Multiple sequence alignment - TraesCS2B01G290000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G290000 chr2B 100.000 9204 0 0 1 9204 402377465 402368262 0.000000e+00 16997.0
1 TraesCS2B01G290000 chr2B 81.413 269 40 10 2229 2493 694244590 694244328 2.710000e-50 211.0
2 TraesCS2B01G290000 chr2B 92.157 51 2 2 3557 3606 197711137 197711088 4.790000e-08 71.3
3 TraesCS2B01G290000 chr2B 100.000 38 0 0 9533 9570 402367933 402367896 4.790000e-08 71.3
4 TraesCS2B01G290000 chr2A 95.303 3726 120 14 5034 8743 444789568 444785882 0.000000e+00 5860.0
5 TraesCS2B01G290000 chr2A 94.852 3108 78 18 743 3832 444797863 444794820 0.000000e+00 4778.0
6 TraesCS2B01G290000 chr2A 97.344 640 16 1 4400 5038 444792634 444791995 0.000000e+00 1086.0
7 TraesCS2B01G290000 chr2A 89.914 813 73 9 4541 5348 515951635 515952443 0.000000e+00 1038.0
8 TraesCS2B01G290000 chr2A 98.025 557 10 1 3818 4373 444793184 444792628 0.000000e+00 966.0
9 TraesCS2B01G290000 chr2A 86.855 601 47 11 4 582 444804447 444803857 2.250000e-180 643.0
10 TraesCS2B01G290000 chr2A 95.668 277 11 1 8741 9017 444785763 444785488 2.450000e-120 444.0
11 TraesCS2B01G290000 chr2D 94.031 2161 106 12 2957 5103 334096939 334094788 0.000000e+00 3254.0
12 TraesCS2B01G290000 chr2D 92.927 1230 52 20 375 1595 334100275 334099072 0.000000e+00 1757.0
13 TraesCS2B01G290000 chr2D 92.913 1143 63 15 8064 9198 334082834 334081702 0.000000e+00 1646.0
14 TraesCS2B01G290000 chr2D 92.935 1005 67 4 5689 6692 334086546 334085545 0.000000e+00 1459.0
15 TraesCS2B01G290000 chr2D 94.216 778 43 2 6799 7574 334085544 334084767 0.000000e+00 1186.0
16 TraesCS2B01G290000 chr2D 89.875 800 75 6 4552 5348 380416533 380417329 0.000000e+00 1024.0
17 TraesCS2B01G290000 chr2D 95.216 648 22 2 1744 2390 334099015 334098376 0.000000e+00 1016.0
18 TraesCS2B01G290000 chr2D 89.014 801 81 7 4552 5348 388833667 388834464 0.000000e+00 985.0
19 TraesCS2B01G290000 chr2D 87.578 805 92 6 4549 5346 331607110 331607913 0.000000e+00 926.0
20 TraesCS2B01G290000 chr2D 93.333 555 20 6 2397 2936 334097865 334097313 0.000000e+00 804.0
21 TraesCS2B01G290000 chr2D 90.826 545 45 4 5100 5643 334091973 334091433 0.000000e+00 725.0
22 TraesCS2B01G290000 chr2D 94.554 404 19 2 4 405 334100677 334100275 1.060000e-173 621.0
23 TraesCS2B01G290000 chr2D 94.059 202 12 0 7563 7764 334083227 334083026 3.360000e-79 307.0
24 TraesCS2B01G290000 chr2D 92.386 197 9 3 7807 8001 334083023 334082831 9.470000e-70 276.0
25 TraesCS2B01G290000 chr2D 88.776 98 2 7 7757 7851 75255102 75255011 2.830000e-20 111.0
26 TraesCS2B01G290000 chr2D 100.000 47 0 0 1643 1689 334099062 334099016 4.760000e-13 87.9
27 TraesCS2B01G290000 chr7D 88.677 786 71 14 4567 5348 369457998 369457227 0.000000e+00 942.0
28 TraesCS2B01G290000 chr7D 87.719 741 80 4 6246 6975 364748346 364747606 0.000000e+00 854.0
29 TraesCS2B01G290000 chr7D 82.427 239 33 7 2248 2481 383283251 383283017 5.860000e-47 200.0
30 TraesCS2B01G290000 chr7D 74.144 263 65 3 2231 2492 562886412 562886152 1.310000e-18 106.0
31 TraesCS2B01G290000 chr7D 91.781 73 6 0 6173 6245 291510814 291510742 1.700000e-17 102.0
32 TraesCS2B01G290000 chr4D 87.702 805 87 7 4552 5349 346468185 346467386 0.000000e+00 928.0
33 TraesCS2B01G290000 chr4D 87.912 91 3 6 7757 7845 346136150 346136066 6.120000e-17 100.0
34 TraesCS2B01G290000 chr4D 80.392 102 19 1 2231 2332 489751898 489751998 1.030000e-09 76.8
35 TraesCS2B01G290000 chr4D 73.094 223 51 9 2273 2492 380282175 380281959 4.790000e-08 71.3
36 TraesCS2B01G290000 chr5D 87.391 801 94 6 4552 5348 245202402 245201605 0.000000e+00 913.0
37 TraesCS2B01G290000 chr5D 78.030 264 53 5 2231 2492 499692089 499691829 2.770000e-35 161.0
38 TraesCS2B01G290000 chr5D 81.818 198 28 8 2228 2423 313221809 313222000 9.950000e-35 159.0
39 TraesCS2B01G290000 chr5D 87.619 105 6 5 7749 7850 528145968 528145868 2.180000e-21 115.0
40 TraesCS2B01G290000 chr4B 87.584 741 81 4 6246 6975 148995062 148995802 0.000000e+00 848.0
41 TraesCS2B01G290000 chr4B 86.910 741 86 4 6246 6975 149031287 149032027 0.000000e+00 821.0
42 TraesCS2B01G290000 chr4B 87.000 100 8 4 7757 7852 135215463 135215365 3.650000e-19 108.0
43 TraesCS2B01G290000 chr4B 86.869 99 4 4 7750 7845 631527868 631527776 1.700000e-17 102.0
44 TraesCS2B01G290000 chr4B 89.041 73 8 0 6173 6245 252008114 252008186 3.680000e-14 91.6
45 TraesCS2B01G290000 chr4B 72.180 266 61 13 2230 2492 240193196 240192941 1.720000e-07 69.4
46 TraesCS2B01G290000 chr4A 87.314 741 82 5 6246 6975 686121544 686120805 0.000000e+00 837.0
47 TraesCS2B01G290000 chr4A 84.810 158 17 7 2254 2408 11703164 11703011 1.660000e-32 152.0
48 TraesCS2B01G290000 chr3B 86.903 733 89 6 6246 6975 368092944 368093672 0.000000e+00 815.0
49 TraesCS2B01G290000 chr3B 86.235 741 90 5 6246 6975 299142412 299143151 0.000000e+00 793.0
50 TraesCS2B01G290000 chr3B 82.716 243 32 7 2242 2482 766634422 766634656 3.500000e-49 207.0
51 TraesCS2B01G290000 chr7B 86.767 733 91 6 6245 6975 7241893 7242621 0.000000e+00 811.0
52 TraesCS2B01G290000 chr7B 78.358 268 51 7 2230 2493 651494385 651494649 5.940000e-37 167.0
53 TraesCS2B01G290000 chr7B 74.740 289 65 7 10 294 22432423 22432139 1.310000e-23 122.0
54 TraesCS2B01G290000 chr7B 88.119 101 6 2 7757 7851 64413103 64413003 2.180000e-21 115.0
55 TraesCS2B01G290000 chr7B 86.364 110 7 5 7755 7862 639796285 639796182 7.860000e-21 113.0
56 TraesCS2B01G290000 chr7B 89.247 93 5 3 7757 7847 91957539 91957450 2.830000e-20 111.0
57 TraesCS2B01G290000 chr7B 88.298 94 3 5 7762 7850 567598662 567598572 1.310000e-18 106.0
58 TraesCS2B01G290000 chr7B 89.189 74 6 2 6173 6245 490602968 490603040 3.680000e-14 91.6
59 TraesCS2B01G290000 chr7B 79.167 120 18 6 2229 2345 686983268 686983383 1.030000e-09 76.8
60 TraesCS2B01G290000 chr6B 81.588 277 48 3 5 280 125355818 125355544 9.670000e-55 226.0
61 TraesCS2B01G290000 chr6B 89.899 99 3 4 7753 7845 553059084 553058987 4.690000e-23 121.0
62 TraesCS2B01G290000 chr6B 89.362 94 2 6 7754 7845 49553388 49553301 2.830000e-20 111.0
63 TraesCS2B01G290000 chr6B 79.114 158 28 5 2292 2448 525162694 525162847 4.730000e-18 104.0
64 TraesCS2B01G290000 chr6B 84.158 101 14 2 2233 2333 64857124 64857026 7.910000e-16 97.1
65 TraesCS2B01G290000 chr6B 90.411 73 7 0 6173 6245 377932131 377932203 7.910000e-16 97.1
66 TraesCS2B01G290000 chr6B 75.610 205 38 10 2225 2424 39176877 39177074 3.680000e-14 91.6
67 TraesCS2B01G290000 chr6B 73.529 272 55 15 2230 2494 544132182 544132443 4.760000e-13 87.9
68 TraesCS2B01G290000 chr5A 78.571 266 52 5 2230 2493 233632145 233632407 4.600000e-38 171.0
69 TraesCS2B01G290000 chr3D 83.069 189 28 3 2312 2500 592004780 592004964 1.650000e-37 169.0
70 TraesCS2B01G290000 chr5B 78.277 267 52 6 2229 2493 438167183 438166921 5.940000e-37 167.0
71 TraesCS2B01G290000 chr5B 77.734 256 51 5 2241 2494 397824650 397824399 1.660000e-32 152.0
72 TraesCS2B01G290000 chr5B 87.129 101 11 1 7754 7852 17982603 17982703 7.860000e-21 113.0
73 TraesCS2B01G290000 chr5B 86.792 106 9 5 7749 7850 664951665 664951561 7.860000e-21 113.0
74 TraesCS2B01G290000 chr5B 89.333 75 7 1 6172 6245 691854430 691854356 1.020000e-14 93.5
75 TraesCS2B01G290000 chr1A 84.713 157 21 3 2331 2486 541148319 541148473 4.630000e-33 154.0
76 TraesCS2B01G290000 chr1A 87.629 97 4 5 7756 7850 209362155 209362065 1.310000e-18 106.0
77 TraesCS2B01G290000 chr1A 85.149 101 12 2 7756 7853 321396831 321396731 6.120000e-17 100.0
78 TraesCS2B01G290000 chr1A 84.043 94 12 3 2300 2392 32525965 32525874 4.760000e-13 87.9
79 TraesCS2B01G290000 chr1A 73.469 245 54 10 2248 2487 464856224 464855986 2.220000e-11 82.4
80 TraesCS2B01G290000 chr1A 80.899 89 15 2 2391 2478 21238675 21238762 1.720000e-07 69.4
81 TraesCS2B01G290000 chr1D 82.738 168 23 6 2323 2486 445247980 445248145 2.790000e-30 145.0
82 TraesCS2B01G290000 chr1D 76.571 175 39 2 2257 2431 19800997 19801169 2.850000e-15 95.3
83 TraesCS2B01G290000 chr1D 83.146 89 14 1 2240 2328 398368612 398368525 7.970000e-11 80.5
84 TraesCS2B01G290000 chr1D 97.368 38 1 0 2359 2396 422986776 422986739 2.230000e-06 65.8
85 TraesCS2B01G290000 chr1D 81.818 77 12 2 2233 2309 388621987 388622061 8.020000e-06 63.9
86 TraesCS2B01G290000 chr1D 85.000 60 8 1 2241 2300 365984512 365984570 1.040000e-04 60.2
87 TraesCS2B01G290000 chr6D 77.561 205 40 6 2292 2494 402882310 402882110 1.690000e-22 119.0
88 TraesCS2B01G290000 chr6D 87.500 104 5 3 7754 7855 28032528 28032431 7.860000e-21 113.0
89 TraesCS2B01G290000 chr6D 90.123 81 7 1 7756 7836 386924869 386924948 4.730000e-18 104.0
90 TraesCS2B01G290000 chr6D 85.047 107 8 6 7754 7858 29232291 29232391 1.700000e-17 102.0
91 TraesCS2B01G290000 chr6D 87.097 93 9 3 7755 7845 245495195 245495104 1.700000e-17 102.0
92 TraesCS2B01G290000 chr6D 87.097 93 4 6 7755 7845 32646913 32646827 2.200000e-16 99.0
93 TraesCS2B01G290000 chr6D 89.041 73 8 0 6173 6245 211669713 211669785 3.680000e-14 91.6
94 TraesCS2B01G290000 chr6D 85.185 81 8 4 2265 2345 337847391 337847315 7.970000e-11 80.5
95 TraesCS2B01G290000 chr6D 85.333 75 10 1 2245 2318 353211643 353211717 1.030000e-09 76.8
96 TraesCS2B01G290000 chr1B 87.129 101 7 2 7757 7851 26096930 26096830 1.020000e-19 110.0
97 TraesCS2B01G290000 chr1B 75.785 223 38 15 2231 2448 148187362 148187151 2.200000e-16 99.0
98 TraesCS2B01G290000 chrUn 86.735 98 4 6 7756 7850 348315109 348315200 6.120000e-17 100.0
99 TraesCS2B01G290000 chrUn 86.735 98 4 7 7756 7850 377707851 377707942 6.120000e-17 100.0
100 TraesCS2B01G290000 chrUn 86.735 98 4 6 7756 7850 427230698 427230607 6.120000e-17 100.0
101 TraesCS2B01G290000 chrUn 84.694 98 12 2 7754 7849 46240434 46240338 2.850000e-15 95.3
102 TraesCS2B01G290000 chrUn 85.714 98 5 7 7756 7850 382593772 382593681 2.850000e-15 95.3
103 TraesCS2B01G290000 chrUn 85.870 92 5 4 7756 7845 37028996 37028911 3.680000e-14 91.6
104 TraesCS2B01G290000 chrUn 84.043 94 11 3 7756 7845 26701823 26701916 4.760000e-13 87.9
105 TraesCS2B01G290000 chrUn 96.226 53 2 0 7755 7807 377893913 377893861 4.760000e-13 87.9
106 TraesCS2B01G290000 chrUn 94.231 52 3 0 7756 7807 3346397 3346448 7.970000e-11 80.5
107 TraesCS2B01G290000 chr7A 90.667 75 7 0 6171 6245 326030815 326030741 6.120000e-17 100.0
108 TraesCS2B01G290000 chr6A 90.411 73 7 0 6173 6245 294644198 294644270 7.910000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G290000 chr2B 402367896 402377465 9569 True 8534.15 16997 100.000000 1 9570 2 chr2B.!!$R3 9569
1 TraesCS2B01G290000 chr2A 444785488 444797863 12375 True 2626.80 5860 96.238400 743 9017 5 chr2A.!!$R2 8274
2 TraesCS2B01G290000 chr2A 515951635 515952443 808 False 1038.00 1038 89.914000 4541 5348 1 chr2A.!!$F1 807
3 TraesCS2B01G290000 chr2A 444803857 444804447 590 True 643.00 643 86.855000 4 582 1 chr2A.!!$R1 578
4 TraesCS2B01G290000 chr2D 334091433 334100677 9244 True 1180.70 3254 94.412429 4 5643 7 chr2D.!!$R3 5639
5 TraesCS2B01G290000 chr2D 380416533 380417329 796 False 1024.00 1024 89.875000 4552 5348 1 chr2D.!!$F2 796
6 TraesCS2B01G290000 chr2D 388833667 388834464 797 False 985.00 985 89.014000 4552 5348 1 chr2D.!!$F3 796
7 TraesCS2B01G290000 chr2D 334081702 334086546 4844 True 974.80 1646 93.301800 5689 9198 5 chr2D.!!$R2 3509
8 TraesCS2B01G290000 chr2D 331607110 331607913 803 False 926.00 926 87.578000 4549 5346 1 chr2D.!!$F1 797
9 TraesCS2B01G290000 chr7D 369457227 369457998 771 True 942.00 942 88.677000 4567 5348 1 chr7D.!!$R3 781
10 TraesCS2B01G290000 chr7D 364747606 364748346 740 True 854.00 854 87.719000 6246 6975 1 chr7D.!!$R2 729
11 TraesCS2B01G290000 chr4D 346467386 346468185 799 True 928.00 928 87.702000 4552 5349 1 chr4D.!!$R2 797
12 TraesCS2B01G290000 chr5D 245201605 245202402 797 True 913.00 913 87.391000 4552 5348 1 chr5D.!!$R1 796
13 TraesCS2B01G290000 chr4B 148995062 148995802 740 False 848.00 848 87.584000 6246 6975 1 chr4B.!!$F1 729
14 TraesCS2B01G290000 chr4B 149031287 149032027 740 False 821.00 821 86.910000 6246 6975 1 chr4B.!!$F2 729
15 TraesCS2B01G290000 chr4A 686120805 686121544 739 True 837.00 837 87.314000 6246 6975 1 chr4A.!!$R2 729
16 TraesCS2B01G290000 chr3B 368092944 368093672 728 False 815.00 815 86.903000 6246 6975 1 chr3B.!!$F2 729
17 TraesCS2B01G290000 chr3B 299142412 299143151 739 False 793.00 793 86.235000 6246 6975 1 chr3B.!!$F1 729
18 TraesCS2B01G290000 chr7B 7241893 7242621 728 False 811.00 811 86.767000 6245 6975 1 chr7B.!!$F1 730

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
610 671 0.525761 AACATGGCGACCAAAATCCG 59.474 50.000 0.00 0.00 36.95 4.18 F
862 925 0.549950 CCCTCAGTCCAAGCATCCAT 59.450 55.000 0.00 0.00 0.00 3.41 F
1259 1323 1.152290 TGTACCACCCGAGGAACCA 60.152 57.895 0.00 0.00 0.00 3.67 F
1932 1998 3.010027 TGCCAATTTCAGTACCATCCTCA 59.990 43.478 0.00 0.00 0.00 3.86 F
3419 4358 1.247567 AATCTGGAACAAAGCCACCG 58.752 50.000 0.00 0.00 38.70 4.94 F
3629 4569 0.482446 TTGCAGTCCCTGTTCCCAAT 59.518 50.000 0.00 0.00 33.43 3.16 F
4100 6691 0.623723 TAAATCTCCACCCAGCCCAC 59.376 55.000 0.00 0.00 0.00 4.61 F
5110 12976 0.109597 CAAAAGCTAGGCGCCACTTG 60.110 55.000 31.54 17.06 40.39 3.16 F
5682 13548 0.170116 CGCAACAATGGCACCGTATT 59.830 50.000 0.00 0.00 0.00 1.89 F
5687 13553 0.526096 CAATGGCACCGTATTGCAGC 60.526 55.000 0.00 0.00 44.94 5.25 F
5771 13637 1.065491 ACTTGCCATTGTGCTATCCGA 60.065 47.619 0.00 0.00 0.00 4.55 F
6219 14086 1.410517 CGAGTAGCACCACATCATCCT 59.589 52.381 0.00 0.00 0.00 3.24 F
6791 14671 1.889829 CTAAGGCCTCTCCATACCTCG 59.110 57.143 5.23 0.00 37.29 4.63 F
8058 17572 0.475906 GCAGGCTCTCCATGGGTAAT 59.524 55.000 13.02 0.00 33.74 1.89 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1938 2004 0.036164 ACATACTGCAACGCCCTTGA 59.964 50.000 0.00 0.00 30.42 3.02 R
2646 3230 1.126948 TGACTGGCCACATGGACTCA 61.127 55.000 0.00 0.00 45.91 3.41 R
2648 3232 1.376466 GTGACTGGCCACATGGACT 59.624 57.895 0.00 0.00 45.91 3.85 R
3629 4569 1.543871 GGGGTAAGCCTGTTTCGTGAA 60.544 52.381 0.00 0.00 34.45 3.18 R
4910 7527 0.107459 GGCCTCACAAGACAGGATCC 60.107 60.000 2.48 2.48 30.32 3.36 R
5005 7622 0.248054 CCGCAATGTTGTATGGCGTC 60.248 55.000 7.75 0.00 45.70 5.19 R
5677 13543 0.392998 AAGGTCCTGGCTGCAATACG 60.393 55.000 0.50 0.00 0.00 3.06 R
6791 14671 0.915364 GCCCTGATCCTATCCCCATC 59.085 60.000 0.00 0.00 0.00 3.51 R
6802 14682 2.620585 GACAAAGCAATAGGCCCTGATC 59.379 50.000 0.00 0.00 46.50 2.92 R
7433 15314 4.220821 GGTGTGATAGTTCCTGAGTTCTCA 59.779 45.833 2.49 2.49 0.00 3.27 R
7598 17031 4.232221 CAACGACTCGTGGTAGTAACAAT 58.768 43.478 4.50 0.00 39.99 2.71 R
8039 17553 0.475906 ATTACCCATGGAGAGCCTGC 59.524 55.000 15.22 0.00 34.31 4.85 R
8386 17900 0.751643 ACACACCAGGAACCAACTGC 60.752 55.000 0.00 0.00 34.65 4.40 R
9100 18762 0.961019 TGATGCAGGTGACCAAAAGC 59.039 50.000 3.63 2.74 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 6.410853 CCTGATTTCCACCTTCATATTAGGGT 60.411 42.308 5.78 0.00 37.09 4.34
68 70 2.243810 TCAACACTAACCATTTGCCCC 58.756 47.619 0.00 0.00 0.00 5.80
104 106 8.072321 TGAGTGAATCTAGAGCTGATTTTAGT 57.928 34.615 0.00 0.00 34.67 2.24
143 145 9.231297 TGCAAACTAGCTTTCATAAGAATTAGT 57.769 29.630 0.00 0.00 31.83 2.24
177 181 7.563724 ACAAAGAGAAGGTTAGTAATGGGTA 57.436 36.000 0.00 0.00 0.00 3.69
205 209 3.714798 TCCCTACAAACTTTCACTCCTGT 59.285 43.478 0.00 0.00 0.00 4.00
294 298 1.348064 AGGTGACAACGGATCTTCCA 58.652 50.000 0.00 0.00 35.91 3.53
362 366 6.834168 ATGAAATTTACCCAATTCTCACGT 57.166 33.333 0.00 0.00 33.60 4.49
474 529 2.659428 AGAAGGCACAAAAGCACTCTT 58.341 42.857 0.00 0.00 35.83 2.85
475 530 2.360165 AGAAGGCACAAAAGCACTCTTG 59.640 45.455 0.00 0.00 35.83 3.02
476 531 2.057137 AGGCACAAAAGCACTCTTGA 57.943 45.000 0.00 0.00 35.83 3.02
477 532 1.952296 AGGCACAAAAGCACTCTTGAG 59.048 47.619 0.00 0.00 35.83 3.02
485 540 2.717639 AGCACTCTTGAGTGGTTTGT 57.282 45.000 24.27 0.00 46.76 2.83
570 628 7.595819 TCACAATGTTTAGAGGGACAAAATT 57.404 32.000 0.00 0.00 0.00 1.82
582 640 5.650283 AGGGACAAAATTAAGATCACCCAA 58.350 37.500 0.00 0.00 37.49 4.12
600 661 2.228582 CCAAGTGATCAAAACATGGCGA 59.771 45.455 0.00 0.00 30.41 5.54
607 668 3.742433 TCAAAACATGGCGACCAAAAT 57.258 38.095 0.00 0.00 36.95 1.82
610 671 0.525761 AACATGGCGACCAAAATCCG 59.474 50.000 0.00 0.00 36.95 4.18
612 673 1.001393 ATGGCGACCAAAATCCGGT 60.001 52.632 0.00 0.00 36.95 5.28
614 675 1.211709 GGCGACCAAAATCCGGTTG 59.788 57.895 0.00 0.00 40.44 3.77
624 685 3.897141 AAATCCGGTTGGTTTTTGTGT 57.103 38.095 0.00 0.00 34.22 3.72
625 686 3.897141 AATCCGGTTGGTTTTTGTGTT 57.103 38.095 0.00 0.00 36.30 3.32
626 687 2.656560 TCCGGTTGGTTTTTGTGTTG 57.343 45.000 0.00 0.00 36.30 3.33
627 688 1.204941 TCCGGTTGGTTTTTGTGTTGG 59.795 47.619 0.00 0.00 36.30 3.77
628 689 1.066787 CCGGTTGGTTTTTGTGTTGGT 60.067 47.619 0.00 0.00 0.00 3.67
629 690 2.613223 CCGGTTGGTTTTTGTGTTGGTT 60.613 45.455 0.00 0.00 0.00 3.67
630 691 3.067833 CGGTTGGTTTTTGTGTTGGTTT 58.932 40.909 0.00 0.00 0.00 3.27
631 692 3.120511 CGGTTGGTTTTTGTGTTGGTTTG 60.121 43.478 0.00 0.00 0.00 2.93
632 693 3.189495 GGTTGGTTTTTGTGTTGGTTTGG 59.811 43.478 0.00 0.00 0.00 3.28
633 694 3.771577 TGGTTTTTGTGTTGGTTTGGT 57.228 38.095 0.00 0.00 0.00 3.67
634 695 3.403038 TGGTTTTTGTGTTGGTTTGGTG 58.597 40.909 0.00 0.00 0.00 4.17
704 766 1.905843 CCCATTTGAACACCCCGCA 60.906 57.895 0.00 0.00 0.00 5.69
765 828 0.669318 CGCACCGCACCTTCTTCTAA 60.669 55.000 0.00 0.00 0.00 2.10
819 882 1.158434 CCGTGCCGCCTAACTTTTTA 58.842 50.000 0.00 0.00 0.00 1.52
844 907 2.760385 CTCCTCCTGTCCCCGTCC 60.760 72.222 0.00 0.00 0.00 4.79
862 925 0.549950 CCCTCAGTCCAAGCATCCAT 59.450 55.000 0.00 0.00 0.00 3.41
934 998 1.988406 ACGCTCTCCCCTTACCACC 60.988 63.158 0.00 0.00 0.00 4.61
994 1058 4.699522 GCGCGGGTCAAACCTCCT 62.700 66.667 8.83 0.00 38.64 3.69
1259 1323 1.152290 TGTACCACCCGAGGAACCA 60.152 57.895 0.00 0.00 0.00 3.67
1351 1415 3.691342 CGGCGTGGAGGGAGTTCA 61.691 66.667 0.00 0.00 0.00 3.18
1536 1600 5.921408 CGGTAAGATACTTCTAGCAATCACC 59.079 44.000 0.00 0.00 0.00 4.02
1548 1612 3.878778 AGCAATCACCCTTCTGATGTAC 58.121 45.455 0.00 0.00 30.92 2.90
1549 1613 3.521126 AGCAATCACCCTTCTGATGTACT 59.479 43.478 0.00 0.00 30.92 2.73
1550 1614 4.716784 AGCAATCACCCTTCTGATGTACTA 59.283 41.667 0.00 0.00 30.92 1.82
1551 1615 4.811557 GCAATCACCCTTCTGATGTACTAC 59.188 45.833 0.00 0.00 30.92 2.73
1552 1616 5.395768 GCAATCACCCTTCTGATGTACTACT 60.396 44.000 0.00 0.00 30.92 2.57
1553 1617 5.860941 ATCACCCTTCTGATGTACTACTG 57.139 43.478 0.00 0.00 29.23 2.74
1554 1618 4.673968 TCACCCTTCTGATGTACTACTGT 58.326 43.478 0.00 0.00 0.00 3.55
1555 1619 5.823312 TCACCCTTCTGATGTACTACTGTA 58.177 41.667 0.00 0.00 0.00 2.74
1556 1620 5.886474 TCACCCTTCTGATGTACTACTGTAG 59.114 44.000 13.13 13.13 0.00 2.74
1557 1621 5.652891 CACCCTTCTGATGTACTACTGTAGT 59.347 44.000 22.72 22.72 42.68 2.73
1558 1622 6.827251 CACCCTTCTGATGTACTACTGTAGTA 59.173 42.308 20.74 20.74 40.14 1.82
1570 1634 6.458232 ACTACTGTAGTATGCTCTTCCTTG 57.542 41.667 18.42 0.00 37.23 3.61
1704 1769 3.606595 TGCCTCTCAAGACTCAATGAG 57.393 47.619 8.98 8.98 43.51 2.90
1931 1997 3.378427 GTGCCAATTTCAGTACCATCCTC 59.622 47.826 0.00 0.00 0.00 3.71
1932 1998 3.010027 TGCCAATTTCAGTACCATCCTCA 59.990 43.478 0.00 0.00 0.00 3.86
1933 1999 4.016444 GCCAATTTCAGTACCATCCTCAA 58.984 43.478 0.00 0.00 0.00 3.02
1934 2000 4.096984 GCCAATTTCAGTACCATCCTCAAG 59.903 45.833 0.00 0.00 0.00 3.02
1935 2001 4.641989 CCAATTTCAGTACCATCCTCAAGG 59.358 45.833 0.00 0.00 0.00 3.61
2185 2251 4.017958 TGGCACCATATTTAAGAGGGTTGA 60.018 41.667 0.00 0.00 0.00 3.18
2208 2274 3.120304 GGTTAGTCAGAACGGTTGCATTC 60.120 47.826 0.00 0.00 0.00 2.67
2246 2312 9.110502 CCTTATTTAATACTCCCACTGTTTCTC 57.889 37.037 0.00 0.00 0.00 2.87
2753 3337 5.178067 GTGAAAAATATTGTTGCTTGCTGCT 59.822 36.000 0.00 0.00 43.37 4.24
2893 3478 7.566760 TTCTCGGCATATATTGTTGATTTGT 57.433 32.000 0.00 0.00 0.00 2.83
3066 4005 5.182001 GCACCTCAACTTTATTGATCACACT 59.818 40.000 0.00 0.00 0.00 3.55
3125 4064 6.372937 GCAGGAAAATTTCTAGAGTGTAGCTT 59.627 38.462 5.65 0.00 0.00 3.74
3419 4358 1.247567 AATCTGGAACAAAGCCACCG 58.752 50.000 0.00 0.00 38.70 4.94
3613 4553 8.615211 TCTAATATGACATCATCACTGTTTTGC 58.385 33.333 0.00 0.00 41.24 3.68
3629 4569 0.482446 TTGCAGTCCCTGTTCCCAAT 59.518 50.000 0.00 0.00 33.43 3.16
3769 4709 4.166011 GCTGGTTCGATGCGTGCC 62.166 66.667 0.00 0.00 0.00 5.01
3832 6422 4.664150 TGTTTTGTCCCTTGACCATTTC 57.336 40.909 0.00 0.00 41.01 2.17
3969 6559 2.409870 GCTTCACGGGGCATGGAAG 61.410 63.158 0.00 0.00 39.70 3.46
4100 6691 0.623723 TAAATCTCCACCCAGCCCAC 59.376 55.000 0.00 0.00 0.00 4.61
4545 7146 5.376625 TGATTGGGTGGAGCTATTATGTTC 58.623 41.667 0.00 0.00 0.00 3.18
4680 7289 1.998530 CACCCCTGTCCATGGCTAA 59.001 57.895 6.96 0.00 0.00 3.09
4809 7422 2.012673 CTATGCACTGGAGTTTCTGGC 58.987 52.381 0.00 0.00 0.00 4.85
4861 7475 4.988540 CAGACGATGTTGGACAAGTTTCTA 59.011 41.667 0.00 0.00 0.00 2.10
4910 7527 4.097892 TCATGTATATCATCATCCGGACCG 59.902 45.833 6.12 6.99 34.09 4.79
5005 7622 1.459592 CTTTTAGTCGGCCAACACTCG 59.540 52.381 2.24 0.00 0.00 4.18
5110 12976 0.109597 CAAAAGCTAGGCGCCACTTG 60.110 55.000 31.54 17.06 40.39 3.16
5120 12986 1.143838 CGCCACTTGATCCATCCGA 59.856 57.895 0.00 0.00 0.00 4.55
5399 13265 6.754178 AGGGAAGAGGAGTAGTATAGGTTTT 58.246 40.000 0.00 0.00 0.00 2.43
5409 13275 7.885399 GGAGTAGTATAGGTTTTATCTACCCGA 59.115 40.741 0.00 0.00 36.27 5.14
5424 13290 6.387041 TCTACCCGATGATATTATAAGGCG 57.613 41.667 0.00 0.00 0.00 5.52
5496 13362 4.817318 AAACAACCAGGCTTTTTCTTGA 57.183 36.364 0.00 0.00 0.00 3.02
5501 13367 4.790765 ACCAGGCTTTTTCTTGATAAGC 57.209 40.909 0.00 0.00 42.65 3.09
5521 13387 9.270576 GATAAGCGCAATAATGTCTAAATCATG 57.729 33.333 11.47 0.00 0.00 3.07
5585 13451 4.119273 GCACATTGCTACGATGCTCGTT 62.119 50.000 14.71 2.53 45.36 3.85
5610 13476 0.807667 CGCCTGTTCCTCTTGATCGG 60.808 60.000 0.00 0.00 0.00 4.18
5670 13536 2.813474 CCCTCGCGATCGCAACAA 60.813 61.111 36.45 18.90 42.06 2.83
5671 13537 2.173669 CCCTCGCGATCGCAACAAT 61.174 57.895 36.45 0.00 42.06 2.71
5672 13538 1.011904 CCTCGCGATCGCAACAATG 60.012 57.895 36.45 20.72 42.06 2.82
5673 13539 1.011904 CTCGCGATCGCAACAATGG 60.012 57.895 36.45 20.01 42.06 3.16
5674 13540 2.648724 CGCGATCGCAACAATGGC 60.649 61.111 36.45 7.13 42.06 4.40
5675 13541 2.484662 GCGATCGCAACAATGGCA 59.515 55.556 33.89 0.00 41.49 4.92
5676 13542 1.869132 GCGATCGCAACAATGGCAC 60.869 57.895 33.89 0.00 41.49 5.01
5677 13543 1.226379 CGATCGCAACAATGGCACC 60.226 57.895 0.26 0.00 0.00 5.01
5678 13544 1.226379 GATCGCAACAATGGCACCG 60.226 57.895 0.00 0.00 0.00 4.94
5679 13545 1.922135 GATCGCAACAATGGCACCGT 61.922 55.000 0.00 0.00 0.00 4.83
5680 13546 0.675208 ATCGCAACAATGGCACCGTA 60.675 50.000 0.00 0.00 0.00 4.02
5681 13547 0.675208 TCGCAACAATGGCACCGTAT 60.675 50.000 0.00 0.00 0.00 3.06
5682 13548 0.170116 CGCAACAATGGCACCGTATT 59.830 50.000 0.00 0.00 0.00 1.89
5683 13549 1.627879 GCAACAATGGCACCGTATTG 58.372 50.000 0.00 0.00 39.55 1.90
5684 13550 1.627879 CAACAATGGCACCGTATTGC 58.372 50.000 0.00 0.00 42.18 3.56
5685 13551 1.067985 CAACAATGGCACCGTATTGCA 60.068 47.619 0.00 0.00 44.94 4.08
5686 13552 0.810648 ACAATGGCACCGTATTGCAG 59.189 50.000 0.00 0.00 44.94 4.41
5687 13553 0.526096 CAATGGCACCGTATTGCAGC 60.526 55.000 0.00 0.00 44.94 5.25
5771 13637 1.065491 ACTTGCCATTGTGCTATCCGA 60.065 47.619 0.00 0.00 0.00 4.55
5887 13753 4.508124 CCAAGAAACGAGCTCATATACACC 59.492 45.833 15.40 0.00 0.00 4.16
6059 13925 9.143827 TCTACCCCTATAACCCATATACTACTT 57.856 37.037 0.00 0.00 0.00 2.24
6084 13950 6.382859 TGTGTTGGGTGTCATATACTACTCAT 59.617 38.462 0.00 0.00 0.00 2.90
6159 14025 8.632906 ACGGCTAATATATGTTAGAGTGTACT 57.367 34.615 20.01 0.00 34.34 2.73
6219 14086 1.410517 CGAGTAGCACCACATCATCCT 59.589 52.381 0.00 0.00 0.00 3.24
6335 14202 1.931172 ACTTGTTCGAACACTTGTCCG 59.069 47.619 29.74 14.00 38.92 4.79
6463 14330 6.065976 TCTCCAAGTCAATGAACACCATAT 57.934 37.500 0.00 0.00 34.45 1.78
6464 14331 7.194112 TCTCCAAGTCAATGAACACCATATA 57.806 36.000 0.00 0.00 34.45 0.86
6603 14481 4.594920 CCTCTTAATGGCTCTCTCCCATAA 59.405 45.833 0.00 0.00 42.10 1.90
6791 14671 1.889829 CTAAGGCCTCTCCATACCTCG 59.110 57.143 5.23 0.00 37.29 4.63
6802 14682 2.111384 CCATACCTCGATGGGGATAGG 58.889 57.143 0.00 0.00 42.46 2.57
7015 14895 5.896073 AGGAGCTGTTATGCTTATAACCT 57.104 39.130 0.00 0.00 44.17 3.50
7127 15007 4.858692 CGGTCCACATAAGAAAAGCAATTG 59.141 41.667 0.00 0.00 0.00 2.32
7341 15222 8.425703 GTCATAGATAAAGGAAGAAAGCTACCT 58.574 37.037 0.00 0.00 0.00 3.08
7433 15314 5.320549 ACTGAGTACGAATAAATCCACGT 57.679 39.130 0.00 0.00 41.66 4.49
7739 17172 2.037772 AGTTGGTCGAACATGAGAAGCT 59.962 45.455 2.76 0.00 36.98 3.74
7864 17299 8.890718 GGGAGTATTTCTTAAATGTTAGTGACC 58.109 37.037 0.00 0.00 32.38 4.02
8018 17532 8.520835 ACGTAGTACACATATATGCATTTCTG 57.479 34.615 12.79 2.43 41.94 3.02
8019 17533 8.357402 ACGTAGTACACATATATGCATTTCTGA 58.643 33.333 12.79 0.00 41.94 3.27
8020 17534 9.191995 CGTAGTACACATATATGCATTTCTGAA 57.808 33.333 12.79 0.00 0.00 3.02
8023 17537 9.565090 AGTACACATATATGCATTTCTGAATGT 57.435 29.630 12.79 7.84 43.67 2.71
8046 17560 2.604046 TTTTCCTATCTCGCAGGCTC 57.396 50.000 0.00 0.00 32.82 4.70
8047 17561 1.781786 TTTCCTATCTCGCAGGCTCT 58.218 50.000 0.00 0.00 32.82 4.09
8048 17562 1.323412 TTCCTATCTCGCAGGCTCTC 58.677 55.000 0.00 0.00 32.82 3.20
8049 17563 0.538516 TCCTATCTCGCAGGCTCTCC 60.539 60.000 0.00 0.00 32.82 3.71
8050 17564 0.825425 CCTATCTCGCAGGCTCTCCA 60.825 60.000 0.00 0.00 33.74 3.86
8051 17565 1.255882 CTATCTCGCAGGCTCTCCAT 58.744 55.000 0.00 0.00 33.74 3.41
8052 17566 0.964700 TATCTCGCAGGCTCTCCATG 59.035 55.000 0.00 0.00 33.74 3.66
8053 17567 1.756408 ATCTCGCAGGCTCTCCATGG 61.756 60.000 4.97 4.97 33.74 3.66
8054 17568 3.457625 CTCGCAGGCTCTCCATGGG 62.458 68.421 13.02 2.57 33.74 4.00
8055 17569 3.790437 CGCAGGCTCTCCATGGGT 61.790 66.667 13.02 0.00 33.74 4.51
8056 17570 2.434843 CGCAGGCTCTCCATGGGTA 61.435 63.158 13.02 0.00 33.74 3.69
8057 17571 1.915228 GCAGGCTCTCCATGGGTAA 59.085 57.895 13.02 0.00 33.74 2.85
8058 17572 0.475906 GCAGGCTCTCCATGGGTAAT 59.524 55.000 13.02 0.00 33.74 1.89
8059 17573 1.133668 GCAGGCTCTCCATGGGTAATT 60.134 52.381 13.02 0.00 33.74 1.40
8060 17574 2.856222 CAGGCTCTCCATGGGTAATTC 58.144 52.381 13.02 0.00 33.74 2.17
8061 17575 2.441001 CAGGCTCTCCATGGGTAATTCT 59.559 50.000 13.02 0.29 33.74 2.40
8062 17576 2.441001 AGGCTCTCCATGGGTAATTCTG 59.559 50.000 13.02 0.00 33.74 3.02
8063 17577 2.439507 GGCTCTCCATGGGTAATTCTGA 59.560 50.000 13.02 0.00 0.00 3.27
8064 17578 3.495806 GGCTCTCCATGGGTAATTCTGAG 60.496 52.174 13.02 7.94 0.00 3.35
8107 17621 1.302949 GCATGGCTGGGACAACCTA 59.697 57.895 0.00 0.00 46.40 3.08
8158 17672 2.225467 GCTGCTTACTCCATGGAATCC 58.775 52.381 17.00 3.44 0.00 3.01
8239 17753 5.579511 CGATCTACGTTACTTTGTTTGGGAT 59.420 40.000 0.00 0.00 37.22 3.85
8335 17849 1.813513 CAAGACGGTTTGCAGAGGAT 58.186 50.000 0.00 0.00 0.00 3.24
8521 18035 2.787249 CGGTTGAGGCGCTTCATG 59.213 61.111 23.70 12.28 0.00 3.07
8555 18069 3.895041 TCATATAAGAGGATGCACGGTCA 59.105 43.478 0.00 0.00 0.00 4.02
8623 18138 4.973168 TGTCAAGAGAGCAGTTAACCAAT 58.027 39.130 0.88 0.00 0.00 3.16
8814 18451 6.947464 ACATAGAATAGGTTACACTGCAGTT 58.053 36.000 18.94 11.49 26.50 3.16
8988 18625 7.745620 ACTTTAGGTGGTTCTTAAGACATTG 57.254 36.000 4.18 0.00 30.60 2.82
9007 18644 1.808531 GCAGCTGGTGGCATTTGTGA 61.809 55.000 17.12 0.00 44.79 3.58
9012 18649 2.548493 GCTGGTGGCATTTGTGACATTT 60.548 45.455 0.00 0.00 41.35 2.32
9017 18654 5.163364 TGGTGGCATTTGTGACATTTAGTTT 60.163 36.000 0.00 0.00 0.00 2.66
9018 18655 5.757808 GGTGGCATTTGTGACATTTAGTTTT 59.242 36.000 0.00 0.00 0.00 2.43
9019 18656 6.259829 GGTGGCATTTGTGACATTTAGTTTTT 59.740 34.615 0.00 0.00 0.00 1.94
9020 18657 7.125113 GTGGCATTTGTGACATTTAGTTTTTG 58.875 34.615 0.00 0.00 0.00 2.44
9021 18658 6.820656 TGGCATTTGTGACATTTAGTTTTTGT 59.179 30.769 0.00 0.00 0.00 2.83
9022 18659 7.335422 TGGCATTTGTGACATTTAGTTTTTGTT 59.665 29.630 0.00 0.00 0.00 2.83
9023 18660 8.180920 GGCATTTGTGACATTTAGTTTTTGTTT 58.819 29.630 0.00 0.00 0.00 2.83
9024 18661 9.553418 GCATTTGTGACATTTAGTTTTTGTTTT 57.447 25.926 0.00 0.00 0.00 2.43
9051 18688 5.893255 TGGAAAAGGGGTTATTGATCTGATG 59.107 40.000 0.00 0.00 0.00 3.07
9056 18693 7.881775 AAGGGGTTATTGATCTGATGTAAAC 57.118 36.000 0.00 0.00 0.00 2.01
9144 18806 0.378962 TGCGTTGTTTGTTTCCTCCG 59.621 50.000 0.00 0.00 0.00 4.63
9149 18811 3.671164 CGTTGTTTGTTTCCTCCGTTTGT 60.671 43.478 0.00 0.00 0.00 2.83
9165 18827 2.032681 GTGGCTCCACTGGGACAC 59.967 66.667 11.61 6.75 43.12 3.67
9198 18860 3.071479 GGCGAGTTAAAACAGATGGACA 58.929 45.455 0.00 0.00 0.00 4.02
9199 18861 3.689649 GGCGAGTTAAAACAGATGGACAT 59.310 43.478 0.00 0.00 0.00 3.06
9200 18862 4.873827 GGCGAGTTAAAACAGATGGACATA 59.126 41.667 0.00 0.00 0.00 2.29
9201 18863 5.353123 GGCGAGTTAAAACAGATGGACATAA 59.647 40.000 0.00 0.00 0.00 1.90
9202 18864 6.248631 GCGAGTTAAAACAGATGGACATAAC 58.751 40.000 0.00 0.00 0.00 1.89
9203 18865 6.674760 GCGAGTTAAAACAGATGGACATAACC 60.675 42.308 0.00 0.00 0.00 2.85
9558 19220 9.340695 TGAAATAATTGAAATCGACATTGACAC 57.659 29.630 0.00 0.00 0.00 3.67
9559 19221 8.687824 AAATAATTGAAATCGACATTGACACC 57.312 30.769 0.00 0.00 0.00 4.16
9560 19222 5.964958 AATTGAAATCGACATTGACACCT 57.035 34.783 0.00 0.00 0.00 4.00
9561 19223 5.964958 ATTGAAATCGACATTGACACCTT 57.035 34.783 0.00 0.00 0.00 3.50
9562 19224 7.447374 AATTGAAATCGACATTGACACCTTA 57.553 32.000 0.00 0.00 0.00 2.69
9563 19225 5.856126 TGAAATCGACATTGACACCTTAC 57.144 39.130 0.00 0.00 0.00 2.34
9564 19226 5.547465 TGAAATCGACATTGACACCTTACT 58.453 37.500 0.00 0.00 0.00 2.24
9565 19227 5.637810 TGAAATCGACATTGACACCTTACTC 59.362 40.000 0.00 0.00 0.00 2.59
9566 19228 4.801330 ATCGACATTGACACCTTACTCA 57.199 40.909 0.00 0.00 0.00 3.41
9567 19229 4.174411 TCGACATTGACACCTTACTCAG 57.826 45.455 0.00 0.00 0.00 3.35
9568 19230 3.824443 TCGACATTGACACCTTACTCAGA 59.176 43.478 0.00 0.00 0.00 3.27
9569 19231 3.921021 CGACATTGACACCTTACTCAGAC 59.079 47.826 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.732331 AATATGAAGGTGGAAATCAGGGA 57.268 39.130 0.00 0.00 0.00 4.20
2 3 6.006449 CCCTAATATGAAGGTGGAAATCAGG 58.994 44.000 4.18 0.00 31.70 3.86
68 70 0.957395 ATTCACTCAGTGCGGCCTTG 60.957 55.000 0.00 0.00 32.98 3.61
79 81 8.072321 ACTAAAATCAGCTCTAGATTCACTCA 57.928 34.615 0.00 0.00 34.78 3.41
81 83 9.196139 AGTACTAAAATCAGCTCTAGATTCACT 57.804 33.333 0.00 0.00 34.78 3.41
104 106 0.305313 GTTTGCACAACGCGGAAGTA 59.695 50.000 12.47 0.00 46.97 2.24
143 145 5.296151 ACCTTCTCTTTGTTGATGACTCA 57.704 39.130 0.00 0.00 0.00 3.41
177 181 2.378547 TGAAAGTTTGTAGGGATGGCCT 59.621 45.455 3.32 0.00 0.00 5.19
236 240 1.229464 AGAGGGGCTGACTGCTCTT 60.229 57.895 4.03 0.00 43.07 2.85
362 366 5.070047 GCAAAGAGGGTGTATACTAGGCTTA 59.930 44.000 4.17 0.00 0.00 3.09
448 503 5.560724 AGTGCTTTTGTGCCTTCTAGATTA 58.439 37.500 0.00 0.00 0.00 1.75
452 507 3.406764 AGAGTGCTTTTGTGCCTTCTAG 58.593 45.455 0.00 0.00 0.00 2.43
545 603 7.781324 ATTTTGTCCCTCTAAACATTGTGAT 57.219 32.000 0.00 0.00 0.00 3.06
582 640 1.812571 GGTCGCCATGTTTTGATCACT 59.187 47.619 0.00 0.00 0.00 3.41
587 645 3.553922 GGATTTTGGTCGCCATGTTTTGA 60.554 43.478 0.00 0.00 31.53 2.69
589 647 2.609244 CGGATTTTGGTCGCCATGTTTT 60.609 45.455 0.00 0.00 31.53 2.43
607 668 1.204941 CCAACACAAAAACCAACCGGA 59.795 47.619 9.46 0.00 35.59 5.14
610 671 3.189495 CCAAACCAACACAAAAACCAACC 59.811 43.478 0.00 0.00 0.00 3.77
612 673 3.815401 CACCAAACCAACACAAAAACCAA 59.185 39.130 0.00 0.00 0.00 3.67
614 675 3.403968 ACACCAAACCAACACAAAAACC 58.596 40.909 0.00 0.00 0.00 3.27
616 677 3.318017 CGACACCAAACCAACACAAAAA 58.682 40.909 0.00 0.00 0.00 1.94
619 680 0.811915 CCGACACCAAACCAACACAA 59.188 50.000 0.00 0.00 0.00 3.33
620 681 1.658686 GCCGACACCAAACCAACACA 61.659 55.000 0.00 0.00 0.00 3.72
624 685 1.313812 AAACGCCGACACCAAACCAA 61.314 50.000 0.00 0.00 0.00 3.67
625 686 1.749638 AAACGCCGACACCAAACCA 60.750 52.632 0.00 0.00 0.00 3.67
626 687 1.298788 CAAACGCCGACACCAAACC 60.299 57.895 0.00 0.00 0.00 3.27
627 688 0.863957 CACAAACGCCGACACCAAAC 60.864 55.000 0.00 0.00 0.00 2.93
628 689 1.306642 ACACAAACGCCGACACCAAA 61.307 50.000 0.00 0.00 0.00 3.28
629 690 1.306642 AACACAAACGCCGACACCAA 61.307 50.000 0.00 0.00 0.00 3.67
630 691 1.745864 AACACAAACGCCGACACCA 60.746 52.632 0.00 0.00 0.00 4.17
631 692 1.298041 CAACACAAACGCCGACACC 60.298 57.895 0.00 0.00 0.00 4.16
632 693 1.937362 GCAACACAAACGCCGACAC 60.937 57.895 0.00 0.00 0.00 3.67
633 694 2.405594 GCAACACAAACGCCGACA 59.594 55.556 0.00 0.00 0.00 4.35
634 695 2.353030 GGCAACACAAACGCCGAC 60.353 61.111 0.00 0.00 35.79 4.79
686 747 1.876497 CTGCGGGGTGTTCAAATGGG 61.876 60.000 0.00 0.00 0.00 4.00
704 766 1.923356 CATTTAGTTGTGGTGGGGCT 58.077 50.000 0.00 0.00 0.00 5.19
717 779 4.157840 GGGAAGTTACCAGTTGGCATTTAG 59.842 45.833 0.00 0.00 39.32 1.85
819 882 2.261729 GGGACAGGAGGAGAGAGTTTT 58.738 52.381 0.00 0.00 0.00 2.43
844 907 2.431954 AATGGATGCTTGGACTGAGG 57.568 50.000 0.00 0.00 0.00 3.86
862 925 0.390124 ACTAGTGCGTGGTTCGGAAA 59.610 50.000 0.00 0.00 42.24 3.13
914 978 1.077805 TGGTAAGGGGAGAGCGTGA 59.922 57.895 0.00 0.00 0.00 4.35
919 983 1.596496 AATGGGTGGTAAGGGGAGAG 58.404 55.000 0.00 0.00 0.00 3.20
934 998 1.024579 AACTGGAAGCGCGGTAATGG 61.025 55.000 12.91 5.46 37.60 3.16
994 1058 4.902443 TTGCACCGAGTTTCATGTTTTA 57.098 36.364 0.00 0.00 0.00 1.52
1259 1323 1.536418 TCCAGGTGCAGCAGGTACT 60.536 57.895 24.45 0.00 43.88 2.73
1536 1600 7.229707 AGCATACTACAGTAGTACATCAGAAGG 59.770 40.741 20.68 3.32 43.46 3.46
1548 1612 6.701145 TCAAGGAAGAGCATACTACAGTAG 57.299 41.667 6.00 6.00 33.52 2.57
1549 1613 6.607600 ACATCAAGGAAGAGCATACTACAGTA 59.392 38.462 0.00 0.00 34.67 2.74
1550 1614 5.423610 ACATCAAGGAAGAGCATACTACAGT 59.576 40.000 0.00 0.00 0.00 3.55
1551 1615 5.911752 ACATCAAGGAAGAGCATACTACAG 58.088 41.667 0.00 0.00 0.00 2.74
1552 1616 5.939764 ACATCAAGGAAGAGCATACTACA 57.060 39.130 0.00 0.00 0.00 2.74
1553 1617 8.718102 TTAAACATCAAGGAAGAGCATACTAC 57.282 34.615 0.00 0.00 0.00 2.73
1554 1618 9.905713 AATTAAACATCAAGGAAGAGCATACTA 57.094 29.630 0.00 0.00 0.00 1.82
1555 1619 8.814038 AATTAAACATCAAGGAAGAGCATACT 57.186 30.769 0.00 0.00 0.00 2.12
1616 1680 9.590451 CGAATACCAACTACACCTTTTTCTATA 57.410 33.333 0.00 0.00 0.00 1.31
1617 1681 8.098912 ACGAATACCAACTACACCTTTTTCTAT 58.901 33.333 0.00 0.00 0.00 1.98
1618 1682 7.385752 CACGAATACCAACTACACCTTTTTCTA 59.614 37.037 0.00 0.00 0.00 2.10
1619 1683 6.204108 CACGAATACCAACTACACCTTTTTCT 59.796 38.462 0.00 0.00 0.00 2.52
1620 1684 6.368213 CACGAATACCAACTACACCTTTTTC 58.632 40.000 0.00 0.00 0.00 2.29
1621 1685 5.239963 CCACGAATACCAACTACACCTTTTT 59.760 40.000 0.00 0.00 0.00 1.94
1622 1686 4.758165 CCACGAATACCAACTACACCTTTT 59.242 41.667 0.00 0.00 0.00 2.27
1635 1699 5.334879 GCAATCATAACCATCCACGAATACC 60.335 44.000 0.00 0.00 0.00 2.73
1636 1700 5.614668 CGCAATCATAACCATCCACGAATAC 60.615 44.000 0.00 0.00 0.00 1.89
1638 1702 3.250762 CGCAATCATAACCATCCACGAAT 59.749 43.478 0.00 0.00 0.00 3.34
1700 1765 4.691860 CGCAAGAAAGAAACCATCTCAT 57.308 40.909 0.00 0.00 37.01 2.90
1931 1997 1.856265 GCAACGCCCTTGACTCCTTG 61.856 60.000 0.00 0.00 30.42 3.61
1932 1998 1.600916 GCAACGCCCTTGACTCCTT 60.601 57.895 0.00 0.00 30.42 3.36
1933 1999 2.032681 GCAACGCCCTTGACTCCT 59.967 61.111 0.00 0.00 30.42 3.69
1934 2000 2.281484 TGCAACGCCCTTGACTCC 60.281 61.111 0.00 0.00 30.42 3.85
1935 2001 0.320421 TACTGCAACGCCCTTGACTC 60.320 55.000 0.00 0.00 30.42 3.36
1936 2002 0.324943 ATACTGCAACGCCCTTGACT 59.675 50.000 0.00 0.00 30.42 3.41
1937 2003 0.447801 CATACTGCAACGCCCTTGAC 59.552 55.000 0.00 0.00 30.42 3.18
1938 2004 0.036164 ACATACTGCAACGCCCTTGA 59.964 50.000 0.00 0.00 30.42 3.02
2169 2235 8.388656 TGACTAACCTCAACCCTCTTAAATAT 57.611 34.615 0.00 0.00 0.00 1.28
2185 2251 1.414919 TGCAACCGTTCTGACTAACCT 59.585 47.619 0.00 0.00 0.00 3.50
2437 3007 5.859205 AGATTTGCCTTCAGTCAAAGTTT 57.141 34.783 0.00 0.00 35.89 2.66
2646 3230 1.126948 TGACTGGCCACATGGACTCA 61.127 55.000 0.00 0.00 45.91 3.41
2648 3232 1.376466 GTGACTGGCCACATGGACT 59.624 57.895 0.00 0.00 45.91 3.85
2722 3306 9.206870 CAAGCAACAATATTTTTCACCATAACT 57.793 29.630 0.00 0.00 0.00 2.24
2753 3337 6.295123 GGAAAATGTGTACACTCCTACTGAGA 60.295 42.308 25.60 2.74 44.42 3.27
3066 4005 4.401519 CACTCTTTCCATCCGAGGTTACTA 59.598 45.833 0.00 0.00 0.00 1.82
3125 4064 3.709653 AGGGAACGAAACAGGATATAGCA 59.290 43.478 0.00 0.00 0.00 3.49
3387 4326 4.080807 TGTTCCAGATTTAATAGCACCGGA 60.081 41.667 9.46 0.00 0.00 5.14
3419 4358 5.296813 AGCACATAAAAGAACAATCGGTC 57.703 39.130 0.00 0.00 0.00 4.79
3547 4486 3.198853 AGATGAGCCTTAACAGTCCCTTC 59.801 47.826 0.00 0.00 0.00 3.46
3553 4492 5.658634 TCACATCTAGATGAGCCTTAACAGT 59.341 40.000 34.16 8.73 41.20 3.55
3620 4560 2.621055 CCTGTTTCGTGAATTGGGAACA 59.379 45.455 0.00 0.00 39.83 3.18
3629 4569 1.543871 GGGGTAAGCCTGTTTCGTGAA 60.544 52.381 0.00 0.00 34.45 3.18
3832 6422 2.975410 TTCTTTGTGCAGCTCAATCG 57.025 45.000 10.62 5.85 0.00 3.34
3969 6559 5.847111 AAAAAGTAAGAACCAGAACCACC 57.153 39.130 0.00 0.00 0.00 4.61
4100 6691 7.729836 TGATTCGTTTCGATGTCTTTCTTTAG 58.270 34.615 0.00 0.00 35.23 1.85
4389 6990 7.868775 TCATGAGCAAAATCTTAGTCATATGC 58.131 34.615 0.00 0.00 0.00 3.14
4545 7146 6.660887 AAAGGCTTTGTTGTTGTTTGTATG 57.339 33.333 12.53 0.00 0.00 2.39
4680 7289 6.332976 AGGACTGGAATATCACCAAAGAAT 57.667 37.500 3.72 0.00 36.95 2.40
4809 7422 3.592898 TGGGCATATACATGTAGAGCG 57.407 47.619 11.91 3.74 34.40 5.03
4861 7475 2.097110 TGGGGTAGCACCTATCGAAT 57.903 50.000 0.00 0.00 38.64 3.34
4910 7527 0.107459 GGCCTCACAAGACAGGATCC 60.107 60.000 2.48 2.48 30.32 3.36
5005 7622 0.248054 CCGCAATGTTGTATGGCGTC 60.248 55.000 7.75 0.00 45.70 5.19
5110 12976 3.808728 TGGAATCAAAGTCGGATGGATC 58.191 45.455 0.00 0.00 0.00 3.36
5120 12986 3.159213 TGTGAGCCATGGAATCAAAGT 57.841 42.857 18.40 0.00 0.00 2.66
5399 13265 7.722728 ACGCCTTATAATATCATCGGGTAGATA 59.277 37.037 0.00 0.00 37.52 1.98
5405 13271 5.457799 CGTTACGCCTTATAATATCATCGGG 59.542 44.000 0.00 0.00 0.00 5.14
5409 13275 6.927416 TGACCGTTACGCCTTATAATATCAT 58.073 36.000 0.00 0.00 0.00 2.45
5496 13362 8.239314 CCATGATTTAGACATTATTGCGCTTAT 58.761 33.333 9.73 4.77 0.00 1.73
5501 13367 5.473162 TCCCCATGATTTAGACATTATTGCG 59.527 40.000 0.00 0.00 0.00 4.85
5585 13451 2.104111 TCAAGAGGAACAGGCGAAGAAA 59.896 45.455 0.00 0.00 0.00 2.52
5610 13476 1.378514 TGCCGAGATTTCAAGGGGC 60.379 57.895 0.00 0.00 40.88 5.80
5666 13532 1.202114 CTGCAATACGGTGCCATTGTT 59.798 47.619 5.67 0.00 44.26 2.83
5668 13534 0.526096 GCTGCAATACGGTGCCATTG 60.526 55.000 0.00 0.00 44.26 2.82
5669 13535 1.666209 GGCTGCAATACGGTGCCATT 61.666 55.000 6.04 0.00 44.26 3.16
5670 13536 2.120909 GGCTGCAATACGGTGCCAT 61.121 57.895 6.04 0.00 44.26 4.40
5671 13537 2.749839 GGCTGCAATACGGTGCCA 60.750 61.111 6.04 0.00 44.26 4.92
5672 13538 2.749839 TGGCTGCAATACGGTGCC 60.750 61.111 0.50 4.02 44.26 5.01
5673 13539 2.764314 CCTGGCTGCAATACGGTGC 61.764 63.158 0.50 1.45 45.15 5.01
5674 13540 1.078497 TCCTGGCTGCAATACGGTG 60.078 57.895 0.50 0.00 0.00 4.94
5675 13541 1.078426 GTCCTGGCTGCAATACGGT 60.078 57.895 0.50 0.00 0.00 4.83
5676 13542 1.819632 GGTCCTGGCTGCAATACGG 60.820 63.158 0.50 0.00 0.00 4.02
5677 13543 0.392998 AAGGTCCTGGCTGCAATACG 60.393 55.000 0.50 0.00 0.00 3.06
5678 13544 1.098050 CAAGGTCCTGGCTGCAATAC 58.902 55.000 0.50 0.00 0.00 1.89
5679 13545 0.680921 GCAAGGTCCTGGCTGCAATA 60.681 55.000 11.43 0.00 34.87 1.90
5680 13546 1.980772 GCAAGGTCCTGGCTGCAAT 60.981 57.895 11.43 0.00 34.87 3.56
5681 13547 2.598394 GCAAGGTCCTGGCTGCAA 60.598 61.111 11.43 0.00 34.87 4.08
5682 13548 3.433984 TTGCAAGGTCCTGGCTGCA 62.434 57.895 19.45 15.51 42.79 4.41
5683 13549 2.598394 TTGCAAGGTCCTGGCTGC 60.598 61.111 19.45 13.01 30.50 5.25
5684 13550 2.270986 GGTTGCAAGGTCCTGGCTG 61.271 63.158 19.45 2.08 30.50 4.85
5685 13551 2.116125 GGTTGCAAGGTCCTGGCT 59.884 61.111 19.45 0.00 30.50 4.75
5686 13552 3.365265 CGGTTGCAAGGTCCTGGC 61.365 66.667 11.82 11.82 0.00 4.85
5687 13553 1.002134 ATCGGTTGCAAGGTCCTGG 60.002 57.895 0.00 0.00 0.00 4.45
5771 13637 2.696707 TCGAAAAGTGGTGAGGTAGTGT 59.303 45.455 0.00 0.00 0.00 3.55
5835 13701 4.679373 ATAGTTCTAGTGACCCAGCATG 57.321 45.455 0.00 0.00 0.00 4.06
5887 13753 4.036027 TCCTAACTCTTTAGTCGCATACGG 59.964 45.833 0.00 0.00 33.75 4.02
6059 13925 5.717654 TGAGTAGTATATGACACCCAACACA 59.282 40.000 0.00 0.00 0.00 3.72
6159 14025 9.939802 GGAAGTTAATAGAAGAGACCTTTTACA 57.060 33.333 0.00 0.00 31.62 2.41
6182 14049 2.430694 ACTCGATGATTGTCGGATGGAA 59.569 45.455 0.00 0.00 41.74 3.53
6183 14050 2.031870 ACTCGATGATTGTCGGATGGA 58.968 47.619 0.00 0.00 41.74 3.41
6219 14086 2.575735 TCCCATGGTGTATGCTCTTTGA 59.424 45.455 11.73 0.00 35.37 2.69
6335 14202 4.332543 TCAAGGACATGCACGATAATGTTC 59.667 41.667 0.00 0.00 37.15 3.18
6463 14330 5.724854 ACAGGTAGCAAAAGAAGGACCTATA 59.275 40.000 0.00 0.00 35.53 1.31
6464 14331 4.536489 ACAGGTAGCAAAAGAAGGACCTAT 59.464 41.667 0.00 0.00 35.53 2.57
6603 14481 3.881688 GCTGATGAGCCATACAATGAAGT 59.118 43.478 0.00 0.00 39.57 3.01
6791 14671 0.915364 GCCCTGATCCTATCCCCATC 59.085 60.000 0.00 0.00 0.00 3.51
6802 14682 2.620585 GACAAAGCAATAGGCCCTGATC 59.379 50.000 0.00 0.00 46.50 2.92
7015 14895 5.431765 GGAGATGCACTATTTTCTCTTGGA 58.568 41.667 11.46 0.00 35.90 3.53
7258 15139 6.554605 AGGAAAGAAAATGAAGAATGGGTTGA 59.445 34.615 0.00 0.00 0.00 3.18
7341 15222 4.574421 CCGACACATCAATGGCAAAGTATA 59.426 41.667 0.00 0.00 0.00 1.47
7433 15314 4.220821 GGTGTGATAGTTCCTGAGTTCTCA 59.779 45.833 2.49 2.49 0.00 3.27
7598 17031 4.232221 CAACGACTCGTGGTAGTAACAAT 58.768 43.478 4.50 0.00 39.99 2.71
7739 17172 5.249852 AGGAAGTACTAGCAAATGGGTACAA 59.750 40.000 0.00 0.00 37.55 2.41
7817 17250 6.456501 TCCCTCTAAAGAAATATAAGAGCGC 58.543 40.000 0.00 0.00 33.80 5.92
7854 17289 4.811969 ATTACGTGGATGGTCACTAACA 57.188 40.909 0.00 0.00 35.63 2.41
7864 17299 6.984474 ACACAAGTATCCTAATTACGTGGATG 59.016 38.462 13.20 2.52 40.43 3.51
7947 17382 4.083565 GGGGTGCCAATTGTAAGTTAAGA 58.916 43.478 4.43 0.00 0.00 2.10
8026 17540 2.501723 AGAGCCTGCGAGATAGGAAAAA 59.498 45.455 0.00 0.00 37.52 1.94
8027 17541 2.101582 GAGAGCCTGCGAGATAGGAAAA 59.898 50.000 0.00 0.00 37.52 2.29
8028 17542 1.683917 GAGAGCCTGCGAGATAGGAAA 59.316 52.381 0.00 0.00 37.52 3.13
8029 17543 1.323412 GAGAGCCTGCGAGATAGGAA 58.677 55.000 0.00 0.00 37.52 3.36
8030 17544 0.538516 GGAGAGCCTGCGAGATAGGA 60.539 60.000 0.00 0.00 37.52 2.94
8031 17545 0.825425 TGGAGAGCCTGCGAGATAGG 60.825 60.000 0.00 0.00 38.39 2.57
8032 17546 1.067706 CATGGAGAGCCTGCGAGATAG 60.068 57.143 0.00 0.00 34.31 2.08
8033 17547 0.964700 CATGGAGAGCCTGCGAGATA 59.035 55.000 0.00 0.00 34.31 1.98
8034 17548 1.747145 CATGGAGAGCCTGCGAGAT 59.253 57.895 0.00 0.00 34.31 2.75
8035 17549 2.429767 CCATGGAGAGCCTGCGAGA 61.430 63.158 5.56 0.00 34.31 4.04
8036 17550 2.108566 CCATGGAGAGCCTGCGAG 59.891 66.667 5.56 0.00 34.31 5.03
8037 17551 2.871795 TACCCATGGAGAGCCTGCGA 62.872 60.000 15.22 0.00 34.31 5.10
8038 17552 1.971505 TTACCCATGGAGAGCCTGCG 61.972 60.000 15.22 0.00 34.31 5.18
8039 17553 0.475906 ATTACCCATGGAGAGCCTGC 59.524 55.000 15.22 0.00 34.31 4.85
8040 17554 2.441001 AGAATTACCCATGGAGAGCCTG 59.559 50.000 15.22 0.00 34.31 4.85
8041 17555 2.441001 CAGAATTACCCATGGAGAGCCT 59.559 50.000 15.22 0.00 34.31 4.58
8042 17556 2.439507 TCAGAATTACCCATGGAGAGCC 59.560 50.000 15.22 0.00 0.00 4.70
8043 17557 3.135530 ACTCAGAATTACCCATGGAGAGC 59.864 47.826 15.22 0.00 0.00 4.09
8044 17558 5.011533 CCTACTCAGAATTACCCATGGAGAG 59.988 48.000 15.22 9.16 0.00 3.20
8045 17559 4.901849 CCTACTCAGAATTACCCATGGAGA 59.098 45.833 15.22 0.00 0.00 3.71
8046 17560 4.901849 TCCTACTCAGAATTACCCATGGAG 59.098 45.833 15.22 5.95 0.00 3.86
8047 17561 4.890988 TCCTACTCAGAATTACCCATGGA 58.109 43.478 15.22 0.00 0.00 3.41
8048 17562 5.131142 AGTTCCTACTCAGAATTACCCATGG 59.869 44.000 4.14 4.14 0.00 3.66
8049 17563 6.240549 AGTTCCTACTCAGAATTACCCATG 57.759 41.667 0.00 0.00 0.00 3.66
8050 17564 6.443849 TGAAGTTCCTACTCAGAATTACCCAT 59.556 38.462 0.00 0.00 31.99 4.00
8051 17565 5.783360 TGAAGTTCCTACTCAGAATTACCCA 59.217 40.000 0.00 0.00 31.99 4.51
8052 17566 6.070710 AGTGAAGTTCCTACTCAGAATTACCC 60.071 42.308 0.00 0.00 31.99 3.69
8053 17567 6.814146 CAGTGAAGTTCCTACTCAGAATTACC 59.186 42.308 0.00 0.00 31.99 2.85
8054 17568 7.603651 TCAGTGAAGTTCCTACTCAGAATTAC 58.396 38.462 0.00 0.00 31.99 1.89
8055 17569 7.776618 TCAGTGAAGTTCCTACTCAGAATTA 57.223 36.000 0.00 0.00 31.99 1.40
8056 17570 6.672266 TCAGTGAAGTTCCTACTCAGAATT 57.328 37.500 0.00 0.00 31.99 2.17
8057 17571 6.042093 TGTTCAGTGAAGTTCCTACTCAGAAT 59.958 38.462 5.62 0.00 31.99 2.40
8058 17572 5.362717 TGTTCAGTGAAGTTCCTACTCAGAA 59.637 40.000 5.62 0.00 31.99 3.02
8059 17573 4.893524 TGTTCAGTGAAGTTCCTACTCAGA 59.106 41.667 5.62 0.00 31.99 3.27
8060 17574 5.201713 TGTTCAGTGAAGTTCCTACTCAG 57.798 43.478 5.62 0.00 31.99 3.35
8061 17575 5.808366 ATGTTCAGTGAAGTTCCTACTCA 57.192 39.130 5.62 0.00 31.99 3.41
8062 17576 5.106908 GCAATGTTCAGTGAAGTTCCTACTC 60.107 44.000 5.62 0.00 31.99 2.59
8063 17577 4.757149 GCAATGTTCAGTGAAGTTCCTACT 59.243 41.667 5.62 0.00 35.68 2.57
8064 17578 4.377431 CGCAATGTTCAGTGAAGTTCCTAC 60.377 45.833 5.62 0.00 0.00 3.18
8107 17621 2.365635 ATCAGTAGCCTGCGGGGT 60.366 61.111 22.11 22.11 46.15 4.95
8158 17672 4.631131 TGCATATGACGGTCTGGAAATAG 58.369 43.478 6.97 0.00 0.00 1.73
8239 17753 2.787144 TCCAGCCCAGGAGGATCA 59.213 61.111 0.00 0.00 38.24 2.92
8282 17796 3.669536 TGCTGTTCACCATGTTATCGAA 58.330 40.909 0.00 0.00 0.00 3.71
8352 17866 3.827008 TCAGTAGCTCATCATCAACCC 57.173 47.619 0.00 0.00 0.00 4.11
8386 17900 0.751643 ACACACCAGGAACCAACTGC 60.752 55.000 0.00 0.00 34.65 4.40
8521 18035 9.806203 CATCCTCTTATATGAATGATCTCAGAC 57.194 37.037 0.00 0.00 0.00 3.51
8576 18090 0.984230 TTCCAGACTGGTGGTGGATC 59.016 55.000 21.06 0.00 40.11 3.36
8578 18092 1.351017 GAATTCCAGACTGGTGGTGGA 59.649 52.381 21.06 0.00 39.03 4.02
8623 18138 7.526608 CAGCGAAGAATGTGTTCCTTAAATTA 58.473 34.615 0.00 0.00 34.81 1.40
8988 18625 1.373748 CACAAATGCCACCAGCTGC 60.374 57.895 8.66 0.00 44.23 5.25
9023 18660 7.291182 TCAGATCAATAACCCCTTTTCCAAAAA 59.709 33.333 0.00 0.00 0.00 1.94
9024 18661 6.784969 TCAGATCAATAACCCCTTTTCCAAAA 59.215 34.615 0.00 0.00 0.00 2.44
9025 18662 6.318913 TCAGATCAATAACCCCTTTTCCAAA 58.681 36.000 0.00 0.00 0.00 3.28
9026 18663 5.898120 TCAGATCAATAACCCCTTTTCCAA 58.102 37.500 0.00 0.00 0.00 3.53
9027 18664 5.528600 TCAGATCAATAACCCCTTTTCCA 57.471 39.130 0.00 0.00 0.00 3.53
9028 18665 5.893824 ACATCAGATCAATAACCCCTTTTCC 59.106 40.000 0.00 0.00 0.00 3.13
9029 18666 8.519799 TTACATCAGATCAATAACCCCTTTTC 57.480 34.615 0.00 0.00 0.00 2.29
9030 18667 8.749354 GTTTACATCAGATCAATAACCCCTTTT 58.251 33.333 0.00 0.00 0.00 2.27
9031 18668 8.116026 AGTTTACATCAGATCAATAACCCCTTT 58.884 33.333 0.00 0.00 0.00 3.11
9032 18669 7.557719 CAGTTTACATCAGATCAATAACCCCTT 59.442 37.037 0.00 0.00 0.00 3.95
9033 18670 7.056635 CAGTTTACATCAGATCAATAACCCCT 58.943 38.462 0.00 0.00 0.00 4.79
9034 18671 6.828785 ACAGTTTACATCAGATCAATAACCCC 59.171 38.462 0.00 0.00 0.00 4.95
9035 18672 7.865706 ACAGTTTACATCAGATCAATAACCC 57.134 36.000 0.00 0.00 0.00 4.11
9036 18673 9.046296 CCTACAGTTTACATCAGATCAATAACC 57.954 37.037 0.00 0.00 0.00 2.85
9037 18674 9.601217 ACCTACAGTTTACATCAGATCAATAAC 57.399 33.333 0.00 0.00 0.00 1.89
9038 18675 9.599866 CACCTACAGTTTACATCAGATCAATAA 57.400 33.333 0.00 0.00 0.00 1.40
9039 18676 8.977412 TCACCTACAGTTTACATCAGATCAATA 58.023 33.333 0.00 0.00 0.00 1.90
9040 18677 7.851228 TCACCTACAGTTTACATCAGATCAAT 58.149 34.615 0.00 0.00 0.00 2.57
9041 18678 7.239763 TCACCTACAGTTTACATCAGATCAA 57.760 36.000 0.00 0.00 0.00 2.57
9042 18679 6.850752 TCACCTACAGTTTACATCAGATCA 57.149 37.500 0.00 0.00 0.00 2.92
9051 18688 5.449304 GTGCAAACATCACCTACAGTTTAC 58.551 41.667 0.00 0.00 33.30 2.01
9100 18762 0.961019 TGATGCAGGTGACCAAAAGC 59.039 50.000 3.63 2.74 0.00 3.51
9149 18811 3.625897 CGTGTCCCAGTGGAGCCA 61.626 66.667 11.95 0.56 42.85 4.75
9176 18838 3.071479 GTCCATCTGTTTTAACTCGCCA 58.929 45.455 0.00 0.00 0.00 5.69
9179 18841 6.772078 GGTTATGTCCATCTGTTTTAACTCG 58.228 40.000 0.00 0.00 0.00 4.18
9532 19194 9.340695 GTGTCAATGTCGATTTCAATTATTTCA 57.659 29.630 0.00 0.00 0.00 2.69
9533 19195 8.798153 GGTGTCAATGTCGATTTCAATTATTTC 58.202 33.333 0.00 0.00 0.00 2.17
9534 19196 8.522830 AGGTGTCAATGTCGATTTCAATTATTT 58.477 29.630 0.00 0.00 0.00 1.40
9535 19197 8.055279 AGGTGTCAATGTCGATTTCAATTATT 57.945 30.769 0.00 0.00 0.00 1.40
9536 19198 7.630242 AGGTGTCAATGTCGATTTCAATTAT 57.370 32.000 0.00 0.00 0.00 1.28
9537 19199 7.447374 AAGGTGTCAATGTCGATTTCAATTA 57.553 32.000 0.00 0.00 0.00 1.40
9538 19200 5.964958 AGGTGTCAATGTCGATTTCAATT 57.035 34.783 0.00 0.00 0.00 2.32
9539 19201 5.964958 AAGGTGTCAATGTCGATTTCAAT 57.035 34.783 0.00 0.00 0.00 2.57
9540 19202 5.995282 AGTAAGGTGTCAATGTCGATTTCAA 59.005 36.000 0.00 0.00 0.00 2.69
9541 19203 5.547465 AGTAAGGTGTCAATGTCGATTTCA 58.453 37.500 0.00 0.00 0.00 2.69
9542 19204 5.637810 TGAGTAAGGTGTCAATGTCGATTTC 59.362 40.000 0.00 0.00 0.00 2.17
9543 19205 5.547465 TGAGTAAGGTGTCAATGTCGATTT 58.453 37.500 0.00 0.00 0.00 2.17
9544 19206 5.047306 TCTGAGTAAGGTGTCAATGTCGATT 60.047 40.000 0.00 0.00 0.00 3.34
9545 19207 4.462834 TCTGAGTAAGGTGTCAATGTCGAT 59.537 41.667 0.00 0.00 0.00 3.59
9546 19208 3.824443 TCTGAGTAAGGTGTCAATGTCGA 59.176 43.478 0.00 0.00 0.00 4.20
9547 19209 3.921021 GTCTGAGTAAGGTGTCAATGTCG 59.079 47.826 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.