Multiple sequence alignment - TraesCS2B01G290700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G290700 chr2B 100.000 2519 0 0 1 2519 403563647 403561129 0.000000e+00 4652.0
1 TraesCS2B01G290700 chr2D 94.125 1583 81 7 321 1901 335548088 335546516 0.000000e+00 2398.0
2 TraesCS2B01G290700 chr2D 95.846 337 13 1 2011 2346 335546502 335546166 6.130000e-151 544.0
3 TraesCS2B01G290700 chr2D 96.084 332 12 1 1 331 306416616 306416947 7.930000e-150 540.0
4 TraesCS2B01G290700 chr2D 75.748 301 50 7 333 617 24218097 24218390 2.030000e-26 130.0
5 TraesCS2B01G290700 chr2A 95.421 1223 46 6 710 1924 446020723 446019503 0.000000e+00 1940.0
6 TraesCS2B01G290700 chr2A 96.429 336 12 0 2011 2346 446019509 446019174 2.830000e-154 555.0
7 TraesCS2B01G290700 chr2A 88.630 387 43 1 321 706 446042520 446042134 1.050000e-128 470.0
8 TraesCS2B01G290700 chr2A 85.135 148 19 2 2375 2519 750583078 750583225 5.610000e-32 148.0
9 TraesCS2B01G290700 chr2A 85.135 148 19 2 2375 2519 750621570 750621717 5.610000e-32 148.0
10 TraesCS2B01G290700 chr2A 83.784 148 21 2 2375 2519 750743482 750743335 1.220000e-28 137.0
11 TraesCS2B01G290700 chr5D 97.188 320 9 0 1 320 539550230 539550549 2.200000e-150 542.0
12 TraesCS2B01G290700 chr5D 96.573 321 11 0 1 321 199087019 199086699 1.330000e-147 532.0
13 TraesCS2B01G290700 chr5D 96.285 323 12 0 1 323 475395054 475394732 4.770000e-147 531.0
14 TraesCS2B01G290700 chr5D 96.285 323 11 1 1 322 526307330 526307008 1.720000e-146 529.0
15 TraesCS2B01G290700 chr5D 84.459 148 20 2 2375 2519 214907285 214907138 2.610000e-30 143.0
16 TraesCS2B01G290700 chr5D 88.889 54 4 2 334 386 210380253 210380305 5.820000e-07 65.8
17 TraesCS2B01G290700 chr3D 96.562 320 11 0 1 320 375100350 375100669 4.770000e-147 531.0
18 TraesCS2B01G290700 chr6D 96.262 321 12 0 1 321 139612834 139612514 6.170000e-146 527.0
19 TraesCS2B01G290700 chr6D 95.988 324 12 1 1 323 14798213 14797890 2.220000e-145 525.0
20 TraesCS2B01G290700 chr6D 92.254 142 11 0 2375 2516 260053357 260053498 4.250000e-48 202.0
21 TraesCS2B01G290700 chr6D 88.889 54 4 2 334 386 446934557 446934505 5.820000e-07 65.8
22 TraesCS2B01G290700 chr7D 95.092 326 14 2 1 325 298802149 298802473 1.730000e-141 512.0
23 TraesCS2B01G290700 chr7D 82.946 129 13 6 335 456 489905641 489905767 9.530000e-20 108.0
24 TraesCS2B01G290700 chr7B 93.793 145 9 0 2375 2519 683975967 683975823 4.220000e-53 219.0
25 TraesCS2B01G290700 chr7B 77.455 275 35 13 332 597 549604388 549604644 3.380000e-29 139.0
26 TraesCS2B01G290700 chr7B 85.000 100 8 4 335 433 518409568 518409661 7.420000e-16 95.3
27 TraesCS2B01G290700 chr7B 84.000 100 9 4 335 433 518401460 518401553 3.450000e-14 89.8
28 TraesCS2B01G290700 chr7B 95.455 44 2 0 560 603 526646284 526646241 1.250000e-08 71.3
29 TraesCS2B01G290700 chr3B 93.103 145 10 0 2375 2519 486619263 486619407 1.960000e-51 213.0
30 TraesCS2B01G290700 chr7A 92.308 143 11 0 2375 2517 151860622 151860480 1.180000e-48 204.0
31 TraesCS2B01G290700 chr1A 84.354 147 20 2 2375 2518 13944804 13944950 9.390000e-30 141.0
32 TraesCS2B01G290700 chr1D 78.736 174 26 7 378 550 59970655 59970818 3.430000e-19 106.0
33 TraesCS2B01G290700 chr3A 79.612 103 13 7 333 430 657390151 657390052 1.620000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G290700 chr2B 403561129 403563647 2518 True 4652.0 4652 100.0000 1 2519 1 chr2B.!!$R1 2518
1 TraesCS2B01G290700 chr2D 335546166 335548088 1922 True 1471.0 2398 94.9855 321 2346 2 chr2D.!!$R1 2025
2 TraesCS2B01G290700 chr2A 446019174 446020723 1549 True 1247.5 1940 95.9250 710 2346 2 chr2A.!!$R3 1636

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
484 485 0.809385 GCGTTTTAAGGAAGAGGCCC 59.191 55.0 0.0 0.0 0.0 5.8 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2354 2364 0.030235 GGTGGGTGTTGTTTTCTCGC 59.97 55.0 0.0 0.0 0.0 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.922058 CATGAAGAAAGCAATAGCAATAAACT 57.078 30.769 0.00 0.00 45.49 2.66
26 27 8.804743 CATGAAGAAAGCAATAGCAATAAACTG 58.195 33.333 0.00 0.00 45.49 3.16
27 28 8.109705 TGAAGAAAGCAATAGCAATAAACTGA 57.890 30.769 0.00 0.00 45.49 3.41
28 29 8.575589 TGAAGAAAGCAATAGCAATAAACTGAA 58.424 29.630 0.00 0.00 45.49 3.02
29 30 8.748380 AAGAAAGCAATAGCAATAAACTGAAC 57.252 30.769 0.00 0.00 45.49 3.18
30 31 7.315890 AGAAAGCAATAGCAATAAACTGAACC 58.684 34.615 0.00 0.00 45.49 3.62
31 32 6.588719 AAGCAATAGCAATAAACTGAACCA 57.411 33.333 0.00 0.00 45.49 3.67
32 33 6.780457 AGCAATAGCAATAAACTGAACCAT 57.220 33.333 0.00 0.00 45.49 3.55
33 34 6.799512 AGCAATAGCAATAAACTGAACCATC 58.200 36.000 0.00 0.00 45.49 3.51
34 35 6.377996 AGCAATAGCAATAAACTGAACCATCA 59.622 34.615 0.00 0.00 45.49 3.07
35 36 7.069085 AGCAATAGCAATAAACTGAACCATCAT 59.931 33.333 0.00 0.00 45.49 2.45
36 37 7.707893 GCAATAGCAATAAACTGAACCATCATT 59.292 33.333 0.00 0.00 41.58 2.57
40 41 7.205297 AGCAATAAACTGAACCATCATTATGC 58.795 34.615 0.00 0.00 34.37 3.14
41 42 7.069085 AGCAATAAACTGAACCATCATTATGCT 59.931 33.333 0.00 0.00 34.37 3.79
42 43 8.352201 GCAATAAACTGAACCATCATTATGCTA 58.648 33.333 0.00 0.00 34.37 3.49
45 46 6.382869 AACTGAACCATCATTATGCTAAGC 57.617 37.500 0.00 0.00 34.37 3.09
46 47 5.688807 ACTGAACCATCATTATGCTAAGCT 58.311 37.500 0.00 0.00 34.37 3.74
47 48 6.830912 ACTGAACCATCATTATGCTAAGCTA 58.169 36.000 0.00 0.00 34.37 3.32
48 49 7.282585 ACTGAACCATCATTATGCTAAGCTAA 58.717 34.615 0.00 0.00 34.37 3.09
49 50 7.227512 ACTGAACCATCATTATGCTAAGCTAAC 59.772 37.037 0.00 0.00 34.37 2.34
50 51 6.202762 TGAACCATCATTATGCTAAGCTAACG 59.797 38.462 0.00 0.00 0.00 3.18
51 52 5.853936 ACCATCATTATGCTAAGCTAACGA 58.146 37.500 0.00 0.00 0.00 3.85
52 53 5.928839 ACCATCATTATGCTAAGCTAACGAG 59.071 40.000 0.00 0.00 0.00 4.18
53 54 5.928839 CCATCATTATGCTAAGCTAACGAGT 59.071 40.000 0.00 0.00 0.00 4.18
54 55 6.128715 CCATCATTATGCTAAGCTAACGAGTG 60.129 42.308 0.00 0.00 0.00 3.51
55 56 5.902681 TCATTATGCTAAGCTAACGAGTGT 58.097 37.500 0.00 0.00 0.00 3.55
56 57 5.748630 TCATTATGCTAAGCTAACGAGTGTG 59.251 40.000 0.00 0.00 0.00 3.82
57 58 3.594603 ATGCTAAGCTAACGAGTGTGT 57.405 42.857 0.00 0.00 0.00 3.72
58 59 2.942710 TGCTAAGCTAACGAGTGTGTC 58.057 47.619 0.00 0.00 0.00 3.67
59 60 2.557056 TGCTAAGCTAACGAGTGTGTCT 59.443 45.455 0.00 0.00 0.00 3.41
60 61 3.005472 TGCTAAGCTAACGAGTGTGTCTT 59.995 43.478 0.00 0.00 0.00 3.01
61 62 3.365220 GCTAAGCTAACGAGTGTGTCTTG 59.635 47.826 0.00 0.00 0.00 3.02
62 63 3.454371 AAGCTAACGAGTGTGTCTTGT 57.546 42.857 0.00 0.00 42.12 3.16
63 64 3.014604 AGCTAACGAGTGTGTCTTGTC 57.985 47.619 0.00 0.00 39.66 3.18
64 65 2.059541 GCTAACGAGTGTGTCTTGTCC 58.940 52.381 0.00 0.00 39.66 4.02
65 66 2.545113 GCTAACGAGTGTGTCTTGTCCA 60.545 50.000 0.00 0.00 39.66 4.02
66 67 2.910688 AACGAGTGTGTCTTGTCCAT 57.089 45.000 0.00 0.00 39.66 3.41
67 68 2.440539 ACGAGTGTGTCTTGTCCATC 57.559 50.000 0.00 0.00 36.08 3.51
68 69 1.686587 ACGAGTGTGTCTTGTCCATCA 59.313 47.619 0.00 0.00 36.08 3.07
69 70 2.061773 CGAGTGTGTCTTGTCCATCAC 58.938 52.381 0.00 0.00 0.00 3.06
70 71 2.545742 CGAGTGTGTCTTGTCCATCACA 60.546 50.000 0.00 0.00 38.26 3.58
71 72 3.668447 GAGTGTGTCTTGTCCATCACAT 58.332 45.455 0.00 0.00 41.64 3.21
72 73 3.668447 AGTGTGTCTTGTCCATCACATC 58.332 45.455 0.00 0.00 41.64 3.06
73 74 3.071457 AGTGTGTCTTGTCCATCACATCA 59.929 43.478 0.00 0.00 41.64 3.07
74 75 4.005650 GTGTGTCTTGTCCATCACATCAT 58.994 43.478 0.00 0.00 41.64 2.45
75 76 4.456911 GTGTGTCTTGTCCATCACATCATT 59.543 41.667 0.00 0.00 41.64 2.57
76 77 4.696877 TGTGTCTTGTCCATCACATCATTC 59.303 41.667 0.00 0.00 36.17 2.67
77 78 4.940046 GTGTCTTGTCCATCACATCATTCT 59.060 41.667 0.00 0.00 33.90 2.40
78 79 5.064452 GTGTCTTGTCCATCACATCATTCTC 59.936 44.000 0.00 0.00 33.90 2.87
79 80 4.574013 GTCTTGTCCATCACATCATTCTCC 59.426 45.833 0.00 0.00 33.90 3.71
80 81 4.472470 TCTTGTCCATCACATCATTCTCCT 59.528 41.667 0.00 0.00 33.90 3.69
81 82 5.662657 TCTTGTCCATCACATCATTCTCCTA 59.337 40.000 0.00 0.00 33.90 2.94
82 83 5.955961 TGTCCATCACATCATTCTCCTAA 57.044 39.130 0.00 0.00 0.00 2.69
83 84 6.505048 TGTCCATCACATCATTCTCCTAAT 57.495 37.500 0.00 0.00 0.00 1.73
84 85 6.293698 TGTCCATCACATCATTCTCCTAATG 58.706 40.000 0.00 0.00 0.00 1.90
85 86 6.100134 TGTCCATCACATCATTCTCCTAATGA 59.900 38.462 3.13 3.13 40.50 2.57
86 87 7.166851 GTCCATCACATCATTCTCCTAATGAT 58.833 38.462 7.28 7.28 45.40 2.45
94 95 6.119240 TCATTCTCCTAATGATGTGATCCC 57.881 41.667 0.00 0.00 32.21 3.85
95 96 4.607293 TTCTCCTAATGATGTGATCCCG 57.393 45.455 0.00 0.00 0.00 5.14
96 97 3.576861 TCTCCTAATGATGTGATCCCGT 58.423 45.455 0.00 0.00 0.00 5.28
97 98 3.967326 TCTCCTAATGATGTGATCCCGTT 59.033 43.478 0.00 0.00 0.00 4.44
98 99 5.144832 TCTCCTAATGATGTGATCCCGTTA 58.855 41.667 0.00 0.00 0.00 3.18
99 100 5.780282 TCTCCTAATGATGTGATCCCGTTAT 59.220 40.000 0.00 0.00 0.00 1.89
100 101 6.037786 TCCTAATGATGTGATCCCGTTATC 57.962 41.667 0.00 0.00 0.00 1.75
101 102 5.542251 TCCTAATGATGTGATCCCGTTATCA 59.458 40.000 0.00 0.00 33.48 2.15
102 103 6.042666 TCCTAATGATGTGATCCCGTTATCAA 59.957 38.462 0.00 0.00 37.61 2.57
103 104 6.710295 CCTAATGATGTGATCCCGTTATCAAA 59.290 38.462 0.00 0.00 37.61 2.69
104 105 6.377327 AATGATGTGATCCCGTTATCAAAC 57.623 37.500 0.00 0.00 37.61 2.93
131 132 7.871853 ACAACACATGTCTATGGTTAGAAAAC 58.128 34.615 0.00 0.00 37.96 2.43
132 133 7.040686 ACAACACATGTCTATGGTTAGAAAACC 60.041 37.037 0.00 0.22 46.83 3.27
148 149 9.841880 GTTAGAAAACCTTAACCATCTTTGATC 57.158 33.333 0.00 0.00 0.00 2.92
149 150 9.581289 TTAGAAAACCTTAACCATCTTTGATCA 57.419 29.630 0.00 0.00 0.00 2.92
150 151 8.477419 AGAAAACCTTAACCATCTTTGATCAA 57.523 30.769 3.38 3.38 0.00 2.57
151 152 8.360390 AGAAAACCTTAACCATCTTTGATCAAC 58.640 33.333 7.89 0.00 0.00 3.18
152 153 5.880054 ACCTTAACCATCTTTGATCAACG 57.120 39.130 7.89 6.62 0.00 4.10
153 154 5.556915 ACCTTAACCATCTTTGATCAACGA 58.443 37.500 16.08 16.08 0.00 3.85
154 155 5.643777 ACCTTAACCATCTTTGATCAACGAG 59.356 40.000 18.24 10.23 0.00 4.18
155 156 5.447818 CCTTAACCATCTTTGATCAACGAGC 60.448 44.000 18.24 0.00 0.00 5.03
156 157 3.340814 ACCATCTTTGATCAACGAGCT 57.659 42.857 18.24 2.03 0.00 4.09
157 158 4.471904 ACCATCTTTGATCAACGAGCTA 57.528 40.909 18.24 0.00 0.00 3.32
158 159 4.437239 ACCATCTTTGATCAACGAGCTAG 58.563 43.478 18.24 8.24 0.00 3.42
159 160 4.081420 ACCATCTTTGATCAACGAGCTAGT 60.081 41.667 18.24 10.56 0.00 2.57
160 161 4.505922 CCATCTTTGATCAACGAGCTAGTC 59.494 45.833 18.24 0.00 0.00 2.59
161 162 5.347342 CATCTTTGATCAACGAGCTAGTCT 58.653 41.667 18.24 0.00 0.00 3.24
162 163 6.460261 CCATCTTTGATCAACGAGCTAGTCTA 60.460 42.308 18.24 0.00 0.00 2.59
163 164 6.125327 TCTTTGATCAACGAGCTAGTCTAG 57.875 41.667 7.89 2.18 0.00 2.43
164 165 5.648526 TCTTTGATCAACGAGCTAGTCTAGT 59.351 40.000 7.89 0.00 31.68 2.57
165 166 6.822170 TCTTTGATCAACGAGCTAGTCTAGTA 59.178 38.462 7.89 0.00 30.15 1.82
166 167 6.606234 TTGATCAACGAGCTAGTCTAGTAG 57.394 41.667 3.38 3.39 30.15 2.57
167 168 5.915175 TGATCAACGAGCTAGTCTAGTAGA 58.085 41.667 8.68 0.00 30.15 2.59
168 169 5.986741 TGATCAACGAGCTAGTCTAGTAGAG 59.013 44.000 8.68 1.49 30.15 2.43
169 170 4.695396 TCAACGAGCTAGTCTAGTAGAGG 58.305 47.826 8.68 0.00 30.15 3.69
170 171 3.116079 ACGAGCTAGTCTAGTAGAGGC 57.884 52.381 8.68 5.92 0.00 4.70
171 172 2.435069 ACGAGCTAGTCTAGTAGAGGCA 59.565 50.000 16.80 0.65 29.21 4.75
172 173 3.071892 ACGAGCTAGTCTAGTAGAGGCAT 59.928 47.826 16.80 6.81 29.21 4.40
173 174 4.283978 ACGAGCTAGTCTAGTAGAGGCATA 59.716 45.833 16.80 3.22 29.21 3.14
174 175 4.628333 CGAGCTAGTCTAGTAGAGGCATAC 59.372 50.000 16.80 9.78 29.21 2.39
175 176 5.568023 CGAGCTAGTCTAGTAGAGGCATACT 60.568 48.000 16.80 7.45 39.35 2.12
176 177 6.350361 CGAGCTAGTCTAGTAGAGGCATACTA 60.350 46.154 16.80 8.70 37.24 1.82
182 183 5.244189 CTAGTAGAGGCATACTAGGGACA 57.756 47.826 20.76 0.57 46.12 4.02
183 184 3.834938 AGTAGAGGCATACTAGGGACAC 58.165 50.000 0.00 0.00 34.21 3.67
184 185 1.693627 AGAGGCATACTAGGGACACG 58.306 55.000 0.00 0.00 0.00 4.49
185 186 1.063867 AGAGGCATACTAGGGACACGT 60.064 52.381 0.00 0.00 0.00 4.49
186 187 1.755380 GAGGCATACTAGGGACACGTT 59.245 52.381 0.00 0.00 0.00 3.99
187 188 2.954318 GAGGCATACTAGGGACACGTTA 59.046 50.000 0.00 0.00 0.00 3.18
188 189 3.573110 GAGGCATACTAGGGACACGTTAT 59.427 47.826 0.00 0.00 0.00 1.89
189 190 3.965347 AGGCATACTAGGGACACGTTATT 59.035 43.478 0.00 0.00 0.00 1.40
190 191 4.407945 AGGCATACTAGGGACACGTTATTT 59.592 41.667 0.00 0.00 0.00 1.40
191 192 4.510340 GGCATACTAGGGACACGTTATTTG 59.490 45.833 0.00 0.00 0.00 2.32
192 193 5.114081 GCATACTAGGGACACGTTATTTGT 58.886 41.667 0.00 0.00 0.00 2.83
193 194 5.583457 GCATACTAGGGACACGTTATTTGTT 59.417 40.000 0.00 0.00 0.00 2.83
194 195 6.093082 GCATACTAGGGACACGTTATTTGTTT 59.907 38.462 0.00 0.00 0.00 2.83
195 196 7.278424 GCATACTAGGGACACGTTATTTGTTTA 59.722 37.037 0.00 0.00 0.00 2.01
196 197 9.153721 CATACTAGGGACACGTTATTTGTTTAA 57.846 33.333 0.00 0.00 0.00 1.52
197 198 7.662604 ACTAGGGACACGTTATTTGTTTAAG 57.337 36.000 0.00 0.00 0.00 1.85
198 199 7.219322 ACTAGGGACACGTTATTTGTTTAAGT 58.781 34.615 0.00 0.00 0.00 2.24
199 200 8.367156 ACTAGGGACACGTTATTTGTTTAAGTA 58.633 33.333 0.00 0.00 0.00 2.24
200 201 9.374838 CTAGGGACACGTTATTTGTTTAAGTAT 57.625 33.333 0.00 0.00 0.00 2.12
201 202 8.625786 AGGGACACGTTATTTGTTTAAGTATT 57.374 30.769 0.00 0.00 0.00 1.89
202 203 8.724229 AGGGACACGTTATTTGTTTAAGTATTC 58.276 33.333 0.00 0.00 0.00 1.75
203 204 8.505625 GGGACACGTTATTTGTTTAAGTATTCA 58.494 33.333 0.00 0.00 0.00 2.57
204 205 9.321590 GGACACGTTATTTGTTTAAGTATTCAC 57.678 33.333 0.00 0.00 0.00 3.18
205 206 9.866936 GACACGTTATTTGTTTAAGTATTCACA 57.133 29.630 0.00 0.00 0.00 3.58
206 207 9.654417 ACACGTTATTTGTTTAAGTATTCACAC 57.346 29.630 0.00 0.00 0.00 3.82
207 208 9.653067 CACGTTATTTGTTTAAGTATTCACACA 57.347 29.630 0.00 0.00 0.00 3.72
223 224 9.485591 GTATTCACACATGTATTTAAGTTTCCG 57.514 33.333 0.00 0.00 0.00 4.30
224 225 7.731882 TTCACACATGTATTTAAGTTTCCGA 57.268 32.000 0.00 0.00 0.00 4.55
225 226 7.915293 TCACACATGTATTTAAGTTTCCGAT 57.085 32.000 0.00 0.00 0.00 4.18
226 227 7.970384 TCACACATGTATTTAAGTTTCCGATC 58.030 34.615 0.00 0.00 0.00 3.69
227 228 7.604545 TCACACATGTATTTAAGTTTCCGATCA 59.395 33.333 0.00 0.00 0.00 2.92
228 229 8.233868 CACACATGTATTTAAGTTTCCGATCAA 58.766 33.333 0.00 0.00 0.00 2.57
229 230 8.956426 ACACATGTATTTAAGTTTCCGATCAAT 58.044 29.630 0.00 0.00 0.00 2.57
241 242 8.786826 AGTTTCCGATCAATACAATTCTAACA 57.213 30.769 0.00 0.00 0.00 2.41
242 243 9.396022 AGTTTCCGATCAATACAATTCTAACAT 57.604 29.630 0.00 0.00 0.00 2.71
243 244 9.438291 GTTTCCGATCAATACAATTCTAACATG 57.562 33.333 0.00 0.00 0.00 3.21
244 245 8.956533 TTCCGATCAATACAATTCTAACATGA 57.043 30.769 0.00 0.00 0.00 3.07
245 246 8.956533 TCCGATCAATACAATTCTAACATGAA 57.043 30.769 0.00 0.00 0.00 2.57
246 247 9.559732 TCCGATCAATACAATTCTAACATGAAT 57.440 29.630 0.00 0.00 38.19 2.57
306 307 7.881775 AACAACTTTATTATTGCCTCTAGGG 57.118 36.000 0.00 0.00 35.18 3.53
319 320 4.982241 CCTCTAGGGCATATTTCCTTCA 57.018 45.455 0.00 0.00 34.75 3.02
328 329 4.646492 GGCATATTTCCTTCACAATGTCCT 59.354 41.667 0.00 0.00 0.00 3.85
333 334 3.685139 TCCTTCACAATGTCCTGAGAC 57.315 47.619 0.00 0.00 43.83 3.36
349 350 1.625818 GAGACTATACCTGGCCATGGG 59.374 57.143 20.97 16.10 0.00 4.00
484 485 0.809385 GCGTTTTAAGGAAGAGGCCC 59.191 55.000 0.00 0.00 0.00 5.80
485 486 1.613520 GCGTTTTAAGGAAGAGGCCCT 60.614 52.381 0.00 0.00 35.03 5.19
486 487 2.357075 CGTTTTAAGGAAGAGGCCCTC 58.643 52.381 1.26 1.26 32.57 4.30
487 488 2.027100 CGTTTTAAGGAAGAGGCCCTCT 60.027 50.000 7.68 7.68 43.37 3.69
531 533 2.281091 CCATTGATGGGCCTGGCT 59.719 61.111 19.68 0.00 44.31 4.75
657 659 9.639601 TGAGATACACTTAACAACTGACATTAG 57.360 33.333 0.00 0.00 0.00 1.73
696 698 7.840342 ATTGTCAACAACACAAAAGCAATAA 57.160 28.000 0.00 0.00 37.70 1.40
708 710 9.577110 ACACAAAAGCAATAATTGAGTGATATG 57.423 29.630 0.00 0.00 0.00 1.78
737 739 9.924650 CTTTCAATCTTCTCCTTTTTGATGAAT 57.075 29.630 0.00 0.00 0.00 2.57
820 822 9.777297 TTGAAATTTCTAAATTTGAGGAAAGGG 57.223 29.630 18.64 0.00 45.70 3.95
829 831 0.974383 TGAGGAAAGGGGTCGAGTTC 59.026 55.000 0.00 0.00 0.00 3.01
893 895 6.541754 GTCCGATTTATATCAGACGATTCG 57.458 41.667 4.14 4.14 30.73 3.34
896 898 7.425882 GTCCGATTTATATCAGACGATTCGTAG 59.574 40.741 12.40 8.17 41.37 3.51
898 900 7.413767 CCGATTTATATCAGACGATTCGTAGGA 60.414 40.741 12.40 12.62 41.37 2.94
1104 1106 2.771762 GGCCCTCCCATGCTCTCT 60.772 66.667 0.00 0.00 0.00 3.10
1628 1630 6.909357 GTGTTGCTGCAAGAGAAATATGATAC 59.091 38.462 16.53 0.00 34.07 2.24
1713 1715 2.284754 TGGCTGGCATTTCTGTGTTA 57.715 45.000 0.00 0.00 0.00 2.41
1771 1777 5.754778 AGTTTTTATGTCGGTAGCACAAAC 58.245 37.500 0.00 0.00 0.00 2.93
1772 1778 5.297278 AGTTTTTATGTCGGTAGCACAAACA 59.703 36.000 0.00 0.00 0.00 2.83
1773 1779 5.351233 TTTTATGTCGGTAGCACAAACAG 57.649 39.130 0.00 0.00 0.00 3.16
1843 1852 8.357290 TGGCAGTACTTTCTATTTAGTGTAGA 57.643 34.615 0.00 0.00 0.00 2.59
1860 1869 6.037098 AGTGTAGAGATTTGCTAAAGCTACG 58.963 40.000 3.26 0.00 37.23 3.51
1871 1880 3.243177 GCTAAAGCTACGTTTCTCATCCG 59.757 47.826 0.00 0.00 38.21 4.18
1874 1883 0.645868 GCTACGTTTCTCATCCGCAC 59.354 55.000 0.00 0.00 0.00 5.34
1879 1888 1.464608 CGTTTCTCATCCGCACAACAT 59.535 47.619 0.00 0.00 0.00 2.71
1904 1913 4.595762 AGCTTAAGTTGTAACCTCGACA 57.404 40.909 4.02 0.00 0.00 4.35
1923 1932 8.918961 CTCGACAAGGAAACATCCTATATATC 57.081 38.462 0.00 0.00 39.65 1.63
1924 1933 7.535997 TCGACAAGGAAACATCCTATATATCG 58.464 38.462 0.00 4.36 39.65 2.92
1925 1934 7.176165 TCGACAAGGAAACATCCTATATATCGT 59.824 37.037 0.00 0.00 39.65 3.73
1926 1935 8.456471 CGACAAGGAAACATCCTATATATCGTA 58.544 37.037 0.00 0.00 39.65 3.43
1927 1936 9.570488 GACAAGGAAACATCCTATATATCGTAC 57.430 37.037 0.00 0.00 39.65 3.67
1928 1937 9.310449 ACAAGGAAACATCCTATATATCGTACT 57.690 33.333 0.00 0.00 39.65 2.73
1948 1957 9.516314 TCGTACTATTATGAAATGACAGAACAG 57.484 33.333 0.00 0.00 0.00 3.16
1949 1958 9.302345 CGTACTATTATGAAATGACAGAACAGT 57.698 33.333 0.00 0.00 34.11 3.55
1952 1961 9.950496 ACTATTATGAAATGACAGAACAGTCTT 57.050 29.630 0.00 0.00 39.27 3.01
1956 1965 9.554395 TTATGAAATGACAGAACAGTCTTAACA 57.446 29.630 0.00 0.00 39.27 2.41
1957 1966 7.482654 TGAAATGACAGAACAGTCTTAACAG 57.517 36.000 0.00 0.00 39.27 3.16
1958 1967 7.047891 TGAAATGACAGAACAGTCTTAACAGT 58.952 34.615 0.00 0.00 39.27 3.55
1959 1968 7.552687 TGAAATGACAGAACAGTCTTAACAGTT 59.447 33.333 0.00 0.00 37.77 3.16
1960 1969 8.958119 AAATGACAGAACAGTCTTAACAGTTA 57.042 30.769 0.00 0.00 35.50 2.24
1961 1970 8.594881 AATGACAGAACAGTCTTAACAGTTAG 57.405 34.615 0.00 0.00 35.50 2.34
1962 1971 7.108841 TGACAGAACAGTCTTAACAGTTAGT 57.891 36.000 0.00 0.00 35.50 2.24
1963 1972 7.553334 TGACAGAACAGTCTTAACAGTTAGTT 58.447 34.615 0.00 0.00 40.41 2.24
1964 1973 7.705325 TGACAGAACAGTCTTAACAGTTAGTTC 59.295 37.037 11.73 11.73 39.17 3.01
1965 1974 6.985059 ACAGAACAGTCTTAACAGTTAGTTCC 59.015 38.462 14.41 3.22 35.50 3.62
1966 1975 6.984474 CAGAACAGTCTTAACAGTTAGTTCCA 59.016 38.462 14.41 0.00 35.50 3.53
1967 1976 7.169982 CAGAACAGTCTTAACAGTTAGTTCCAG 59.830 40.741 14.41 7.73 35.50 3.86
1968 1977 5.298347 ACAGTCTTAACAGTTAGTTCCAGC 58.702 41.667 0.00 0.00 41.64 4.85
1969 1978 5.070580 ACAGTCTTAACAGTTAGTTCCAGCT 59.929 40.000 0.00 0.00 41.64 4.24
1970 1979 6.267014 ACAGTCTTAACAGTTAGTTCCAGCTA 59.733 38.462 0.00 0.00 41.64 3.32
1971 1980 7.152645 CAGTCTTAACAGTTAGTTCCAGCTAA 58.847 38.462 0.00 0.00 41.64 3.09
1972 1981 7.656137 CAGTCTTAACAGTTAGTTCCAGCTAAA 59.344 37.037 0.00 0.00 41.64 1.85
1973 1982 7.656542 AGTCTTAACAGTTAGTTCCAGCTAAAC 59.343 37.037 3.52 3.52 41.64 2.01
1974 1983 6.932960 TCTTAACAGTTAGTTCCAGCTAAACC 59.067 38.462 7.37 0.00 41.64 3.27
1975 1984 4.976540 ACAGTTAGTTCCAGCTAAACCT 57.023 40.909 7.37 0.00 33.34 3.50
1976 1985 4.895961 ACAGTTAGTTCCAGCTAAACCTC 58.104 43.478 7.37 0.74 33.34 3.85
1977 1986 4.593634 ACAGTTAGTTCCAGCTAAACCTCT 59.406 41.667 7.37 2.57 33.34 3.69
1978 1987 5.071923 ACAGTTAGTTCCAGCTAAACCTCTT 59.928 40.000 7.37 0.00 33.34 2.85
1979 1988 5.409826 CAGTTAGTTCCAGCTAAACCTCTTG 59.590 44.000 7.37 0.50 33.34 3.02
1980 1989 5.071923 AGTTAGTTCCAGCTAAACCTCTTGT 59.928 40.000 7.37 0.00 33.34 3.16
1981 1990 4.009370 AGTTCCAGCTAAACCTCTTGTC 57.991 45.455 7.37 0.00 0.00 3.18
1982 1991 3.648545 AGTTCCAGCTAAACCTCTTGTCT 59.351 43.478 7.37 0.00 0.00 3.41
1983 1992 3.685139 TCCAGCTAAACCTCTTGTCTG 57.315 47.619 0.00 0.00 0.00 3.51
1984 1993 3.239449 TCCAGCTAAACCTCTTGTCTGA 58.761 45.455 0.00 0.00 0.00 3.27
1985 1994 3.646162 TCCAGCTAAACCTCTTGTCTGAA 59.354 43.478 0.00 0.00 0.00 3.02
1986 1995 3.999663 CCAGCTAAACCTCTTGTCTGAAG 59.000 47.826 0.00 0.00 0.00 3.02
1987 1996 3.999663 CAGCTAAACCTCTTGTCTGAAGG 59.000 47.826 0.00 0.00 0.00 3.46
1988 1997 2.744741 GCTAAACCTCTTGTCTGAAGGC 59.255 50.000 0.00 0.00 0.00 4.35
1989 1998 1.884235 AAACCTCTTGTCTGAAGGCG 58.116 50.000 0.00 0.00 0.00 5.52
1990 1999 1.048601 AACCTCTTGTCTGAAGGCGA 58.951 50.000 0.00 0.00 0.00 5.54
1991 2000 0.318762 ACCTCTTGTCTGAAGGCGAC 59.681 55.000 0.00 0.00 0.00 5.19
1992 2001 0.318441 CCTCTTGTCTGAAGGCGACA 59.682 55.000 0.00 0.00 39.45 4.35
1993 2002 1.066573 CCTCTTGTCTGAAGGCGACAT 60.067 52.381 0.00 0.00 40.70 3.06
1994 2003 2.613977 CCTCTTGTCTGAAGGCGACATT 60.614 50.000 0.00 0.00 40.70 2.71
1995 2004 3.070018 CTCTTGTCTGAAGGCGACATTT 58.930 45.455 0.00 0.00 40.70 2.32
1996 2005 4.245660 CTCTTGTCTGAAGGCGACATTTA 58.754 43.478 0.00 0.00 40.70 1.40
1997 2006 4.637276 TCTTGTCTGAAGGCGACATTTAA 58.363 39.130 0.00 0.00 40.70 1.52
1998 2007 5.245531 TCTTGTCTGAAGGCGACATTTAAT 58.754 37.500 0.00 0.00 40.70 1.40
1999 2008 5.351465 TCTTGTCTGAAGGCGACATTTAATC 59.649 40.000 0.00 0.00 40.70 1.75
2000 2009 4.832248 TGTCTGAAGGCGACATTTAATCT 58.168 39.130 0.00 0.00 36.54 2.40
2001 2010 5.245531 TGTCTGAAGGCGACATTTAATCTT 58.754 37.500 0.00 0.00 36.54 2.40
2002 2011 5.122239 TGTCTGAAGGCGACATTTAATCTTG 59.878 40.000 0.00 0.00 36.54 3.02
2003 2012 5.122396 GTCTGAAGGCGACATTTAATCTTGT 59.878 40.000 0.00 0.00 0.00 3.16
2004 2013 5.122239 TCTGAAGGCGACATTTAATCTTGTG 59.878 40.000 0.00 0.00 0.00 3.33
2005 2014 4.155826 TGAAGGCGACATTTAATCTTGTGG 59.844 41.667 0.00 0.00 0.00 4.17
2006 2015 3.016736 AGGCGACATTTAATCTTGTGGG 58.983 45.455 0.00 0.00 0.00 4.61
2007 2016 2.479560 GGCGACATTTAATCTTGTGGGC 60.480 50.000 0.00 6.55 39.25 5.36
2008 2017 2.423538 GCGACATTTAATCTTGTGGGCT 59.576 45.455 0.00 0.00 0.00 5.19
2009 2018 3.731867 GCGACATTTAATCTTGTGGGCTG 60.732 47.826 0.00 0.00 0.00 4.85
2037 2046 3.137544 TCTTGTGAACCCAAGTGTATGGT 59.862 43.478 0.00 0.00 42.01 3.55
2070 2079 1.207089 CAACCTCATTCCCGAGCAGTA 59.793 52.381 0.00 0.00 0.00 2.74
2072 2081 2.119495 ACCTCATTCCCGAGCAGTAAT 58.881 47.619 0.00 0.00 0.00 1.89
2159 2168 7.284034 GTGTTGGTTCCAGATCATTCATATTCT 59.716 37.037 0.00 0.00 0.00 2.40
2301 2311 6.790232 ATTGGGTATTAGATTTGGGTGTTG 57.210 37.500 0.00 0.00 0.00 3.33
2346 2356 1.623811 AGGTTCAGCTATTGGTCGTGT 59.376 47.619 0.00 0.00 0.00 4.49
2347 2357 2.038557 AGGTTCAGCTATTGGTCGTGTT 59.961 45.455 0.00 0.00 0.00 3.32
2348 2358 2.159627 GGTTCAGCTATTGGTCGTGTTG 59.840 50.000 0.00 0.00 0.00 3.33
2349 2359 2.093306 TCAGCTATTGGTCGTGTTGG 57.907 50.000 0.00 0.00 0.00 3.77
2350 2360 1.621317 TCAGCTATTGGTCGTGTTGGA 59.379 47.619 0.00 0.00 0.00 3.53
2351 2361 2.037902 TCAGCTATTGGTCGTGTTGGAA 59.962 45.455 0.00 0.00 0.00 3.53
2352 2362 2.416547 CAGCTATTGGTCGTGTTGGAAG 59.583 50.000 0.00 0.00 0.00 3.46
2353 2363 2.038557 AGCTATTGGTCGTGTTGGAAGT 59.961 45.455 0.00 0.00 0.00 3.01
2354 2364 2.159627 GCTATTGGTCGTGTTGGAAGTG 59.840 50.000 0.00 0.00 0.00 3.16
2355 2365 0.951558 ATTGGTCGTGTTGGAAGTGC 59.048 50.000 0.00 0.00 0.00 4.40
2356 2366 1.433053 TTGGTCGTGTTGGAAGTGCG 61.433 55.000 0.00 0.00 0.00 5.34
2357 2367 1.593209 GGTCGTGTTGGAAGTGCGA 60.593 57.895 0.00 0.00 0.00 5.10
2358 2368 1.557443 GGTCGTGTTGGAAGTGCGAG 61.557 60.000 0.00 0.00 32.07 5.03
2359 2369 0.596600 GTCGTGTTGGAAGTGCGAGA 60.597 55.000 0.00 0.00 32.07 4.04
2360 2370 0.103390 TCGTGTTGGAAGTGCGAGAA 59.897 50.000 0.00 0.00 0.00 2.87
2361 2371 0.934496 CGTGTTGGAAGTGCGAGAAA 59.066 50.000 0.00 0.00 0.00 2.52
2362 2372 1.329292 CGTGTTGGAAGTGCGAGAAAA 59.671 47.619 0.00 0.00 0.00 2.29
2363 2373 2.716398 GTGTTGGAAGTGCGAGAAAAC 58.284 47.619 0.00 0.00 0.00 2.43
2364 2374 2.096819 GTGTTGGAAGTGCGAGAAAACA 59.903 45.455 0.00 0.00 0.00 2.83
2365 2375 2.750166 TGTTGGAAGTGCGAGAAAACAA 59.250 40.909 0.00 0.00 0.00 2.83
2366 2376 3.105937 GTTGGAAGTGCGAGAAAACAAC 58.894 45.455 0.00 0.00 0.00 3.32
2367 2377 2.360844 TGGAAGTGCGAGAAAACAACA 58.639 42.857 0.00 0.00 0.00 3.33
2368 2378 2.096819 TGGAAGTGCGAGAAAACAACAC 59.903 45.455 0.00 0.00 0.00 3.32
2369 2379 2.540973 GGAAGTGCGAGAAAACAACACC 60.541 50.000 0.00 0.00 31.58 4.16
2370 2380 1.021968 AGTGCGAGAAAACAACACCC 58.978 50.000 0.00 0.00 31.58 4.61
2371 2381 0.736053 GTGCGAGAAAACAACACCCA 59.264 50.000 0.00 0.00 0.00 4.51
2372 2382 0.736053 TGCGAGAAAACAACACCCAC 59.264 50.000 0.00 0.00 0.00 4.61
2373 2383 0.030235 GCGAGAAAACAACACCCACC 59.970 55.000 0.00 0.00 0.00 4.61
2374 2384 0.666374 CGAGAAAACAACACCCACCC 59.334 55.000 0.00 0.00 0.00 4.61
2375 2385 1.037493 GAGAAAACAACACCCACCCC 58.963 55.000 0.00 0.00 0.00 4.95
2376 2386 0.397957 AGAAAACAACACCCACCCCC 60.398 55.000 0.00 0.00 0.00 5.40
2377 2387 1.740332 GAAAACAACACCCACCCCCG 61.740 60.000 0.00 0.00 0.00 5.73
2378 2388 4.906537 AACAACACCCACCCCCGC 62.907 66.667 0.00 0.00 0.00 6.13
2398 2408 4.323477 CTGGCGACACGGGGGAAA 62.323 66.667 0.00 0.00 35.60 3.13
2399 2409 4.629523 TGGCGACACGGGGGAAAC 62.630 66.667 0.00 0.00 33.40 2.78
2434 2444 4.452733 CCCCTTCGACTCCGCCAC 62.453 72.222 0.00 0.00 35.37 5.01
2435 2445 4.796231 CCCTTCGACTCCGCCACG 62.796 72.222 0.00 0.00 35.37 4.94
2516 2526 2.890371 CGGGTCGATTCCGTTCCT 59.110 61.111 18.22 0.00 42.33 3.36
2517 2527 1.518572 CGGGTCGATTCCGTTCCTG 60.519 63.158 18.22 1.72 42.33 3.86
2518 2528 1.814169 GGGTCGATTCCGTTCCTGC 60.814 63.158 0.00 0.00 37.05 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.804743 CAGTTTATTGCTATTGCTTTCTTCATG 58.195 33.333 0.00 0.00 40.48 3.07
1 2 8.742777 TCAGTTTATTGCTATTGCTTTCTTCAT 58.257 29.630 0.00 0.00 40.48 2.57
2 3 8.109705 TCAGTTTATTGCTATTGCTTTCTTCA 57.890 30.769 0.00 0.00 40.48 3.02
3 4 8.854312 GTTCAGTTTATTGCTATTGCTTTCTTC 58.146 33.333 0.00 0.00 40.48 2.87
4 5 7.814587 GGTTCAGTTTATTGCTATTGCTTTCTT 59.185 33.333 0.00 0.00 40.48 2.52
5 6 7.039784 TGGTTCAGTTTATTGCTATTGCTTTCT 60.040 33.333 0.00 0.00 40.48 2.52
6 7 7.090173 TGGTTCAGTTTATTGCTATTGCTTTC 58.910 34.615 0.00 0.00 40.48 2.62
7 8 6.991938 TGGTTCAGTTTATTGCTATTGCTTT 58.008 32.000 0.00 0.00 40.48 3.51
8 9 6.588719 TGGTTCAGTTTATTGCTATTGCTT 57.411 33.333 0.00 0.00 40.48 3.91
9 10 6.377996 TGATGGTTCAGTTTATTGCTATTGCT 59.622 34.615 0.00 0.00 40.48 3.91
10 11 6.563422 TGATGGTTCAGTTTATTGCTATTGC 58.437 36.000 0.00 0.00 40.20 3.56
14 15 8.352201 GCATAATGATGGTTCAGTTTATTGCTA 58.648 33.333 0.00 0.00 34.73 3.49
15 16 7.069085 AGCATAATGATGGTTCAGTTTATTGCT 59.931 33.333 0.00 0.00 40.99 3.91
16 17 7.205297 AGCATAATGATGGTTCAGTTTATTGC 58.795 34.615 0.00 0.00 40.99 3.56
19 20 8.571336 GCTTAGCATAATGATGGTTCAGTTTAT 58.429 33.333 0.00 0.00 40.99 1.40
20 21 7.775093 AGCTTAGCATAATGATGGTTCAGTTTA 59.225 33.333 7.07 0.00 40.99 2.01
21 22 6.604795 AGCTTAGCATAATGATGGTTCAGTTT 59.395 34.615 7.07 0.00 40.99 2.66
22 23 6.125029 AGCTTAGCATAATGATGGTTCAGTT 58.875 36.000 7.07 0.00 40.99 3.16
23 24 5.688807 AGCTTAGCATAATGATGGTTCAGT 58.311 37.500 7.07 0.00 40.99 3.41
24 25 7.570140 CGTTAGCTTAGCATAATGATGGTTCAG 60.570 40.741 7.07 0.00 40.99 3.02
25 26 6.202762 CGTTAGCTTAGCATAATGATGGTTCA 59.797 38.462 7.07 0.00 40.99 3.18
26 27 6.423905 TCGTTAGCTTAGCATAATGATGGTTC 59.576 38.462 7.07 0.00 40.99 3.62
27 28 6.288294 TCGTTAGCTTAGCATAATGATGGTT 58.712 36.000 7.07 0.00 40.99 3.67
28 29 5.853936 TCGTTAGCTTAGCATAATGATGGT 58.146 37.500 7.07 0.00 45.64 3.55
29 30 5.928839 ACTCGTTAGCTTAGCATAATGATGG 59.071 40.000 7.07 5.51 33.26 3.51
30 31 6.422100 ACACTCGTTAGCTTAGCATAATGATG 59.578 38.462 7.07 13.21 36.02 3.07
31 32 6.422100 CACACTCGTTAGCTTAGCATAATGAT 59.578 38.462 7.07 2.32 0.00 2.45
32 33 5.748630 CACACTCGTTAGCTTAGCATAATGA 59.251 40.000 7.07 11.39 0.00 2.57
33 34 5.520288 ACACACTCGTTAGCTTAGCATAATG 59.480 40.000 7.07 7.92 0.00 1.90
34 35 5.661458 ACACACTCGTTAGCTTAGCATAAT 58.339 37.500 7.07 0.00 0.00 1.28
35 36 5.068234 ACACACTCGTTAGCTTAGCATAA 57.932 39.130 7.07 0.00 0.00 1.90
36 37 4.398358 AGACACACTCGTTAGCTTAGCATA 59.602 41.667 7.07 0.00 0.00 3.14
37 38 3.193691 AGACACACTCGTTAGCTTAGCAT 59.806 43.478 7.07 0.00 0.00 3.79
38 39 2.557056 AGACACACTCGTTAGCTTAGCA 59.443 45.455 7.07 0.00 0.00 3.49
39 40 3.219052 AGACACACTCGTTAGCTTAGC 57.781 47.619 0.00 0.00 0.00 3.09
40 41 4.547532 ACAAGACACACTCGTTAGCTTAG 58.452 43.478 0.00 0.00 0.00 2.18
41 42 4.543692 GACAAGACACACTCGTTAGCTTA 58.456 43.478 0.00 0.00 0.00 3.09
42 43 3.381949 GACAAGACACACTCGTTAGCTT 58.618 45.455 0.00 0.00 0.00 3.74
43 44 2.288273 GGACAAGACACACTCGTTAGCT 60.288 50.000 0.00 0.00 0.00 3.32
44 45 2.059541 GGACAAGACACACTCGTTAGC 58.940 52.381 0.00 0.00 0.00 3.09
45 46 3.364889 TGGACAAGACACACTCGTTAG 57.635 47.619 0.00 0.00 0.00 2.34
46 47 3.319689 TGATGGACAAGACACACTCGTTA 59.680 43.478 0.00 0.00 0.00 3.18
47 48 2.102420 TGATGGACAAGACACACTCGTT 59.898 45.455 0.00 0.00 0.00 3.85
48 49 1.686587 TGATGGACAAGACACACTCGT 59.313 47.619 0.00 0.00 0.00 4.18
49 50 2.061773 GTGATGGACAAGACACACTCG 58.938 52.381 0.00 0.00 34.05 4.18
50 51 3.111853 TGTGATGGACAAGACACACTC 57.888 47.619 0.00 0.00 38.14 3.51
51 52 3.071457 TGATGTGATGGACAAGACACACT 59.929 43.478 0.00 0.00 44.08 3.55
52 53 3.402110 TGATGTGATGGACAAGACACAC 58.598 45.455 0.00 0.00 44.08 3.82
53 54 3.767902 TGATGTGATGGACAAGACACA 57.232 42.857 0.00 0.00 45.06 3.72
54 55 4.940046 AGAATGATGTGATGGACAAGACAC 59.060 41.667 0.00 0.00 38.36 3.67
55 56 5.169992 AGAATGATGTGATGGACAAGACA 57.830 39.130 0.00 0.00 38.36 3.41
56 57 4.574013 GGAGAATGATGTGATGGACAAGAC 59.426 45.833 0.00 0.00 38.36 3.01
57 58 4.472470 AGGAGAATGATGTGATGGACAAGA 59.528 41.667 0.00 0.00 38.36 3.02
58 59 4.778579 AGGAGAATGATGTGATGGACAAG 58.221 43.478 0.00 0.00 38.36 3.16
59 60 4.849813 AGGAGAATGATGTGATGGACAA 57.150 40.909 0.00 0.00 38.36 3.18
60 61 5.955961 TTAGGAGAATGATGTGATGGACA 57.044 39.130 0.00 0.00 39.53 4.02
61 62 6.528321 TCATTAGGAGAATGATGTGATGGAC 58.472 40.000 0.00 0.00 32.21 4.02
62 63 6.752285 TCATTAGGAGAATGATGTGATGGA 57.248 37.500 0.00 0.00 32.21 3.41
70 71 6.575847 CGGGATCACATCATTAGGAGAATGAT 60.576 42.308 6.90 6.90 45.40 2.45
71 72 5.279657 CGGGATCACATCATTAGGAGAATGA 60.280 44.000 0.00 2.66 40.50 2.57
72 73 4.934001 CGGGATCACATCATTAGGAGAATG 59.066 45.833 0.00 0.00 0.00 2.67
73 74 4.594920 ACGGGATCACATCATTAGGAGAAT 59.405 41.667 0.00 0.00 0.00 2.40
74 75 3.967326 ACGGGATCACATCATTAGGAGAA 59.033 43.478 0.00 0.00 0.00 2.87
75 76 3.576861 ACGGGATCACATCATTAGGAGA 58.423 45.455 0.00 0.00 0.00 3.71
76 77 4.342862 AACGGGATCACATCATTAGGAG 57.657 45.455 0.00 0.00 0.00 3.69
77 78 5.542251 TGATAACGGGATCACATCATTAGGA 59.458 40.000 0.00 0.00 30.75 2.94
78 79 5.793817 TGATAACGGGATCACATCATTAGG 58.206 41.667 0.00 0.00 30.75 2.69
79 80 7.576236 GTTTGATAACGGGATCACATCATTAG 58.424 38.462 0.00 0.00 35.56 1.73
80 81 7.490962 GTTTGATAACGGGATCACATCATTA 57.509 36.000 0.00 0.00 35.56 1.90
81 82 6.377327 GTTTGATAACGGGATCACATCATT 57.623 37.500 0.00 0.00 35.56 2.57
106 107 7.871853 GTTTTCTAACCATAGACATGTGTTGT 58.128 34.615 1.15 0.00 42.79 3.32
122 123 9.841880 GATCAAAGATGGTTAAGGTTTTCTAAC 57.158 33.333 0.00 0.00 0.00 2.34
123 124 9.581289 TGATCAAAGATGGTTAAGGTTTTCTAA 57.419 29.630 0.00 0.00 0.00 2.10
124 125 9.581289 TTGATCAAAGATGGTTAAGGTTTTCTA 57.419 29.630 5.45 0.00 0.00 2.10
125 126 8.360390 GTTGATCAAAGATGGTTAAGGTTTTCT 58.640 33.333 10.35 0.00 0.00 2.52
126 127 7.326063 CGTTGATCAAAGATGGTTAAGGTTTTC 59.674 37.037 15.34 0.00 0.00 2.29
127 128 7.013846 TCGTTGATCAAAGATGGTTAAGGTTTT 59.986 33.333 18.50 0.00 0.00 2.43
128 129 6.488683 TCGTTGATCAAAGATGGTTAAGGTTT 59.511 34.615 18.50 0.00 0.00 3.27
129 130 6.001460 TCGTTGATCAAAGATGGTTAAGGTT 58.999 36.000 18.50 0.00 0.00 3.50
130 131 5.556915 TCGTTGATCAAAGATGGTTAAGGT 58.443 37.500 18.50 0.00 0.00 3.50
131 132 5.447818 GCTCGTTGATCAAAGATGGTTAAGG 60.448 44.000 21.83 10.54 0.00 2.69
132 133 5.352569 AGCTCGTTGATCAAAGATGGTTAAG 59.647 40.000 21.83 11.16 0.00 1.85
133 134 5.245531 AGCTCGTTGATCAAAGATGGTTAA 58.754 37.500 21.83 1.24 0.00 2.01
134 135 4.832248 AGCTCGTTGATCAAAGATGGTTA 58.168 39.130 21.83 1.90 0.00 2.85
135 136 3.679389 AGCTCGTTGATCAAAGATGGTT 58.321 40.909 21.83 8.86 0.00 3.67
136 137 3.340814 AGCTCGTTGATCAAAGATGGT 57.659 42.857 21.83 17.63 0.00 3.55
137 138 4.437239 ACTAGCTCGTTGATCAAAGATGG 58.563 43.478 21.83 14.18 0.00 3.51
138 139 5.347342 AGACTAGCTCGTTGATCAAAGATG 58.653 41.667 21.83 16.63 0.00 2.90
139 140 5.590530 AGACTAGCTCGTTGATCAAAGAT 57.409 39.130 21.83 12.82 0.00 2.40
140 141 5.648526 ACTAGACTAGCTCGTTGATCAAAGA 59.351 40.000 20.62 20.62 0.00 2.52
141 142 5.885881 ACTAGACTAGCTCGTTGATCAAAG 58.114 41.667 10.35 12.64 0.00 2.77
142 143 5.899120 ACTAGACTAGCTCGTTGATCAAA 57.101 39.130 10.35 0.00 0.00 2.69
143 144 6.346896 TCTACTAGACTAGCTCGTTGATCAA 58.653 40.000 9.52 3.38 0.00 2.57
144 145 5.915175 TCTACTAGACTAGCTCGTTGATCA 58.085 41.667 9.52 0.00 0.00 2.92
145 146 5.407387 CCTCTACTAGACTAGCTCGTTGATC 59.593 48.000 9.52 0.00 0.00 2.92
146 147 5.302360 CCTCTACTAGACTAGCTCGTTGAT 58.698 45.833 9.52 0.00 0.00 2.57
147 148 4.695396 CCTCTACTAGACTAGCTCGTTGA 58.305 47.826 9.52 0.00 0.00 3.18
148 149 3.249080 GCCTCTACTAGACTAGCTCGTTG 59.751 52.174 9.52 0.00 0.00 4.10
149 150 3.118334 TGCCTCTACTAGACTAGCTCGTT 60.118 47.826 9.52 0.00 0.00 3.85
150 151 2.435069 TGCCTCTACTAGACTAGCTCGT 59.565 50.000 9.52 0.00 0.00 4.18
151 152 3.114668 TGCCTCTACTAGACTAGCTCG 57.885 52.381 9.52 0.00 0.00 5.03
152 153 5.801380 AGTATGCCTCTACTAGACTAGCTC 58.199 45.833 9.52 0.00 30.16 4.09
153 154 5.836024 AGTATGCCTCTACTAGACTAGCT 57.164 43.478 9.52 0.00 30.16 3.32
160 161 5.005094 GTGTCCCTAGTATGCCTCTACTAG 58.995 50.000 14.04 14.04 45.68 2.57
161 162 4.504514 CGTGTCCCTAGTATGCCTCTACTA 60.505 50.000 0.00 0.00 33.96 1.82
162 163 3.748027 CGTGTCCCTAGTATGCCTCTACT 60.748 52.174 0.00 0.00 36.04 2.57
163 164 2.553172 CGTGTCCCTAGTATGCCTCTAC 59.447 54.545 0.00 0.00 0.00 2.59
164 165 2.174210 ACGTGTCCCTAGTATGCCTCTA 59.826 50.000 0.00 0.00 0.00 2.43
165 166 1.063867 ACGTGTCCCTAGTATGCCTCT 60.064 52.381 0.00 0.00 0.00 3.69
166 167 1.400737 ACGTGTCCCTAGTATGCCTC 58.599 55.000 0.00 0.00 0.00 4.70
167 168 1.861982 AACGTGTCCCTAGTATGCCT 58.138 50.000 0.00 0.00 0.00 4.75
168 169 4.332428 AATAACGTGTCCCTAGTATGCC 57.668 45.455 0.00 0.00 0.00 4.40
169 170 5.114081 ACAAATAACGTGTCCCTAGTATGC 58.886 41.667 0.00 0.00 0.00 3.14
170 171 7.605410 AAACAAATAACGTGTCCCTAGTATG 57.395 36.000 0.00 0.00 0.00 2.39
171 172 9.374838 CTTAAACAAATAACGTGTCCCTAGTAT 57.625 33.333 0.00 0.00 0.00 2.12
172 173 8.367156 ACTTAAACAAATAACGTGTCCCTAGTA 58.633 33.333 0.00 0.00 0.00 1.82
173 174 7.219322 ACTTAAACAAATAACGTGTCCCTAGT 58.781 34.615 0.00 0.00 0.00 2.57
174 175 7.662604 ACTTAAACAAATAACGTGTCCCTAG 57.337 36.000 0.00 0.00 0.00 3.02
175 176 9.723601 AATACTTAAACAAATAACGTGTCCCTA 57.276 29.630 0.00 0.00 0.00 3.53
176 177 8.625786 AATACTTAAACAAATAACGTGTCCCT 57.374 30.769 0.00 0.00 0.00 4.20
177 178 8.505625 TGAATACTTAAACAAATAACGTGTCCC 58.494 33.333 0.00 0.00 0.00 4.46
178 179 9.321590 GTGAATACTTAAACAAATAACGTGTCC 57.678 33.333 0.00 0.00 0.00 4.02
179 180 9.866936 TGTGAATACTTAAACAAATAACGTGTC 57.133 29.630 0.00 0.00 0.00 3.67
180 181 9.654417 GTGTGAATACTTAAACAAATAACGTGT 57.346 29.630 0.00 0.00 0.00 4.49
181 182 9.653067 TGTGTGAATACTTAAACAAATAACGTG 57.347 29.630 0.00 0.00 0.00 4.49
197 198 9.485591 CGGAAACTTAAATACATGTGTGAATAC 57.514 33.333 9.11 0.00 0.00 1.89
198 199 9.438228 TCGGAAACTTAAATACATGTGTGAATA 57.562 29.630 9.11 0.00 0.00 1.75
199 200 8.330466 TCGGAAACTTAAATACATGTGTGAAT 57.670 30.769 9.11 0.00 0.00 2.57
200 201 7.731882 TCGGAAACTTAAATACATGTGTGAA 57.268 32.000 9.11 0.00 0.00 3.18
201 202 7.604545 TGATCGGAAACTTAAATACATGTGTGA 59.395 33.333 9.11 0.00 0.00 3.58
202 203 7.747888 TGATCGGAAACTTAAATACATGTGTG 58.252 34.615 9.11 0.00 0.00 3.82
203 204 7.915293 TGATCGGAAACTTAAATACATGTGT 57.085 32.000 9.11 0.00 0.00 3.72
215 216 9.226606 TGTTAGAATTGTATTGATCGGAAACTT 57.773 29.630 0.00 0.00 0.00 2.66
216 217 8.786826 TGTTAGAATTGTATTGATCGGAAACT 57.213 30.769 0.00 0.00 0.00 2.66
217 218 9.438291 CATGTTAGAATTGTATTGATCGGAAAC 57.562 33.333 0.00 0.00 0.00 2.78
218 219 9.389755 TCATGTTAGAATTGTATTGATCGGAAA 57.610 29.630 0.00 0.00 0.00 3.13
219 220 8.956533 TCATGTTAGAATTGTATTGATCGGAA 57.043 30.769 0.00 0.00 0.00 4.30
220 221 8.956533 TTCATGTTAGAATTGTATTGATCGGA 57.043 30.769 0.00 0.00 0.00 4.55
280 281 9.574516 CCCTAGAGGCAATAATAAAGTTGTTAT 57.425 33.333 0.00 0.00 0.00 1.89
281 282 8.974060 CCCTAGAGGCAATAATAAAGTTGTTA 57.026 34.615 0.00 0.00 0.00 2.41
282 283 7.881775 CCCTAGAGGCAATAATAAAGTTGTT 57.118 36.000 0.00 0.00 0.00 2.83
298 299 4.103153 TGTGAAGGAAATATGCCCTAGAGG 59.897 45.833 0.00 0.00 39.47 3.69
299 300 5.296151 TGTGAAGGAAATATGCCCTAGAG 57.704 43.478 0.00 0.00 31.36 2.43
300 301 5.708736 TTGTGAAGGAAATATGCCCTAGA 57.291 39.130 0.00 0.00 31.36 2.43
301 302 5.829924 ACATTGTGAAGGAAATATGCCCTAG 59.170 40.000 0.00 0.00 31.36 3.02
302 303 5.765510 ACATTGTGAAGGAAATATGCCCTA 58.234 37.500 0.00 0.00 31.36 3.53
303 304 4.613437 ACATTGTGAAGGAAATATGCCCT 58.387 39.130 0.00 0.00 0.00 5.19
304 305 4.202151 GGACATTGTGAAGGAAATATGCCC 60.202 45.833 0.00 0.00 0.00 5.36
305 306 4.646492 AGGACATTGTGAAGGAAATATGCC 59.354 41.667 0.00 0.00 0.00 4.40
306 307 5.357878 TCAGGACATTGTGAAGGAAATATGC 59.642 40.000 0.00 0.00 0.00 3.14
307 308 6.825213 TCTCAGGACATTGTGAAGGAAATATG 59.175 38.462 0.00 0.00 0.00 1.78
308 309 6.825721 GTCTCAGGACATTGTGAAGGAAATAT 59.174 38.462 0.00 0.00 41.75 1.28
309 310 6.013379 AGTCTCAGGACATTGTGAAGGAAATA 60.013 38.462 0.00 0.00 44.36 1.40
310 311 5.006386 GTCTCAGGACATTGTGAAGGAAAT 58.994 41.667 0.00 0.00 41.75 2.17
311 312 4.103153 AGTCTCAGGACATTGTGAAGGAAA 59.897 41.667 0.00 0.00 44.36 3.13
312 313 3.648067 AGTCTCAGGACATTGTGAAGGAA 59.352 43.478 0.00 0.00 44.36 3.36
313 314 3.242867 AGTCTCAGGACATTGTGAAGGA 58.757 45.455 0.00 0.00 44.36 3.36
314 315 3.692257 AGTCTCAGGACATTGTGAAGG 57.308 47.619 0.00 0.00 44.36 3.46
315 316 6.097554 AGGTATAGTCTCAGGACATTGTGAAG 59.902 42.308 0.00 0.00 44.36 3.02
316 317 5.958380 AGGTATAGTCTCAGGACATTGTGAA 59.042 40.000 0.00 0.00 44.36 3.18
317 318 5.360999 CAGGTATAGTCTCAGGACATTGTGA 59.639 44.000 0.00 0.00 44.36 3.58
318 319 5.452496 CCAGGTATAGTCTCAGGACATTGTG 60.452 48.000 0.00 0.00 44.36 3.33
319 320 4.651503 CCAGGTATAGTCTCAGGACATTGT 59.348 45.833 0.00 0.00 44.36 2.71
328 329 2.329267 CCATGGCCAGGTATAGTCTCA 58.671 52.381 17.55 0.00 0.00 3.27
333 334 2.489073 GGTTTCCCATGGCCAGGTATAG 60.489 54.545 17.55 0.00 0.00 1.31
442 443 1.341913 TATGCTAAGCCCAAGCCCGA 61.342 55.000 0.60 0.00 41.25 5.14
447 448 1.802960 CGCAGATATGCTAAGCCCAAG 59.197 52.381 11.09 0.00 0.00 3.61
531 533 1.305213 GCCCAGATTTCAGGCCCAA 60.305 57.895 0.00 0.00 41.00 4.12
565 567 1.749258 CGGCAGAAAACCTAGGCCC 60.749 63.158 9.30 0.00 41.58 5.80
657 659 8.831550 GTTGTTGACAATAGGATTAGGAAGATC 58.168 37.037 0.00 0.00 38.24 2.75
662 664 6.774673 TGTGTTGTTGACAATAGGATTAGGA 58.225 36.000 0.00 0.00 40.65 2.94
708 710 6.507023 TCAAAAAGGAGAAGATTGAAAGTGC 58.493 36.000 0.00 0.00 0.00 4.40
797 799 8.275187 ACCCCTTTCCTCAAATTTAGAAATTT 57.725 30.769 7.07 7.07 46.42 1.82
829 831 3.726517 CAGAAGCCAACGCCGTGG 61.727 66.667 0.00 0.00 42.05 4.94
889 891 2.104331 CCACGCGCTCCTACGAAT 59.896 61.111 5.73 0.00 34.06 3.34
1097 1099 1.608717 GGAGCGGGAGAAAGAGAGCA 61.609 60.000 0.00 0.00 0.00 4.26
1104 1106 1.676678 CGGAGATGGAGCGGGAGAAA 61.677 60.000 0.00 0.00 0.00 2.52
1248 1250 0.976641 TCGCCACTTCATCTGAGGTT 59.023 50.000 0.00 0.00 31.60 3.50
1628 1630 0.453282 CAATTGTCTGCGGAACAGCG 60.453 55.000 0.00 0.00 46.76 5.18
1660 1662 2.434185 ACCGAATCGCACGCACAT 60.434 55.556 0.00 0.00 0.00 3.21
1713 1715 6.474630 TCTCTTCTCGGAGTAAGAGTAGTTT 58.525 40.000 27.40 0.00 43.65 2.66
1797 1806 5.181245 GCCAAGTGCAAGTAAGTTTATCAGA 59.819 40.000 0.00 0.00 40.77 3.27
1843 1852 5.932303 TGAGAAACGTAGCTTTAGCAAATCT 59.068 36.000 4.33 0.00 45.16 2.40
1860 1869 3.559238 AATGTTGTGCGGATGAGAAAC 57.441 42.857 0.00 0.00 0.00 2.78
1871 1880 8.476925 GTTACAACTTAAGCTAAAATGTTGTGC 58.523 33.333 23.75 17.23 44.72 4.57
1874 1883 9.394477 GAGGTTACAACTTAAGCTAAAATGTTG 57.606 33.333 1.29 15.20 40.11 3.33
1879 1888 6.985645 TGTCGAGGTTACAACTTAAGCTAAAA 59.014 34.615 1.29 0.00 35.66 1.52
1922 1931 9.516314 CTGTTCTGTCATTTCATAATAGTACGA 57.484 33.333 0.00 0.00 0.00 3.43
1923 1932 9.302345 ACTGTTCTGTCATTTCATAATAGTACG 57.698 33.333 0.00 0.00 29.54 3.67
1926 1935 9.950496 AAGACTGTTCTGTCATTTCATAATAGT 57.050 29.630 11.24 0.00 39.27 2.12
1930 1939 9.554395 TGTTAAGACTGTTCTGTCATTTCATAA 57.446 29.630 11.24 1.15 39.27 1.90
1931 1940 9.208022 CTGTTAAGACTGTTCTGTCATTTCATA 57.792 33.333 11.24 0.00 39.27 2.15
1932 1941 7.716998 ACTGTTAAGACTGTTCTGTCATTTCAT 59.283 33.333 11.24 0.00 39.27 2.57
1933 1942 7.047891 ACTGTTAAGACTGTTCTGTCATTTCA 58.952 34.615 11.24 5.62 39.27 2.69
1934 1943 7.484035 ACTGTTAAGACTGTTCTGTCATTTC 57.516 36.000 11.24 2.30 39.27 2.17
1935 1944 7.865706 AACTGTTAAGACTGTTCTGTCATTT 57.134 32.000 11.24 2.51 42.14 2.32
1936 1945 8.204836 ACTAACTGTTAAGACTGTTCTGTCATT 58.795 33.333 11.24 6.32 43.91 2.57
1937 1946 7.727181 ACTAACTGTTAAGACTGTTCTGTCAT 58.273 34.615 11.24 3.49 43.91 3.06
1938 1947 7.108841 ACTAACTGTTAAGACTGTTCTGTCA 57.891 36.000 11.24 0.00 43.91 3.58
1939 1948 7.169476 GGAACTAACTGTTAAGACTGTTCTGTC 59.831 40.741 19.90 2.39 43.91 3.51
1940 1949 6.985059 GGAACTAACTGTTAAGACTGTTCTGT 59.015 38.462 19.90 3.88 43.91 3.41
1941 1950 6.984474 TGGAACTAACTGTTAAGACTGTTCTG 59.016 38.462 19.90 3.40 43.91 3.02
1942 1951 7.120923 TGGAACTAACTGTTAAGACTGTTCT 57.879 36.000 19.90 0.00 43.91 3.01
1943 1952 6.073711 GCTGGAACTAACTGTTAAGACTGTTC 60.074 42.308 15.64 15.64 43.91 3.18
1944 1953 5.758784 GCTGGAACTAACTGTTAAGACTGTT 59.241 40.000 1.46 2.26 45.90 3.16
1945 1954 5.070580 AGCTGGAACTAACTGTTAAGACTGT 59.929 40.000 1.46 0.00 39.30 3.55
1946 1955 5.542779 AGCTGGAACTAACTGTTAAGACTG 58.457 41.667 1.46 0.00 39.30 3.51
1947 1956 5.810080 AGCTGGAACTAACTGTTAAGACT 57.190 39.130 1.46 0.00 39.30 3.24
1948 1957 7.095313 GGTTTAGCTGGAACTAACTGTTAAGAC 60.095 40.741 12.65 0.00 39.30 3.01
1949 1958 6.932960 GGTTTAGCTGGAACTAACTGTTAAGA 59.067 38.462 12.65 0.00 39.30 2.10
1950 1959 6.935208 AGGTTTAGCTGGAACTAACTGTTAAG 59.065 38.462 12.65 0.00 39.30 1.85
1951 1960 6.834107 AGGTTTAGCTGGAACTAACTGTTAA 58.166 36.000 12.65 0.00 39.30 2.01
1952 1961 6.269307 AGAGGTTTAGCTGGAACTAACTGTTA 59.731 38.462 12.65 0.00 39.30 2.41
1953 1962 5.071923 AGAGGTTTAGCTGGAACTAACTGTT 59.928 40.000 12.65 0.00 42.38 3.16
1954 1963 4.593634 AGAGGTTTAGCTGGAACTAACTGT 59.406 41.667 12.65 1.12 31.94 3.55
1955 1964 5.153950 AGAGGTTTAGCTGGAACTAACTG 57.846 43.478 12.65 0.00 31.94 3.16
1956 1965 5.071923 ACAAGAGGTTTAGCTGGAACTAACT 59.928 40.000 12.65 8.12 31.94 2.24
1957 1966 5.306394 ACAAGAGGTTTAGCTGGAACTAAC 58.694 41.667 12.65 6.56 31.94 2.34
1958 1967 5.307196 AGACAAGAGGTTTAGCTGGAACTAA 59.693 40.000 12.65 0.00 0.00 2.24
1959 1968 4.838986 AGACAAGAGGTTTAGCTGGAACTA 59.161 41.667 12.65 0.00 0.00 2.24
1960 1969 3.648545 AGACAAGAGGTTTAGCTGGAACT 59.351 43.478 12.65 2.10 0.00 3.01
1961 1970 3.748568 CAGACAAGAGGTTTAGCTGGAAC 59.251 47.826 0.00 0.88 0.00 3.62
1962 1971 3.646162 TCAGACAAGAGGTTTAGCTGGAA 59.354 43.478 0.00 0.00 0.00 3.53
1963 1972 3.239449 TCAGACAAGAGGTTTAGCTGGA 58.761 45.455 0.00 0.00 0.00 3.86
1964 1973 3.685139 TCAGACAAGAGGTTTAGCTGG 57.315 47.619 0.00 0.00 0.00 4.85
1965 1974 3.999663 CCTTCAGACAAGAGGTTTAGCTG 59.000 47.826 0.00 0.00 0.00 4.24
1966 1975 3.558109 GCCTTCAGACAAGAGGTTTAGCT 60.558 47.826 0.00 0.00 0.00 3.32
1967 1976 2.744741 GCCTTCAGACAAGAGGTTTAGC 59.255 50.000 0.00 0.00 0.00 3.09
1968 1977 2.996621 CGCCTTCAGACAAGAGGTTTAG 59.003 50.000 0.00 0.00 0.00 1.85
1969 1978 2.631062 TCGCCTTCAGACAAGAGGTTTA 59.369 45.455 0.00 0.00 0.00 2.01
1970 1979 1.416401 TCGCCTTCAGACAAGAGGTTT 59.584 47.619 0.00 0.00 0.00 3.27
1971 1980 1.048601 TCGCCTTCAGACAAGAGGTT 58.951 50.000 0.00 0.00 0.00 3.50
1972 1981 0.318762 GTCGCCTTCAGACAAGAGGT 59.681 55.000 0.00 0.00 38.42 3.85
1973 1982 0.318441 TGTCGCCTTCAGACAAGAGG 59.682 55.000 0.00 0.00 44.56 3.69
1974 1983 3.894257 TGTCGCCTTCAGACAAGAG 57.106 52.632 0.00 0.00 44.56 2.85
1979 1988 5.122396 ACAAGATTAAATGTCGCCTTCAGAC 59.878 40.000 0.00 0.00 38.98 3.51
1980 1989 5.122239 CACAAGATTAAATGTCGCCTTCAGA 59.878 40.000 0.00 0.00 0.00 3.27
1981 1990 5.327091 CACAAGATTAAATGTCGCCTTCAG 58.673 41.667 0.00 0.00 0.00 3.02
1982 1991 4.155826 CCACAAGATTAAATGTCGCCTTCA 59.844 41.667 0.00 0.00 0.00 3.02
1983 1992 4.438744 CCCACAAGATTAAATGTCGCCTTC 60.439 45.833 0.00 0.00 0.00 3.46
1984 1993 3.443681 CCCACAAGATTAAATGTCGCCTT 59.556 43.478 0.00 0.00 0.00 4.35
1985 1994 3.016736 CCCACAAGATTAAATGTCGCCT 58.983 45.455 0.00 0.00 0.00 5.52
1986 1995 2.479560 GCCCACAAGATTAAATGTCGCC 60.480 50.000 0.00 0.00 0.00 5.54
1987 1996 2.423538 AGCCCACAAGATTAAATGTCGC 59.576 45.455 0.00 0.00 0.00 5.19
1988 1997 3.689161 TCAGCCCACAAGATTAAATGTCG 59.311 43.478 0.00 0.00 0.00 4.35
1989 1998 5.591877 AGATCAGCCCACAAGATTAAATGTC 59.408 40.000 0.00 0.00 0.00 3.06
1990 1999 5.513233 AGATCAGCCCACAAGATTAAATGT 58.487 37.500 0.00 0.00 0.00 2.71
1991 2000 7.664731 AGATAGATCAGCCCACAAGATTAAATG 59.335 37.037 0.00 0.00 0.00 2.32
1992 2001 7.753630 AGATAGATCAGCCCACAAGATTAAAT 58.246 34.615 0.00 0.00 0.00 1.40
1993 2002 7.141758 AGATAGATCAGCCCACAAGATTAAA 57.858 36.000 0.00 0.00 0.00 1.52
1994 2003 6.753913 AGATAGATCAGCCCACAAGATTAA 57.246 37.500 0.00 0.00 0.00 1.40
1995 2004 6.100279 ACAAGATAGATCAGCCCACAAGATTA 59.900 38.462 0.00 0.00 0.00 1.75
1996 2005 5.104193 ACAAGATAGATCAGCCCACAAGATT 60.104 40.000 0.00 0.00 0.00 2.40
1997 2006 4.411540 ACAAGATAGATCAGCCCACAAGAT 59.588 41.667 0.00 0.00 0.00 2.40
1998 2007 3.776969 ACAAGATAGATCAGCCCACAAGA 59.223 43.478 0.00 0.00 0.00 3.02
1999 2008 3.875727 CACAAGATAGATCAGCCCACAAG 59.124 47.826 0.00 0.00 0.00 3.16
2000 2009 3.519107 TCACAAGATAGATCAGCCCACAA 59.481 43.478 0.00 0.00 0.00 3.33
2001 2010 3.106827 TCACAAGATAGATCAGCCCACA 58.893 45.455 0.00 0.00 0.00 4.17
2002 2011 3.827008 TCACAAGATAGATCAGCCCAC 57.173 47.619 0.00 0.00 0.00 4.61
2003 2012 3.118261 GGTTCACAAGATAGATCAGCCCA 60.118 47.826 0.00 0.00 0.00 5.36
2004 2013 3.471680 GGTTCACAAGATAGATCAGCCC 58.528 50.000 0.00 0.00 0.00 5.19
2005 2014 3.118261 TGGGTTCACAAGATAGATCAGCC 60.118 47.826 0.00 0.00 0.00 4.85
2006 2015 4.142609 TGGGTTCACAAGATAGATCAGC 57.857 45.455 0.00 0.00 0.00 4.26
2037 2046 7.509546 GGGAATGAGGTTGTAGATAAGAATGA 58.490 38.462 0.00 0.00 0.00 2.57
2159 2168 8.310382 CAAAACCATATATTCTGACAACCCAAA 58.690 33.333 0.00 0.00 0.00 3.28
2192 2201 2.032860 ATGGTCGGGAGAGGCGATTG 62.033 60.000 0.00 0.00 41.26 2.67
2301 2311 7.875327 ATACCATACCAAAACATACAGGAAC 57.125 36.000 0.00 0.00 0.00 3.62
2346 2356 2.750166 TGTTGTTTTCTCGCACTTCCAA 59.250 40.909 0.00 0.00 0.00 3.53
2347 2357 2.096819 GTGTTGTTTTCTCGCACTTCCA 59.903 45.455 0.00 0.00 0.00 3.53
2348 2358 2.540973 GGTGTTGTTTTCTCGCACTTCC 60.541 50.000 0.00 0.00 0.00 3.46
2349 2359 2.540973 GGGTGTTGTTTTCTCGCACTTC 60.541 50.000 0.00 0.00 0.00 3.01
2350 2360 1.404035 GGGTGTTGTTTTCTCGCACTT 59.596 47.619 0.00 0.00 0.00 3.16
2351 2361 1.021968 GGGTGTTGTTTTCTCGCACT 58.978 50.000 0.00 0.00 0.00 4.40
2352 2362 0.736053 TGGGTGTTGTTTTCTCGCAC 59.264 50.000 0.00 0.00 0.00 5.34
2353 2363 0.736053 GTGGGTGTTGTTTTCTCGCA 59.264 50.000 0.00 0.00 0.00 5.10
2354 2364 0.030235 GGTGGGTGTTGTTTTCTCGC 59.970 55.000 0.00 0.00 0.00 5.03
2355 2365 0.666374 GGGTGGGTGTTGTTTTCTCG 59.334 55.000 0.00 0.00 0.00 4.04
2356 2366 1.037493 GGGGTGGGTGTTGTTTTCTC 58.963 55.000 0.00 0.00 0.00 2.87
2357 2367 0.397957 GGGGGTGGGTGTTGTTTTCT 60.398 55.000 0.00 0.00 0.00 2.52
2358 2368 1.740332 CGGGGGTGGGTGTTGTTTTC 61.740 60.000 0.00 0.00 0.00 2.29
2359 2369 1.758906 CGGGGGTGGGTGTTGTTTT 60.759 57.895 0.00 0.00 0.00 2.43
2360 2370 2.123640 CGGGGGTGGGTGTTGTTT 60.124 61.111 0.00 0.00 0.00 2.83
2361 2371 4.906537 GCGGGGGTGGGTGTTGTT 62.907 66.667 0.00 0.00 0.00 2.83
2381 2391 4.323477 TTTCCCCCGTGTCGCCAG 62.323 66.667 0.00 0.00 0.00 4.85
2382 2392 4.629523 GTTTCCCCCGTGTCGCCA 62.630 66.667 0.00 0.00 0.00 5.69
2417 2427 4.452733 GTGGCGGAGTCGAAGGGG 62.453 72.222 0.00 0.00 39.00 4.79
2418 2428 4.796231 CGTGGCGGAGTCGAAGGG 62.796 72.222 0.00 0.00 39.00 3.95
2500 2510 1.814169 GCAGGAACGGAATCGACCC 60.814 63.158 0.00 0.00 40.11 4.46
2501 2511 3.795638 GCAGGAACGGAATCGACC 58.204 61.111 0.00 0.00 40.11 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.