Multiple sequence alignment - TraesCS2B01G291700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G291700 chr2B 100.000 3849 0 0 1 3849 405274825 405270977 0.000000e+00 7108.0
1 TraesCS2B01G291700 chr2B 96.703 182 5 1 2951 3131 64891593 64891774 6.250000e-78 302.0
2 TraesCS2B01G291700 chr2B 91.071 56 2 3 1729 1783 165513041 165512988 5.330000e-09 73.1
3 TraesCS2B01G291700 chr3D 94.661 1667 44 10 55 1704 153501766 153503404 0.000000e+00 2543.0
4 TraesCS2B01G291700 chr3D 93.465 1010 23 18 1894 2894 153504910 153505885 0.000000e+00 1459.0
5 TraesCS2B01G291700 chr3D 94.038 520 30 1 3331 3849 153506013 153506532 0.000000e+00 787.0
6 TraesCS2B01G291700 chr3D 97.727 132 1 1 3168 3297 153505887 153506018 3.870000e-55 226.0
7 TraesCS2B01G291700 chr3D 95.035 141 5 2 1739 1879 153503402 153503540 1.800000e-53 220.0
8 TraesCS2B01G291700 chr3D 90.769 65 3 3 1726 1789 481970969 481970907 2.460000e-12 84.2
9 TraesCS2B01G291700 chr3B 94.418 1666 49 11 55 1704 225168160 225169797 0.000000e+00 2521.0
10 TraesCS2B01G291700 chr3B 95.266 1014 32 7 1894 2894 225171234 225172244 0.000000e+00 1592.0
11 TraesCS2B01G291700 chr3B 94.326 141 6 2 1739 1879 225169795 225169933 8.380000e-52 215.0
12 TraesCS2B01G291700 chr3B 95.238 126 6 0 3724 3849 225172566 225172691 2.350000e-47 200.0
13 TraesCS2B01G291700 chr3B 92.029 138 3 3 3168 3297 225172248 225172385 1.830000e-43 187.0
14 TraesCS2B01G291700 chr3A 94.301 1667 50 10 55 1704 176159010 176157372 0.000000e+00 2510.0
15 TraesCS2B01G291700 chr3A 96.073 662 15 4 2233 2894 176150111 176149461 0.000000e+00 1068.0
16 TraesCS2B01G291700 chr3A 92.717 357 17 6 3502 3849 176149070 176148714 1.230000e-139 507.0
17 TraesCS2B01G291700 chr3A 91.785 353 18 3 1894 2237 176155956 176155606 7.480000e-132 481.0
18 TraesCS2B01G291700 chr3A 92.337 261 18 2 3331 3589 176149332 176149072 1.690000e-98 370.0
19 TraesCS2B01G291700 chr3A 95.745 141 3 3 1742 1882 176157371 176157234 1.390000e-54 224.0
20 TraesCS2B01G291700 chr3A 95.489 133 3 2 3168 3297 176149459 176149327 3.900000e-50 209.0
21 TraesCS2B01G291700 chr2D 90.758 844 39 17 679 1494 338669315 338668483 0.000000e+00 1090.0
22 TraesCS2B01G291700 chr2D 93.919 592 32 3 55 644 338669898 338669309 0.000000e+00 891.0
23 TraesCS2B01G291700 chr2D 91.652 551 31 7 1892 2433 338668160 338667616 0.000000e+00 749.0
24 TraesCS2B01G291700 chr2D 92.105 304 21 3 3546 3849 338666463 338666163 3.550000e-115 425.0
25 TraesCS2B01G291700 chr2D 87.778 270 19 5 2428 2690 338667557 338667295 1.740000e-78 303.0
26 TraesCS2B01G291700 chr2D 91.509 212 11 2 3168 3377 338667049 338666843 6.290000e-73 285.0
27 TraesCS2B01G291700 chr2D 89.691 194 7 4 2703 2894 338667235 338667053 6.430000e-58 235.0
28 TraesCS2B01G291700 chr2D 100.000 29 0 0 1728 1756 43662955 43662983 2.000000e-03 54.7
29 TraesCS2B01G291700 chr2A 93.121 596 37 3 55 648 448507995 448507402 0.000000e+00 870.0
30 TraesCS2B01G291700 chr2A 90.839 644 24 12 679 1294 448507411 448506775 0.000000e+00 830.0
31 TraesCS2B01G291700 chr2A 91.667 552 28 8 1892 2433 448501260 448500717 0.000000e+00 749.0
32 TraesCS2B01G291700 chr2A 89.803 304 20 4 3546 3849 448499548 448499256 2.810000e-101 379.0
33 TraesCS2B01G291700 chr2A 89.139 267 22 5 2428 2690 448500658 448500395 3.710000e-85 326.0
34 TraesCS2B01G291700 chr2A 92.558 215 14 1 3169 3381 448500138 448499924 1.340000e-79 307.0
35 TraesCS2B01G291700 chr2A 91.795 195 12 3 2703 2894 448500335 448500142 6.340000e-68 268.0
36 TraesCS2B01G291700 chr2A 88.350 206 14 6 1293 1494 448501655 448501456 4.970000e-59 239.0
37 TraesCS2B01G291700 chr2A 85.000 200 14 5 1554 1737 448501468 448501269 5.080000e-44 189.0
38 TraesCS2B01G291700 chr4B 98.352 182 2 1 2950 3131 666696782 666696962 6.210000e-83 318.0
39 TraesCS2B01G291700 chr4B 97.814 183 3 1 2950 3131 666660156 666660338 8.030000e-82 315.0
40 TraesCS2B01G291700 chr6B 98.870 177 1 1 2955 3131 624228692 624228867 8.030000e-82 315.0
41 TraesCS2B01G291700 chr6B 84.242 165 15 8 1732 1891 662506606 662506764 2.400000e-32 150.0
42 TraesCS2B01G291700 chr6B 92.727 55 4 0 1786 1840 198160407 198160353 3.190000e-11 80.5
43 TraesCS2B01G291700 chr6B 94.000 50 3 0 1842 1891 403189548 403189499 4.120000e-10 76.8
44 TraesCS2B01G291700 chr6B 89.831 59 5 1 2892 2950 125407026 125406969 1.480000e-09 75.0
45 TraesCS2B01G291700 chr5B 96.721 183 5 1 2951 3132 45709979 45710161 1.740000e-78 303.0
46 TraesCS2B01G291700 chr5B 97.740 177 3 1 2955 3131 532890468 532890293 1.740000e-78 303.0
47 TraesCS2B01G291700 chr5B 92.982 57 3 1 2894 2950 604156129 604156184 8.860000e-12 82.4
48 TraesCS2B01G291700 chr5B 92.727 55 4 0 1786 1840 18678579 18678525 3.190000e-11 80.5
49 TraesCS2B01G291700 chr4A 96.721 183 5 1 2953 3135 669399073 669399254 1.740000e-78 303.0
50 TraesCS2B01G291700 chr7B 93.532 201 9 2 2948 3144 48250540 48250340 2.910000e-76 296.0
51 TraesCS2B01G291700 chr7B 92.195 205 12 4 2952 3152 25669363 25669159 1.750000e-73 287.0
52 TraesCS2B01G291700 chr7B 93.220 59 3 1 1842 1899 296324278 296324336 6.850000e-13 86.1
53 TraesCS2B01G291700 chr5A 93.939 66 3 1 2893 2958 362189739 362189675 8.800000e-17 99.0
54 TraesCS2B01G291700 chr5A 92.727 55 3 1 1842 1896 688050718 688050665 1.150000e-10 78.7
55 TraesCS2B01G291700 chr5A 92.000 50 4 0 1842 1891 692844246 692844295 1.920000e-08 71.3
56 TraesCS2B01G291700 chrUn 95.000 60 2 1 2893 2952 21636674 21636732 4.090000e-15 93.5
57 TraesCS2B01G291700 chr7A 92.063 63 3 2 1838 1899 375877982 375878043 1.900000e-13 87.9
58 TraesCS2B01G291700 chr5D 92.982 57 3 1 1786 1841 109571728 109571784 8.860000e-12 82.4
59 TraesCS2B01G291700 chr7D 92.727 55 4 0 1786 1840 629032624 629032570 3.190000e-11 80.5
60 TraesCS2B01G291700 chr4D 94.340 53 2 1 2898 2950 93389033 93389084 3.190000e-11 80.5
61 TraesCS2B01G291700 chr1A 91.228 57 4 1 1784 1839 574353070 574353014 4.120000e-10 76.8
62 TraesCS2B01G291700 chr1B 89.583 48 3 1 1729 1774 668676163 668676210 4.150000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G291700 chr2B 405270977 405274825 3848 True 7108.000000 7108 100.000000 1 3849 1 chr2B.!!$R2 3848
1 TraesCS2B01G291700 chr3D 153501766 153506532 4766 False 1047.000000 2543 94.985200 55 3849 5 chr3D.!!$F1 3794
2 TraesCS2B01G291700 chr3B 225168160 225172691 4531 False 943.000000 2521 94.255400 55 3849 5 chr3B.!!$F1 3794
3 TraesCS2B01G291700 chr3A 176155606 176159010 3404 True 1071.666667 2510 93.943667 55 2237 3 chr3A.!!$R2 2182
4 TraesCS2B01G291700 chr3A 176148714 176150111 1397 True 538.500000 1068 94.154000 2233 3849 4 chr3A.!!$R1 1616
5 TraesCS2B01G291700 chr2D 338666163 338669898 3735 True 568.285714 1090 91.058857 55 3849 7 chr2D.!!$R1 3794
6 TraesCS2B01G291700 chr2A 448506775 448507995 1220 True 850.000000 870 91.980000 55 1294 2 chr2A.!!$R2 1239
7 TraesCS2B01G291700 chr2A 448499256 448501655 2399 True 351.000000 749 89.758857 1293 3849 7 chr2A.!!$R1 2556

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
32 33 0.165295 CGACGCAGACTACGTGAAGA 59.835 55.0 5.23 0.0 45.24 2.87 F
52 53 0.610232 ACTCCTTTGTGCCATCCAGC 60.610 55.0 0.00 0.0 0.00 4.85 F
1008 1029 0.848735 ATACAGGCAGCATGGTGGAT 59.151 50.0 25.24 0.0 35.86 3.41 F
2101 3668 1.411394 CGTGCTCACCTTTGCATTTG 58.589 50.0 0.00 0.0 41.45 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1798 1984 1.451504 CCCGGCCTCTGCATCATAA 59.548 57.895 0.00 0.0 40.13 1.90 R
1975 3533 3.254411 TGACAAAGTTGCACACTTGTGAA 59.746 39.130 13.64 0.0 45.77 3.18 R
2588 4227 0.036483 TGCAGTCGCATAAAGCAGGA 60.036 50.000 0.00 0.0 45.36 3.86 R
3112 4802 0.038067 ACGGCAATGCTACACGTACA 60.038 50.000 4.82 0.0 35.85 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.112709 GGAGCAACCGACGCAGAC 61.113 66.667 0.00 0.00 0.00 3.51
23 24 2.049063 GAGCAACCGACGCAGACT 60.049 61.111 0.00 0.00 0.00 3.24
24 25 1.211969 GAGCAACCGACGCAGACTA 59.788 57.895 0.00 0.00 0.00 2.59
25 26 1.071567 GAGCAACCGACGCAGACTAC 61.072 60.000 0.00 0.00 0.00 2.73
26 27 2.434134 GCAACCGACGCAGACTACG 61.434 63.158 0.00 0.00 0.00 3.51
28 29 1.081641 AACCGACGCAGACTACGTG 60.082 57.895 5.23 0.00 45.24 4.49
29 30 1.509644 AACCGACGCAGACTACGTGA 61.510 55.000 5.23 0.00 45.24 4.35
30 31 1.208358 CCGACGCAGACTACGTGAA 59.792 57.895 5.23 0.00 45.24 3.18
31 32 0.793478 CCGACGCAGACTACGTGAAG 60.793 60.000 5.23 0.00 45.24 3.02
32 33 0.165295 CGACGCAGACTACGTGAAGA 59.835 55.000 5.23 0.00 45.24 2.87
33 34 1.399343 CGACGCAGACTACGTGAAGAA 60.399 52.381 5.23 0.00 45.24 2.52
34 35 1.977412 GACGCAGACTACGTGAAGAAC 59.023 52.381 5.23 0.00 45.24 3.01
35 36 1.607628 ACGCAGACTACGTGAAGAACT 59.392 47.619 0.00 0.00 43.23 3.01
36 37 2.243407 CGCAGACTACGTGAAGAACTC 58.757 52.381 0.00 0.00 0.00 3.01
37 38 2.597520 GCAGACTACGTGAAGAACTCC 58.402 52.381 0.00 0.00 0.00 3.85
38 39 2.229302 GCAGACTACGTGAAGAACTCCT 59.771 50.000 0.00 0.00 0.00 3.69
39 40 3.305471 GCAGACTACGTGAAGAACTCCTT 60.305 47.826 0.00 0.00 37.93 3.36
40 41 4.796618 GCAGACTACGTGAAGAACTCCTTT 60.797 45.833 0.00 0.00 34.68 3.11
41 42 4.681942 CAGACTACGTGAAGAACTCCTTTG 59.318 45.833 0.00 0.00 34.68 2.77
42 43 4.341520 AGACTACGTGAAGAACTCCTTTGT 59.658 41.667 0.00 0.00 34.68 2.83
43 44 4.369182 ACTACGTGAAGAACTCCTTTGTG 58.631 43.478 0.00 0.00 34.68 3.33
44 45 1.940613 ACGTGAAGAACTCCTTTGTGC 59.059 47.619 0.00 0.00 34.68 4.57
45 46 1.264288 CGTGAAGAACTCCTTTGTGCC 59.736 52.381 0.00 0.00 34.68 5.01
46 47 2.297701 GTGAAGAACTCCTTTGTGCCA 58.702 47.619 0.00 0.00 34.68 4.92
47 48 2.887152 GTGAAGAACTCCTTTGTGCCAT 59.113 45.455 0.00 0.00 34.68 4.40
48 49 3.057946 GTGAAGAACTCCTTTGTGCCATC 60.058 47.826 0.00 0.00 34.68 3.51
49 50 2.206576 AGAACTCCTTTGTGCCATCC 57.793 50.000 0.00 0.00 0.00 3.51
50 51 1.425066 AGAACTCCTTTGTGCCATCCA 59.575 47.619 0.00 0.00 0.00 3.41
51 52 1.815003 GAACTCCTTTGTGCCATCCAG 59.185 52.381 0.00 0.00 0.00 3.86
52 53 0.610232 ACTCCTTTGTGCCATCCAGC 60.610 55.000 0.00 0.00 0.00 4.85
53 54 1.651240 CTCCTTTGTGCCATCCAGCG 61.651 60.000 0.00 0.00 34.65 5.18
60 61 2.025156 GCCATCCAGCGCGATTTG 59.975 61.111 12.10 4.25 0.00 2.32
66 67 1.019278 TCCAGCGCGATTTGAACTCC 61.019 55.000 12.10 0.00 0.00 3.85
124 125 2.681344 ACCGACTTGTTTGAGGTGTTTC 59.319 45.455 0.00 0.00 33.37 2.78
129 130 3.192633 ACTTGTTTGAGGTGTTTCGCTTT 59.807 39.130 0.00 0.00 0.00 3.51
170 171 1.542547 CCGGTGCCACAAGTAGTTTCT 60.543 52.381 0.00 0.00 0.00 2.52
176 177 5.054477 GTGCCACAAGTAGTTTCTTCTGTA 58.946 41.667 0.00 0.00 0.00 2.74
177 178 5.526111 GTGCCACAAGTAGTTTCTTCTGTAA 59.474 40.000 0.00 0.00 0.00 2.41
195 196 6.025707 CTGTAAACAGATAGCAAGCTAACG 57.974 41.667 5.81 3.38 46.59 3.18
200 201 5.207110 ACAGATAGCAAGCTAACGATGAT 57.793 39.130 5.81 0.00 31.73 2.45
361 362 4.461081 AGCAAATACGCAACCTTCCAAATA 59.539 37.500 0.00 0.00 0.00 1.40
460 463 1.912043 CCACCCTGAAGTCCAAGAGAT 59.088 52.381 0.00 0.00 0.00 2.75
599 602 1.218875 GCGGACATGTCACGTTGTGA 61.219 55.000 26.47 0.00 40.50 3.58
611 614 1.227853 GTTGTGACCCGAGCTTGGT 60.228 57.895 19.14 13.73 39.32 3.67
653 656 8.845227 TGCACGGTATGAAAATTATATCAATGT 58.155 29.630 0.00 0.00 0.00 2.71
805 818 4.996122 GCTGGATGATGAAGATGTAAGAGG 59.004 45.833 0.00 0.00 0.00 3.69
1008 1029 0.848735 ATACAGGCAGCATGGTGGAT 59.151 50.000 25.24 0.00 35.86 3.41
1130 1151 7.530426 ACTTATTTCCTGCAAAAGAAGACAT 57.470 32.000 19.81 4.32 38.92 3.06
1280 1308 7.225784 TGGTTGTGCATAATACATTTTCTGT 57.774 32.000 0.00 0.00 42.13 3.41
1352 1390 2.055100 GAAGCACAAGTCTCGTCTCAC 58.945 52.381 0.00 0.00 0.00 3.51
1491 1533 5.833340 AGTCTTAGACTCTTGATACCTGGT 58.167 41.667 9.37 4.05 38.71 4.00
1532 1574 1.757306 CCCCTCGGCTCTGCATAAT 59.243 57.895 0.00 0.00 0.00 1.28
1579 1622 9.457436 TGGTACCTGGAATAGAAATTAGTTTTC 57.543 33.333 14.36 0.00 43.45 2.29
1675 1856 6.206634 TCCATTTAGAATGCTTCAAACGAACT 59.793 34.615 0.00 0.00 0.00 3.01
1711 1892 3.555139 CGTCAGAGAGAATCAATGCTTCC 59.445 47.826 0.00 0.00 37.82 3.46
1726 1910 1.936547 GCTTCCGCTACAAAGGAGATG 59.063 52.381 0.00 0.00 37.88 2.90
1737 1923 7.955864 CGCTACAAAGGAGATGTTAAAAAGTAC 59.044 37.037 0.00 0.00 32.27 2.73
1738 1924 9.000486 GCTACAAAGGAGATGTTAAAAAGTACT 58.000 33.333 0.00 0.00 32.27 2.73
1740 1926 8.392372 ACAAAGGAGATGTTAAAAAGTACTCC 57.608 34.615 0.00 0.00 41.58 3.85
1755 1941 9.856162 AAAAAGTACTCCCTCTGTAAACAAATA 57.144 29.630 0.00 0.00 0.00 1.40
1793 1979 5.483685 TCACTAAAGTAGATGGCTGTGTT 57.516 39.130 0.00 0.00 0.00 3.32
1888 2074 9.838339 ATGTCTTACATTTATTTACAGAGGGAG 57.162 33.333 0.00 0.00 34.67 4.30
1953 3508 7.415206 GGTCATCTTTTACAACTCACAAGTGTT 60.415 37.037 0.00 0.00 35.36 3.32
1954 3509 7.640240 GTCATCTTTTACAACTCACAAGTGTTC 59.360 37.037 0.00 0.00 35.36 3.18
1955 3510 7.552687 TCATCTTTTACAACTCACAAGTGTTCT 59.447 33.333 0.00 0.00 35.36 3.01
1987 3545 3.820689 TGCGAATAATTCACAAGTGTGC 58.179 40.909 6.56 0.00 45.25 4.57
2101 3668 1.411394 CGTGCTCACCTTTGCATTTG 58.589 50.000 0.00 0.00 41.45 2.32
2532 4168 2.550180 GTCCTTGAGCTGTTTTGGACTC 59.450 50.000 0.00 0.00 40.34 3.36
2819 4509 1.858091 AGAATCGCTGGCATTCTACG 58.142 50.000 14.00 0.00 38.57 3.51
2837 4527 3.763671 CCCACTGGCTGTTTGGAC 58.236 61.111 0.00 0.00 31.39 4.02
2898 4588 9.614792 AATTTTGTAGACATGTATCTTACTCCC 57.385 33.333 0.00 0.00 0.00 4.30
2899 4589 7.973048 TTTGTAGACATGTATCTTACTCCCT 57.027 36.000 0.00 0.00 0.00 4.20
2900 4590 7.584122 TTGTAGACATGTATCTTACTCCCTC 57.416 40.000 0.00 0.00 0.00 4.30
2901 4591 6.069331 TGTAGACATGTATCTTACTCCCTCC 58.931 44.000 0.00 0.00 0.00 4.30
2902 4592 4.145807 AGACATGTATCTTACTCCCTCCG 58.854 47.826 0.00 0.00 0.00 4.63
2903 4593 3.890147 GACATGTATCTTACTCCCTCCGT 59.110 47.826 0.00 0.00 0.00 4.69
2904 4594 3.890147 ACATGTATCTTACTCCCTCCGTC 59.110 47.826 0.00 0.00 0.00 4.79
2905 4595 3.947612 TGTATCTTACTCCCTCCGTCT 57.052 47.619 0.00 0.00 0.00 4.18
2906 4596 3.818180 TGTATCTTACTCCCTCCGTCTC 58.182 50.000 0.00 0.00 0.00 3.36
2907 4597 3.201487 TGTATCTTACTCCCTCCGTCTCA 59.799 47.826 0.00 0.00 0.00 3.27
2908 4598 2.893215 TCTTACTCCCTCCGTCTCAA 57.107 50.000 0.00 0.00 0.00 3.02
2909 4599 3.165087 TCTTACTCCCTCCGTCTCAAA 57.835 47.619 0.00 0.00 0.00 2.69
2910 4600 3.503365 TCTTACTCCCTCCGTCTCAAAA 58.497 45.455 0.00 0.00 0.00 2.44
2911 4601 4.094476 TCTTACTCCCTCCGTCTCAAAAT 58.906 43.478 0.00 0.00 0.00 1.82
2912 4602 5.266788 TCTTACTCCCTCCGTCTCAAAATA 58.733 41.667 0.00 0.00 0.00 1.40
2913 4603 5.718130 TCTTACTCCCTCCGTCTCAAAATAA 59.282 40.000 0.00 0.00 0.00 1.40
2914 4604 4.473477 ACTCCCTCCGTCTCAAAATAAG 57.527 45.455 0.00 0.00 0.00 1.73
2915 4605 3.838903 ACTCCCTCCGTCTCAAAATAAGT 59.161 43.478 0.00 0.00 0.00 2.24
2916 4606 4.184629 CTCCCTCCGTCTCAAAATAAGTG 58.815 47.826 0.00 0.00 0.00 3.16
2917 4607 3.581332 TCCCTCCGTCTCAAAATAAGTGT 59.419 43.478 0.00 0.00 0.00 3.55
2918 4608 4.041198 TCCCTCCGTCTCAAAATAAGTGTT 59.959 41.667 0.00 0.00 0.00 3.32
2919 4609 4.392138 CCCTCCGTCTCAAAATAAGTGTTC 59.608 45.833 0.00 0.00 0.00 3.18
2920 4610 5.238583 CCTCCGTCTCAAAATAAGTGTTCT 58.761 41.667 0.00 0.00 0.00 3.01
2921 4611 5.348997 CCTCCGTCTCAAAATAAGTGTTCTC 59.651 44.000 0.00 0.00 0.00 2.87
2922 4612 5.849510 TCCGTCTCAAAATAAGTGTTCTCA 58.150 37.500 0.00 0.00 0.00 3.27
2923 4613 6.285224 TCCGTCTCAAAATAAGTGTTCTCAA 58.715 36.000 0.00 0.00 0.00 3.02
2924 4614 6.423905 TCCGTCTCAAAATAAGTGTTCTCAAG 59.576 38.462 0.00 0.00 0.00 3.02
2925 4615 6.202954 CCGTCTCAAAATAAGTGTTCTCAAGT 59.797 38.462 0.00 0.00 0.00 3.16
2926 4616 7.254795 CCGTCTCAAAATAAGTGTTCTCAAGTT 60.255 37.037 0.00 0.00 0.00 2.66
2927 4617 8.122952 CGTCTCAAAATAAGTGTTCTCAAGTTT 58.877 33.333 0.00 0.00 0.00 2.66
2937 4627 8.788325 AAGTGTTCTCAAGTTTAGTACAACTT 57.212 30.769 5.69 5.69 46.00 2.66
2938 4628 8.788325 AGTGTTCTCAAGTTTAGTACAACTTT 57.212 30.769 8.25 0.00 43.17 2.66
2939 4629 8.665685 AGTGTTCTCAAGTTTAGTACAACTTTG 58.334 33.333 8.25 5.77 43.17 2.77
2940 4630 8.448615 GTGTTCTCAAGTTTAGTACAACTTTGT 58.551 33.333 8.25 0.00 43.17 2.83
2941 4631 9.656040 TGTTCTCAAGTTTAGTACAACTTTGTA 57.344 29.630 8.25 0.00 43.17 2.41
2970 4660 7.921786 AGTTAGCAAAAATGCTAGACATACA 57.078 32.000 10.12 0.00 46.49 2.29
2971 4661 8.335532 AGTTAGCAAAAATGCTAGACATACAA 57.664 30.769 10.12 0.00 46.49 2.41
2972 4662 8.792633 AGTTAGCAAAAATGCTAGACATACAAA 58.207 29.630 10.12 0.00 46.49 2.83
2973 4663 9.065871 GTTAGCAAAAATGCTAGACATACAAAG 57.934 33.333 10.12 0.00 46.49 2.77
2974 4664 7.452880 AGCAAAAATGCTAGACATACAAAGA 57.547 32.000 0.67 0.00 44.28 2.52
2975 4665 7.308435 AGCAAAAATGCTAGACATACAAAGAC 58.692 34.615 0.67 0.00 44.28 3.01
2976 4666 7.175641 AGCAAAAATGCTAGACATACAAAGACT 59.824 33.333 0.67 0.00 44.28 3.24
2977 4667 7.809806 GCAAAAATGCTAGACATACAAAGACTT 59.190 33.333 0.00 0.00 38.34 3.01
2980 4670 9.502091 AAAATGCTAGACATACAAAGACTTACA 57.498 29.630 0.00 0.00 38.34 2.41
2981 4671 8.480643 AATGCTAGACATACAAAGACTTACAC 57.519 34.615 0.00 0.00 38.34 2.90
2982 4672 6.090783 TGCTAGACATACAAAGACTTACACG 58.909 40.000 0.00 0.00 0.00 4.49
2983 4673 5.004535 GCTAGACATACAAAGACTTACACGC 59.995 44.000 0.00 0.00 0.00 5.34
2984 4674 5.135508 AGACATACAAAGACTTACACGCT 57.864 39.130 0.00 0.00 0.00 5.07
2985 4675 5.539048 AGACATACAAAGACTTACACGCTT 58.461 37.500 0.00 0.00 0.00 4.68
2986 4676 5.989777 AGACATACAAAGACTTACACGCTTT 59.010 36.000 0.00 0.00 32.46 3.51
2987 4677 6.482308 AGACATACAAAGACTTACACGCTTTT 59.518 34.615 0.00 0.00 30.00 2.27
2988 4678 7.654520 AGACATACAAAGACTTACACGCTTTTA 59.345 33.333 0.00 0.00 30.00 1.52
2989 4679 7.570161 ACATACAAAGACTTACACGCTTTTAC 58.430 34.615 0.00 0.00 30.00 2.01
2990 4680 7.225145 ACATACAAAGACTTACACGCTTTTACA 59.775 33.333 0.00 0.00 30.00 2.41
2991 4681 5.803118 ACAAAGACTTACACGCTTTTACAC 58.197 37.500 0.00 0.00 30.00 2.90
2992 4682 4.703899 AAGACTTACACGCTTTTACACG 57.296 40.909 0.00 0.00 0.00 4.49
2993 4683 2.473984 AGACTTACACGCTTTTACACGC 59.526 45.455 0.00 0.00 0.00 5.34
2994 4684 2.473984 GACTTACACGCTTTTACACGCT 59.526 45.455 0.00 0.00 0.00 5.07
2995 4685 2.473984 ACTTACACGCTTTTACACGCTC 59.526 45.455 0.00 0.00 0.00 5.03
2996 4686 2.427232 TACACGCTTTTACACGCTCT 57.573 45.000 0.00 0.00 0.00 4.09
2997 4687 1.578583 ACACGCTTTTACACGCTCTT 58.421 45.000 0.00 0.00 0.00 2.85
2998 4688 1.937899 ACACGCTTTTACACGCTCTTT 59.062 42.857 0.00 0.00 0.00 2.52
2999 4689 2.033151 ACACGCTTTTACACGCTCTTTC 60.033 45.455 0.00 0.00 0.00 2.62
3000 4690 1.529865 ACGCTTTTACACGCTCTTTCC 59.470 47.619 0.00 0.00 0.00 3.13
3001 4691 1.529438 CGCTTTTACACGCTCTTTCCA 59.471 47.619 0.00 0.00 0.00 3.53
3002 4692 2.159627 CGCTTTTACACGCTCTTTCCAT 59.840 45.455 0.00 0.00 0.00 3.41
3003 4693 3.725010 CGCTTTTACACGCTCTTTCCATC 60.725 47.826 0.00 0.00 0.00 3.51
3004 4694 3.437049 GCTTTTACACGCTCTTTCCATCT 59.563 43.478 0.00 0.00 0.00 2.90
3005 4695 4.630069 GCTTTTACACGCTCTTTCCATCTA 59.370 41.667 0.00 0.00 0.00 1.98
3006 4696 5.121768 GCTTTTACACGCTCTTTCCATCTAA 59.878 40.000 0.00 0.00 0.00 2.10
3007 4697 6.476243 TTTTACACGCTCTTTCCATCTAAC 57.524 37.500 0.00 0.00 0.00 2.34
3008 4698 3.678056 ACACGCTCTTTCCATCTAACA 57.322 42.857 0.00 0.00 0.00 2.41
3009 4699 4.002906 ACACGCTCTTTCCATCTAACAA 57.997 40.909 0.00 0.00 0.00 2.83
3010 4700 3.746492 ACACGCTCTTTCCATCTAACAAC 59.254 43.478 0.00 0.00 0.00 3.32
3011 4701 3.125316 CACGCTCTTTCCATCTAACAACC 59.875 47.826 0.00 0.00 0.00 3.77
3012 4702 3.244422 ACGCTCTTTCCATCTAACAACCA 60.244 43.478 0.00 0.00 0.00 3.67
3013 4703 3.751175 CGCTCTTTCCATCTAACAACCAA 59.249 43.478 0.00 0.00 0.00 3.67
3014 4704 4.396166 CGCTCTTTCCATCTAACAACCAAT 59.604 41.667 0.00 0.00 0.00 3.16
3015 4705 5.447818 CGCTCTTTCCATCTAACAACCAATC 60.448 44.000 0.00 0.00 0.00 2.67
3016 4706 5.415701 GCTCTTTCCATCTAACAACCAATCA 59.584 40.000 0.00 0.00 0.00 2.57
3017 4707 6.623767 GCTCTTTCCATCTAACAACCAATCAC 60.624 42.308 0.00 0.00 0.00 3.06
3018 4708 6.303054 TCTTTCCATCTAACAACCAATCACA 58.697 36.000 0.00 0.00 0.00 3.58
3019 4709 6.775142 TCTTTCCATCTAACAACCAATCACAA 59.225 34.615 0.00 0.00 0.00 3.33
3020 4710 6.968263 TTCCATCTAACAACCAATCACAAA 57.032 33.333 0.00 0.00 0.00 2.83
3021 4711 6.325919 TCCATCTAACAACCAATCACAAAC 57.674 37.500 0.00 0.00 0.00 2.93
3022 4712 5.242838 TCCATCTAACAACCAATCACAAACC 59.757 40.000 0.00 0.00 0.00 3.27
3023 4713 5.243730 CCATCTAACAACCAATCACAAACCT 59.756 40.000 0.00 0.00 0.00 3.50
3024 4714 6.381801 CATCTAACAACCAATCACAAACCTC 58.618 40.000 0.00 0.00 0.00 3.85
3025 4715 5.690865 TCTAACAACCAATCACAAACCTCT 58.309 37.500 0.00 0.00 0.00 3.69
3026 4716 4.918810 AACAACCAATCACAAACCTCTC 57.081 40.909 0.00 0.00 0.00 3.20
3027 4717 3.222603 ACAACCAATCACAAACCTCTCC 58.777 45.455 0.00 0.00 0.00 3.71
3028 4718 2.558359 CAACCAATCACAAACCTCTCCC 59.442 50.000 0.00 0.00 0.00 4.30
3029 4719 1.075536 ACCAATCACAAACCTCTCCCC 59.924 52.381 0.00 0.00 0.00 4.81
3030 4720 1.616994 CCAATCACAAACCTCTCCCCC 60.617 57.143 0.00 0.00 0.00 5.40
3050 4740 3.288099 CTGATTTTCAGGGGGTGGG 57.712 57.895 0.00 0.00 40.71 4.61
3051 4741 0.972471 CTGATTTTCAGGGGGTGGGC 60.972 60.000 0.00 0.00 40.71 5.36
3052 4742 1.685765 GATTTTCAGGGGGTGGGCC 60.686 63.158 0.00 0.00 0.00 5.80
3053 4743 3.600410 ATTTTCAGGGGGTGGGCCG 62.600 63.158 0.00 0.00 34.97 6.13
3067 4757 3.866582 GCCGCCCTGCTCACCTAT 61.867 66.667 0.00 0.00 0.00 2.57
3068 4758 2.911143 CCGCCCTGCTCACCTATT 59.089 61.111 0.00 0.00 0.00 1.73
3069 4759 1.524621 CCGCCCTGCTCACCTATTG 60.525 63.158 0.00 0.00 0.00 1.90
3070 4760 1.522092 CGCCCTGCTCACCTATTGA 59.478 57.895 0.00 0.00 0.00 2.57
3071 4761 0.811616 CGCCCTGCTCACCTATTGAC 60.812 60.000 0.00 0.00 0.00 3.18
3072 4762 0.464554 GCCCTGCTCACCTATTGACC 60.465 60.000 0.00 0.00 0.00 4.02
3073 4763 0.911769 CCCTGCTCACCTATTGACCA 59.088 55.000 0.00 0.00 0.00 4.02
3074 4764 1.281867 CCCTGCTCACCTATTGACCAA 59.718 52.381 0.00 0.00 0.00 3.67
3075 4765 2.092212 CCCTGCTCACCTATTGACCAAT 60.092 50.000 0.64 0.64 34.93 3.16
3076 4766 3.209410 CCTGCTCACCTATTGACCAATC 58.791 50.000 0.00 0.00 32.50 2.67
3077 4767 3.370846 CCTGCTCACCTATTGACCAATCA 60.371 47.826 0.00 0.00 32.50 2.57
3089 4779 5.975693 TTGACCAATCAAGGTTAACCATC 57.024 39.130 26.26 10.34 43.38 3.51
3090 4780 4.340617 TGACCAATCAAGGTTAACCATCC 58.659 43.478 26.26 0.00 43.38 3.51
3091 4781 4.044065 TGACCAATCAAGGTTAACCATCCT 59.956 41.667 26.26 2.59 43.38 3.24
3092 4782 4.344104 ACCAATCAAGGTTAACCATCCTG 58.656 43.478 26.26 16.38 39.34 3.86
3093 4783 4.202673 ACCAATCAAGGTTAACCATCCTGT 60.203 41.667 26.26 11.13 39.34 4.00
3094 4784 5.014755 ACCAATCAAGGTTAACCATCCTGTA 59.985 40.000 26.26 5.02 39.34 2.74
3095 4785 5.949354 CCAATCAAGGTTAACCATCCTGTAA 59.051 40.000 26.26 3.53 38.89 2.41
3096 4786 6.435904 CCAATCAAGGTTAACCATCCTGTAAA 59.564 38.462 26.26 3.51 38.89 2.01
3097 4787 7.039363 CCAATCAAGGTTAACCATCCTGTAAAA 60.039 37.037 26.26 3.19 38.89 1.52
3098 4788 7.703058 ATCAAGGTTAACCATCCTGTAAAAG 57.297 36.000 26.26 0.00 38.89 2.27
3099 4789 5.475564 TCAAGGTTAACCATCCTGTAAAAGC 59.524 40.000 26.26 0.00 38.89 3.51
3100 4790 4.341487 AGGTTAACCATCCTGTAAAAGCC 58.659 43.478 26.26 0.00 38.89 4.35
3101 4791 4.044191 AGGTTAACCATCCTGTAAAAGCCT 59.956 41.667 26.26 0.00 38.89 4.58
3102 4792 4.157840 GGTTAACCATCCTGTAAAAGCCTG 59.842 45.833 20.12 0.00 35.64 4.85
3103 4793 3.525800 AACCATCCTGTAAAAGCCTGT 57.474 42.857 0.00 0.00 0.00 4.00
3104 4794 4.650972 AACCATCCTGTAAAAGCCTGTA 57.349 40.909 0.00 0.00 0.00 2.74
3105 4795 4.650972 ACCATCCTGTAAAAGCCTGTAA 57.349 40.909 0.00 0.00 0.00 2.41
3106 4796 4.993028 ACCATCCTGTAAAAGCCTGTAAA 58.007 39.130 0.00 0.00 0.00 2.01
3107 4797 5.580022 ACCATCCTGTAAAAGCCTGTAAAT 58.420 37.500 0.00 0.00 0.00 1.40
3108 4798 5.652452 ACCATCCTGTAAAAGCCTGTAAATC 59.348 40.000 0.00 0.00 0.00 2.17
3109 4799 5.220854 CCATCCTGTAAAAGCCTGTAAATCG 60.221 44.000 0.00 0.00 0.00 3.34
3110 4800 4.901868 TCCTGTAAAAGCCTGTAAATCGT 58.098 39.130 0.00 0.00 0.00 3.73
3111 4801 5.310451 TCCTGTAAAAGCCTGTAAATCGTT 58.690 37.500 0.00 0.00 0.00 3.85
3112 4802 5.766174 TCCTGTAAAAGCCTGTAAATCGTTT 59.234 36.000 0.00 0.00 0.00 3.60
3113 4803 5.856455 CCTGTAAAAGCCTGTAAATCGTTTG 59.144 40.000 0.00 0.00 0.00 2.93
3114 4804 6.380095 TGTAAAAGCCTGTAAATCGTTTGT 57.620 33.333 0.00 0.00 0.00 2.83
3115 4805 7.308109 CCTGTAAAAGCCTGTAAATCGTTTGTA 60.308 37.037 0.00 0.00 0.00 2.41
3116 4806 7.354257 TGTAAAAGCCTGTAAATCGTTTGTAC 58.646 34.615 0.00 0.00 0.00 2.90
3128 4818 2.492001 CGTTTGTACGTGTAGCATTGC 58.508 47.619 0.00 0.00 42.72 3.56
3129 4819 2.723618 CGTTTGTACGTGTAGCATTGCC 60.724 50.000 4.70 0.00 42.72 4.52
3130 4820 1.072391 TTGTACGTGTAGCATTGCCG 58.928 50.000 4.70 4.23 0.00 5.69
3131 4821 0.038067 TGTACGTGTAGCATTGCCGT 60.038 50.000 13.66 13.66 35.68 5.68
3132 4822 1.201880 TGTACGTGTAGCATTGCCGTA 59.798 47.619 11.99 11.99 33.32 4.02
3133 4823 2.261345 GTACGTGTAGCATTGCCGTAA 58.739 47.619 15.97 2.87 35.98 3.18
3134 4824 1.798283 ACGTGTAGCATTGCCGTAAA 58.202 45.000 4.70 0.00 0.00 2.01
3135 4825 1.730064 ACGTGTAGCATTGCCGTAAAG 59.270 47.619 4.70 0.00 0.00 1.85
3136 4826 1.730064 CGTGTAGCATTGCCGTAAAGT 59.270 47.619 4.70 0.00 0.00 2.66
3137 4827 2.158841 CGTGTAGCATTGCCGTAAAGTT 59.841 45.455 4.70 0.00 0.00 2.66
3138 4828 3.368539 CGTGTAGCATTGCCGTAAAGTTA 59.631 43.478 4.70 0.00 0.00 2.24
3139 4829 4.491924 CGTGTAGCATTGCCGTAAAGTTAG 60.492 45.833 4.70 0.00 0.00 2.34
3140 4830 4.390909 GTGTAGCATTGCCGTAAAGTTAGT 59.609 41.667 4.70 0.00 0.00 2.24
3141 4831 5.577945 GTGTAGCATTGCCGTAAAGTTAGTA 59.422 40.000 4.70 0.00 0.00 1.82
3142 4832 5.577945 TGTAGCATTGCCGTAAAGTTAGTAC 59.422 40.000 4.70 0.00 0.00 2.73
3143 4833 3.937079 AGCATTGCCGTAAAGTTAGTACC 59.063 43.478 4.70 0.00 0.00 3.34
3144 4834 3.937079 GCATTGCCGTAAAGTTAGTACCT 59.063 43.478 0.00 0.00 0.00 3.08
3145 4835 4.201783 GCATTGCCGTAAAGTTAGTACCTG 60.202 45.833 0.00 0.00 0.00 4.00
3146 4836 4.605640 TTGCCGTAAAGTTAGTACCTGT 57.394 40.909 0.00 0.00 0.00 4.00
3147 4837 5.720371 TTGCCGTAAAGTTAGTACCTGTA 57.280 39.130 0.00 0.00 0.00 2.74
3148 4838 5.059404 TGCCGTAAAGTTAGTACCTGTAC 57.941 43.478 0.00 0.00 36.35 2.90
3149 4839 4.522405 TGCCGTAAAGTTAGTACCTGTACA 59.478 41.667 9.90 0.00 38.48 2.90
3150 4840 5.010516 TGCCGTAAAGTTAGTACCTGTACAA 59.989 40.000 9.90 0.49 38.48 2.41
3151 4841 5.346011 GCCGTAAAGTTAGTACCTGTACAAC 59.654 44.000 9.90 10.84 38.48 3.32
3152 4842 6.681777 CCGTAAAGTTAGTACCTGTACAACT 58.318 40.000 9.90 12.50 38.15 3.16
3153 4843 7.147976 CCGTAAAGTTAGTACCTGTACAACTT 58.852 38.462 20.15 20.15 42.28 2.66
3154 4844 7.653311 CCGTAAAGTTAGTACCTGTACAACTTT 59.347 37.037 28.53 28.53 45.50 2.66
3155 4845 8.482429 CGTAAAGTTAGTACCTGTACAACTTTG 58.518 37.037 30.44 22.11 44.68 2.77
3156 4846 9.317936 GTAAAGTTAGTACCTGTACAACTTTGT 57.682 33.333 30.44 21.16 44.68 2.83
3157 4847 7.781548 AAGTTAGTACCTGTACAACTTTGTG 57.218 36.000 20.15 0.00 40.33 3.33
3158 4848 6.881570 AGTTAGTACCTGTACAACTTTGTGT 58.118 36.000 9.90 0.00 42.31 3.72
3159 4849 7.333323 AGTTAGTACCTGTACAACTTTGTGTT 58.667 34.615 9.90 0.00 42.31 3.32
3160 4850 8.477256 AGTTAGTACCTGTACAACTTTGTGTTA 58.523 33.333 9.90 0.00 42.31 2.41
3161 4851 9.097257 GTTAGTACCTGTACAACTTTGTGTTAA 57.903 33.333 9.90 0.00 42.31 2.01
3162 4852 7.781548 AGTACCTGTACAACTTTGTGTTAAG 57.218 36.000 9.90 0.00 42.31 1.85
3163 4853 7.558604 AGTACCTGTACAACTTTGTGTTAAGA 58.441 34.615 9.90 0.00 42.31 2.10
3164 4854 6.673154 ACCTGTACAACTTTGTGTTAAGAC 57.327 37.500 4.82 0.00 42.31 3.01
3165 4855 6.174760 ACCTGTACAACTTTGTGTTAAGACA 58.825 36.000 0.45 0.45 42.31 3.41
3275 4975 5.612709 GCTCTGATAAATTTCCGCGTACATC 60.613 44.000 4.92 0.00 0.00 3.06
3316 5016 4.133013 ACGAACTGTCTTAACACAACCT 57.867 40.909 0.00 0.00 0.00 3.50
3318 5018 4.939439 ACGAACTGTCTTAACACAACCTTT 59.061 37.500 0.00 0.00 0.00 3.11
3359 5059 5.385198 ACCAGAAAAGCAGGTGAAATAGAA 58.615 37.500 0.00 0.00 34.71 2.10
3401 5101 8.565896 ACATTCTATCAGAAAACATTACAGCA 57.434 30.769 0.00 0.00 37.82 4.41
3407 5107 2.157668 AGAAAACATTACAGCAGCGACG 59.842 45.455 0.00 0.00 0.00 5.12
3421 5210 1.009389 GCGACGCAGAAAGCTACTGT 61.009 55.000 16.42 3.97 42.61 3.55
3451 5241 9.545105 AAGAAGTATCATGATGATCTGAGAAAC 57.455 33.333 18.72 2.76 38.26 2.78
3471 5407 4.632538 ACACTAGCAAACAAGGTTTCAC 57.367 40.909 0.00 0.00 0.00 3.18
3522 5458 1.195448 GGACACATTCAGAACGCAGTG 59.805 52.381 0.00 0.00 45.00 3.66
3543 5570 6.064846 GTGAACACAGACAATCACTTGAAT 57.935 37.500 0.00 0.00 39.21 2.57
3552 5579 5.533903 AGACAATCACTTGAATTTCAGCAGT 59.466 36.000 0.00 0.00 36.20 4.40
3556 5583 2.624838 CACTTGAATTTCAGCAGTGGGT 59.375 45.455 17.78 2.38 33.69 4.51
3721 5750 1.810755 TCAGAGAAAAGCAGCAGCATG 59.189 47.619 3.17 0.00 45.49 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.209064 TAGTCTGCGTCGGTTGCTCC 62.209 60.000 0.00 0.00 0.00 4.70
6 7 1.071567 GTAGTCTGCGTCGGTTGCTC 61.072 60.000 0.00 0.00 0.00 4.26
7 8 1.080705 GTAGTCTGCGTCGGTTGCT 60.081 57.895 0.00 0.00 0.00 3.91
8 9 2.434134 CGTAGTCTGCGTCGGTTGC 61.434 63.158 1.72 0.00 0.00 4.17
9 10 1.081641 ACGTAGTCTGCGTCGGTTG 60.082 57.895 10.42 0.00 29.74 3.77
10 11 1.081641 CACGTAGTCTGCGTCGGTT 60.082 57.895 13.39 0.00 41.61 4.44
11 12 1.509644 TTCACGTAGTCTGCGTCGGT 61.510 55.000 13.39 0.00 41.61 4.69
12 13 0.793478 CTTCACGTAGTCTGCGTCGG 60.793 60.000 13.39 3.82 41.61 4.79
13 14 0.165295 TCTTCACGTAGTCTGCGTCG 59.835 55.000 13.39 9.34 41.61 5.12
14 15 1.977412 GTTCTTCACGTAGTCTGCGTC 59.023 52.381 13.39 0.00 41.61 5.19
15 16 1.607628 AGTTCTTCACGTAGTCTGCGT 59.392 47.619 10.42 10.42 41.61 5.24
16 17 2.243407 GAGTTCTTCACGTAGTCTGCG 58.757 52.381 8.93 8.93 41.61 5.18
17 18 2.229302 AGGAGTTCTTCACGTAGTCTGC 59.771 50.000 0.00 0.00 41.61 4.26
18 19 4.506886 AAGGAGTTCTTCACGTAGTCTG 57.493 45.455 0.00 0.00 41.61 3.51
19 20 4.341520 ACAAAGGAGTTCTTCACGTAGTCT 59.658 41.667 0.00 0.00 33.72 3.24
20 21 4.444720 CACAAAGGAGTTCTTCACGTAGTC 59.555 45.833 0.00 0.00 33.72 2.59
21 22 4.369182 CACAAAGGAGTTCTTCACGTAGT 58.631 43.478 0.00 0.00 36.09 2.73
22 23 3.184581 GCACAAAGGAGTTCTTCACGTAG 59.815 47.826 0.00 0.00 33.94 3.51
23 24 3.128349 GCACAAAGGAGTTCTTCACGTA 58.872 45.455 0.00 0.00 33.94 3.57
24 25 1.940613 GCACAAAGGAGTTCTTCACGT 59.059 47.619 0.00 0.00 33.94 4.49
25 26 1.264288 GGCACAAAGGAGTTCTTCACG 59.736 52.381 0.00 0.00 33.94 4.35
26 27 2.297701 TGGCACAAAGGAGTTCTTCAC 58.702 47.619 0.00 0.00 33.94 3.18
27 28 2.727123 TGGCACAAAGGAGTTCTTCA 57.273 45.000 0.00 0.00 33.94 3.02
41 42 2.764314 AAATCGCGCTGGATGGCAC 61.764 57.895 5.56 0.00 0.00 5.01
42 43 2.438254 AAATCGCGCTGGATGGCA 60.438 55.556 5.56 0.00 0.00 4.92
43 44 1.992233 TTCAAATCGCGCTGGATGGC 61.992 55.000 5.56 0.00 0.00 4.40
44 45 0.248215 GTTCAAATCGCGCTGGATGG 60.248 55.000 5.56 0.00 0.00 3.51
45 46 0.729116 AGTTCAAATCGCGCTGGATG 59.271 50.000 5.56 0.00 0.00 3.51
46 47 1.009829 GAGTTCAAATCGCGCTGGAT 58.990 50.000 5.56 0.00 0.00 3.41
47 48 1.019278 GGAGTTCAAATCGCGCTGGA 61.019 55.000 5.56 0.00 0.00 3.86
48 49 1.021390 AGGAGTTCAAATCGCGCTGG 61.021 55.000 5.56 0.00 0.00 4.85
49 50 0.798776 AAGGAGTTCAAATCGCGCTG 59.201 50.000 5.56 0.00 0.00 5.18
50 51 1.197721 CAAAGGAGTTCAAATCGCGCT 59.802 47.619 5.56 0.00 0.00 5.92
51 52 1.069227 ACAAAGGAGTTCAAATCGCGC 60.069 47.619 0.00 0.00 0.00 6.86
52 53 2.574322 CACAAAGGAGTTCAAATCGCG 58.426 47.619 0.00 0.00 0.00 5.87
53 54 2.319472 GCACAAAGGAGTTCAAATCGC 58.681 47.619 0.00 0.00 0.00 4.58
60 61 1.864029 GCAAACGGCACAAAGGAGTTC 60.864 52.381 0.00 0.00 43.97 3.01
83 84 3.138283 GGTTGATATGAGACCCATCCCAA 59.862 47.826 0.00 0.00 36.71 4.12
124 125 2.473530 TGCAGAAACAAGACAAAGCG 57.526 45.000 0.00 0.00 0.00 4.68
176 177 5.419542 TCATCGTTAGCTTGCTATCTGTTT 58.580 37.500 2.99 0.00 0.00 2.83
177 178 5.011090 TCATCGTTAGCTTGCTATCTGTT 57.989 39.130 2.99 0.00 0.00 3.16
195 196 3.256631 ACAGGGCAAACAGTCAAATCATC 59.743 43.478 0.00 0.00 0.00 2.92
200 201 2.828520 TGAAACAGGGCAAACAGTCAAA 59.171 40.909 0.00 0.00 0.00 2.69
361 362 3.832527 ACACAAATTGAGGCCTTACAGT 58.167 40.909 6.77 0.00 0.00 3.55
460 463 1.282248 GCTGCTGTTCACGAACGCTA 61.282 55.000 19.65 10.62 43.94 4.26
599 602 0.617820 ATCTACCACCAAGCTCGGGT 60.618 55.000 4.25 4.25 39.88 5.28
611 614 2.418609 CGTGCATGGAAGTGATCTACCA 60.419 50.000 0.00 0.00 36.83 3.25
693 696 9.935682 GAAATGATGTATGTGTATCGAAAATGT 57.064 29.630 0.00 0.00 0.00 2.71
805 818 1.372872 GGTTTGGCGTGAATGGCAC 60.373 57.895 0.00 0.00 44.88 5.01
1151 1172 5.017490 TCTCTACTGAACCTTCACCCTAAG 58.983 45.833 0.00 0.00 32.90 2.18
1236 1264 6.840780 ACCAATCTGCTAGTTTTGCTTTAT 57.159 33.333 0.00 0.00 0.00 1.40
1250 1278 5.247507 TGTATTATGCACAACCAATCTGC 57.752 39.130 0.00 0.00 0.00 4.26
1280 1308 4.698304 CCTTCCGTTCTTAAGCAATAACCA 59.302 41.667 0.00 0.00 0.00 3.67
1344 1382 3.861276 ATTTGGTACGATGTGAGACGA 57.139 42.857 0.00 0.00 0.00 4.20
1345 1383 5.100259 AGTAATTTGGTACGATGTGAGACG 58.900 41.667 0.00 0.00 0.00 4.18
1346 1384 6.237490 CGAAGTAATTTGGTACGATGTGAGAC 60.237 42.308 0.00 0.00 0.00 3.36
1347 1385 5.803461 CGAAGTAATTTGGTACGATGTGAGA 59.197 40.000 0.00 0.00 0.00 3.27
1348 1386 5.803461 TCGAAGTAATTTGGTACGATGTGAG 59.197 40.000 0.00 0.00 0.00 3.51
1352 1390 7.229228 TGAATCGAAGTAATTTGGTACGATG 57.771 36.000 0.00 0.00 38.62 3.84
1579 1622 8.940397 ATGGGTTAAAGGTATCCTTATTGATG 57.060 34.615 1.29 0.00 43.92 3.07
1711 1892 6.899114 ACTTTTTAACATCTCCTTTGTAGCG 58.101 36.000 0.00 0.00 0.00 4.26
1726 1910 8.667076 TGTTTACAGAGGGAGTACTTTTTAAC 57.333 34.615 0.00 0.00 0.00 2.01
1737 1923 8.818057 CGTCTTATTATTTGTTTACAGAGGGAG 58.182 37.037 0.00 0.00 0.00 4.30
1738 1924 8.316214 ACGTCTTATTATTTGTTTACAGAGGGA 58.684 33.333 0.00 0.00 0.00 4.20
1739 1925 8.488651 ACGTCTTATTATTTGTTTACAGAGGG 57.511 34.615 0.00 0.00 0.00 4.30
1798 1984 1.451504 CCCGGCCTCTGCATCATAA 59.548 57.895 0.00 0.00 40.13 1.90
1879 2065 5.144159 TCCACAATAGATACTCCCTCTGT 57.856 43.478 0.00 0.00 0.00 3.41
1882 2068 7.229506 CCAAAAATCCACAATAGATACTCCCTC 59.770 40.741 0.00 0.00 0.00 4.30
1884 2070 6.239036 GCCAAAAATCCACAATAGATACTCCC 60.239 42.308 0.00 0.00 0.00 4.30
1886 2072 7.067494 AGTGCCAAAAATCCACAATAGATACTC 59.933 37.037 0.00 0.00 32.09 2.59
1888 2074 7.100458 AGTGCCAAAAATCCACAATAGATAC 57.900 36.000 0.00 0.00 32.09 2.24
1890 2076 7.201938 CCATAGTGCCAAAAATCCACAATAGAT 60.202 37.037 0.00 0.00 32.09 1.98
1975 3533 3.254411 TGACAAAGTTGCACACTTGTGAA 59.746 39.130 13.64 0.00 45.77 3.18
2015 3573 4.915085 ACACAAGTATGTATTGCGCAAAAC 59.085 37.500 28.81 18.63 37.82 2.43
2146 3713 6.535508 TGTACAATTAAACACCCAAAAGTTGC 59.464 34.615 0.00 0.00 0.00 4.17
2256 3823 1.536174 CCCCCAAAGTGCCATGGTT 60.536 57.895 14.67 0.00 34.79 3.67
2588 4227 0.036483 TGCAGTCGCATAAAGCAGGA 60.036 50.000 0.00 0.00 45.36 3.86
2894 4584 4.184629 CACTTATTTTGAGACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
2895 4585 3.581332 ACACTTATTTTGAGACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
2896 4586 3.939066 ACACTTATTTTGAGACGGAGGG 58.061 45.455 0.00 0.00 0.00 4.30
2897 4587 5.238583 AGAACACTTATTTTGAGACGGAGG 58.761 41.667 0.00 0.00 0.00 4.30
2898 4588 5.926542 TGAGAACACTTATTTTGAGACGGAG 59.073 40.000 0.00 0.00 0.00 4.63
2899 4589 5.849510 TGAGAACACTTATTTTGAGACGGA 58.150 37.500 0.00 0.00 0.00 4.69
2900 4590 6.202954 ACTTGAGAACACTTATTTTGAGACGG 59.797 38.462 0.00 0.00 0.00 4.79
2901 4591 7.178712 ACTTGAGAACACTTATTTTGAGACG 57.821 36.000 0.00 0.00 0.00 4.18
2911 4601 9.880157 AAGTTGTACTAAACTTGAGAACACTTA 57.120 29.630 9.80 0.00 46.16 2.24
2912 4602 8.788325 AAGTTGTACTAAACTTGAGAACACTT 57.212 30.769 9.80 0.00 46.16 3.16
2944 4634 8.792633 TGTATGTCTAGCATTTTTGCTAACTTT 58.207 29.630 8.83 5.81 45.46 2.66
2945 4635 8.335532 TGTATGTCTAGCATTTTTGCTAACTT 57.664 30.769 8.83 9.83 45.46 2.66
2946 4636 7.921786 TGTATGTCTAGCATTTTTGCTAACT 57.078 32.000 8.83 4.51 45.46 2.24
2947 4637 8.964420 TTTGTATGTCTAGCATTTTTGCTAAC 57.036 30.769 8.83 9.88 45.46 2.34
2948 4638 9.008965 TCTTTGTATGTCTAGCATTTTTGCTAA 57.991 29.630 8.83 0.00 45.46 3.09
2949 4639 8.450964 GTCTTTGTATGTCTAGCATTTTTGCTA 58.549 33.333 7.41 7.41 44.28 3.49
2951 4641 7.308435 AGTCTTTGTATGTCTAGCATTTTTGC 58.692 34.615 5.22 0.00 38.94 3.68
2954 4644 9.502091 TGTAAGTCTTTGTATGTCTAGCATTTT 57.498 29.630 5.22 0.00 38.94 1.82
2955 4645 8.936864 GTGTAAGTCTTTGTATGTCTAGCATTT 58.063 33.333 5.22 0.00 38.94 2.32
2956 4646 7.275779 CGTGTAAGTCTTTGTATGTCTAGCATT 59.724 37.037 5.22 0.00 38.94 3.56
2957 4647 6.752351 CGTGTAAGTCTTTGTATGTCTAGCAT 59.248 38.462 0.00 5.25 41.42 3.79
2958 4648 6.090783 CGTGTAAGTCTTTGTATGTCTAGCA 58.909 40.000 0.00 0.00 0.00 3.49
2959 4649 5.004535 GCGTGTAAGTCTTTGTATGTCTAGC 59.995 44.000 0.00 0.00 0.00 3.42
2960 4650 6.323266 AGCGTGTAAGTCTTTGTATGTCTAG 58.677 40.000 0.00 0.00 0.00 2.43
2961 4651 6.263516 AGCGTGTAAGTCTTTGTATGTCTA 57.736 37.500 0.00 0.00 0.00 2.59
2962 4652 5.135508 AGCGTGTAAGTCTTTGTATGTCT 57.864 39.130 0.00 0.00 0.00 3.41
2963 4653 5.840940 AAGCGTGTAAGTCTTTGTATGTC 57.159 39.130 0.00 0.00 0.00 3.06
2964 4654 6.613755 AAAAGCGTGTAAGTCTTTGTATGT 57.386 33.333 0.00 0.00 31.21 2.29
2965 4655 7.529519 GTGTAAAAGCGTGTAAGTCTTTGTATG 59.470 37.037 0.00 0.00 31.21 2.39
2966 4656 7.568134 CGTGTAAAAGCGTGTAAGTCTTTGTAT 60.568 37.037 0.00 0.00 31.21 2.29
2967 4657 6.291743 CGTGTAAAAGCGTGTAAGTCTTTGTA 60.292 38.462 0.00 0.00 31.21 2.41
2968 4658 5.501252 CGTGTAAAAGCGTGTAAGTCTTTGT 60.501 40.000 0.00 0.00 31.21 2.83
2969 4659 4.896238 CGTGTAAAAGCGTGTAAGTCTTTG 59.104 41.667 0.00 0.00 31.21 2.77
2970 4660 4.551410 GCGTGTAAAAGCGTGTAAGTCTTT 60.551 41.667 0.00 0.00 0.00 2.52
2971 4661 3.060070 GCGTGTAAAAGCGTGTAAGTCTT 60.060 43.478 0.00 0.00 0.00 3.01
2972 4662 2.473984 GCGTGTAAAAGCGTGTAAGTCT 59.526 45.455 0.00 0.00 0.00 3.24
2973 4663 2.473984 AGCGTGTAAAAGCGTGTAAGTC 59.526 45.455 0.00 0.00 38.61 3.01
2974 4664 2.473984 GAGCGTGTAAAAGCGTGTAAGT 59.526 45.455 0.00 0.00 38.61 2.24
2975 4665 2.729882 AGAGCGTGTAAAAGCGTGTAAG 59.270 45.455 0.00 0.00 38.61 2.34
2976 4666 2.746269 AGAGCGTGTAAAAGCGTGTAA 58.254 42.857 0.00 0.00 38.61 2.41
2977 4667 2.427232 AGAGCGTGTAAAAGCGTGTA 57.573 45.000 0.00 0.00 38.61 2.90
2978 4668 1.578583 AAGAGCGTGTAAAAGCGTGT 58.421 45.000 0.00 0.00 38.61 4.49
2979 4669 2.560896 GAAAGAGCGTGTAAAAGCGTG 58.439 47.619 0.00 0.00 38.61 5.34
2980 4670 1.529865 GGAAAGAGCGTGTAAAAGCGT 59.470 47.619 0.00 0.00 38.61 5.07
2981 4671 1.529438 TGGAAAGAGCGTGTAAAAGCG 59.471 47.619 0.00 0.00 38.61 4.68
2982 4672 3.437049 AGATGGAAAGAGCGTGTAAAAGC 59.563 43.478 0.00 0.00 0.00 3.51
2983 4673 6.147164 TGTTAGATGGAAAGAGCGTGTAAAAG 59.853 38.462 0.00 0.00 0.00 2.27
2984 4674 5.992829 TGTTAGATGGAAAGAGCGTGTAAAA 59.007 36.000 0.00 0.00 0.00 1.52
2985 4675 5.543714 TGTTAGATGGAAAGAGCGTGTAAA 58.456 37.500 0.00 0.00 0.00 2.01
2986 4676 5.142061 TGTTAGATGGAAAGAGCGTGTAA 57.858 39.130 0.00 0.00 0.00 2.41
2987 4677 4.794278 TGTTAGATGGAAAGAGCGTGTA 57.206 40.909 0.00 0.00 0.00 2.90
2988 4678 3.678056 TGTTAGATGGAAAGAGCGTGT 57.322 42.857 0.00 0.00 0.00 4.49
2989 4679 3.125316 GGTTGTTAGATGGAAAGAGCGTG 59.875 47.826 0.00 0.00 0.00 5.34
2990 4680 3.244422 TGGTTGTTAGATGGAAAGAGCGT 60.244 43.478 0.00 0.00 0.00 5.07
2991 4681 3.334691 TGGTTGTTAGATGGAAAGAGCG 58.665 45.455 0.00 0.00 0.00 5.03
2992 4682 5.415701 TGATTGGTTGTTAGATGGAAAGAGC 59.584 40.000 0.00 0.00 0.00 4.09
2993 4683 6.430925 TGTGATTGGTTGTTAGATGGAAAGAG 59.569 38.462 0.00 0.00 0.00 2.85
2994 4684 6.303054 TGTGATTGGTTGTTAGATGGAAAGA 58.697 36.000 0.00 0.00 0.00 2.52
2995 4685 6.573664 TGTGATTGGTTGTTAGATGGAAAG 57.426 37.500 0.00 0.00 0.00 2.62
2996 4686 6.968263 TTGTGATTGGTTGTTAGATGGAAA 57.032 33.333 0.00 0.00 0.00 3.13
2997 4687 6.239176 GGTTTGTGATTGGTTGTTAGATGGAA 60.239 38.462 0.00 0.00 0.00 3.53
2998 4688 5.242838 GGTTTGTGATTGGTTGTTAGATGGA 59.757 40.000 0.00 0.00 0.00 3.41
2999 4689 5.243730 AGGTTTGTGATTGGTTGTTAGATGG 59.756 40.000 0.00 0.00 0.00 3.51
3000 4690 6.207417 AGAGGTTTGTGATTGGTTGTTAGATG 59.793 38.462 0.00 0.00 0.00 2.90
3001 4691 6.306987 AGAGGTTTGTGATTGGTTGTTAGAT 58.693 36.000 0.00 0.00 0.00 1.98
3002 4692 5.690865 AGAGGTTTGTGATTGGTTGTTAGA 58.309 37.500 0.00 0.00 0.00 2.10
3003 4693 5.048713 GGAGAGGTTTGTGATTGGTTGTTAG 60.049 44.000 0.00 0.00 0.00 2.34
3004 4694 4.825085 GGAGAGGTTTGTGATTGGTTGTTA 59.175 41.667 0.00 0.00 0.00 2.41
3005 4695 3.636764 GGAGAGGTTTGTGATTGGTTGTT 59.363 43.478 0.00 0.00 0.00 2.83
3006 4696 3.222603 GGAGAGGTTTGTGATTGGTTGT 58.777 45.455 0.00 0.00 0.00 3.32
3007 4697 2.558359 GGGAGAGGTTTGTGATTGGTTG 59.442 50.000 0.00 0.00 0.00 3.77
3008 4698 2.490902 GGGGAGAGGTTTGTGATTGGTT 60.491 50.000 0.00 0.00 0.00 3.67
3009 4699 1.075536 GGGGAGAGGTTTGTGATTGGT 59.924 52.381 0.00 0.00 0.00 3.67
3010 4700 1.616994 GGGGGAGAGGTTTGTGATTGG 60.617 57.143 0.00 0.00 0.00 3.16
3011 4701 1.839424 GGGGGAGAGGTTTGTGATTG 58.161 55.000 0.00 0.00 0.00 2.67
3032 4722 0.972471 GCCCACCCCCTGAAAATCAG 60.972 60.000 0.32 0.32 43.91 2.90
3033 4723 1.078347 GCCCACCCCCTGAAAATCA 59.922 57.895 0.00 0.00 0.00 2.57
3034 4724 1.685765 GGCCCACCCCCTGAAAATC 60.686 63.158 0.00 0.00 0.00 2.17
3035 4725 2.449777 GGCCCACCCCCTGAAAAT 59.550 61.111 0.00 0.00 0.00 1.82
3036 4726 4.293671 CGGCCCACCCCCTGAAAA 62.294 66.667 0.00 0.00 0.00 2.29
3050 4740 3.406595 AATAGGTGAGCAGGGCGGC 62.407 63.158 0.00 0.00 0.00 6.53
3051 4741 1.524621 CAATAGGTGAGCAGGGCGG 60.525 63.158 0.00 0.00 0.00 6.13
3052 4742 0.811616 GTCAATAGGTGAGCAGGGCG 60.812 60.000 0.00 0.00 36.74 6.13
3053 4743 3.086733 GTCAATAGGTGAGCAGGGC 57.913 57.895 0.00 0.00 36.74 5.19
3059 4749 4.848357 ACCTTGATTGGTCAATAGGTGAG 58.152 43.478 14.14 2.65 41.74 3.51
3060 4750 4.927267 ACCTTGATTGGTCAATAGGTGA 57.073 40.909 14.14 0.00 41.74 4.02
3061 4751 6.127730 GGTTAACCTTGATTGGTCAATAGGTG 60.128 42.308 17.83 1.88 42.22 4.00
3062 4752 5.949952 GGTTAACCTTGATTGGTCAATAGGT 59.050 40.000 17.83 10.70 43.99 3.08
3063 4753 5.949354 TGGTTAACCTTGATTGGTCAATAGG 59.051 40.000 24.78 9.71 43.08 2.57
3064 4754 7.201821 GGATGGTTAACCTTGATTGGTCAATAG 60.202 40.741 24.78 0.00 43.08 1.73
3065 4755 6.605594 GGATGGTTAACCTTGATTGGTCAATA 59.394 38.462 24.78 0.07 43.08 1.90
3066 4756 5.422012 GGATGGTTAACCTTGATTGGTCAAT 59.578 40.000 24.78 5.84 43.08 2.57
3067 4757 4.770010 GGATGGTTAACCTTGATTGGTCAA 59.230 41.667 24.78 0.73 41.89 3.18
3068 4758 4.044065 AGGATGGTTAACCTTGATTGGTCA 59.956 41.667 24.78 1.27 39.83 4.02
3069 4759 4.399303 CAGGATGGTTAACCTTGATTGGTC 59.601 45.833 24.78 9.78 39.83 4.02
3070 4760 4.202673 ACAGGATGGTTAACCTTGATTGGT 60.203 41.667 24.78 11.57 43.62 3.67
3071 4761 4.344104 ACAGGATGGTTAACCTTGATTGG 58.656 43.478 24.78 11.00 43.62 3.16
3072 4762 7.461182 TTTACAGGATGGTTAACCTTGATTG 57.539 36.000 24.78 17.36 43.62 2.67
3073 4763 7.309805 GCTTTTACAGGATGGTTAACCTTGATT 60.310 37.037 24.78 8.08 43.62 2.57
3074 4764 6.152831 GCTTTTACAGGATGGTTAACCTTGAT 59.847 38.462 24.78 10.77 43.62 2.57
3075 4765 5.475564 GCTTTTACAGGATGGTTAACCTTGA 59.524 40.000 24.78 5.89 43.62 3.02
3076 4766 5.336451 GGCTTTTACAGGATGGTTAACCTTG 60.336 44.000 24.78 18.27 43.62 3.61
3077 4767 4.770531 GGCTTTTACAGGATGGTTAACCTT 59.229 41.667 24.78 18.87 43.62 3.50
3078 4768 4.044191 AGGCTTTTACAGGATGGTTAACCT 59.956 41.667 24.78 10.91 43.62 3.50
3079 4769 4.157840 CAGGCTTTTACAGGATGGTTAACC 59.842 45.833 18.27 18.27 43.62 2.85
3080 4770 4.765339 ACAGGCTTTTACAGGATGGTTAAC 59.235 41.667 0.00 0.00 43.62 2.01
3081 4771 4.993028 ACAGGCTTTTACAGGATGGTTAA 58.007 39.130 0.00 0.00 43.62 2.01
3082 4772 4.650972 ACAGGCTTTTACAGGATGGTTA 57.349 40.909 0.00 0.00 43.62 2.85
3083 4773 3.525800 ACAGGCTTTTACAGGATGGTT 57.474 42.857 0.00 0.00 43.62 3.67
3084 4774 4.650972 TTACAGGCTTTTACAGGATGGT 57.349 40.909 0.00 0.00 43.62 3.55
3085 4775 5.220854 CGATTTACAGGCTTTTACAGGATGG 60.221 44.000 0.00 0.00 43.62 3.51
3086 4776 5.354234 ACGATTTACAGGCTTTTACAGGATG 59.646 40.000 0.00 0.00 46.00 3.51
3087 4777 5.497474 ACGATTTACAGGCTTTTACAGGAT 58.503 37.500 0.00 0.00 0.00 3.24
3088 4778 4.901868 ACGATTTACAGGCTTTTACAGGA 58.098 39.130 0.00 0.00 0.00 3.86
3089 4779 5.622770 AACGATTTACAGGCTTTTACAGG 57.377 39.130 0.00 0.00 0.00 4.00
3090 4780 6.435428 ACAAACGATTTACAGGCTTTTACAG 58.565 36.000 0.00 0.00 0.00 2.74
3091 4781 6.380095 ACAAACGATTTACAGGCTTTTACA 57.620 33.333 0.00 0.00 0.00 2.41
3092 4782 7.771219 GTACAAACGATTTACAGGCTTTTAC 57.229 36.000 0.00 0.00 0.00 2.01
3109 4799 2.723618 CGGCAATGCTACACGTACAAAC 60.724 50.000 4.82 0.00 0.00 2.93
3110 4800 1.461512 CGGCAATGCTACACGTACAAA 59.538 47.619 4.82 0.00 0.00 2.83
3111 4801 1.072391 CGGCAATGCTACACGTACAA 58.928 50.000 4.82 0.00 0.00 2.41
3112 4802 0.038067 ACGGCAATGCTACACGTACA 60.038 50.000 4.82 0.00 35.85 2.90
3113 4803 1.912001 TACGGCAATGCTACACGTAC 58.088 50.000 4.82 0.00 38.79 3.67
3114 4804 2.651135 TTACGGCAATGCTACACGTA 57.349 45.000 4.82 7.76 38.79 3.57
3115 4805 1.730064 CTTTACGGCAATGCTACACGT 59.270 47.619 4.82 8.83 41.10 4.49
3116 4806 1.730064 ACTTTACGGCAATGCTACACG 59.270 47.619 4.82 2.29 0.00 4.49
3117 4807 3.824414 AACTTTACGGCAATGCTACAC 57.176 42.857 4.82 0.00 0.00 2.90
3118 4808 4.571919 ACTAACTTTACGGCAATGCTACA 58.428 39.130 4.82 0.00 0.00 2.74
3119 4809 5.006068 GGTACTAACTTTACGGCAATGCTAC 59.994 44.000 4.82 0.00 0.00 3.58
3120 4810 5.105228 AGGTACTAACTTTACGGCAATGCTA 60.105 40.000 4.82 0.00 36.02 3.49
3121 4811 3.937079 GGTACTAACTTTACGGCAATGCT 59.063 43.478 4.82 0.00 0.00 3.79
3122 4812 3.937079 AGGTACTAACTTTACGGCAATGC 59.063 43.478 0.00 0.00 36.02 3.56
3123 4813 4.933400 ACAGGTACTAACTTTACGGCAATG 59.067 41.667 0.00 0.00 36.02 2.82
3124 4814 5.156608 ACAGGTACTAACTTTACGGCAAT 57.843 39.130 0.00 0.00 36.02 3.56
3125 4815 4.605640 ACAGGTACTAACTTTACGGCAA 57.394 40.909 0.00 0.00 36.02 4.52
3126 4816 4.522405 TGTACAGGTACTAACTTTACGGCA 59.478 41.667 10.62 0.00 36.02 5.69
3127 4817 5.059404 TGTACAGGTACTAACTTTACGGC 57.941 43.478 10.62 0.00 36.02 5.68
3128 4818 6.681777 AGTTGTACAGGTACTAACTTTACGG 58.318 40.000 10.62 0.00 36.02 4.02
3129 4819 8.482429 CAAAGTTGTACAGGTACTAACTTTACG 58.518 37.037 28.02 21.09 44.14 3.18
3130 4820 9.317936 ACAAAGTTGTACAGGTACTAACTTTAC 57.682 33.333 28.02 12.79 44.14 2.01
3131 4821 9.316730 CACAAAGTTGTACAGGTACTAACTTTA 57.683 33.333 28.02 6.21 44.14 1.85
3132 4822 7.825761 ACACAAAGTTGTACAGGTACTAACTTT 59.174 33.333 25.91 25.91 45.14 2.66
3133 4823 7.333323 ACACAAAGTTGTACAGGTACTAACTT 58.667 34.615 21.18 21.18 42.28 2.66
3134 4824 6.881570 ACACAAAGTTGTACAGGTACTAACT 58.118 36.000 10.62 13.48 39.91 2.24
3135 4825 7.543947 AACACAAAGTTGTACAGGTACTAAC 57.456 36.000 10.62 11.87 39.91 2.34
3136 4826 9.316730 CTTAACACAAAGTTGTACAGGTACTAA 57.683 33.333 10.62 1.85 41.50 2.24
3137 4827 8.694540 TCTTAACACAAAGTTGTACAGGTACTA 58.305 33.333 10.62 0.72 41.50 1.82
3138 4828 7.493645 GTCTTAACACAAAGTTGTACAGGTACT 59.506 37.037 10.62 0.00 41.50 2.73
3139 4829 7.278424 TGTCTTAACACAAAGTTGTACAGGTAC 59.722 37.037 2.66 2.66 41.50 3.34
3140 4830 7.329499 TGTCTTAACACAAAGTTGTACAGGTA 58.671 34.615 0.00 0.00 41.50 3.08
3141 4831 6.174760 TGTCTTAACACAAAGTTGTACAGGT 58.825 36.000 0.00 0.00 41.50 4.00
3142 4832 6.671614 TGTCTTAACACAAAGTTGTACAGG 57.328 37.500 0.00 0.00 41.50 4.00
3275 4975 2.370281 TTCTAACGCTCAGCAAGAGG 57.630 50.000 0.00 1.95 44.86 3.69
3318 5018 5.935945 TCTGGTGTTTCTGGATGTAGAAAA 58.064 37.500 2.83 0.00 45.33 2.29
3327 5027 2.951642 CTGCTTTTCTGGTGTTTCTGGA 59.048 45.455 0.00 0.00 0.00 3.86
3384 5084 3.186409 GTCGCTGCTGTAATGTTTTCTGA 59.814 43.478 0.00 0.00 0.00 3.27
3407 5107 5.929415 ACTTCTTTCTACAGTAGCTTTCTGC 59.071 40.000 15.43 0.00 43.29 4.26
3471 5407 2.773993 ACGGTATGGGTTGTTGTAGG 57.226 50.000 0.00 0.00 0.00 3.18
3522 5458 7.195646 TGAAATTCAAGTGATTGTCTGTGTTC 58.804 34.615 0.00 0.00 0.00 3.18
3543 5570 0.250727 GGTGCTACCCACTGCTGAAA 60.251 55.000 0.00 0.00 44.08 2.69
3593 5620 1.224075 CCATATGAACAGCTCGCCAG 58.776 55.000 3.65 0.00 0.00 4.85
3759 5797 7.392953 TGTCATTTTAAGTATCCATTCTGCACA 59.607 33.333 0.00 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.