Multiple sequence alignment - TraesCS2B01G290600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G290600 chr2B 100.000 3178 0 0 1 3178 403424229 403421052 0.000000e+00 5869.0
1 TraesCS2B01G290600 chr2B 92.169 779 32 8 1582 2344 10413304 10414069 0.000000e+00 1074.0
2 TraesCS2B01G290600 chr2B 87.136 653 52 7 2550 3178 17573701 17574345 0.000000e+00 712.0
3 TraesCS2B01G290600 chr2B 89.381 339 31 2 2683 3019 409320993 409321328 3.790000e-114 422.0
4 TraesCS2B01G290600 chr2B 93.119 218 7 3 2967 3178 184119019 184119234 2.380000e-81 313.0
5 TraesCS2B01G290600 chr2B 96.757 185 6 0 1 185 445254915 445254731 3.080000e-80 309.0
6 TraesCS2B01G290600 chr2B 96.175 183 7 0 1 183 10391565 10391747 1.850000e-77 300.0
7 TraesCS2B01G290600 chr2B 83.186 339 27 7 2683 3019 315666482 315666172 1.870000e-72 283.0
8 TraesCS2B01G290600 chr2B 84.163 221 28 4 2951 3171 249527568 249527781 1.160000e-49 207.0
9 TraesCS2B01G290600 chr2B 98.529 68 1 0 686 753 445254725 445254658 1.550000e-23 121.0
10 TraesCS2B01G290600 chr2B 98.529 68 1 0 686 753 733849897 733849830 1.550000e-23 121.0
11 TraesCS2B01G290600 chr2B 92.105 76 3 2 678 753 10391749 10391821 1.560000e-18 104.0
12 TraesCS2B01G290600 chr2B 94.643 56 1 2 2369 2422 403421786 403421731 5.650000e-13 86.1
13 TraesCS2B01G290600 chr2B 94.643 56 1 2 2444 2499 403421861 403421808 5.650000e-13 86.1
14 TraesCS2B01G290600 chr6A 95.652 1610 51 6 749 2344 189409960 189408356 0.000000e+00 2567.0
15 TraesCS2B01G290600 chr6A 95.407 1611 58 5 749 2344 130941958 130940349 0.000000e+00 2551.0
16 TraesCS2B01G290600 chr6A 96.216 185 6 1 1 185 130985641 130985458 5.150000e-78 302.0
17 TraesCS2B01G290600 chr6A 96.216 185 6 1 1 185 189427129 189426946 5.150000e-78 302.0
18 TraesCS2B01G290600 chr6A 94.048 84 5 0 2463 2546 189408247 189408164 9.250000e-26 128.0
19 TraesCS2B01G290600 chr6A 98.529 68 1 0 686 753 130985452 130985385 1.550000e-23 121.0
20 TraesCS2B01G290600 chr6A 98.529 68 1 0 686 753 189426940 189426873 1.550000e-23 121.0
21 TraesCS2B01G290600 chr6A 94.595 37 0 2 2388 2422 189408247 189408211 4.430000e-04 56.5
22 TraesCS2B01G290600 chr2A 95.533 1612 52 5 749 2344 554432732 554431125 0.000000e+00 2560.0
23 TraesCS2B01G290600 chr2A 90.345 1305 113 11 751 2046 187816559 187817859 0.000000e+00 1700.0
24 TraesCS2B01G290600 chr2A 86.879 564 39 7 2556 3096 413440012 413439461 1.630000e-167 599.0
25 TraesCS2B01G290600 chr2A 96.757 185 6 0 1 185 554449868 554449684 3.080000e-80 309.0
26 TraesCS2B01G290600 chr2A 98.529 68 1 0 686 753 554449678 554449611 1.550000e-23 121.0
27 TraesCS2B01G290600 chr2A 93.671 79 5 0 2463 2541 554431016 554430938 5.570000e-23 119.0
28 TraesCS2B01G290600 chr2A 94.000 50 2 1 3129 3178 413439457 413439409 1.220000e-09 75.0
29 TraesCS2B01G290600 chr2A 94.595 37 0 2 2388 2422 554431016 554430980 4.430000e-04 56.5
30 TraesCS2B01G290600 chr1A 95.280 1610 58 5 749 2344 522912898 522914503 0.000000e+00 2536.0
31 TraesCS2B01G290600 chr1A 96.757 185 6 0 1 185 522884887 522885071 3.080000e-80 309.0
32 TraesCS2B01G290600 chr1A 92.857 84 6 0 2463 2546 522914612 522914695 4.300000e-24 122.0
33 TraesCS2B01G290600 chr1A 98.529 68 1 0 686 753 522885077 522885144 1.550000e-23 121.0
34 TraesCS2B01G290600 chr1A 100.000 29 0 0 2388 2416 522914612 522914640 2.000000e-03 54.7
35 TraesCS2B01G290600 chr4B 92.884 1616 83 19 751 2344 243643351 243644956 0.000000e+00 2318.0
36 TraesCS2B01G290600 chr4B 84.000 175 25 1 125 299 494587205 494587376 7.050000e-37 165.0
37 TraesCS2B01G290600 chr4B 92.308 91 7 0 313 403 494587655 494587745 2.570000e-26 130.0
38 TraesCS2B01G290600 chr5A 90.235 1321 118 9 751 2063 365135191 365133874 0.000000e+00 1714.0
39 TraesCS2B01G290600 chrUn 90.031 1304 116 13 751 2046 155275458 155274161 0.000000e+00 1676.0
40 TraesCS2B01G290600 chrUn 90.031 1304 116 13 751 2046 351594699 351595996 0.000000e+00 1676.0
41 TraesCS2B01G290600 chr5B 90.895 648 35 5 2552 3178 239256695 239257339 0.000000e+00 848.0
42 TraesCS2B01G290600 chr5B 87.692 650 48 8 2553 3178 119422181 119421540 0.000000e+00 728.0
43 TraesCS2B01G290600 chr4D 88.117 648 36 15 2553 3177 500525822 500525193 0.000000e+00 732.0
44 TraesCS2B01G290600 chr4D 85.714 147 20 1 125 271 399970674 399970819 1.530000e-33 154.0
45 TraesCS2B01G290600 chr1B 88.670 609 48 5 2553 3140 49141906 49141298 0.000000e+00 723.0
46 TraesCS2B01G290600 chr1B 85.106 376 35 8 2809 3178 46133528 46133888 6.480000e-97 364.0
47 TraesCS2B01G290600 chr1D 88.245 621 30 17 2553 3149 49514935 49515536 0.000000e+00 702.0
48 TraesCS2B01G290600 chr1D 83.333 642 49 12 2553 3178 468884058 468884657 1.000000e-149 540.0
49 TraesCS2B01G290600 chr3B 86.883 648 52 9 2553 3177 754766937 754766300 0.000000e+00 695.0
50 TraesCS2B01G290600 chr3B 88.278 546 42 3 2553 3077 737680403 737680947 4.470000e-178 634.0
51 TraesCS2B01G290600 chr3D 85.616 438 29 7 2545 2965 598881523 598881103 2.270000e-116 429.0
52 TraesCS2B01G290600 chr3D 87.031 293 21 9 2066 2344 123293958 123294247 6.620000e-82 315.0
53 TraesCS2B01G290600 chr3D 86.054 294 22 12 2066 2344 122586774 122586485 6.660000e-77 298.0
54 TraesCS2B01G290600 chr3D 91.667 120 8 2 496 613 122588401 122588282 7.050000e-37 165.0
55 TraesCS2B01G290600 chr3D 92.920 113 8 0 501 613 123291781 123291893 7.050000e-37 165.0
56 TraesCS2B01G290600 chr5D 88.136 354 26 6 2683 3021 463260485 463260837 1.060000e-109 407.0
57 TraesCS2B01G290600 chr6B 91.304 299 12 1 1 299 322065851 322066135 2.300000e-106 396.0
58 TraesCS2B01G290600 chr6B 93.194 191 13 0 314 504 322066627 322066817 6.710000e-72 281.0
59 TraesCS2B01G290600 chr6B 95.513 156 7 0 501 656 322066893 322067048 1.890000e-62 250.0
60 TraesCS2B01G290600 chr7A 96.757 185 6 0 1 185 63475064 63475248 3.080000e-80 309.0
61 TraesCS2B01G290600 chr7A 94.048 84 5 0 2463 2546 63482501 63482584 9.250000e-26 128.0
62 TraesCS2B01G290600 chr7A 97.015 67 2 0 687 753 63475254 63475320 2.590000e-21 113.0
63 TraesCS2B01G290600 chr7A 94.595 37 0 2 2388 2422 63482501 63482537 4.430000e-04 56.5
64 TraesCS2B01G290600 chr2D 89.418 189 15 4 2066 2249 81967440 81967628 1.910000e-57 233.0
65 TraesCS2B01G290600 chr6D 90.476 168 15 1 2542 2708 433906334 433906501 1.480000e-53 220.0
66 TraesCS2B01G290600 chr6D 93.878 98 6 0 516 613 119507824 119507727 7.100000e-32 148.0
67 TraesCS2B01G290600 chr4A 88.506 174 20 0 126 299 58221597 58221770 8.930000e-51 211.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G290600 chr2B 403421052 403424229 3177 True 2013.733333 5869 96.428667 1 3178 3 chr2B.!!$R3 3177
1 TraesCS2B01G290600 chr2B 10413304 10414069 765 False 1074.000000 1074 92.169000 1582 2344 1 chr2B.!!$F1 762
2 TraesCS2B01G290600 chr2B 17573701 17574345 644 False 712.000000 712 87.136000 2550 3178 1 chr2B.!!$F2 628
3 TraesCS2B01G290600 chr6A 130940349 130941958 1609 True 2551.000000 2551 95.407000 749 2344 1 chr6A.!!$R1 1595
4 TraesCS2B01G290600 chr6A 189408164 189409960 1796 True 917.166667 2567 94.765000 749 2546 3 chr6A.!!$R3 1797
5 TraesCS2B01G290600 chr2A 187816559 187817859 1300 False 1700.000000 1700 90.345000 751 2046 1 chr2A.!!$F1 1295
6 TraesCS2B01G290600 chr2A 554430938 554432732 1794 True 911.833333 2560 94.599667 749 2541 3 chr2A.!!$R2 1792
7 TraesCS2B01G290600 chr2A 413439409 413440012 603 True 337.000000 599 90.439500 2556 3178 2 chr2A.!!$R1 622
8 TraesCS2B01G290600 chr1A 522912898 522914695 1797 False 904.233333 2536 96.045667 749 2546 3 chr1A.!!$F2 1797
9 TraesCS2B01G290600 chr4B 243643351 243644956 1605 False 2318.000000 2318 92.884000 751 2344 1 chr4B.!!$F1 1593
10 TraesCS2B01G290600 chr5A 365133874 365135191 1317 True 1714.000000 1714 90.235000 751 2063 1 chr5A.!!$R1 1312
11 TraesCS2B01G290600 chrUn 155274161 155275458 1297 True 1676.000000 1676 90.031000 751 2046 1 chrUn.!!$R1 1295
12 TraesCS2B01G290600 chrUn 351594699 351595996 1297 False 1676.000000 1676 90.031000 751 2046 1 chrUn.!!$F1 1295
13 TraesCS2B01G290600 chr5B 239256695 239257339 644 False 848.000000 848 90.895000 2552 3178 1 chr5B.!!$F1 626
14 TraesCS2B01G290600 chr5B 119421540 119422181 641 True 728.000000 728 87.692000 2553 3178 1 chr5B.!!$R1 625
15 TraesCS2B01G290600 chr4D 500525193 500525822 629 True 732.000000 732 88.117000 2553 3177 1 chr4D.!!$R1 624
16 TraesCS2B01G290600 chr1B 49141298 49141906 608 True 723.000000 723 88.670000 2553 3140 1 chr1B.!!$R1 587
17 TraesCS2B01G290600 chr1D 49514935 49515536 601 False 702.000000 702 88.245000 2553 3149 1 chr1D.!!$F1 596
18 TraesCS2B01G290600 chr1D 468884058 468884657 599 False 540.000000 540 83.333000 2553 3178 1 chr1D.!!$F2 625
19 TraesCS2B01G290600 chr3B 754766300 754766937 637 True 695.000000 695 86.883000 2553 3177 1 chr3B.!!$R1 624
20 TraesCS2B01G290600 chr3B 737680403 737680947 544 False 634.000000 634 88.278000 2553 3077 1 chr3B.!!$F1 524
21 TraesCS2B01G290600 chr3D 123291781 123294247 2466 False 240.000000 315 89.975500 501 2344 2 chr3D.!!$F1 1843
22 TraesCS2B01G290600 chr3D 122586485 122588401 1916 True 231.500000 298 88.860500 496 2344 2 chr3D.!!$R2 1848
23 TraesCS2B01G290600 chr6B 322065851 322067048 1197 False 309.000000 396 93.337000 1 656 3 chr6B.!!$F1 655

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
465 943 0.034059 CAGTTCAAGGGAGCGACACT 59.966 55.0 0.00 0.0 0.00 3.55 F
958 1651 2.236395 CGAGGAAGAAAAGGCCTCCTAA 59.764 50.0 5.23 0.0 44.19 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1899 3561 3.641648 ACGGCAGTTGAATTTCATTGTG 58.358 40.909 0.0 0.09 0.0 3.33 R
2548 4601 2.271800 GCAACGGGTCATCTAGTGAAG 58.728 52.381 0.0 0.00 38.9 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
136 137 4.829492 GGGCTACATATCCTTCTTGCATTT 59.171 41.667 0.00 0.00 0.00 2.32
167 168 4.758674 TCCTTCATCACTTCTGCTTTCTTG 59.241 41.667 0.00 0.00 0.00 3.02
173 174 4.397420 TCACTTCTGCTTTCTTGGCAATA 58.603 39.130 0.00 0.00 39.30 1.90
204 205 9.723601 GGCATCTCTTCATTTATATCTCTTCTT 57.276 33.333 0.00 0.00 0.00 2.52
257 258 1.350684 TCCAGCTTCCAGTGCATAACA 59.649 47.619 0.00 0.00 0.00 2.41
320 798 3.555547 TGGATGAACATTTATCGTCTGCG 59.444 43.478 0.00 0.00 34.07 5.18
325 803 3.247006 ACATTTATCGTCTGCGTTCCT 57.753 42.857 0.00 0.00 39.49 3.36
346 824 2.499289 TGATGGAGGAAAGCTCACTCTC 59.501 50.000 10.79 5.38 0.00 3.20
352 830 2.564947 AGGAAAGCTCACTCTCGTCATT 59.435 45.455 0.00 0.00 0.00 2.57
361 839 3.928992 TCACTCTCGTCATTGCTTTCATC 59.071 43.478 0.00 0.00 0.00 2.92
410 888 1.293498 CACCTGGTCCAAGGACTCG 59.707 63.158 18.03 9.61 44.04 4.18
421 899 2.293122 CCAAGGACTCGCAATGTTTCAA 59.707 45.455 0.00 0.00 0.00 2.69
434 912 1.465387 TGTTTCAACACGCGAACACTT 59.535 42.857 15.93 0.00 33.17 3.16
440 918 2.724744 ACACGCGAACACTTGTAAAC 57.275 45.000 15.93 0.00 0.00 2.01
445 923 3.488310 ACGCGAACACTTGTAAACTGTAG 59.512 43.478 15.93 0.00 0.00 2.74
464 942 1.569479 GCAGTTCAAGGGAGCGACAC 61.569 60.000 0.00 0.00 0.00 3.67
465 943 0.034059 CAGTTCAAGGGAGCGACACT 59.966 55.000 0.00 0.00 0.00 3.55
726 1283 9.828852 GTAACTATGAGTGATACTATGTACTGC 57.171 37.037 0.00 0.00 0.00 4.40
727 1284 8.698973 AACTATGAGTGATACTATGTACTGCT 57.301 34.615 0.00 0.00 0.00 4.24
728 1285 8.330466 ACTATGAGTGATACTATGTACTGCTC 57.670 38.462 0.00 0.00 0.00 4.26
729 1286 8.160765 ACTATGAGTGATACTATGTACTGCTCT 58.839 37.037 0.00 0.00 0.00 4.09
730 1287 7.831691 ATGAGTGATACTATGTACTGCTCTT 57.168 36.000 0.00 0.00 0.00 2.85
731 1288 7.265647 TGAGTGATACTATGTACTGCTCTTC 57.734 40.000 0.00 0.00 0.00 2.87
732 1289 7.057264 TGAGTGATACTATGTACTGCTCTTCT 58.943 38.462 0.00 0.00 0.00 2.85
733 1290 7.012799 TGAGTGATACTATGTACTGCTCTTCTG 59.987 40.741 0.00 0.00 0.00 3.02
734 1291 6.831353 AGTGATACTATGTACTGCTCTTCTGT 59.169 38.462 0.00 0.00 0.00 3.41
735 1292 7.340743 AGTGATACTATGTACTGCTCTTCTGTT 59.659 37.037 0.00 0.00 0.00 3.16
736 1293 7.976734 GTGATACTATGTACTGCTCTTCTGTTT 59.023 37.037 0.00 0.00 0.00 2.83
737 1294 8.531982 TGATACTATGTACTGCTCTTCTGTTTT 58.468 33.333 0.00 0.00 0.00 2.43
738 1295 8.709386 ATACTATGTACTGCTCTTCTGTTTTG 57.291 34.615 0.00 0.00 0.00 2.44
739 1296 4.756084 ATGTACTGCTCTTCTGTTTTGC 57.244 40.909 0.00 0.00 0.00 3.68
740 1297 3.540617 TGTACTGCTCTTCTGTTTTGCA 58.459 40.909 0.00 0.00 0.00 4.08
813 1372 6.639632 TCTGCCATTAATAGCCAAAGAATC 57.360 37.500 3.34 0.00 0.00 2.52
836 1524 2.795329 TGAGATTGAAGGAGTTTGGGC 58.205 47.619 0.00 0.00 0.00 5.36
958 1651 2.236395 CGAGGAAGAAAAGGCCTCCTAA 59.764 50.000 5.23 0.00 44.19 2.69
1141 2099 6.371278 ACCCAATGCTAAATCATTCAGATCT 58.629 36.000 0.00 0.00 35.39 2.75
1315 2273 5.369110 TCCCTAGGTAAAAATGCCCGTATTA 59.631 40.000 8.29 0.00 0.00 0.98
1476 2796 9.547753 TGCTACATATGGAAATTCTACTTCTTC 57.452 33.333 7.80 0.00 0.00 2.87
1540 2860 4.037222 AGGTCAATTTCAGGTGGGTTTTT 58.963 39.130 0.00 0.00 0.00 1.94
1573 2893 7.416154 TCTCCAGTTTTACAAGATTTGTACG 57.584 36.000 1.39 0.00 45.16 3.67
1594 2914 3.997672 CCACGGGCAAATTTTTGGA 57.002 47.368 5.28 0.00 38.57 3.53
1715 3152 4.082354 ACTCAGGAATTTTCATTCTGCAGC 60.082 41.667 9.47 0.00 39.17 5.25
1899 3561 5.221880 TGTTTGAGATTGTAACATGCAAGC 58.778 37.500 0.00 0.00 33.00 4.01
2048 3716 9.773328 CAGTGAAATTAATTTCTTCTAATCGCA 57.227 29.630 31.05 12.82 44.85 5.10
2072 4023 9.554724 GCATTTACGTTTCATCAAATTCTTCTA 57.445 29.630 0.00 0.00 0.00 2.10
2186 4139 4.855715 TCCTTACCGATAGAGCAATCTG 57.144 45.455 0.00 0.00 39.76 2.90
2192 4147 5.803020 ACCGATAGAGCAATCTGTTTTTC 57.197 39.130 0.00 0.00 39.76 2.29
2208 4164 5.437060 TGTTTTTCTCTTGCTGGTCTAGTT 58.563 37.500 0.00 0.00 0.00 2.24
2209 4165 5.527582 TGTTTTTCTCTTGCTGGTCTAGTTC 59.472 40.000 0.00 0.00 0.00 3.01
2210 4166 4.955811 TTTCTCTTGCTGGTCTAGTTCA 57.044 40.909 0.00 0.00 0.00 3.18
2325 4296 8.090788 ACACCTTGGTGATACTATTATCAGTT 57.909 34.615 24.67 0.00 43.96 3.16
2356 4409 9.790389 TCATCAAGTTGTAATAAACGTTGTTTT 57.210 25.926 0.00 0.00 35.13 2.43
2368 4421 9.575783 AATAAACGTTGTTTTGTAATGTTCTGT 57.424 25.926 0.00 0.00 36.53 3.41
2370 4423 8.967552 AAACGTTGTTTTGTAATGTTCTGTAA 57.032 26.923 0.00 0.00 36.53 2.41
2371 4424 9.575783 AAACGTTGTTTTGTAATGTTCTGTAAT 57.424 25.926 0.00 0.00 36.53 1.89
2380 4433 9.967451 TTTGTAATGTTCTGTAATATTCCTGGA 57.033 29.630 0.00 0.00 30.15 3.86
2381 4434 9.967451 TTGTAATGTTCTGTAATATTCCTGGAA 57.033 29.630 12.26 12.26 30.15 3.53
2382 4435 9.391006 TGTAATGTTCTGTAATATTCCTGGAAC 57.609 33.333 12.11 0.00 30.15 3.62
2383 4436 9.391006 GTAATGTTCTGTAATATTCCTGGAACA 57.609 33.333 12.11 18.99 43.18 3.18
2384 4437 8.877864 AATGTTCTGTAATATTCCTGGAACAA 57.122 30.769 12.11 3.39 42.61 2.83
2385 4438 7.921786 TGTTCTGTAATATTCCTGGAACAAG 57.078 36.000 12.11 3.76 38.62 3.16
2386 4439 7.685481 TGTTCTGTAATATTCCTGGAACAAGA 58.315 34.615 12.11 5.96 38.62 3.02
2387 4440 8.328758 TGTTCTGTAATATTCCTGGAACAAGAT 58.671 33.333 12.11 0.00 38.62 2.40
2388 4441 9.178758 GTTCTGTAATATTCCTGGAACAAGATT 57.821 33.333 12.11 11.15 38.70 2.40
2389 4442 9.753674 TTCTGTAATATTCCTGGAACAAGATTT 57.246 29.630 12.11 0.00 38.70 2.17
2390 4443 9.753674 TCTGTAATATTCCTGGAACAAGATTTT 57.246 29.630 12.11 0.00 38.70 1.82
2392 4445 9.753674 TGTAATATTCCTGGAACAAGATTTTCT 57.246 29.630 12.11 0.00 38.70 2.52
2394 4447 8.655935 AATATTCCTGGAACAAGATTTTCTGT 57.344 30.769 12.11 0.00 38.70 3.41
2395 4448 6.983906 ATTCCTGGAACAAGATTTTCTGTT 57.016 33.333 12.11 0.00 38.70 3.16
2396 4449 6.790232 TTCCTGGAACAAGATTTTCTGTTT 57.210 33.333 4.68 0.00 38.70 2.83
2397 4450 6.391227 TCCTGGAACAAGATTTTCTGTTTC 57.609 37.500 0.00 0.00 38.70 2.78
2398 4451 5.890985 TCCTGGAACAAGATTTTCTGTTTCA 59.109 36.000 0.00 0.00 38.70 2.69
2399 4452 6.550854 TCCTGGAACAAGATTTTCTGTTTCAT 59.449 34.615 0.00 0.00 38.70 2.57
2400 4453 6.643770 CCTGGAACAAGATTTTCTGTTTCATG 59.356 38.462 0.00 0.00 38.70 3.07
2401 4454 7.111247 TGGAACAAGATTTTCTGTTTCATGT 57.889 32.000 0.00 0.00 31.92 3.21
2402 4455 7.555087 TGGAACAAGATTTTCTGTTTCATGTT 58.445 30.769 0.00 0.00 34.93 2.71
2403 4456 8.040132 TGGAACAAGATTTTCTGTTTCATGTTT 58.960 29.630 0.00 0.00 33.08 2.83
2404 4457 8.542953 GGAACAAGATTTTCTGTTTCATGTTTC 58.457 33.333 0.00 0.00 33.08 2.78
2405 4458 9.305925 GAACAAGATTTTCTGTTTCATGTTTCT 57.694 29.630 0.00 0.00 33.08 2.52
2406 4459 9.657419 AACAAGATTTTCTGTTTCATGTTTCTT 57.343 25.926 0.00 0.00 29.79 2.52
2407 4460 9.657419 ACAAGATTTTCTGTTTCATGTTTCTTT 57.343 25.926 0.00 0.00 0.00 2.52
2408 4461 9.910511 CAAGATTTTCTGTTTCATGTTTCTTTG 57.089 29.630 0.00 0.00 0.00 2.77
2409 4462 8.652810 AGATTTTCTGTTTCATGTTTCTTTGG 57.347 30.769 0.00 0.00 0.00 3.28
2410 4463 7.712205 AGATTTTCTGTTTCATGTTTCTTTGGG 59.288 33.333 0.00 0.00 0.00 4.12
2411 4464 6.537453 TTTCTGTTTCATGTTTCTTTGGGA 57.463 33.333 0.00 0.00 0.00 4.37
2412 4465 5.772825 TCTGTTTCATGTTTCTTTGGGAG 57.227 39.130 0.00 0.00 0.00 4.30
2413 4466 5.445069 TCTGTTTCATGTTTCTTTGGGAGA 58.555 37.500 0.00 0.00 0.00 3.71
2414 4467 5.299279 TCTGTTTCATGTTTCTTTGGGAGAC 59.701 40.000 0.00 0.00 33.02 3.36
2415 4468 4.952957 TGTTTCATGTTTCTTTGGGAGACA 59.047 37.500 0.00 0.00 42.07 3.41
2416 4469 5.598005 TGTTTCATGTTTCTTTGGGAGACAT 59.402 36.000 0.00 0.00 46.42 3.06
2421 4474 5.514274 TGTTTCTTTGGGAGACATGAAAC 57.486 39.130 0.00 0.00 44.29 2.78
2422 4475 5.200483 TGTTTCTTTGGGAGACATGAAACT 58.800 37.500 18.12 0.00 44.32 2.66
2423 4476 6.361433 TGTTTCTTTGGGAGACATGAAACTA 58.639 36.000 18.12 9.11 44.32 2.24
2424 4477 7.004086 TGTTTCTTTGGGAGACATGAAACTAT 58.996 34.615 18.12 0.00 44.32 2.12
2425 4478 8.160765 TGTTTCTTTGGGAGACATGAAACTATA 58.839 33.333 18.12 5.37 44.32 1.31
2426 4479 8.451748 GTTTCTTTGGGAGACATGAAACTATAC 58.548 37.037 0.00 0.00 42.73 1.47
2427 4480 6.650120 TCTTTGGGAGACATGAAACTATACC 58.350 40.000 0.00 0.94 0.00 2.73
2428 4481 6.214615 TCTTTGGGAGACATGAAACTATACCA 59.785 38.462 0.00 3.34 0.00 3.25
2429 4482 6.575244 TTGGGAGACATGAAACTATACCAT 57.425 37.500 0.00 0.00 0.00 3.55
2430 4483 6.575244 TGGGAGACATGAAACTATACCATT 57.425 37.500 0.00 0.00 0.00 3.16
2431 4484 6.591935 TGGGAGACATGAAACTATACCATTC 58.408 40.000 0.00 0.00 0.00 2.67
2432 4485 6.386927 TGGGAGACATGAAACTATACCATTCT 59.613 38.462 0.00 0.00 0.00 2.40
2433 4486 7.567250 TGGGAGACATGAAACTATACCATTCTA 59.433 37.037 0.00 0.00 0.00 2.10
2434 4487 8.598041 GGGAGACATGAAACTATACCATTCTAT 58.402 37.037 0.00 0.00 0.00 1.98
2435 4488 9.429359 GGAGACATGAAACTATACCATTCTATG 57.571 37.037 0.00 0.00 0.00 2.23
2436 4489 9.988815 GAGACATGAAACTATACCATTCTATGT 57.011 33.333 0.00 0.00 32.61 2.29
2451 4504 9.125026 ACCATTCTATGTTCAGAATAATGTTCC 57.875 33.333 0.00 0.00 42.14 3.62
2452 4505 9.347240 CCATTCTATGTTCAGAATAATGTTCCT 57.653 33.333 0.00 0.00 42.14 3.36
2454 4507 8.737168 TTCTATGTTCAGAATAATGTTCCTGG 57.263 34.615 0.00 0.00 29.55 4.45
2455 4508 8.089625 TCTATGTTCAGAATAATGTTCCTGGA 57.910 34.615 0.00 0.00 0.00 3.86
2456 4509 8.548025 TCTATGTTCAGAATAATGTTCCTGGAA 58.452 33.333 4.68 4.68 0.00 3.53
2457 4510 6.817765 TGTTCAGAATAATGTTCCTGGAAC 57.182 37.500 28.50 28.50 42.26 3.62
2493 4546 5.560722 TCATGTTTCTTTGGGAGACAGTA 57.439 39.130 0.00 0.00 41.35 2.74
2509 4562 4.649674 AGACAGTAGAAACAGTGGAACAGA 59.350 41.667 0.00 0.00 41.80 3.41
2530 4583 8.045176 ACAGAAGAAACTATACCATTCTTTGC 57.955 34.615 1.98 0.00 41.96 3.68
2546 4599 7.116805 CCATTCTTTGCTTTACTTCCATTGTTC 59.883 37.037 0.00 0.00 0.00 3.18
2547 4600 6.707440 TCTTTGCTTTACTTCCATTGTTCA 57.293 33.333 0.00 0.00 0.00 3.18
2548 4601 6.503524 TCTTTGCTTTACTTCCATTGTTCAC 58.496 36.000 0.00 0.00 0.00 3.18
2602 4655 2.949106 CCGAGTGCAAGCCAAGTG 59.051 61.111 0.00 0.00 0.00 3.16
2624 4677 6.751888 AGTGTTGAAAGAGTGTGCATTAAAAC 59.248 34.615 0.00 0.00 0.00 2.43
2863 4933 0.515564 CGGCTTACAGTTCAAACCCG 59.484 55.000 0.00 0.00 0.00 5.28
2885 4955 5.418676 CGAACTTGGGGCATATTTGAATTT 58.581 37.500 0.00 0.00 0.00 1.82
2939 5009 6.929625 TGAAAAGTCTTGGACATTTTCACAA 58.070 32.000 20.31 9.35 40.33 3.33
2996 5066 9.813446 AAATTTTCCAAGATATTTCTGATGAGC 57.187 29.630 0.00 0.00 30.72 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 90 9.567776 CCCTAACACCCAATTTTTCTAAAATTT 57.432 29.630 7.25 0.00 0.00 1.82
90 91 7.663905 GCCCTAACACCCAATTTTTCTAAAATT 59.336 33.333 4.70 4.70 0.00 1.82
91 92 7.017155 AGCCCTAACACCCAATTTTTCTAAAAT 59.983 33.333 0.00 0.00 0.00 1.82
92 93 6.327887 AGCCCTAACACCCAATTTTTCTAAAA 59.672 34.615 0.00 0.00 0.00 1.52
93 94 5.841783 AGCCCTAACACCCAATTTTTCTAAA 59.158 36.000 0.00 0.00 0.00 1.85
136 137 5.877012 GCAGAAGTGATGAAGGAGTAATTCA 59.123 40.000 0.00 0.00 40.72 2.57
143 144 4.577875 AGAAAGCAGAAGTGATGAAGGAG 58.422 43.478 0.00 0.00 0.00 3.69
167 168 3.696051 TGAAGAGATGCCAACTTATTGCC 59.304 43.478 0.00 0.00 34.17 4.52
173 174 9.282569 GAGATATAAATGAAGAGATGCCAACTT 57.717 33.333 0.00 0.00 0.00 2.66
204 205 4.776322 CCACCAATCGCTCCCGCA 62.776 66.667 0.00 0.00 35.30 5.69
246 247 4.789012 AGGGAAAACATGTTATGCACTG 57.211 40.909 12.39 0.00 0.00 3.66
257 258 7.420680 CCAATGATCCTAGACTAGGGAAAACAT 60.421 40.741 25.35 18.90 46.24 2.71
292 308 8.064222 CAGACGATAAATGTTCATCCATGTTAC 58.936 37.037 0.00 0.00 0.00 2.50
293 309 7.254761 GCAGACGATAAATGTTCATCCATGTTA 60.255 37.037 0.00 0.00 0.00 2.41
294 310 6.458751 GCAGACGATAAATGTTCATCCATGTT 60.459 38.462 0.00 0.00 0.00 2.71
295 311 5.008019 GCAGACGATAAATGTTCATCCATGT 59.992 40.000 0.00 0.00 0.00 3.21
303 319 3.617263 AGGAACGCAGACGATAAATGTTC 59.383 43.478 0.00 0.00 43.93 3.18
307 323 3.520290 TCAGGAACGCAGACGATAAAT 57.480 42.857 0.00 0.00 43.93 1.40
308 324 3.186909 CATCAGGAACGCAGACGATAAA 58.813 45.455 0.00 0.00 43.93 1.40
309 325 2.481276 CCATCAGGAACGCAGACGATAA 60.481 50.000 0.00 0.00 39.19 1.75
310 326 1.067060 CCATCAGGAACGCAGACGATA 59.933 52.381 0.00 0.00 39.19 2.92
311 327 0.179100 CCATCAGGAACGCAGACGAT 60.179 55.000 0.00 0.00 39.19 3.73
312 328 1.215382 CCATCAGGAACGCAGACGA 59.785 57.895 0.00 0.00 39.19 4.20
325 803 2.499289 GAGAGTGAGCTTTCCTCCATCA 59.501 50.000 0.00 0.00 39.98 3.07
346 824 3.434641 AGACACTGATGAAAGCAATGACG 59.565 43.478 0.00 0.00 0.00 4.35
352 830 3.396560 CTGTCAGACACTGATGAAAGCA 58.603 45.455 0.00 0.00 42.73 3.91
361 839 0.320247 GGTGGAGCTGTCAGACACTG 60.320 60.000 16.95 0.00 32.88 3.66
410 888 1.187055 GTTCGCGTGTTGAAACATTGC 59.813 47.619 5.77 11.27 41.59 3.56
421 899 2.029970 CAGTTTACAAGTGTTCGCGTGT 59.970 45.455 5.77 4.26 35.44 4.49
440 918 1.731720 GCTCCCTTGAACTGCTACAG 58.268 55.000 0.00 0.00 37.52 2.74
445 923 1.301716 TGTCGCTCCCTTGAACTGC 60.302 57.895 0.00 0.00 0.00 4.40
563 1120 5.830912 TCTTGCAAGTTTCACCTTGTATTG 58.169 37.500 25.19 0.00 43.03 1.90
700 1257 9.828852 GCAGTACATAGTATCACTCATAGTTAC 57.171 37.037 0.00 0.00 0.00 2.50
701 1258 9.794719 AGCAGTACATAGTATCACTCATAGTTA 57.205 33.333 0.00 0.00 0.00 2.24
702 1259 8.698973 AGCAGTACATAGTATCACTCATAGTT 57.301 34.615 0.00 0.00 0.00 2.24
703 1260 8.160765 AGAGCAGTACATAGTATCACTCATAGT 58.839 37.037 0.00 0.00 0.00 2.12
704 1261 8.560355 AGAGCAGTACATAGTATCACTCATAG 57.440 38.462 0.00 0.00 0.00 2.23
705 1262 8.926092 AAGAGCAGTACATAGTATCACTCATA 57.074 34.615 0.00 0.00 0.00 2.15
706 1263 7.723616 AGAAGAGCAGTACATAGTATCACTCAT 59.276 37.037 0.00 0.00 0.00 2.90
707 1264 7.012799 CAGAAGAGCAGTACATAGTATCACTCA 59.987 40.741 0.00 0.00 0.00 3.41
708 1265 7.012894 ACAGAAGAGCAGTACATAGTATCACTC 59.987 40.741 0.00 0.00 0.00 3.51
709 1266 6.831353 ACAGAAGAGCAGTACATAGTATCACT 59.169 38.462 0.00 0.00 0.00 3.41
710 1267 7.033530 ACAGAAGAGCAGTACATAGTATCAC 57.966 40.000 0.00 0.00 0.00 3.06
711 1268 7.646548 AACAGAAGAGCAGTACATAGTATCA 57.353 36.000 0.00 0.00 0.00 2.15
712 1269 8.812329 CAAAACAGAAGAGCAGTACATAGTATC 58.188 37.037 0.00 0.00 0.00 2.24
713 1270 7.278868 GCAAAACAGAAGAGCAGTACATAGTAT 59.721 37.037 0.00 0.00 0.00 2.12
714 1271 6.590292 GCAAAACAGAAGAGCAGTACATAGTA 59.410 38.462 0.00 0.00 0.00 1.82
715 1272 5.409826 GCAAAACAGAAGAGCAGTACATAGT 59.590 40.000 0.00 0.00 0.00 2.12
716 1273 5.409520 TGCAAAACAGAAGAGCAGTACATAG 59.590 40.000 0.00 0.00 0.00 2.23
717 1274 5.304778 TGCAAAACAGAAGAGCAGTACATA 58.695 37.500 0.00 0.00 0.00 2.29
718 1275 4.136796 TGCAAAACAGAAGAGCAGTACAT 58.863 39.130 0.00 0.00 0.00 2.29
719 1276 3.540617 TGCAAAACAGAAGAGCAGTACA 58.459 40.909 0.00 0.00 0.00 2.90
775 1334 6.896021 AATGGCAGAAGAATATCATGAAGG 57.104 37.500 0.00 0.00 0.00 3.46
813 1372 4.321527 GCCCAAACTCCTTCAATCTCAAAG 60.322 45.833 0.00 0.00 0.00 2.77
850 1539 5.525378 CACCAGGCTTGAATGATAGAGTTAC 59.475 44.000 0.00 0.00 0.00 2.50
958 1651 4.275936 GTGCTCCACTATTTCACTGTTTGT 59.724 41.667 0.00 0.00 0.00 2.83
1087 2045 2.942804 TCTCCTGCATGTTTGTTTCCA 58.057 42.857 0.00 0.00 0.00 3.53
1315 2273 9.325198 GTGATTAAAATCCACTGTTTTTCCTTT 57.675 29.630 0.41 0.00 34.50 3.11
1476 2796 8.208718 TCTTGATTCGAAATTACCTATGTTGG 57.791 34.615 0.00 0.00 0.00 3.77
1680 3112 5.350504 AATTCCTGAGTCATACCTGTGAG 57.649 43.478 0.00 0.00 0.00 3.51
1715 3152 6.204688 TCAAGACCTTTGTACTTGCTAACATG 59.795 38.462 0.00 0.00 40.20 3.21
1899 3561 3.641648 ACGGCAGTTGAATTTCATTGTG 58.358 40.909 0.00 0.09 0.00 3.33
2186 4139 5.527582 TGAACTAGACCAGCAAGAGAAAAAC 59.472 40.000 0.00 0.00 0.00 2.43
2192 4147 4.264460 ACTTGAACTAGACCAGCAAGAG 57.736 45.455 0.00 3.90 39.27 2.85
2208 4164 5.110814 TGAAGGTCTTGGAAGAAACTTGA 57.889 39.130 10.63 2.69 35.76 3.02
2209 4165 4.261363 GCTGAAGGTCTTGGAAGAAACTTG 60.261 45.833 10.63 2.33 35.76 3.16
2210 4166 3.885901 GCTGAAGGTCTTGGAAGAAACTT 59.114 43.478 7.11 7.11 37.28 2.66
2356 4409 9.391006 GTTCCAGGAATATTACAGAACATTACA 57.609 33.333 20.60 0.00 33.91 2.41
2361 4414 7.685481 TCTTGTTCCAGGAATATTACAGAACA 58.315 34.615 22.80 22.80 40.06 3.18
2362 4415 8.738645 ATCTTGTTCCAGGAATATTACAGAAC 57.261 34.615 19.48 19.48 34.23 3.01
2364 4417 9.753674 AAAATCTTGTTCCAGGAATATTACAGA 57.246 29.630 4.80 2.89 0.00 3.41
2366 4419 9.753674 AGAAAATCTTGTTCCAGGAATATTACA 57.246 29.630 4.80 0.00 0.00 2.41
2368 4421 9.753674 ACAGAAAATCTTGTTCCAGGAATATTA 57.246 29.630 4.80 0.00 0.00 0.98
2369 4422 8.655935 ACAGAAAATCTTGTTCCAGGAATATT 57.344 30.769 4.80 1.13 0.00 1.28
2370 4423 8.655935 AACAGAAAATCTTGTTCCAGGAATAT 57.344 30.769 4.80 0.00 0.00 1.28
2371 4424 8.477419 AAACAGAAAATCTTGTTCCAGGAATA 57.523 30.769 4.80 0.00 0.00 1.75
2372 4425 6.983906 AACAGAAAATCTTGTTCCAGGAAT 57.016 33.333 4.80 0.00 0.00 3.01
2373 4426 6.379703 TGAAACAGAAAATCTTGTTCCAGGAA 59.620 34.615 0.00 0.00 0.00 3.36
2374 4427 5.890985 TGAAACAGAAAATCTTGTTCCAGGA 59.109 36.000 0.00 0.00 0.00 3.86
2375 4428 6.147864 TGAAACAGAAAATCTTGTTCCAGG 57.852 37.500 0.00 0.00 0.00 4.45
2376 4429 7.205297 ACATGAAACAGAAAATCTTGTTCCAG 58.795 34.615 0.00 0.00 30.11 3.86
2377 4430 7.111247 ACATGAAACAGAAAATCTTGTTCCA 57.889 32.000 0.00 0.00 30.11 3.53
2378 4431 8.424274 AAACATGAAACAGAAAATCTTGTTCC 57.576 30.769 0.00 0.00 39.24 3.62
2379 4432 9.305925 AGAAACATGAAACAGAAAATCTTGTTC 57.694 29.630 0.00 0.00 39.24 3.18
2380 4433 9.657419 AAGAAACATGAAACAGAAAATCTTGTT 57.343 25.926 0.00 0.00 40.81 2.83
2381 4434 9.657419 AAAGAAACATGAAACAGAAAATCTTGT 57.343 25.926 0.00 0.00 34.20 3.16
2382 4435 9.910511 CAAAGAAACATGAAACAGAAAATCTTG 57.089 29.630 0.00 0.00 0.00 3.02
2383 4436 9.101655 CCAAAGAAACATGAAACAGAAAATCTT 57.898 29.630 0.00 0.00 0.00 2.40
2384 4437 7.712205 CCCAAAGAAACATGAAACAGAAAATCT 59.288 33.333 0.00 0.00 0.00 2.40
2385 4438 7.710475 TCCCAAAGAAACATGAAACAGAAAATC 59.290 33.333 0.00 0.00 0.00 2.17
2386 4439 7.563906 TCCCAAAGAAACATGAAACAGAAAAT 58.436 30.769 0.00 0.00 0.00 1.82
2387 4440 6.940739 TCCCAAAGAAACATGAAACAGAAAA 58.059 32.000 0.00 0.00 0.00 2.29
2388 4441 6.379703 TCTCCCAAAGAAACATGAAACAGAAA 59.620 34.615 0.00 0.00 0.00 2.52
2389 4442 5.890985 TCTCCCAAAGAAACATGAAACAGAA 59.109 36.000 0.00 0.00 0.00 3.02
2390 4443 5.299279 GTCTCCCAAAGAAACATGAAACAGA 59.701 40.000 0.00 0.00 35.21 3.41
2391 4444 5.067674 TGTCTCCCAAAGAAACATGAAACAG 59.932 40.000 0.00 0.00 35.21 3.16
2392 4445 4.952957 TGTCTCCCAAAGAAACATGAAACA 59.047 37.500 0.00 0.00 35.21 2.83
2393 4446 5.514274 TGTCTCCCAAAGAAACATGAAAC 57.486 39.130 0.00 0.00 35.21 2.78
2394 4447 5.832595 TCATGTCTCCCAAAGAAACATGAAA 59.167 36.000 12.60 0.00 41.20 2.69
2395 4448 5.384336 TCATGTCTCCCAAAGAAACATGAA 58.616 37.500 12.60 0.00 41.20 2.57
2396 4449 4.984295 TCATGTCTCCCAAAGAAACATGA 58.016 39.130 11.32 11.32 41.57 3.07
2397 4450 5.710513 TTCATGTCTCCCAAAGAAACATG 57.289 39.130 7.32 7.32 38.74 3.21
2398 4451 5.835280 AGTTTCATGTCTCCCAAAGAAACAT 59.165 36.000 15.46 0.00 45.27 2.71
2399 4452 5.200483 AGTTTCATGTCTCCCAAAGAAACA 58.800 37.500 15.46 0.00 45.27 2.83
2400 4453 5.774498 AGTTTCATGTCTCCCAAAGAAAC 57.226 39.130 0.00 0.00 44.32 2.78
2401 4454 7.610305 GGTATAGTTTCATGTCTCCCAAAGAAA 59.390 37.037 0.00 0.00 35.21 2.52
2402 4455 7.110155 GGTATAGTTTCATGTCTCCCAAAGAA 58.890 38.462 0.00 0.00 35.21 2.52
2403 4456 6.214615 TGGTATAGTTTCATGTCTCCCAAAGA 59.785 38.462 0.00 0.00 0.00 2.52
2404 4457 6.414732 TGGTATAGTTTCATGTCTCCCAAAG 58.585 40.000 0.00 0.00 0.00 2.77
2405 4458 6.381498 TGGTATAGTTTCATGTCTCCCAAA 57.619 37.500 0.00 0.00 0.00 3.28
2406 4459 6.575244 ATGGTATAGTTTCATGTCTCCCAA 57.425 37.500 0.00 0.00 0.00 4.12
2407 4460 6.386927 AGAATGGTATAGTTTCATGTCTCCCA 59.613 38.462 0.00 0.00 0.00 4.37
2408 4461 6.831976 AGAATGGTATAGTTTCATGTCTCCC 58.168 40.000 0.00 0.00 0.00 4.30
2409 4462 9.429359 CATAGAATGGTATAGTTTCATGTCTCC 57.571 37.037 0.00 0.00 0.00 3.71
2410 4463 9.988815 ACATAGAATGGTATAGTTTCATGTCTC 57.011 33.333 0.00 0.00 33.60 3.36
2425 4478 9.125026 GGAACATTATTCTGAACATAGAATGGT 57.875 33.333 10.39 0.00 44.73 3.55
2426 4479 9.347240 AGGAACATTATTCTGAACATAGAATGG 57.653 33.333 10.39 4.12 44.73 3.16
2428 4481 9.347240 CCAGGAACATTATTCTGAACATAGAAT 57.653 33.333 6.30 6.30 46.27 2.40
2429 4482 8.548025 TCCAGGAACATTATTCTGAACATAGAA 58.452 33.333 0.00 0.00 40.65 2.10
2430 4483 8.089625 TCCAGGAACATTATTCTGAACATAGA 57.910 34.615 0.00 0.00 0.00 1.98
2431 4484 8.616076 GTTCCAGGAACATTATTCTGAACATAG 58.384 37.037 25.34 0.00 41.62 2.23
2432 4485 8.106462 TGTTCCAGGAACATTATTCTGAACATA 58.894 33.333 28.47 2.55 45.88 2.29
2433 4486 6.947733 TGTTCCAGGAACATTATTCTGAACAT 59.052 34.615 28.47 0.00 45.88 2.71
2434 4487 6.303054 TGTTCCAGGAACATTATTCTGAACA 58.697 36.000 28.47 4.35 45.88 3.18
2435 4488 6.817765 TGTTCCAGGAACATTATTCTGAAC 57.182 37.500 28.47 1.58 45.88 3.18
2447 4500 5.774498 ACAGAAAATCTTGTTCCAGGAAC 57.226 39.130 23.83 23.83 42.26 3.62
2448 4501 6.379703 TGAAACAGAAAATCTTGTTCCAGGAA 59.620 34.615 0.00 0.00 0.00 3.36
2449 4502 5.890985 TGAAACAGAAAATCTTGTTCCAGGA 59.109 36.000 0.00 0.00 0.00 3.86
2450 4503 6.147864 TGAAACAGAAAATCTTGTTCCAGG 57.852 37.500 0.00 0.00 0.00 4.45
2451 4504 7.205297 ACATGAAACAGAAAATCTTGTTCCAG 58.795 34.615 0.00 0.00 30.11 3.86
2452 4505 7.111247 ACATGAAACAGAAAATCTTGTTCCA 57.889 32.000 0.00 0.00 30.11 3.53
2453 4506 8.424274 AAACATGAAACAGAAAATCTTGTTCC 57.576 30.769 0.00 0.00 39.24 3.62
2454 4507 9.305925 AGAAACATGAAACAGAAAATCTTGTTC 57.694 29.630 0.00 0.00 39.24 3.18
2455 4508 9.657419 AAGAAACATGAAACAGAAAATCTTGTT 57.343 25.926 0.00 0.00 40.81 2.83
2456 4509 9.657419 AAAGAAACATGAAACAGAAAATCTTGT 57.343 25.926 0.00 0.00 34.20 3.16
2457 4510 9.910511 CAAAGAAACATGAAACAGAAAATCTTG 57.089 29.630 0.00 0.00 0.00 3.02
2458 4511 9.101655 CCAAAGAAACATGAAACAGAAAATCTT 57.898 29.630 0.00 0.00 0.00 2.40
2459 4512 7.712205 CCCAAAGAAACATGAAACAGAAAATCT 59.288 33.333 0.00 0.00 0.00 2.40
2460 4513 7.710475 TCCCAAAGAAACATGAAACAGAAAATC 59.290 33.333 0.00 0.00 0.00 2.17
2461 4514 7.563906 TCCCAAAGAAACATGAAACAGAAAAT 58.436 30.769 0.00 0.00 0.00 1.82
2493 4546 5.501156 AGTTTCTTCTGTTCCACTGTTTCT 58.499 37.500 0.00 0.00 0.00 2.52
2529 4582 5.915196 GTGAAGTGAACAATGGAAGTAAAGC 59.085 40.000 0.00 0.00 0.00 3.51
2530 4583 7.264373 AGTGAAGTGAACAATGGAAGTAAAG 57.736 36.000 0.00 0.00 0.00 1.85
2537 4590 6.166279 GTCATCTAGTGAAGTGAACAATGGA 58.834 40.000 0.00 0.00 38.90 3.41
2546 4599 3.254060 CAACGGGTCATCTAGTGAAGTG 58.746 50.000 0.00 0.00 38.90 3.16
2547 4600 2.353803 GCAACGGGTCATCTAGTGAAGT 60.354 50.000 0.00 0.00 38.90 3.01
2548 4601 2.271800 GCAACGGGTCATCTAGTGAAG 58.728 52.381 0.00 0.00 38.90 3.02
2602 4655 7.698836 ATGTTTTAATGCACACTCTTTCAAC 57.301 32.000 0.00 0.00 0.00 3.18
2660 4713 8.975295 ACGAATCATCTATCTATCATCAATCCA 58.025 33.333 0.00 0.00 0.00 3.41
2681 4734 9.599866 TCTTAGAAAACATGTATCATCACGAAT 57.400 29.630 0.00 0.00 0.00 3.34
2776 4831 5.835113 AAATAACACACCATGGAGTATGC 57.165 39.130 21.47 0.00 35.37 3.14
2825 4895 3.058914 GCCGGTGATATGAAATTCCGAAG 60.059 47.826 1.90 0.00 40.29 3.79
2863 4933 8.785329 TTTAAATTCAAATATGCCCCAAGTTC 57.215 30.769 0.00 0.00 0.00 3.01
2996 5066 7.094463 ACTCAGGATTAATTTCAGTGCTCAAAG 60.094 37.037 0.00 0.00 0.00 2.77
3094 5175 3.806949 ATTGGTCAGTAGCAAAGGGAA 57.193 42.857 0.00 0.00 45.56 3.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.