1.130000e-128 472.0
23 TraesCS2B01G291900 chr6A 93.204 103 7 0 9515 9617 14248018 14247916 1.670000e-32 152.0
24 TraesCS2B01G291900 chr3D 79.855 551 80 19 9089 9616 311970030 311969488 3.280000e-99 374.0
25 TraesCS2B01G291900 chr3D 91.189 227 9 3 8864 9089 163118485 163118701 2.030000e-76 298.0
26 TraesCS2B01G291900 chr6B 90.074 272 15 7 9090 9359 7170730 7170991 9.250000e-90 342.0
27 TraesCS2B01G291900 chr6B 90.074 272 15 7 9090 9359 7207599 7207860 9.250000e-90 342.0
28 TraesCS2B01G291900 chr6D 85.799 338 24 7 9088 9401 13011329 13010992 4.300000e-88 337.0
29 TraesCS2B01G291900 chr6D 91.739 230 15 1 9393 9618 13010841 13010612 5.610000e-82 316.0
30 TraesCS2B01G291900 chr1D 93.258 178 10 2 142 318 288702863 288702687 2.660000e-65 261.0
31 TraesCS2B01G291900 chr1D 92.941 170 12 0 152 321 178466304 178466473 2.070000e-61 248.0
32 TraesCS2B01G291900 chr1D 91.860 86 5 2 3020 3104 249030403 249030319 1.700000e-22 119.0
33 TraesCS2B01G291900 chr1D 90.805 87 7 1 3020 3105 372835839 372835753 2.190000e-21 115.0
34 TraesCS2B01G291900 chr1D 89.888 89 8 1 3017 3104 372835751 372835839 7.890000e-21 113.0
35 TraesCS2B01G291900 chr1D 89.011 91 8 2 3015 3104 484242466 484242377 2.840000e-20 111.0
36 TraesCS2B01G291900 chr5A 91.892 185 12 3 151 334 290391865 290391683 1.240000e-63 255.0
37 TraesCS2B01G291900 chr5D 92.614 176 12 1 151 326 298986106 298986280 1.600000e-62 252.0
38 TraesCS2B01G291900 chr4D 91.713 181 13 2 148 327 93338213 93338034 5.770000e-62 250.0
39 TraesCS2B01G291900 chr7D 87.317 205 22 3 115 319 50710208 50710408 2.090000e-56 231.0
40 TraesCS2B01G291900 chr7D 84.559 136 21 0 1327 1462 506133098 506133233 1.680000e-27 135.0
41 TraesCS2B01G291900 chr7D 91.011 89 7 1 3020 3107 117234489 117234577 1.700000e-22 119.0
42 TraesCS2B01G291900 chr4A 93.662 142 9 0 9477 9618 156733928 156734069 7.570000e-51 213.0
43 TraesCS2B01G291900 chr7B 84.559 136 21 0 1327 1462 534044861 534044996 1.680000e-27 135.0
44 TraesCS2B01G291900 chr7B 76.374 182 36 6 8858 9035 74338173 74337995 3.700000e-14 91.6
45 TraesCS2B01G291900 chr7B 97.436 39 1 0 598 636 526876683 526876721 6.230000e-07 67.6
46 TraesCS2B01G291900 chr1A 91.860 86 5 2 3020 3104 298603605 298603689 1.700000e-22 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G291900 chr2B 405751191 405760808 9617 True 17762.000000 17762 100.000000 1 9618 1 chr2B.!!$R1 9617
1 TraesCS2B01G291900 chr2D 339374171 339382861 8690 False 4638.666667 9590 95.113000 1 8861 3 chr2D.!!$F3 8860
2 TraesCS2B01G291900 chr2A 451565001 451567885 2884 False 4713.000000 4713 96.114000 5964 8861 1 chr2A.!!$F1 2897
3 TraesCS2B01G291900 chr2A 451551334 451559287 7953 False 1357.857143 4252 95.408286 1 5969 7 chr2A.!!$F2 5968
4 TraesCS2B01G291900 chr3A 749162855 749163383 528 True 955.000000 955 99.244000 9090 9618 1 chr3A.!!$R1 528
5 TraesCS2B01G291900 chr7A 158620233 158620766 533 False 953.000000 953 98.876000 9085 9618 1 chr7A.!!$F1 533
6 TraesCS2B01G291900 chr5B 313064065 313064593 528 True 939.000000 939 98.677000 9090 9618 1 chr5B.!!$R2 528
7 TraesCS2B01G291900 chr6A 14247916 14249721 1805 True 312.000000 472 89.758500 9090 9617 2 chr6A.!!$R1 527
8 TraesCS2B01G291900 chr3D 311969488 311970030 542 True 374.000000 374 79.855000 9089 9616 1 chr3D.!!$R1 527
9 TraesCS2B01G291900 chr6D 13010612 13011329 717 True 326.500000 337 88.769000 9088 9618 2 chr6D.!!$R1 530

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
218 219 3.900971 TGGACTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29 F
1749 3690 1.687840 TAGCACCACCACGGGCTAT 60.688 57.895 0.00 0.00 40.52 2.97 F
2984 5121 1.538047 ATGACATGTGGCACCACTTC 58.462 50.000 20.02 13.62 46.30 3.01 F
4152 6381 0.823460 TGTCGCACATCAGGCTATCA 59.177 50.000 0.00 0.00 0.00 2.15 F
5301 7531 0.770557 TGCCCTTGGTAGGTGGAACT 60.771 55.000 0.00 0.00 40.19 3.01 F
6793 9028 1.081892 ACTGCATGCGTGTTCTGATC 58.918 50.000 14.09 0.00 0.00 2.92 F
7501 9741 0.624795 GAACAGGGGAGGGAGGGAAT 60.625 60.000 0.00 0.00 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1804 3745 0.108992 GTGACACTGCCATTGCCATG 60.109 55.000 0.00 0.00 36.33 3.66 R
3234 5373 0.947244 CTGGCCGATGAAATGTAGCC 59.053 55.000 0.00 0.00 40.87 3.93 R
4785 7015 0.321122 GGCATCCCCATCGTCATCTC 60.321 60.000 0.00 0.00 0.00 2.75 R
5860 8091 0.108329 CACTAACCAGGCGTCCGAAT 60.108 55.000 0.00 0.00 0.00 3.34 R
7287 9524 1.228245 GCACCCAAGCCAGACAGAA 60.228 57.895 0.00 0.00 0.00 3.02 R
8539 10791 1.133041 TGATGTCTCCATCCCGAGGAT 60.133 52.381 0.05 0.05 45.78 3.24 R
8996 11249 0.040958 CCACTCTTGCGCACTGTTTC 60.041 55.000 11.12 0.00 0.00 2.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 119 7.148086 GGATTGAGGCATGTGTAGTTCAATTTA 60.148 37.037 0.00 0.00 35.92 1.40
165 166 9.955102 ATTTTCTAAAGTATTACTTCCTCCGTT 57.045 29.630 9.45 0.00 37.47 4.44
166 167 9.783081 TTTTCTAAAGTATTACTTCCTCCGTTT 57.217 29.630 9.45 0.00 37.47 3.60
167 168 8.992835 TTCTAAAGTATTACTTCCTCCGTTTC 57.007 34.615 9.45 0.00 37.47 2.78
168 169 8.358582 TCTAAAGTATTACTTCCTCCGTTTCT 57.641 34.615 9.45 0.00 37.47 2.52
169 170 9.466497 TCTAAAGTATTACTTCCTCCGTTTCTA 57.534 33.333 9.45 0.00 37.47 2.10
172 173 9.955102 AAAGTATTACTTCCTCCGTTTCTAAAT 57.045 29.630 9.45 0.00 37.47 1.40
178 179 9.729281 TTACTTCCTCCGTTTCTAAATATTTGT 57.271 29.630 11.05 0.00 0.00 2.83
180 181 9.901172 ACTTCCTCCGTTTCTAAATATTTGTAT 57.099 29.630 11.05 0.00 0.00 2.29
199 200 8.885494 TTTGTATTTTCAGAGGTTTCAAATGG 57.115 30.769 0.00 0.00 0.00 3.16
200 201 7.831691 TGTATTTTCAGAGGTTTCAAATGGA 57.168 32.000 0.00 0.00 0.00 3.41
201 202 7.657336 TGTATTTTCAGAGGTTTCAAATGGAC 58.343 34.615 0.00 0.00 0.00 4.02
202 203 6.983906 ATTTTCAGAGGTTTCAAATGGACT 57.016 33.333 0.00 0.00 0.00 3.85
203 204 9.010029 GTATTTTCAGAGGTTTCAAATGGACTA 57.990 33.333 0.00 0.00 0.00 2.59
204 205 6.877611 TTTCAGAGGTTTCAAATGGACTAC 57.122 37.500 0.00 0.00 0.00 2.73
205 206 4.906618 TCAGAGGTTTCAAATGGACTACC 58.093 43.478 0.00 0.00 32.88 3.18
218 219 3.900971 TGGACTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29
219 220 4.476297 TGGACTACCACATACGGATGTAT 58.524 43.478 14.23 7.46 44.82 2.29
220 221 5.633117 TGGACTACCACATACGGATGTATA 58.367 41.667 14.23 8.27 44.82 1.47
221 222 6.250711 TGGACTACCACATACGGATGTATAT 58.749 40.000 14.23 4.37 44.82 0.86
222 223 7.404481 TGGACTACCACATACGGATGTATATA 58.596 38.462 14.23 5.36 44.82 0.86
223 224 7.555195 TGGACTACCACATACGGATGTATATAG 59.445 40.741 14.23 16.35 44.82 1.31
224 225 7.772292 GGACTACCACATACGGATGTATATAGA 59.228 40.741 22.62 5.04 44.82 1.98
225 226 8.503458 ACTACCACATACGGATGTATATAGAC 57.497 38.462 22.62 0.00 44.82 2.59
226 227 8.105197 ACTACCACATACGGATGTATATAGACA 58.895 37.037 22.62 2.07 44.82 3.41
227 228 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
229 230 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
260 261 6.699204 AGTGTAGATTCACTCATATTGCTTCG 59.301 38.462 0.00 0.00 44.07 3.79
261 262 6.477033 GTGTAGATTCACTCATATTGCTTCGT 59.523 38.462 0.00 0.00 35.68 3.85
262 263 7.648112 GTGTAGATTCACTCATATTGCTTCGTA 59.352 37.037 0.00 0.00 35.68 3.43
263 264 8.360390 TGTAGATTCACTCATATTGCTTCGTAT 58.640 33.333 0.00 0.00 0.00 3.06
264 265 7.649370 AGATTCACTCATATTGCTTCGTATG 57.351 36.000 0.00 0.00 0.00 2.39
265 266 7.212976 AGATTCACTCATATTGCTTCGTATGT 58.787 34.615 0.00 0.00 31.75 2.29
266 267 8.360390 AGATTCACTCATATTGCTTCGTATGTA 58.640 33.333 0.00 0.00 31.75 2.29
267 268 7.930513 TTCACTCATATTGCTTCGTATGTAG 57.069 36.000 0.00 0.00 31.75 2.74
268 269 7.039313 TCACTCATATTGCTTCGTATGTAGT 57.961 36.000 0.00 0.00 31.75 2.73
269 270 7.139392 TCACTCATATTGCTTCGTATGTAGTC 58.861 38.462 0.00 0.00 31.75 2.59
270 271 6.918022 CACTCATATTGCTTCGTATGTAGTCA 59.082 38.462 0.00 0.00 31.75 3.41
271 272 7.596621 CACTCATATTGCTTCGTATGTAGTCAT 59.403 37.037 0.00 0.00 38.00 3.06
272 273 8.144478 ACTCATATTGCTTCGTATGTAGTCATT 58.856 33.333 0.00 0.00 35.70 2.57
273 274 8.887036 TCATATTGCTTCGTATGTAGTCATTT 57.113 30.769 0.00 0.00 35.70 2.32
274 275 8.978539 TCATATTGCTTCGTATGTAGTCATTTC 58.021 33.333 0.00 0.00 35.70 2.17
275 276 8.982685 CATATTGCTTCGTATGTAGTCATTTCT 58.017 33.333 0.00 0.00 35.70 2.52
276 277 7.849804 ATTGCTTCGTATGTAGTCATTTCTT 57.150 32.000 0.00 0.00 35.70 2.52
277 278 6.647212 TGCTTCGTATGTAGTCATTTCTTG 57.353 37.500 0.00 0.00 35.70 3.02
278 279 6.394809 TGCTTCGTATGTAGTCATTTCTTGA 58.605 36.000 0.00 0.00 35.70 3.02
279 280 6.871492 TGCTTCGTATGTAGTCATTTCTTGAA 59.129 34.615 0.00 0.00 35.70 2.69
280 281 7.386573 TGCTTCGTATGTAGTCATTTCTTGAAA 59.613 33.333 0.00 0.00 35.70 2.69
281 282 8.391106 GCTTCGTATGTAGTCATTTCTTGAAAT 58.609 33.333 3.04 3.04 35.70 2.17
312 313 9.454859 AGAAAGACAAATATTTAGGAACAGAGG 57.545 33.333 0.00 0.00 0.00 3.69
313 314 8.581253 AAAGACAAATATTTAGGAACAGAGGG 57.419 34.615 0.00 0.00 0.00 4.30
314 315 7.510675 AGACAAATATTTAGGAACAGAGGGA 57.489 36.000 0.00 0.00 0.00 4.20
315 316 7.569240 AGACAAATATTTAGGAACAGAGGGAG 58.431 38.462 0.00 0.00 0.00 4.30
345 346 7.053498 TCATTAATTCATCAAGATTGACGGGA 58.947 34.615 0.00 0.00 40.49 5.14
505 2433 5.061179 ACCTCTTTAGTTGCGTATGTTTGT 58.939 37.500 0.00 0.00 0.00 2.83
657 2588 9.298250 TGTTATTTATGCTAACCAGTTTTACCA 57.702 29.630 0.00 0.00 0.00 3.25
718 2657 6.912951 AAAAGTGTCTAGTCTAGGTAAGCA 57.087 37.500 7.05 0.00 0.00 3.91
912 2852 4.845307 GGAAGGGGAGGGGAGGGG 62.845 77.778 0.00 0.00 0.00 4.79
913 2853 4.845307 GAAGGGGAGGGGAGGGGG 62.845 77.778 0.00 0.00 0.00 5.40
1749 3690 1.687840 TAGCACCACCACGGGCTAT 60.688 57.895 0.00 0.00 40.52 2.97
1763 3704 2.674177 CGGGCTATTTCGTCAGTGACTT 60.674 50.000 20.64 6.01 0.00 3.01
1764 3705 2.673368 GGGCTATTTCGTCAGTGACTTG 59.327 50.000 20.64 6.76 0.00 3.16
1783 3724 4.568359 ACTTGCTGCAGTATAATCAAGTCG 59.432 41.667 21.97 7.25 39.66 4.18
1804 3745 3.758931 GGGATGGGCAAACACGGC 61.759 66.667 0.00 0.00 0.00 5.68
1935 3878 7.372451 ACGCTGCTCTAATTGTTTTATTGTA 57.628 32.000 0.00 0.00 0.00 2.41
2291 4385 6.316390 AGAAAATACTGCAATGTAGTAGGCAC 59.684 38.462 15.79 8.31 34.42 5.01
2608 4702 5.180492 CGGAGAAGTTGTACAGCCAAAAATA 59.820 40.000 6.04 0.00 0.00 1.40
2719 4819 6.154203 TCAACAGCTGTCCTCTAATAGATG 57.846 41.667 21.95 10.08 33.15 2.90
2853 4989 8.696410 TCCTGTTTTGTTATCTTTTTGAACAC 57.304 30.769 0.00 0.00 32.98 3.32
2861 4997 9.921637 TTGTTATCTTTTTGAACACAAAAGTCT 57.078 25.926 0.00 0.00 42.04 3.24
2922 5058 5.535783 TCTTGAACTCTTGAATCAATTGGCA 59.464 36.000 5.42 0.00 33.03 4.92
2927 5063 8.533657 TGAACTCTTGAATCAATTGGCATTATT 58.466 29.630 5.42 0.00 0.00 1.40
2984 5121 1.538047 ATGACATGTGGCACCACTTC 58.462 50.000 20.02 13.62 46.30 3.01
2987 5124 2.305635 TGACATGTGGCACCACTTCTAT 59.694 45.455 20.02 3.15 46.30 1.98
3065 5202 8.474025 TCTTGTCATGGTTTTAGTTCAATTTGT 58.526 29.630 0.00 0.00 0.00 2.83
3173 5312 4.463050 ACCCCTTTTCAGTTTGACCATA 57.537 40.909 0.00 0.00 0.00 2.74
3174 5313 4.810345 ACCCCTTTTCAGTTTGACCATAA 58.190 39.130 0.00 0.00 0.00 1.90
3267 5406 2.039216 TCGGCCAGTTACTTCATCCAAA 59.961 45.455 2.24 0.00 0.00 3.28
3435 5656 3.245984 TGGAGGTCTGGTCCATTCTTCTA 60.246 47.826 0.00 0.00 39.28 2.10
3556 5783 0.991146 TGCCCATTTACCTGAGCTGA 59.009 50.000 0.00 0.00 0.00 4.26
3792 6021 1.041437 GACCCTACTCCTGATTCCCG 58.959 60.000 0.00 0.00 0.00 5.14
3817 6046 6.603237 TGAGATGCTTTAATGTGTAATCCG 57.397 37.500 0.00 0.00 0.00 4.18
3824 6053 6.128117 TGCTTTAATGTGTAATCCGGAAACTC 60.128 38.462 9.01 11.62 0.00 3.01
4031 6260 6.430000 TGCTATGTCTGATTAGTGCTCGTATA 59.570 38.462 0.00 0.00 0.00 1.47
4046 6275 5.185828 TGCTCGTATATATGAACTGCCAGAT 59.814 40.000 0.00 0.00 0.00 2.90
4152 6381 0.823460 TGTCGCACATCAGGCTATCA 59.177 50.000 0.00 0.00 0.00 2.15
4167 6396 3.117888 GGCTATCAGAGGGAATGTGGAAA 60.118 47.826 0.00 0.00 0.00 3.13
4189 6418 7.173047 GGAAAAATGCCTGAGCTTTAATTTGAA 59.827 33.333 0.00 0.00 40.80 2.69
4326 6555 6.357367 AGAACTGAAGGTTGACTGTTATGTT 58.643 36.000 0.00 0.00 38.41 2.71
4538 6767 2.505405 CTCATGATGGGAATCAGCCTG 58.495 52.381 0.00 0.00 33.59 4.85
4663 6892 2.418197 GCATGCTGCTCAATCACCATTT 60.418 45.455 11.37 0.00 40.96 2.32
4785 7015 2.401766 GGAGGTGACATGCGCTTGG 61.402 63.158 24.99 9.82 0.00 3.61
4824 7054 1.206072 GCGTGTGCTGCTCAAAGAG 59.794 57.895 5.91 0.51 38.39 2.85
4897 7127 2.044053 CCGGGTCATGCATGGGTT 60.044 61.111 25.97 0.00 0.00 4.11
4899 7129 1.378382 CGGGTCATGCATGGGTTGA 60.378 57.895 25.97 4.70 0.00 3.18
4906 7136 0.994247 ATGCATGGGTTGAGTGGAGA 59.006 50.000 0.00 0.00 0.00 3.71
4988 7218 3.214328 GCTTTCTTCCACTCCTGTCAAA 58.786 45.455 0.00 0.00 0.00 2.69
5140 7370 6.627087 TGGTGATCTAGGAAGAAGACAATT 57.373 37.500 0.00 0.00 34.73 2.32
5166 7396 0.944386 TGGACGAGCTGCTGTTTTTC 59.056 50.000 7.01 0.00 0.00 2.29
5301 7531 0.770557 TGCCCTTGGTAGGTGGAACT 60.771 55.000 0.00 0.00 40.19 3.01
5338 7568 5.682943 TTGTACTTGTTCTACAACATGCC 57.317 39.130 0.00 0.00 42.28 4.40
5370 7600 6.258160 GGTTTTAGATCAAATCATGTGACCG 58.742 40.000 0.00 0.00 0.00 4.79
5395 7625 6.716934 TTTGTCCAACTGGCATTAAGTTTA 57.283 33.333 0.00 0.00 35.70 2.01
5424 7654 7.222872 TGGTTAGTTACTGACCCGATTTTAAA 58.777 34.615 21.15 0.00 39.07 1.52
5432 7662 5.048294 ACTGACCCGATTTTAAAAATCGCTT 60.048 36.000 18.92 11.92 45.76 4.68
5941 8173 7.041098 AGTGTCAATAAAACTAGAACTGCAAGG 60.041 37.037 0.00 0.00 39.30 3.61
6300 8535 5.764131 TCACATATTTTTGAAACGGGTGAC 58.236 37.500 0.00 0.00 0.00 3.67
6411 8646 1.886542 GCATTCTCCCTGTTTTTCCGT 59.113 47.619 0.00 0.00 0.00 4.69
6618 8853 3.195825 GTCAGTTGTGTCTACCCTGCTAT 59.804 47.826 0.00 0.00 0.00 2.97
6793 9028 1.081892 ACTGCATGCGTGTTCTGATC 58.918 50.000 14.09 0.00 0.00 2.92
6937 9173 7.949690 TGAGAATGATCTTGGATTGAATGTT 57.050 32.000 0.00 0.00 35.54 2.71
7042 9278 9.520204 CATTTATTCACCCATTGTCATTACTTC 57.480 33.333 0.00 0.00 0.00 3.01
7142 9379 5.117355 AGTTGCTGAAACACTGAATGATG 57.883 39.130 0.56 0.00 41.61 3.07
7337 9577 1.662044 GCCTCTTTGGGTTGCAGTG 59.338 57.895 0.00 0.00 36.00 3.66
7501 9741 0.624795 GAACAGGGGAGGGAGGGAAT 60.625 60.000 0.00 0.00 0.00 3.01
7519 9759 3.256631 GGAATGGATTGGATGCATACCAC 59.743 47.826 6.42 2.41 40.66 4.16
7521 9761 2.653726 TGGATTGGATGCATACCACAC 58.346 47.619 6.42 8.76 37.13 3.82
7762 10002 1.705186 ACCCCTGCTTATGACACTTGT 59.295 47.619 0.00 0.00 0.00 3.16
7764 10004 2.553028 CCCCTGCTTATGACACTTGTGT 60.553 50.000 6.06 6.06 0.00 3.72
7773 10013 8.575589 TGCTTATGACACTTGTGTGATTTTATT 58.424 29.630 11.39 0.00 46.55 1.40
7774 10014 8.853345 GCTTATGACACTTGTGTGATTTTATTG 58.147 33.333 11.39 0.00 46.55 1.90
7775 10015 9.897744 CTTATGACACTTGTGTGATTTTATTGT 57.102 29.630 11.39 0.00 46.55 2.71
7776 10016 9.891828 TTATGACACTTGTGTGATTTTATTGTC 57.108 29.630 11.39 0.00 46.55 3.18
7936 10188 2.497138 TCTCATGCCACTGTCTGTTTG 58.503 47.619 0.00 0.00 0.00 2.93
8110 10362 0.766131 TCTAACCTGGGCAAAACCGA 59.234 50.000 0.00 0.00 40.62 4.69
8211 10463 5.081728 TCCTACTACAGGTTGAAGCTAACA 58.918 41.667 0.00 0.00 45.71 2.41
8214 10466 1.897560 ACAGGTTGAAGCTAACAGGC 58.102 50.000 0.00 0.00 32.22 4.85
8229 10481 3.485463 ACAGGCTTTTGTACACAGCTA 57.515 42.857 20.54 0.00 33.76 3.32
8262 10514 3.817709 TTTTTGTTCCTGAAGGCCTTG 57.182 42.857 26.25 9.60 34.44 3.61
8305 10557 6.837992 TGCACAAAAATTTACCGACTCTATC 58.162 36.000 0.00 0.00 0.00 2.08
8328 10580 2.029560 TGCATCAGACAGACAGACAGAC 60.030 50.000 0.00 0.00 0.00 3.51
8329 10581 2.029560 GCATCAGACAGACAGACAGACA 60.030 50.000 0.00 0.00 0.00 3.41
8356 10608 9.503427 CTCTTTGGAACTAAACTAAAGTTGTTG 57.497 33.333 0.00 0.00 37.31 3.33
8539 10791 2.794350 CACAGTTGATGCGCACGATATA 59.206 45.455 14.90 0.00 0.00 0.86
8556 10808 4.537751 GATATATCCTCGGGATGGAGACA 58.462 47.826 13.77 0.00 43.06 3.41
8643 10895 5.985530 TCTGATGTACAACACAAACTCTGAG 59.014 40.000 0.00 2.45 41.55 3.35
8861 11114 1.003696 GTGAGAAGGGACCTCAAAGGG 59.996 57.143 0.00 0.00 41.72 3.95
8862 11115 1.132527 TGAGAAGGGACCTCAAAGGGA 60.133 52.381 0.00 0.00 40.58 4.20
8863 11116 1.279558 GAGAAGGGACCTCAAAGGGAC 59.720 57.143 0.00 0.00 40.58 4.46
8864 11117 0.036294 GAAGGGACCTCAAAGGGACG 60.036 60.000 0.00 0.00 40.58 4.79
8865 11118 2.046217 GGGACCTCAAAGGGACGC 60.046 66.667 0.00 0.00 40.58 5.19
8866 11119 2.747686 GGACCTCAAAGGGACGCA 59.252 61.111 0.00 0.00 40.58 5.24
8867 11120 1.376037 GGACCTCAAAGGGACGCAG 60.376 63.158 0.00 0.00 40.58 5.18
8868 11121 2.032681 ACCTCAAAGGGACGCAGC 59.967 61.111 0.00 0.00 40.58 5.25
8869 11122 3.121030 CCTCAAAGGGACGCAGCG 61.121 66.667 14.82 14.82 0.00 5.18
8870 11123 2.048222 CTCAAAGGGACGCAGCGA 60.048 61.111 24.65 0.00 0.00 4.93
8871 11124 1.448540 CTCAAAGGGACGCAGCGAT 60.449 57.895 24.65 5.58 0.00 4.58
8872 11125 1.003839 TCAAAGGGACGCAGCGATT 60.004 52.632 24.65 7.64 0.00 3.34
8873 11126 1.019278 TCAAAGGGACGCAGCGATTC 61.019 55.000 24.65 9.61 0.00 2.52
8874 11127 2.100631 AAAGGGACGCAGCGATTCG 61.101 57.895 24.65 0.62 0.00 3.34
8875 11128 4.514577 AGGGACGCAGCGATTCGG 62.515 66.667 24.65 0.00 0.00 4.30
8876 11129 4.814294 GGGACGCAGCGATTCGGT 62.814 66.667 24.65 4.68 38.40 4.69
8901 11154 2.361610 CCCAGCTGCACCCGAAAT 60.362 61.111 8.66 0.00 0.00 2.17
8902 11155 1.077787 CCCAGCTGCACCCGAAATA 60.078 57.895 8.66 0.00 0.00 1.40
8903 11156 1.097547 CCCAGCTGCACCCGAAATAG 61.098 60.000 8.66 0.00 0.00 1.73
8904 11157 1.718757 CCAGCTGCACCCGAAATAGC 61.719 60.000 8.66 0.00 34.71 2.97
8905 11158 0.745845 CAGCTGCACCCGAAATAGCT 60.746 55.000 0.00 0.00 44.90 3.32
8906 11159 0.745845 AGCTGCACCCGAAATAGCTG 60.746 55.000 1.02 0.00 42.63 4.24
8907 11160 1.718757 GCTGCACCCGAAATAGCTGG 61.719 60.000 0.00 0.00 0.00 4.85
8908 11161 1.718757 CTGCACCCGAAATAGCTGGC 61.719 60.000 0.00 0.00 0.00 4.85
8909 11162 2.823829 GCACCCGAAATAGCTGGCG 61.824 63.158 0.00 0.00 0.00 5.69
8910 11163 1.449601 CACCCGAAATAGCTGGCGT 60.450 57.895 0.00 0.00 0.00 5.68
8911 11164 1.153429 ACCCGAAATAGCTGGCGTC 60.153 57.895 0.00 0.00 0.00 5.19
8912 11165 2.237751 CCCGAAATAGCTGGCGTCG 61.238 63.158 0.00 0.00 0.00 5.12
8913 11166 2.237751 CCGAAATAGCTGGCGTCGG 61.238 63.158 13.31 13.31 44.60 4.79
8914 11167 2.871427 CGAAATAGCTGGCGTCGGC 61.871 63.158 14.38 14.38 45.35 5.54
8923 11176 4.863925 GGCGTCGGCTCAGCTCTC 62.864 72.222 12.17 0.00 39.81 3.20
8925 11178 3.805307 CGTCGGCTCAGCTCTCGT 61.805 66.667 0.00 0.00 0.00 4.18
8926 11179 2.202544 GTCGGCTCAGCTCTCGTG 60.203 66.667 0.00 0.00 0.00 4.35
8927 11180 2.359975 TCGGCTCAGCTCTCGTGA 60.360 61.111 0.00 0.00 0.00 4.35
8928 11181 1.750780 TCGGCTCAGCTCTCGTGAT 60.751 57.895 0.00 0.00 0.00 3.06
8929 11182 1.140589 CGGCTCAGCTCTCGTGATT 59.859 57.895 0.00 0.00 0.00 2.57
8930 11183 0.869454 CGGCTCAGCTCTCGTGATTC 60.869 60.000 0.00 0.00 0.00 2.52
8931 11184 0.869454 GGCTCAGCTCTCGTGATTCG 60.869 60.000 0.00 0.00 41.41 3.34
8932 11185 0.869454 GCTCAGCTCTCGTGATTCGG 60.869 60.000 0.00 0.00 40.32 4.30
8933 11186 0.735471 CTCAGCTCTCGTGATTCGGA 59.265 55.000 0.00 0.00 40.32 4.55
8934 11187 1.133216 CTCAGCTCTCGTGATTCGGAA 59.867 52.381 0.00 0.00 40.32 4.30
8935 11188 1.544246 TCAGCTCTCGTGATTCGGAAA 59.456 47.619 0.00 0.00 40.32 3.13
8936 11189 1.656095 CAGCTCTCGTGATTCGGAAAC 59.344 52.381 0.00 0.00 40.32 2.78
8937 11190 1.272490 AGCTCTCGTGATTCGGAAACA 59.728 47.619 0.00 0.00 40.32 2.83
8938 11191 2.093973 AGCTCTCGTGATTCGGAAACAT 60.094 45.455 3.95 0.00 40.32 2.71
8939 11192 2.029728 GCTCTCGTGATTCGGAAACATG 59.970 50.000 12.48 12.48 40.32 3.21
8940 11193 1.999735 TCTCGTGATTCGGAAACATGC 59.000 47.619 13.54 0.00 40.32 4.06
8941 11194 1.731709 CTCGTGATTCGGAAACATGCA 59.268 47.619 13.54 0.00 40.32 3.96
8942 11195 1.463056 TCGTGATTCGGAAACATGCAC 59.537 47.619 13.54 7.73 40.32 4.57
8943 11196 1.464608 CGTGATTCGGAAACATGCACT 59.535 47.619 7.19 0.00 35.71 4.40
8944 11197 2.725759 CGTGATTCGGAAACATGCACTG 60.726 50.000 7.19 0.00 35.71 3.66
8945 11198 1.811965 TGATTCGGAAACATGCACTGG 59.188 47.619 0.00 0.00 0.00 4.00
8946 11199 0.527565 ATTCGGAAACATGCACTGGC 59.472 50.000 0.00 0.00 41.68 4.85
8956 11209 3.093278 GCACTGGCATGTCTACGC 58.907 61.111 0.00 0.00 40.72 4.42
8957 11210 1.741401 GCACTGGCATGTCTACGCA 60.741 57.895 0.00 0.00 40.72 5.24
8958 11211 1.298157 GCACTGGCATGTCTACGCAA 61.298 55.000 0.00 0.00 40.72 4.85
8959 11212 1.155889 CACTGGCATGTCTACGCAAA 58.844 50.000 0.00 0.00 0.00 3.68
8960 11213 1.535028 CACTGGCATGTCTACGCAAAA 59.465 47.619 0.00 0.00 0.00 2.44
8961 11214 1.806542 ACTGGCATGTCTACGCAAAAG 59.193 47.619 0.00 0.00 0.00 2.27
8962 11215 0.521291 TGGCATGTCTACGCAAAAGC 59.479 50.000 0.00 0.00 0.00 3.51
8963 11216 0.521291 GGCATGTCTACGCAAAAGCA 59.479 50.000 0.00 0.00 0.00 3.91
8964 11217 1.466360 GGCATGTCTACGCAAAAGCAG 60.466 52.381 0.00 0.00 0.00 4.24
8965 11218 1.887320 CATGTCTACGCAAAAGCAGC 58.113 50.000 0.00 0.00 0.00 5.25
8972 11225 4.728058 GCAAAAGCAGCGGAAACA 57.272 50.000 0.00 0.00 0.00 2.83
8973 11226 2.509845 GCAAAAGCAGCGGAAACAG 58.490 52.632 0.00 0.00 0.00 3.16
8974 11227 0.030638 GCAAAAGCAGCGGAAACAGA 59.969 50.000 0.00 0.00 0.00 3.41
8975 11228 1.927710 GCAAAAGCAGCGGAAACAGAG 60.928 52.381 0.00 0.00 0.00 3.35
8976 11229 1.603802 CAAAAGCAGCGGAAACAGAGA 59.396 47.619 0.00 0.00 0.00 3.10
8977 11230 2.191128 AAAGCAGCGGAAACAGAGAT 57.809 45.000 0.00 0.00 0.00 2.75
8978 11231 3.334583 AAAGCAGCGGAAACAGAGATA 57.665 42.857 0.00 0.00 0.00 1.98
8979 11232 2.301577 AGCAGCGGAAACAGAGATAC 57.698 50.000 0.00 0.00 0.00 2.24
8980 11233 1.550524 AGCAGCGGAAACAGAGATACA 59.449 47.619 0.00 0.00 0.00 2.29
8981 11234 1.929836 GCAGCGGAAACAGAGATACAG 59.070 52.381 0.00 0.00 0.00 2.74
8982 11235 1.929836 CAGCGGAAACAGAGATACAGC 59.070 52.381 0.00 0.00 0.00 4.40
8983 11236 0.924090 GCGGAAACAGAGATACAGCG 59.076 55.000 0.00 0.00 0.00 5.18
8984 11237 0.924090 CGGAAACAGAGATACAGCGC 59.076 55.000 0.00 0.00 0.00 5.92
8985 11238 0.924090 GGAAACAGAGATACAGCGCG 59.076 55.000 0.00 0.00 0.00 6.86
8986 11239 0.924090 GAAACAGAGATACAGCGCGG 59.076 55.000 8.83 5.83 0.00 6.46
8987 11240 0.530744 AAACAGAGATACAGCGCGGA 59.469 50.000 16.26 0.00 0.00 5.54
8988 11241 0.747255 AACAGAGATACAGCGCGGAT 59.253 50.000 16.26 5.48 0.00 4.18
8989 11242 1.605753 ACAGAGATACAGCGCGGATA 58.394 50.000 16.26 2.24 0.00 2.59
8990 11243 1.267261 ACAGAGATACAGCGCGGATAC 59.733 52.381 16.26 4.59 0.00 2.24
9003 11256 3.132863 GGATACGGCGTGAAACAGT 57.867 52.632 24.86 0.00 35.74 3.55
9004 11257 0.719465 GGATACGGCGTGAAACAGTG 59.281 55.000 24.86 0.00 35.74 3.66
9005 11258 0.094730 GATACGGCGTGAAACAGTGC 59.905 55.000 24.86 0.00 35.74 4.40
9006 11259 1.623081 ATACGGCGTGAAACAGTGCG 61.623 55.000 24.86 0.00 35.74 5.34
9010 11263 4.194312 CGTGAAACAGTGCGCAAG 57.806 55.556 14.00 11.15 35.74 4.01
9011 11264 1.641140 CGTGAAACAGTGCGCAAGA 59.359 52.632 14.00 0.00 36.01 3.02
9012 11265 0.383491 CGTGAAACAGTGCGCAAGAG 60.383 55.000 14.00 7.67 36.01 2.85
9013 11266 0.657840 GTGAAACAGTGCGCAAGAGT 59.342 50.000 14.00 8.44 36.31 3.24
9014 11267 0.657312 TGAAACAGTGCGCAAGAGTG 59.343 50.000 14.00 10.35 43.02 3.51
9015 11268 0.040958 GAAACAGTGCGCAAGAGTGG 60.041 55.000 14.00 0.09 43.02 4.00
9016 11269 1.447317 AAACAGTGCGCAAGAGTGGG 61.447 55.000 14.00 0.00 40.59 4.61
9022 11275 4.697756 CGCAAGAGTGGGCCCGAA 62.698 66.667 19.37 0.00 43.02 4.30
9023 11276 2.282180 GCAAGAGTGGGCCCGAAA 60.282 61.111 19.37 0.00 0.00 3.46
9024 11277 2.626780 GCAAGAGTGGGCCCGAAAC 61.627 63.158 19.37 10.37 0.00 2.78
9025 11278 2.032071 AAGAGTGGGCCCGAAACG 59.968 61.111 19.37 0.00 0.00 3.60
9026 11279 2.814835 AAGAGTGGGCCCGAAACGT 61.815 57.895 19.37 3.93 0.00 3.99
9027 11280 2.726822 AAGAGTGGGCCCGAAACGTC 62.727 60.000 19.37 9.33 0.00 4.34
9028 11281 3.236003 GAGTGGGCCCGAAACGTCT 62.236 63.158 19.37 6.31 0.00 4.18
9029 11282 3.047877 GTGGGCCCGAAACGTCTG 61.048 66.667 19.37 0.00 0.00 3.51
9030 11283 4.323477 TGGGCCCGAAACGTCTGG 62.323 66.667 19.37 0.00 0.00 3.86
9034 11287 2.742372 CCCGAAACGTCTGGCTGG 60.742 66.667 0.00 0.00 0.00 4.85
9035 11288 2.742372 CCGAAACGTCTGGCTGGG 60.742 66.667 0.00 0.00 0.00 4.45
9036 11289 3.423154 CGAAACGTCTGGCTGGGC 61.423 66.667 0.00 0.00 0.00 5.36
9037 11290 3.423154 GAAACGTCTGGCTGGGCG 61.423 66.667 0.00 3.83 0.00 6.13
9038 11291 4.250305 AAACGTCTGGCTGGGCGT 62.250 61.111 5.04 5.04 39.37 5.68
9039 11292 4.681978 AACGTCTGGCTGGGCGTC 62.682 66.667 10.49 0.00 36.51 5.19
9042 11295 4.008933 GTCTGGCTGGGCGTCTGT 62.009 66.667 0.00 0.00 0.00 3.41
9043 11296 3.695606 TCTGGCTGGGCGTCTGTC 61.696 66.667 0.00 0.00 0.00 3.51
9044 11297 4.767255 CTGGCTGGGCGTCTGTCC 62.767 72.222 0.00 0.00 41.64 4.02
9054 11307 4.796231 GTCTGTCCACGCGCCGAT 62.796 66.667 5.73 0.00 0.00 4.18
9055 11308 4.063967 TCTGTCCACGCGCCGATT 62.064 61.111 5.73 0.00 0.00 3.34
9056 11309 3.118454 CTGTCCACGCGCCGATTT 61.118 61.111 5.73 0.00 0.00 2.17
9057 11310 2.666862 TGTCCACGCGCCGATTTT 60.667 55.556 5.73 0.00 0.00 1.82
9058 11311 2.097728 GTCCACGCGCCGATTTTC 59.902 61.111 5.73 0.00 0.00 2.29
9059 11312 2.357638 TCCACGCGCCGATTTTCA 60.358 55.556 5.73 0.00 0.00 2.69
9060 11313 1.743623 TCCACGCGCCGATTTTCAT 60.744 52.632 5.73 0.00 0.00 2.57
9061 11314 1.583451 CCACGCGCCGATTTTCATG 60.583 57.895 5.73 0.00 0.00 3.07
9062 11315 1.583451 CACGCGCCGATTTTCATGG 60.583 57.895 5.73 0.00 0.00 3.66
9063 11316 2.024588 CGCGCCGATTTTCATGGG 59.975 61.111 0.00 0.00 0.00 4.00
9066 11319 2.412937 GCCGATTTTCATGGGCCG 59.587 61.111 0.00 0.00 46.23 6.13
9067 11320 2.412937 CCGATTTTCATGGGCCGC 59.587 61.111 0.00 0.00 0.00 6.53
9068 11321 2.024588 CGATTTTCATGGGCCGCG 59.975 61.111 0.00 0.00 0.00 6.46
9069 11322 2.412937 GATTTTCATGGGCCGCGG 59.587 61.111 24.05 24.05 0.00 6.46
9070 11323 2.044451 ATTTTCATGGGCCGCGGA 60.044 55.556 33.48 8.89 0.00 5.54
9071 11324 2.336400 GATTTTCATGGGCCGCGGAC 62.336 60.000 33.48 30.43 0.00 4.79
9081 11334 2.663852 CCGCGGACCAGAACGTTT 60.664 61.111 24.07 0.00 0.00 3.60
9082 11335 1.373246 CCGCGGACCAGAACGTTTA 60.373 57.895 24.07 0.00 0.00 2.01
9083 11336 1.620413 CCGCGGACCAGAACGTTTAC 61.620 60.000 24.07 0.00 0.00 2.01
9084 11337 0.665369 CGCGGACCAGAACGTTTACT 60.665 55.000 0.46 0.00 0.00 2.24
9085 11338 1.505425 GCGGACCAGAACGTTTACTT 58.495 50.000 0.46 0.00 0.00 2.24
9086 11339 1.869132 GCGGACCAGAACGTTTACTTT 59.131 47.619 0.46 0.00 0.00 2.66
9128 11382 2.981350 GCCGGCCCAAACTTTCGA 60.981 61.111 18.11 0.00 0.00 3.71
9148 11402 2.663196 GGTCCACTGCTAACCGCT 59.337 61.111 0.00 0.00 40.11 5.52
9149 11403 1.003718 GGTCCACTGCTAACCGCTT 60.004 57.895 0.00 0.00 40.11 4.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 91 3.719268 ACTACACATGCCTCAATCCAA 57.281 42.857 0.00 0.00 0.00 3.53
154 155 9.901172 ATACAAATATTTAGAAACGGAGGAAGT 57.099 29.630 0.00 0.00 0.00 3.01
173 174 9.492973 CCATTTGAAACCTCTGAAAATACAAAT 57.507 29.630 0.00 0.00 36.38 2.32
174 175 8.700051 TCCATTTGAAACCTCTGAAAATACAAA 58.300 29.630 0.00 0.00 0.00 2.83
175 176 8.141268 GTCCATTTGAAACCTCTGAAAATACAA 58.859 33.333 0.00 0.00 0.00 2.41
176 177 7.505585 AGTCCATTTGAAACCTCTGAAAATACA 59.494 33.333 0.00 0.00 0.00 2.29
177 178 7.886338 AGTCCATTTGAAACCTCTGAAAATAC 58.114 34.615 0.00 0.00 0.00 1.89
178 179 9.010029 GTAGTCCATTTGAAACCTCTGAAAATA 57.990 33.333 0.00 0.00 0.00 1.40
179 180 6.983906 AGTCCATTTGAAACCTCTGAAAAT 57.016 33.333 0.00 0.00 0.00 1.82
180 181 6.264518 GGTAGTCCATTTGAAACCTCTGAAAA 59.735 38.462 0.00 0.00 31.46 2.29
181 182 5.768164 GGTAGTCCATTTGAAACCTCTGAAA 59.232 40.000 0.00 0.00 31.46 2.69
182 183 5.163141 TGGTAGTCCATTTGAAACCTCTGAA 60.163 40.000 0.00 0.00 39.03 3.02
183 184 4.349636 TGGTAGTCCATTTGAAACCTCTGA 59.650 41.667 0.00 0.00 39.03 3.27
184 185 4.455877 GTGGTAGTCCATTTGAAACCTCTG 59.544 45.833 0.00 0.00 46.20 3.35
185 186 4.104102 TGTGGTAGTCCATTTGAAACCTCT 59.896 41.667 0.00 0.00 46.20 3.69
186 187 4.394729 TGTGGTAGTCCATTTGAAACCTC 58.605 43.478 0.00 0.00 46.20 3.85
187 188 4.447138 TGTGGTAGTCCATTTGAAACCT 57.553 40.909 0.00 0.00 46.20 3.50
188 189 5.163794 CGTATGTGGTAGTCCATTTGAAACC 60.164 44.000 0.00 0.00 46.20 3.27
189 190 5.163794 CCGTATGTGGTAGTCCATTTGAAAC 60.164 44.000 0.00 0.00 46.20 2.78
190 191 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
191 192 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
192 193 3.770388 TCCGTATGTGGTAGTCCATTTGA 59.230 43.478 0.00 0.00 46.20 2.69
193 194 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
194 195 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
195 196 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
196 197 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
197 198 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
198 199 6.770746 ATATACATCCGTATGTGGTAGTCC 57.229 41.667 3.56 0.00 45.99 3.85
199 200 8.610896 GTCTATATACATCCGTATGTGGTAGTC 58.389 40.741 3.56 0.00 45.99 2.59
200 201 8.105197 TGTCTATATACATCCGTATGTGGTAGT 58.895 37.037 3.56 0.00 45.99 2.73
201 202 8.502105 TGTCTATATACATCCGTATGTGGTAG 57.498 38.462 3.56 3.93 45.99 3.18
203 204 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
236 237 6.477033 ACGAAGCAATATGAGTGAATCTACAC 59.523 38.462 0.00 0.00 40.60 2.90
237 238 6.573434 ACGAAGCAATATGAGTGAATCTACA 58.427 36.000 0.00 0.00 0.00 2.74
238 239 8.642885 CATACGAAGCAATATGAGTGAATCTAC 58.357 37.037 0.00 0.00 31.54 2.59
239 240 8.360390 ACATACGAAGCAATATGAGTGAATCTA 58.640 33.333 0.00 0.00 33.73 1.98
240 241 7.212976 ACATACGAAGCAATATGAGTGAATCT 58.787 34.615 0.00 0.00 33.73 2.40
241 242 7.413475 ACATACGAAGCAATATGAGTGAATC 57.587 36.000 0.00 0.00 33.73 2.52
242 243 8.144478 ACTACATACGAAGCAATATGAGTGAAT 58.856 33.333 0.00 0.00 33.73 2.57
243 244 7.489160 ACTACATACGAAGCAATATGAGTGAA 58.511 34.615 0.00 0.00 33.73 3.18
244 245 7.039313 ACTACATACGAAGCAATATGAGTGA 57.961 36.000 0.00 0.00 33.73 3.41
245 246 6.918022 TGACTACATACGAAGCAATATGAGTG 59.082 38.462 0.00 0.00 33.73 3.51
246 247 7.039313 TGACTACATACGAAGCAATATGAGT 57.961 36.000 0.00 0.00 33.73 3.41
247 248 8.526218 AATGACTACATACGAAGCAATATGAG 57.474 34.615 0.00 0.00 35.50 2.90
248 249 8.887036 AAATGACTACATACGAAGCAATATGA 57.113 30.769 0.00 0.00 35.50 2.15
249 250 8.982685 AGAAATGACTACATACGAAGCAATATG 58.017 33.333 0.00 0.00 35.50 1.78
250 251 9.547753 AAGAAATGACTACATACGAAGCAATAT 57.452 29.630 0.00 0.00 35.50 1.28
251 252 8.817100 CAAGAAATGACTACATACGAAGCAATA 58.183 33.333 0.00 0.00 35.50 1.90
252 253 7.549134 TCAAGAAATGACTACATACGAAGCAAT 59.451 33.333 0.00 0.00 35.50 3.56
253 254 6.871492 TCAAGAAATGACTACATACGAAGCAA 59.129 34.615 0.00 0.00 35.50 3.91
254 255 6.394809 TCAAGAAATGACTACATACGAAGCA 58.605 36.000 0.00 0.00 35.50 3.91
255 256 6.887376 TCAAGAAATGACTACATACGAAGC 57.113 37.500 0.00 0.00 35.50 3.86
286 287 9.454859 CCTCTGTTCCTAAATATTTGTCTTTCT 57.545 33.333 11.05 0.00 0.00 2.52
287 288 8.678199 CCCTCTGTTCCTAAATATTTGTCTTTC 58.322 37.037 11.05 0.00 0.00 2.62
288 289 8.390921 TCCCTCTGTTCCTAAATATTTGTCTTT 58.609 33.333 11.05 0.00 0.00 2.52
289 290 7.928873 TCCCTCTGTTCCTAAATATTTGTCTT 58.071 34.615 11.05 0.00 0.00 3.01
290 291 7.182930 ACTCCCTCTGTTCCTAAATATTTGTCT 59.817 37.037 11.05 0.00 0.00 3.41
291 292 7.339482 ACTCCCTCTGTTCCTAAATATTTGTC 58.661 38.462 11.05 0.00 0.00 3.18
292 293 7.272144 ACTCCCTCTGTTCCTAAATATTTGT 57.728 36.000 11.05 0.00 0.00 2.83
298 299 8.980832 ATGATATACTCCCTCTGTTCCTAAAT 57.019 34.615 0.00 0.00 0.00 1.40
299 300 8.798975 AATGATATACTCCCTCTGTTCCTAAA 57.201 34.615 0.00 0.00 0.00 1.85
300 301 9.892444 TTAATGATATACTCCCTCTGTTCCTAA 57.108 33.333 0.00 0.00 0.00 2.69
302 303 8.980832 ATTAATGATATACTCCCTCTGTTCCT 57.019 34.615 0.00 0.00 0.00 3.36
303 304 9.660180 GAATTAATGATATACTCCCTCTGTTCC 57.340 37.037 0.00 0.00 0.00 3.62
345 346 0.817634 TAAAGGCGTGTGTTGCTGCT 60.818 50.000 0.00 0.00 0.00 4.24
409 410 8.362639 CCTAACAGCTTAAAAGGGACGTATATA 58.637 37.037 0.00 0.00 0.00 0.86
416 418 6.181190 AGATTCCTAACAGCTTAAAAGGGAC 58.819 40.000 0.00 0.00 0.00 4.46
460 2385 4.743057 TCTCATGAGTGACCAACCATAG 57.257 45.455 21.92 0.00 0.00 2.23
505 2433 5.163468 ACACACATGCAGGAACAATAAAACA 60.163 36.000 4.84 0.00 0.00 2.83
652 2583 2.682563 GCGATTTGGTGGGAGATGGTAA 60.683 50.000 0.00 0.00 0.00 2.85
657 2588 1.271871 TGTTGCGATTTGGTGGGAGAT 60.272 47.619 0.00 0.00 0.00 2.75
700 2636 7.719871 ATCTTTTGCTTACCTAGACTAGACA 57.280 36.000 11.27 0.00 0.00 3.41
718 2657 0.623723 TCTGCGGGGGCTAATCTTTT 59.376 50.000 0.00 0.00 0.00 2.27
912 2852 3.036959 TCCTCCTCCCTCCCCTCC 61.037 72.222 0.00 0.00 0.00 4.30
913 2853 2.284151 GTCCTCCTCCCTCCCCTC 59.716 72.222 0.00 0.00 0.00 4.30
914 2854 2.540910 TGTCCTCCTCCCTCCCCT 60.541 66.667 0.00 0.00 0.00 4.79
915 2855 2.365768 GTGTCCTCCTCCCTCCCC 60.366 72.222 0.00 0.00 0.00 4.81
916 2856 2.760385 CGTGTCCTCCTCCCTCCC 60.760 72.222 0.00 0.00 0.00 4.30
917 2857 0.688087 ATTCGTGTCCTCCTCCCTCC 60.688 60.000 0.00 0.00 0.00 4.30
918 2858 2.068834 TATTCGTGTCCTCCTCCCTC 57.931 55.000 0.00 0.00 0.00 4.30
1749 3690 0.937304 GCAGCAAGTCACTGACGAAA 59.063 50.000 3.46 0.00 37.67 3.46
1763 3704 2.866156 GCGACTTGATTATACTGCAGCA 59.134 45.455 15.27 0.00 0.00 4.41
1764 3705 3.060003 CAGCGACTTGATTATACTGCAGC 60.060 47.826 15.27 0.00 0.00 5.25
1783 3724 2.283821 TGTTTGCCCATCCCCAGC 60.284 61.111 0.00 0.00 0.00 4.85
1804 3745 0.108992 GTGACACTGCCATTGCCATG 60.109 55.000 0.00 0.00 36.33 3.66
1818 3759 2.631160 AAACTCACCCGAATGTGACA 57.369 45.000 0.00 0.00 40.22 3.58
2122 4212 6.652481 TCCAGCTTAAACATCTCAAAGAGAAG 59.348 38.462 0.29 0.00 42.27 2.85
2291 4385 9.345517 CTGTCATGTTAATTACTTGATTGTTGG 57.654 33.333 0.00 0.00 41.35 3.77
2392 4486 4.451900 CACACCTACAAAGAACAGAAGGT 58.548 43.478 0.00 0.00 37.84 3.50
2393 4487 3.815401 CCACACCTACAAAGAACAGAAGG 59.185 47.826 0.00 0.00 0.00 3.46
2608 4702 6.678568 TTGGGTATCAATGGTGTTGATTTT 57.321 33.333 8.39 0.00 39.59 1.82
2719 4819 8.477984 TTTATTCATTTGCAATAAACTGGAGC 57.522 30.769 0.00 0.00 32.95 4.70
2853 4989 4.637483 TCAAGGTTGAAGCAGACTTTTG 57.363 40.909 0.00 0.00 35.82 2.44
2861 4997 3.558931 TCAGAGTTCAAGGTTGAAGCA 57.441 42.857 5.38 0.00 46.80 3.91
2920 5056 3.149981 GGACAGGCTAAGGGAATAATGC 58.850 50.000 0.00 0.00 0.00 3.56
2922 5058 3.403322 TGGGACAGGCTAAGGGAATAAT 58.597 45.455 0.00 0.00 0.00 1.28
2927 5063 2.696864 CTTGGGACAGGCTAAGGGA 58.303 57.895 0.00 0.00 42.39 4.20
2984 5121 5.700722 ACATGGCAATGTGCTGAATATAG 57.299 39.130 5.74 0.00 45.51 1.31
3065 5202 9.575868 TCCATAATTCTTGTTGTGGTTTTAGTA 57.424 29.630 2.99 0.00 40.20 1.82
3234 5373 0.947244 CTGGCCGATGAAATGTAGCC 59.053 55.000 0.00 0.00 40.87 3.93
3435 5656 9.485206 GCCAAAATCATTAAGCATTATCTTCAT 57.515 29.630 0.00 0.00 0.00 2.57
3750 5979 4.872691 CCAAGTCATCCATGTCAGTACTTC 59.127 45.833 0.00 0.00 0.00 3.01
3792 6021 6.907212 CGGATTACACATTAAAGCATCTCAAC 59.093 38.462 0.00 0.00 0.00 3.18
4046 6275 6.706270 TGTAAATTTTGATAAGGCGCCAAAAA 59.294 30.769 31.54 23.77 41.30 1.94
4152 6381 2.833943 GGCATTTTTCCACATTCCCTCT 59.166 45.455 0.00 0.00 0.00 3.69
4167 6396 8.625786 AAATTCAAATTAAAGCTCAGGCATTT 57.374 26.923 0.00 0.00 41.70 2.32
4289 6518 7.468141 ACCTTCAGTTCTAAATTTCCATTCC 57.532 36.000 0.00 0.00 0.00 3.01
4326 6555 4.461081 GTGACCAGCAAAAATGGGTGTATA 59.539 41.667 0.00 0.00 42.48 1.47
4538 6767 5.582665 AGGAGAGAAGAATCGTTTTATGCAC 59.417 40.000 0.00 0.00 0.00 4.57
4663 6892 2.203195 AAGTGAGCAGCCGCAACA 60.203 55.556 0.00 0.00 42.27 3.33
4728 6958 3.957586 CACAGTGCCCCTCCAGCA 61.958 66.667 0.00 0.00 38.08 4.41
4785 7015 0.321122 GGCATCCCCATCGTCATCTC 60.321 60.000 0.00 0.00 0.00 2.75
4808 7038 1.578423 GCCTCTTTGAGCAGCACAC 59.422 57.895 0.00 0.00 0.00 3.82
4824 7054 3.056328 GCGTCCAAACTCCAGGCC 61.056 66.667 0.00 0.00 0.00 5.19
4897 7127 1.153061 ACCAGTCCGTCTCCACTCA 59.847 57.895 0.00 0.00 0.00 3.41
4899 7129 0.759436 AACACCAGTCCGTCTCCACT 60.759 55.000 0.00 0.00 0.00 4.00
4906 7136 2.285977 GTCTCAAAAACACCAGTCCGT 58.714 47.619 0.00 0.00 0.00 4.69
4988 7218 2.370189 CCTTCCTCAACAAGACCAGAGT 59.630 50.000 0.00 0.00 0.00 3.24
5140 7370 2.425592 CAGCTCGTCCACCCAACA 59.574 61.111 0.00 0.00 0.00 3.33
5166 7396 3.393360 GGTGAGTCCCACTGGAGG 58.607 66.667 0.00 0.00 42.85 4.30
5301 7531 0.963225 TACAACTGCTGCAGGTACGA 59.037 50.000 31.00 12.33 35.51 3.43
5338 7568 7.928307 TGATTTGATCTAAAACCCTTCTCTG 57.072 36.000 0.00 0.00 0.00 3.35
5370 7600 5.391312 ACTTAATGCCAGTTGGACAAATC 57.609 39.130 1.45 0.00 37.39 2.17
5395 7625 3.579586 TCGGGTCAGTAACTAACCATGTT 59.420 43.478 0.00 0.00 34.62 2.71
5424 7654 2.039084 AGAACTCCTGGACAAGCGATTT 59.961 45.455 0.00 0.00 0.00 2.17
5432 7662 8.050930 ACTAAAACTAAAAAGAACTCCTGGACA 58.949 33.333 0.00 0.00 0.00 4.02
5558 7789 5.220854 CCACAGATATTCCAACCGAATTCAC 60.221 44.000 6.22 0.00 41.58 3.18
5813 8044 7.902920 AAATTCCCTGCATTACATATGAAGT 57.097 32.000 10.38 0.00 0.00 3.01
5853 8084 1.444836 CAGGCGTCCGAATTTACCAA 58.555 50.000 0.00 0.00 0.00 3.67
5860 8091 0.108329 CACTAACCAGGCGTCCGAAT 60.108 55.000 0.00 0.00 0.00 3.34
5941 8173 0.740737 CCAGGGAAATTGCACGATCC 59.259 55.000 0.00 2.85 0.00 3.36
6067 8299 4.786425 AGAAAGTTCTGTGCCTTCTTCTT 58.214 39.130 0.00 0.00 35.89 2.52
6068 8300 4.429854 AGAAAGTTCTGTGCCTTCTTCT 57.570 40.909 0.00 0.00 35.89 2.85
6316 8551 3.370061 GTCAAGGTTGTACCGCTATCAAC 59.630 47.826 0.00 0.00 44.90 3.18
6436 8671 8.915654 CAATTGGCCGAGAAATATAAATAAAGC 58.084 33.333 0.00 0.00 0.00 3.51
6442 8677 8.918202 ATCTACAATTGGCCGAGAAATATAAA 57.082 30.769 10.83 0.00 0.00 1.40
6618 8853 6.523840 ACTGTTCCCGTACAAAAACATACTA 58.476 36.000 4.88 0.00 31.73 1.82
6731 8966 9.607988 CACAAGTGTAAGTGGGTATTATCAATA 57.392 33.333 0.00 0.00 32.24 1.90
6909 9145 9.084164 CATTCAATCCAAGATCATTCTCAAAAC 57.916 33.333 0.00 0.00 0.00 2.43
7042 9278 4.141883 GCAAGCTGCAACATGACG 57.858 55.556 0.00 0.00 44.26 4.35
7155 9392 4.569719 ATTGGAGACATTTAGGGTTCGT 57.430 40.909 0.00 0.00 42.32 3.85
7287 9524 1.228245 GCACCCAAGCCAGACAGAA 60.228 57.895 0.00 0.00 0.00 3.02
7365 9605 5.819991 TGAGACCTCAATCCTATGCTTTTT 58.180 37.500 0.00 0.00 36.53 1.94
7501 9741 2.653726 GTGTGGTATGCATCCAATCCA 58.346 47.619 16.37 10.19 36.68 3.41
7519 9759 5.214417 TGAATTCAGAGTTGCAAATTCGTG 58.786 37.500 3.38 0.00 39.73 4.35
7521 9761 6.638063 TCTTTGAATTCAGAGTTGCAAATTCG 59.362 34.615 21.64 0.00 39.73 3.34
7762 10002 7.068103 ACCAAACAGACAGACAATAAAATCACA 59.932 33.333 0.00 0.00 0.00 3.58
7764 10004 7.581213 ACCAAACAGACAGACAATAAAATCA 57.419 32.000 0.00 0.00 0.00 2.57
7909 10161 3.054875 AGACAGTGGCATGAGAAGCATAA 60.055 43.478 0.00 0.00 34.82 1.90
7936 10188 6.581171 ATTTGAAAGGACCAGATCTGAAAC 57.419 37.500 24.62 12.60 0.00 2.78
8192 10444 3.557264 GCCTGTTAGCTTCAACCTGTAGT 60.557 47.826 0.00 0.00 0.00 2.73
8211 10463 2.039084 AGCTAGCTGTGTACAAAAGCCT 59.961 45.455 18.57 12.98 37.68 4.58
8229 10481 5.471456 CAGGAACAAAAATGAGACTACAGCT 59.529 40.000 0.00 0.00 0.00 4.24
8236 10488 4.550422 GCCTTCAGGAACAAAAATGAGAC 58.450 43.478 0.00 0.00 37.39 3.36
8262 10514 7.377766 TGTGCAAATTATTCCAGAACTAGTC 57.622 36.000 0.00 0.00 0.00 2.59
8305 10557 2.994578 CTGTCTGTCTGTCTGATGCAAG 59.005 50.000 0.00 0.00 0.00 4.01
8328 10580 8.674607 ACAACTTTAGTTTAGTTCCAAAGAGTG 58.325 33.333 0.00 0.00 35.83 3.51
8329 10581 8.803397 ACAACTTTAGTTTAGTTCCAAAGAGT 57.197 30.769 0.00 0.00 35.83 3.24
8356 10608 7.378728 GTGCAACCTCTAAACAATCTTTTACAC 59.621 37.037 0.00 0.00 0.00 2.90
8373 10625 4.539152 CACAATGCGTGCAACCTC 57.461 55.556 0.00 0.00 39.19 3.85
8539 10791 1.133041 TGATGTCTCCATCCCGAGGAT 60.133 52.381 0.05 0.05 45.78 3.24
8556 10808 2.242043 CCAGGAACTTTTGCCACTGAT 58.758 47.619 0.00 0.00 34.60 2.90
8643 10895 9.480053 TGAGAAAAGAACAATCAAATGAATTCC 57.520 29.630 2.27 0.00 0.00 3.01
8775 11027 4.394795 CGAAAAGTTTCTACAATCAGCGG 58.605 43.478 2.53 0.00 35.07 5.52
8861 11114 4.210304 GCACCGAATCGCTGCGTC 62.210 66.667 22.48 12.13 29.09 5.19
8862 11115 4.742201 AGCACCGAATCGCTGCGT 62.742 61.111 22.48 2.86 42.34 5.24
8863 11116 3.918220 GAGCACCGAATCGCTGCG 61.918 66.667 17.25 17.25 42.34 5.18
8864 11117 3.918220 CGAGCACCGAATCGCTGC 61.918 66.667 14.38 14.38 38.99 5.25
8865 11118 2.202610 TCGAGCACCGAATCGCTG 60.203 61.111 0.00 0.00 45.43 5.18
8884 11137 1.077787 TATTTCGGGTGCAGCTGGG 60.078 57.895 23.83 9.99 0.00 4.45
8885 11138 1.718757 GCTATTTCGGGTGCAGCTGG 61.719 60.000 23.83 12.46 0.00 4.85
8886 11139 0.745845 AGCTATTTCGGGTGCAGCTG 60.746 55.000 18.80 18.80 40.92 4.24
8887 11140 0.745845 CAGCTATTTCGGGTGCAGCT 60.746 55.000 16.65 0.01 43.16 4.24
8888 11141 1.718757 CCAGCTATTTCGGGTGCAGC 61.719 60.000 7.55 7.55 0.00 5.25
8889 11142 1.718757 GCCAGCTATTTCGGGTGCAG 61.719 60.000 0.00 0.00 0.00 4.41
8890 11143 1.748879 GCCAGCTATTTCGGGTGCA 60.749 57.895 0.00 0.00 0.00 4.57
8891 11144 2.823829 CGCCAGCTATTTCGGGTGC 61.824 63.158 0.00 0.00 0.00 5.01
8892 11145 1.429148 GACGCCAGCTATTTCGGGTG 61.429 60.000 0.00 0.00 37.73 4.61
8893 11146 1.153429 GACGCCAGCTATTTCGGGT 60.153 57.895 0.00 0.00 0.00 5.28
8894 11147 2.237751 CGACGCCAGCTATTTCGGG 61.238 63.158 0.00 0.00 0.00 5.14
8895 11148 2.237751 CCGACGCCAGCTATTTCGG 61.238 63.158 9.93 9.93 42.98 4.30
8896 11149 2.871427 GCCGACGCCAGCTATTTCG 61.871 63.158 0.00 0.00 0.00 3.46
8897 11150 1.491505 GAGCCGACGCCAGCTATTTC 61.492 60.000 0.00 0.00 40.11 2.17
8898 11151 1.521681 GAGCCGACGCCAGCTATTT 60.522 57.895 0.00 0.00 40.11 1.40
8899 11152 2.107141 GAGCCGACGCCAGCTATT 59.893 61.111 0.00 0.00 40.11 1.73
8900 11153 3.144120 CTGAGCCGACGCCAGCTAT 62.144 63.158 0.00 0.00 40.11 2.97
8901 11154 3.826754 CTGAGCCGACGCCAGCTA 61.827 66.667 0.00 0.00 40.11 3.32
8906 11159 4.863925 GAGAGCTGAGCCGACGCC 62.864 72.222 0.00 0.00 34.57 5.68
8908 11161 3.805307 ACGAGAGCTGAGCCGACG 61.805 66.667 8.49 10.27 0.00 5.12
8909 11162 1.999071 ATCACGAGAGCTGAGCCGAC 61.999 60.000 8.49 0.00 0.00 4.79
8910 11163 1.315981 AATCACGAGAGCTGAGCCGA 61.316 55.000 8.49 0.00 0.00 5.54
8911 11164 0.869454 GAATCACGAGAGCTGAGCCG 60.869 60.000 0.00 0.00 0.00 5.52
8912 11165 0.869454 CGAATCACGAGAGCTGAGCC 60.869 60.000 0.00 0.00 45.77 4.70
8913 11166 0.869454 CCGAATCACGAGAGCTGAGC 60.869 60.000 0.00 0.00 45.77 4.26
8914 11167 0.735471 TCCGAATCACGAGAGCTGAG 59.265 55.000 0.00 0.00 45.77 3.35
8915 11168 1.173913 TTCCGAATCACGAGAGCTGA 58.826 50.000 0.00 0.00 45.77 4.26
8916 11169 1.656095 GTTTCCGAATCACGAGAGCTG 59.344 52.381 0.00 0.00 45.77 4.24
8917 11170 1.272490 TGTTTCCGAATCACGAGAGCT 59.728 47.619 0.00 0.00 45.77 4.09
8918 11171 1.710013 TGTTTCCGAATCACGAGAGC 58.290 50.000 0.00 0.00 45.77 4.09
8919 11172 2.029728 GCATGTTTCCGAATCACGAGAG 59.970 50.000 0.00 0.00 45.77 3.20
8920 11173 1.999735 GCATGTTTCCGAATCACGAGA 59.000 47.619 0.00 0.00 45.77 4.04
8921 11174 1.731709 TGCATGTTTCCGAATCACGAG 59.268 47.619 0.00 0.00 45.77 4.18
8922 11175 1.463056 GTGCATGTTTCCGAATCACGA 59.537 47.619 0.00 0.00 45.77 4.35
8923 11176 1.464608 AGTGCATGTTTCCGAATCACG 59.535 47.619 0.00 0.00 42.18 4.35
8924 11177 2.414559 CCAGTGCATGTTTCCGAATCAC 60.415 50.000 0.00 0.00 0.00 3.06
8925 11178 1.811965 CCAGTGCATGTTTCCGAATCA 59.188 47.619 0.00 0.00 0.00 2.57
8926 11179 1.468054 GCCAGTGCATGTTTCCGAATC 60.468 52.381 0.00 0.00 37.47 2.52
8927 11180 0.527565 GCCAGTGCATGTTTCCGAAT 59.472 50.000 0.00 0.00 37.47 3.34
8928 11181 0.821301 TGCCAGTGCATGTTTCCGAA 60.821 50.000 0.00 0.00 44.23 4.30
8929 11182 1.228094 TGCCAGTGCATGTTTCCGA 60.228 52.632 0.00 0.00 44.23 4.55
8930 11183 3.353600 TGCCAGTGCATGTTTCCG 58.646 55.556 0.00 0.00 44.23 4.30
8939 11192 1.298157 TTGCGTAGACATGCCAGTGC 61.298 55.000 0.00 0.00 35.69 4.40
8940 11193 1.155889 TTTGCGTAGACATGCCAGTG 58.844 50.000 0.00 0.00 35.69 3.66
8941 11194 1.806542 CTTTTGCGTAGACATGCCAGT 59.193 47.619 0.00 0.00 35.69 4.00
8942 11195 1.466360 GCTTTTGCGTAGACATGCCAG 60.466 52.381 0.00 0.00 35.69 4.85
8943 11196 0.521291 GCTTTTGCGTAGACATGCCA 59.479 50.000 0.00 0.00 35.69 4.92
8944 11197 3.312709 GCTTTTGCGTAGACATGCC 57.687 52.632 0.00 0.00 35.69 4.40
8956 11209 1.603802 TCTCTGTTTCCGCTGCTTTTG 59.396 47.619 0.00 0.00 0.00 2.44
8957 11210 1.967319 TCTCTGTTTCCGCTGCTTTT 58.033 45.000 0.00 0.00 0.00 2.27
8958 11211 2.191128 ATCTCTGTTTCCGCTGCTTT 57.809 45.000 0.00 0.00 0.00 3.51
8959 11212 2.028112 TGTATCTCTGTTTCCGCTGCTT 60.028 45.455 0.00 0.00 0.00 3.91
8960 11213 1.550524 TGTATCTCTGTTTCCGCTGCT 59.449 47.619 0.00 0.00 0.00 4.24
8961 11214 1.929836 CTGTATCTCTGTTTCCGCTGC 59.070 52.381 0.00 0.00 0.00 5.25
8962 11215 1.929836 GCTGTATCTCTGTTTCCGCTG 59.070 52.381 0.00 0.00 0.00 5.18
8963 11216 1.469940 CGCTGTATCTCTGTTTCCGCT 60.470 52.381 0.00 0.00 0.00 5.52
8964 11217 0.924090 CGCTGTATCTCTGTTTCCGC 59.076 55.000 0.00 0.00 0.00 5.54
8965 11218 0.924090 GCGCTGTATCTCTGTTTCCG 59.076 55.000 0.00 0.00 0.00 4.30
8966 11219 0.924090 CGCGCTGTATCTCTGTTTCC 59.076 55.000 5.56 0.00 0.00 3.13
8967 11220 0.924090 CCGCGCTGTATCTCTGTTTC 59.076 55.000 5.56 0.00 0.00 2.78
8968 11221 0.530744 TCCGCGCTGTATCTCTGTTT 59.469 50.000 5.56 0.00 0.00 2.83
8969 11222 0.747255 ATCCGCGCTGTATCTCTGTT 59.253 50.000 5.56 0.00 0.00 3.16
8970 11223 1.267261 GTATCCGCGCTGTATCTCTGT 59.733 52.381 5.56 0.00 0.00 3.41
8971 11224 1.726251 CGTATCCGCGCTGTATCTCTG 60.726 57.143 5.56 0.00 0.00 3.35
8972 11225 0.517755 CGTATCCGCGCTGTATCTCT 59.482 55.000 5.56 0.00 0.00 3.10
8973 11226 0.454620 CCGTATCCGCGCTGTATCTC 60.455 60.000 5.56 0.00 0.00 2.75
8974 11227 1.579932 CCGTATCCGCGCTGTATCT 59.420 57.895 5.56 0.00 0.00 1.98
8975 11228 2.087009 GCCGTATCCGCGCTGTATC 61.087 63.158 5.56 0.00 0.00 2.24
8976 11229 2.049433 GCCGTATCCGCGCTGTAT 60.049 61.111 5.56 0.00 0.00 2.29
8977 11230 4.617486 CGCCGTATCCGCGCTGTA 62.617 66.667 5.56 0.00 0.00 2.74
8982 11235 2.881827 TTTCACGCCGTATCCGCG 60.882 61.111 0.00 0.00 38.77 6.46
8983 11236 2.020836 CTGTTTCACGCCGTATCCGC 62.021 60.000 0.00 0.00 0.00 5.54
8984 11237 0.734942 ACTGTTTCACGCCGTATCCG 60.735 55.000 0.00 0.00 0.00 4.18
8985 11238 0.719465 CACTGTTTCACGCCGTATCC 59.281 55.000 0.00 0.00 0.00 2.59
8986 11239 0.094730 GCACTGTTTCACGCCGTATC 59.905 55.000 0.00 0.00 0.00 2.24
8987 11240 1.623081 CGCACTGTTTCACGCCGTAT 61.623 55.000 0.00 0.00 0.00 3.06
8988 11241 2.304401 CGCACTGTTTCACGCCGTA 61.304 57.895 0.00 0.00 0.00 4.02
8989 11242 3.636043 CGCACTGTTTCACGCCGT 61.636 61.111 0.00 0.00 0.00 5.68
8993 11246 0.383491 CTCTTGCGCACTGTTTCACG 60.383 55.000 11.12 0.00 0.00 4.35
8994 11247 0.657840 ACTCTTGCGCACTGTTTCAC 59.342 50.000 11.12 0.00 0.00 3.18
8995 11248 0.657312 CACTCTTGCGCACTGTTTCA 59.343 50.000 11.12 0.00 0.00 2.69
8996 11249 0.040958 CCACTCTTGCGCACTGTTTC 60.041 55.000 11.12 0.00 0.00 2.78
8997 11250 1.447317 CCCACTCTTGCGCACTGTTT 61.447 55.000 11.12 0.00 0.00 2.83
8998 11251 1.893808 CCCACTCTTGCGCACTGTT 60.894 57.895 11.12 0.00 0.00 3.16
8999 11252 2.281070 CCCACTCTTGCGCACTGT 60.281 61.111 11.12 6.42 0.00 3.55
9000 11253 3.730761 GCCCACTCTTGCGCACTG 61.731 66.667 11.12 6.39 0.00 3.66
9005 11258 4.697756 TTCGGGCCCACTCTTGCG 62.698 66.667 24.92 4.81 0.00 4.85
9006 11259 2.282180 TTTCGGGCCCACTCTTGC 60.282 61.111 24.92 0.00 0.00 4.01
9007 11260 2.325082 CGTTTCGGGCCCACTCTTG 61.325 63.158 24.92 3.75 0.00 3.02
9008 11261 2.032071 CGTTTCGGGCCCACTCTT 59.968 61.111 24.92 0.00 0.00 2.85
9009 11262 3.236003 GACGTTTCGGGCCCACTCT 62.236 63.158 24.92 0.00 0.00 3.24
9010 11263 2.741211 GACGTTTCGGGCCCACTC 60.741 66.667 24.92 7.90 0.00 3.51
9011 11264 3.239253 AGACGTTTCGGGCCCACT 61.239 61.111 24.92 5.80 0.00 4.00
9012 11265 3.047877 CAGACGTTTCGGGCCCAC 61.048 66.667 24.92 12.09 0.00 4.61
9013 11266 4.323477 CCAGACGTTTCGGGCCCA 62.323 66.667 24.92 6.15 29.56 5.36
9017 11270 2.742372 CCAGCCAGACGTTTCGGG 60.742 66.667 0.00 0.00 39.96 5.14
9018 11271 2.742372 CCCAGCCAGACGTTTCGG 60.742 66.667 0.00 0.00 0.00 4.30
9019 11272 3.423154 GCCCAGCCAGACGTTTCG 61.423 66.667 0.00 0.00 0.00 3.46
9020 11273 3.423154 CGCCCAGCCAGACGTTTC 61.423 66.667 0.00 0.00 0.00 2.78
9021 11274 4.250305 ACGCCCAGCCAGACGTTT 62.250 61.111 0.00 0.00 34.62 3.60
9022 11275 4.681978 GACGCCCAGCCAGACGTT 62.682 66.667 0.00 0.00 39.16 3.99
9025 11278 3.941657 GACAGACGCCCAGCCAGAC 62.942 68.421 0.00 0.00 0.00 3.51
9026 11279 3.695606 GACAGACGCCCAGCCAGA 61.696 66.667 0.00 0.00 0.00 3.86
9027 11280 4.767255 GGACAGACGCCCAGCCAG 62.767 72.222 0.00 0.00 0.00 4.85
9037 11290 4.796231 ATCGGCGCGTGGACAGAC 62.796 66.667 8.43 0.00 0.00 3.51
9038 11291 3.583276 AAATCGGCGCGTGGACAGA 62.583 57.895 8.43 0.00 0.00 3.41
9039 11292 2.563086 GAAAATCGGCGCGTGGACAG 62.563 60.000 8.43 0.00 0.00 3.51
9040 11293 2.666862 AAAATCGGCGCGTGGACA 60.667 55.556 8.43 0.00 0.00 4.02
9041 11294 1.977594 ATGAAAATCGGCGCGTGGAC 61.978 55.000 8.43 0.00 0.00 4.02
9042 11295 1.743623 ATGAAAATCGGCGCGTGGA 60.744 52.632 8.43 5.75 0.00 4.02
9043 11296 1.583451 CATGAAAATCGGCGCGTGG 60.583 57.895 8.43 0.00 0.00 4.94
9044 11297 1.583451 CCATGAAAATCGGCGCGTG 60.583 57.895 8.43 0.00 0.00 5.34
9045 11298 2.760159 CCCATGAAAATCGGCGCGT 61.760 57.895 8.43 0.00 0.00 6.01
9046 11299 2.024588 CCCATGAAAATCGGCGCG 59.975 61.111 0.00 0.00 0.00 6.86
9047 11300 2.278792 GCCCATGAAAATCGGCGC 60.279 61.111 0.00 0.00 0.00 6.53
9048 11301 2.412937 GGCCCATGAAAATCGGCG 59.587 61.111 0.00 0.00 42.59 6.46
9049 11302 2.412937 CGGCCCATGAAAATCGGC 59.587 61.111 0.00 0.00 40.85 5.54
9050 11303 2.412937 GCGGCCCATGAAAATCGG 59.587 61.111 0.00 0.00 0.00 4.18
9051 11304 2.024588 CGCGGCCCATGAAAATCG 59.975 61.111 0.00 0.00 0.00 3.34
9052 11305 2.118404 TCCGCGGCCCATGAAAATC 61.118 57.895 23.51 0.00 0.00 2.17
9053 11306 2.044451 TCCGCGGCCCATGAAAAT 60.044 55.556 23.51 0.00 0.00 1.82
9054 11307 3.059386 GTCCGCGGCCCATGAAAA 61.059 61.111 23.51 0.00 0.00 2.29
9064 11317 1.373246 TAAACGTTCTGGTCCGCGG 60.373 57.895 22.12 22.12 0.00 6.46
9065 11318 0.665369 AGTAAACGTTCTGGTCCGCG 60.665 55.000 0.00 0.00 0.00 6.46
9066 11319 1.505425 AAGTAAACGTTCTGGTCCGC 58.495 50.000 0.00 0.00 0.00 5.54
9067 11320 4.276460 CAAAAAGTAAACGTTCTGGTCCG 58.724 43.478 0.00 0.00 0.00 4.79
9068 11321 4.498513 CCCAAAAAGTAAACGTTCTGGTCC 60.499 45.833 0.00 0.00 0.00 4.46
9069 11322 4.603985 CCCAAAAAGTAAACGTTCTGGTC 58.396 43.478 0.00 0.00 0.00 4.02
9070 11323 3.181484 GCCCAAAAAGTAAACGTTCTGGT 60.181 43.478 0.00 0.00 0.00 4.00
9071 11324 3.377439 GCCCAAAAAGTAAACGTTCTGG 58.623 45.455 0.00 0.38 0.00 3.86
9072 11325 3.040099 CGCCCAAAAAGTAAACGTTCTG 58.960 45.455 0.00 0.00 0.00 3.02
9073 11326 2.542205 GCGCCCAAAAAGTAAACGTTCT 60.542 45.455 0.00 0.00 0.00 3.01
9074 11327 1.782569 GCGCCCAAAAAGTAAACGTTC 59.217 47.619 0.00 0.00 0.00 3.95
9075 11328 1.406180 AGCGCCCAAAAAGTAAACGTT 59.594 42.857 2.29 0.00 0.00 3.99
9076 11329 1.026584 AGCGCCCAAAAAGTAAACGT 58.973 45.000 2.29 0.00 0.00 3.99
9077 11330 2.973419 TAGCGCCCAAAAAGTAAACG 57.027 45.000 2.29 0.00 0.00 3.60
9078 11331 5.287752 GCTTATTAGCGCCCAAAAAGTAAAC 59.712 40.000 2.29 0.00 37.71 2.01
9079 11332 5.404096 GCTTATTAGCGCCCAAAAAGTAAA 58.596 37.500 2.29 0.00 37.71 2.01
9080 11333 4.989044 GCTTATTAGCGCCCAAAAAGTAA 58.011 39.130 2.29 0.00 37.71 2.24
9081 11334 4.625972 GCTTATTAGCGCCCAAAAAGTA 57.374 40.909 2.29 0.00 37.71 2.24
9082 11335 3.503827 GCTTATTAGCGCCCAAAAAGT 57.496 42.857 2.29 0.00 37.71 2.66
9128 11382 3.066198 GGTTAGCAGTGGACCGGT 58.934 61.111 6.92 6.92 0.00 5.28
9148 11402 6.756542 CCGACTGTTCATGTTATGTAGATCAA 59.243 38.462 0.00 0.00 0.00 2.57
9149 11403 6.096282 TCCGACTGTTCATGTTATGTAGATCA 59.904 38.462 0.00 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.