Multiple sequence alignment - TraesCS2B01G289200
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2B01G289200 | chr2B | 100.000 | 4479 | 0 | 0 | 1 | 4479 | 399929707 | 399934185 | 0.000000e+00 | 8272.0 |
1 | TraesCS2B01G289200 | chr2D | 93.195 | 3424 | 130 | 37 | 1100 | 4479 | 331734231 | 331737595 | 0.000000e+00 | 4937.0 |
2 | TraesCS2B01G289200 | chr2D | 91.013 | 790 | 64 | 7 | 1 | 788 | 472590791 | 472590007 | 0.000000e+00 | 1059.0 |
3 | TraesCS2B01G289200 | chr2D | 89.076 | 119 | 12 | 1 | 3996 | 4113 | 607675860 | 607675742 | 3.610000e-31 | 147.0 |
4 | TraesCS2B01G289200 | chr2D | 90.722 | 97 | 2 | 4 | 1013 | 1109 | 331734035 | 331734124 | 6.080000e-24 | 122.0 |
5 | TraesCS2B01G289200 | chr2A | 92.387 | 2417 | 131 | 29 | 1105 | 3498 | 439192949 | 439195335 | 0.000000e+00 | 3395.0 |
6 | TraesCS2B01G289200 | chr2A | 94.712 | 208 | 9 | 2 | 4270 | 4476 | 439199529 | 439199735 | 5.590000e-84 | 322.0 |
7 | TraesCS2B01G289200 | chr2A | 84.536 | 194 | 8 | 11 | 995 | 1168 | 439192737 | 439192928 | 5.960000e-39 | 172.0 |
8 | TraesCS2B01G289200 | chr2A | 91.379 | 58 | 5 | 0 | 842 | 899 | 20243203 | 20243260 | 3.710000e-11 | 80.5 |
9 | TraesCS2B01G289200 | chr5D | 91.635 | 789 | 62 | 3 | 1 | 788 | 434857658 | 434856873 | 0.000000e+00 | 1088.0 |
10 | TraesCS2B01G289200 | chr5D | 91.381 | 789 | 55 | 7 | 1 | 788 | 351637796 | 351638572 | 0.000000e+00 | 1068.0 |
11 | TraesCS2B01G289200 | chr7B | 91.392 | 790 | 60 | 6 | 1 | 788 | 492667075 | 492666292 | 0.000000e+00 | 1075.0 |
12 | TraesCS2B01G289200 | chr7B | 85.385 | 130 | 17 | 2 | 3997 | 4125 | 453316528 | 453316656 | 2.810000e-27 | 134.0 |
13 | TraesCS2B01G289200 | chr4D | 91.255 | 789 | 62 | 5 | 1 | 788 | 89446793 | 89446011 | 0.000000e+00 | 1068.0 |
14 | TraesCS2B01G289200 | chr7D | 91.327 | 784 | 63 | 5 | 6 | 788 | 168033748 | 168034527 | 0.000000e+00 | 1066.0 |
15 | TraesCS2B01G289200 | chr7D | 91.128 | 789 | 65 | 3 | 1 | 788 | 242759994 | 242759210 | 0.000000e+00 | 1064.0 |
16 | TraesCS2B01G289200 | chr3B | 91.128 | 789 | 63 | 6 | 1 | 788 | 155374522 | 155375304 | 0.000000e+00 | 1062.0 |
17 | TraesCS2B01G289200 | chr3B | 83.119 | 622 | 92 | 10 | 2039 | 2652 | 752491070 | 752491686 | 5.060000e-154 | 555.0 |
18 | TraesCS2B01G289200 | chr3B | 87.558 | 217 | 23 | 4 | 2845 | 3060 | 798221937 | 798221724 | 9.620000e-62 | 248.0 |
19 | TraesCS2B01G289200 | chr3B | 79.357 | 373 | 48 | 23 | 2909 | 3264 | 752492352 | 752492712 | 7.490000e-58 | 235.0 |
20 | TraesCS2B01G289200 | chr3B | 95.890 | 73 | 2 | 1 | 2860 | 2932 | 798225119 | 798225048 | 2.830000e-22 | 117.0 |
21 | TraesCS2B01G289200 | chr1D | 91.024 | 791 | 62 | 8 | 1 | 788 | 38475132 | 38474348 | 0.000000e+00 | 1059.0 |
22 | TraesCS2B01G289200 | chr1D | 83.810 | 210 | 30 | 3 | 3058 | 3264 | 425573526 | 425573734 | 3.530000e-46 | 196.0 |
23 | TraesCS2B01G289200 | chr3D | 83.361 | 613 | 85 | 12 | 2048 | 2652 | 564929342 | 564929945 | 6.550000e-153 | 551.0 |
24 | TraesCS2B01G289200 | chr3A | 89.535 | 172 | 15 | 3 | 3096 | 3264 | 699484513 | 699484684 | 9.760000e-52 | 215.0 |
25 | TraesCS2B01G289200 | chr6A | 89.916 | 119 | 11 | 1 | 3996 | 4113 | 144266676 | 144266558 | 7.760000e-33 | 152.0 |
26 | TraesCS2B01G289200 | chr6A | 86.567 | 67 | 9 | 0 | 842 | 908 | 608314282 | 608314348 | 1.730000e-09 | 75.0 |
27 | TraesCS2B01G289200 | chr6B | 89.256 | 121 | 8 | 4 | 3996 | 4113 | 205267344 | 205267226 | 3.610000e-31 | 147.0 |
28 | TraesCS2B01G289200 | chr4A | 90.090 | 111 | 10 | 1 | 3996 | 4106 | 157206829 | 157206938 | 4.670000e-30 | 143.0 |
29 | TraesCS2B01G289200 | chr4A | 86.567 | 67 | 9 | 0 | 842 | 908 | 366538993 | 366539059 | 1.730000e-09 | 75.0 |
30 | TraesCS2B01G289200 | chr6D | 85.714 | 119 | 16 | 1 | 3996 | 4113 | 115788449 | 115788331 | 1.690000e-24 | 124.0 |
31 | TraesCS2B01G289200 | chr4B | 85.714 | 119 | 15 | 2 | 3996 | 4113 | 19007507 | 19007624 | 1.690000e-24 | 124.0 |
32 | TraesCS2B01G289200 | chr4B | 88.235 | 68 | 5 | 2 | 841 | 907 | 629372749 | 629372684 | 1.340000e-10 | 78.7 |
33 | TraesCS2B01G289200 | chrUn | 83.846 | 130 | 17 | 4 | 3987 | 4113 | 29857405 | 29857277 | 2.190000e-23 | 121.0 |
34 | TraesCS2B01G289200 | chr5A | 89.552 | 67 | 7 | 0 | 842 | 908 | 504717320 | 504717386 | 7.980000e-13 | 86.1 |
35 | TraesCS2B01G289200 | chr5B | 87.324 | 71 | 7 | 2 | 839 | 908 | 663242169 | 663242238 | 3.710000e-11 | 80.5 |
36 | TraesCS2B01G289200 | chr1A | 90.164 | 61 | 6 | 0 | 845 | 905 | 512645261 | 512645321 | 3.710000e-11 | 80.5 |
37 | TraesCS2B01G289200 | chr1A | 87.500 | 64 | 8 | 0 | 845 | 908 | 565121761 | 565121698 | 1.730000e-09 | 75.0 |
38 | TraesCS2B01G289200 | chr1B | 87.500 | 64 | 8 | 0 | 845 | 908 | 148890100 | 148890037 | 1.730000e-09 | 75.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2B01G289200 | chr2B | 399929707 | 399934185 | 4478 | False | 8272.0 | 8272 | 100.0000 | 1 | 4479 | 1 | chr2B.!!$F1 | 4478 |
1 | TraesCS2B01G289200 | chr2D | 331734035 | 331737595 | 3560 | False | 2529.5 | 4937 | 91.9585 | 1013 | 4479 | 2 | chr2D.!!$F1 | 3466 |
2 | TraesCS2B01G289200 | chr2D | 472590007 | 472590791 | 784 | True | 1059.0 | 1059 | 91.0130 | 1 | 788 | 1 | chr2D.!!$R1 | 787 |
3 | TraesCS2B01G289200 | chr2A | 439192737 | 439195335 | 2598 | False | 1783.5 | 3395 | 88.4615 | 995 | 3498 | 2 | chr2A.!!$F3 | 2503 |
4 | TraesCS2B01G289200 | chr5D | 434856873 | 434857658 | 785 | True | 1088.0 | 1088 | 91.6350 | 1 | 788 | 1 | chr5D.!!$R1 | 787 |
5 | TraesCS2B01G289200 | chr5D | 351637796 | 351638572 | 776 | False | 1068.0 | 1068 | 91.3810 | 1 | 788 | 1 | chr5D.!!$F1 | 787 |
6 | TraesCS2B01G289200 | chr7B | 492666292 | 492667075 | 783 | True | 1075.0 | 1075 | 91.3920 | 1 | 788 | 1 | chr7B.!!$R1 | 787 |
7 | TraesCS2B01G289200 | chr4D | 89446011 | 89446793 | 782 | True | 1068.0 | 1068 | 91.2550 | 1 | 788 | 1 | chr4D.!!$R1 | 787 |
8 | TraesCS2B01G289200 | chr7D | 168033748 | 168034527 | 779 | False | 1066.0 | 1066 | 91.3270 | 6 | 788 | 1 | chr7D.!!$F1 | 782 |
9 | TraesCS2B01G289200 | chr7D | 242759210 | 242759994 | 784 | True | 1064.0 | 1064 | 91.1280 | 1 | 788 | 1 | chr7D.!!$R1 | 787 |
10 | TraesCS2B01G289200 | chr3B | 155374522 | 155375304 | 782 | False | 1062.0 | 1062 | 91.1280 | 1 | 788 | 1 | chr3B.!!$F1 | 787 |
11 | TraesCS2B01G289200 | chr3B | 752491070 | 752492712 | 1642 | False | 395.0 | 555 | 81.2380 | 2039 | 3264 | 2 | chr3B.!!$F2 | 1225 |
12 | TraesCS2B01G289200 | chr1D | 38474348 | 38475132 | 784 | True | 1059.0 | 1059 | 91.0240 | 1 | 788 | 1 | chr1D.!!$R1 | 787 |
13 | TraesCS2B01G289200 | chr3D | 564929342 | 564929945 | 603 | False | 551.0 | 551 | 83.3610 | 2048 | 2652 | 1 | chr3D.!!$F1 | 604 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
704 | 714 | 0.178767 | CCATTGAGATGCGTGAGGGA | 59.821 | 55.0 | 0.0 | 0.0 | 31.67 | 4.20 | F |
2038 | 2206 | 0.105408 | ACGGAAAACTGTAGCGGTGT | 59.895 | 50.0 | 0.0 | 0.0 | 0.00 | 4.16 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2087 | 2255 | 0.255890 | GCAGTAAGGATCCAGGCCAA | 59.744 | 55.0 | 15.82 | 0.0 | 0.0 | 4.52 | R |
4001 | 4683 | 0.107848 | CAAGTAATTCGGGGCGGAGT | 60.108 | 55.0 | 0.00 | 0.0 | 0.0 | 3.85 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
102 | 104 | 4.025979 | GTCTATCGTTTCGGTGCCATAAAG | 60.026 | 45.833 | 0.00 | 0.00 | 0.00 | 1.85 |
119 | 121 | 2.163818 | AAGATCAACAACGCCGAAGA | 57.836 | 45.000 | 0.00 | 0.00 | 0.00 | 2.87 |
163 | 165 | 7.807433 | TGAACGGTCAAAGAATCAAACATTATG | 59.193 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
197 | 199 | 8.947055 | AATCCCATAAATGTTGAAACTAATGC | 57.053 | 30.769 | 0.00 | 0.00 | 0.00 | 3.56 |
212 | 214 | 7.388224 | TGAAACTAATGCTATTGACACCGTAAA | 59.612 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
240 | 242 | 5.785940 | AGAGGAGTACATAAGGGACACTTTT | 59.214 | 40.000 | 0.00 | 0.00 | 40.64 | 2.27 |
334 | 337 | 8.735315 | TCAAATAGCAATTTTTCTCCGTATTGA | 58.265 | 29.630 | 0.00 | 0.00 | 32.87 | 2.57 |
471 | 478 | 4.459089 | GTGCCCTCTGGACTCCGC | 62.459 | 72.222 | 0.00 | 0.00 | 0.00 | 5.54 |
492 | 499 | 4.642953 | GCTTTCTTGCACGATACTTCTTC | 58.357 | 43.478 | 0.00 | 0.00 | 0.00 | 2.87 |
580 | 587 | 3.178267 | TGCTTTTGTTTCGAGCTGTTTG | 58.822 | 40.909 | 0.00 | 0.00 | 37.32 | 2.93 |
612 | 620 | 5.697473 | TCTAGATCATCATGACGTCTTCC | 57.303 | 43.478 | 17.92 | 0.00 | 0.00 | 3.46 |
617 | 627 | 0.532573 | ATCATGACGTCTTCCAGCGT | 59.467 | 50.000 | 17.92 | 0.00 | 44.50 | 5.07 |
704 | 714 | 0.178767 | CCATTGAGATGCGTGAGGGA | 59.821 | 55.000 | 0.00 | 0.00 | 31.67 | 4.20 |
734 | 744 | 1.811266 | CTGCGATGTTGAGGGACCG | 60.811 | 63.158 | 0.00 | 0.00 | 0.00 | 4.79 |
741 | 751 | 2.038975 | TTGAGGGACCGAGGAGGG | 59.961 | 66.667 | 0.00 | 0.00 | 46.96 | 4.30 |
765 | 775 | 1.000163 | GAAGCGTGGAGACAAGACTCA | 60.000 | 52.381 | 0.00 | 0.00 | 46.06 | 3.41 |
768 | 778 | 2.037772 | AGCGTGGAGACAAGACTCAAAT | 59.962 | 45.455 | 0.00 | 0.00 | 46.06 | 2.32 |
788 | 798 | 7.495901 | TCAAATCAATGGAGCAACAAGTTTTA | 58.504 | 30.769 | 0.00 | 0.00 | 0.00 | 1.52 |
789 | 799 | 7.652909 | TCAAATCAATGGAGCAACAAGTTTTAG | 59.347 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
790 | 800 | 6.899393 | ATCAATGGAGCAACAAGTTTTAGA | 57.101 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
791 | 801 | 6.317789 | TCAATGGAGCAACAAGTTTTAGAG | 57.682 | 37.500 | 0.00 | 0.00 | 0.00 | 2.43 |
792 | 802 | 6.061441 | TCAATGGAGCAACAAGTTTTAGAGA | 58.939 | 36.000 | 0.00 | 0.00 | 0.00 | 3.10 |
793 | 803 | 6.205464 | TCAATGGAGCAACAAGTTTTAGAGAG | 59.795 | 38.462 | 0.00 | 0.00 | 0.00 | 3.20 |
794 | 804 | 4.389374 | TGGAGCAACAAGTTTTAGAGAGG | 58.611 | 43.478 | 0.00 | 0.00 | 0.00 | 3.69 |
795 | 805 | 3.753797 | GGAGCAACAAGTTTTAGAGAGGG | 59.246 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
796 | 806 | 4.505039 | GGAGCAACAAGTTTTAGAGAGGGA | 60.505 | 45.833 | 0.00 | 0.00 | 0.00 | 4.20 |
797 | 807 | 4.646572 | AGCAACAAGTTTTAGAGAGGGAG | 58.353 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
798 | 808 | 4.348168 | AGCAACAAGTTTTAGAGAGGGAGA | 59.652 | 41.667 | 0.00 | 0.00 | 0.00 | 3.71 |
799 | 809 | 4.693095 | GCAACAAGTTTTAGAGAGGGAGAG | 59.307 | 45.833 | 0.00 | 0.00 | 0.00 | 3.20 |
800 | 810 | 5.511545 | GCAACAAGTTTTAGAGAGGGAGAGA | 60.512 | 44.000 | 0.00 | 0.00 | 0.00 | 3.10 |
801 | 811 | 5.993748 | ACAAGTTTTAGAGAGGGAGAGAG | 57.006 | 43.478 | 0.00 | 0.00 | 0.00 | 3.20 |
802 | 812 | 5.646215 | ACAAGTTTTAGAGAGGGAGAGAGA | 58.354 | 41.667 | 0.00 | 0.00 | 0.00 | 3.10 |
803 | 813 | 5.714806 | ACAAGTTTTAGAGAGGGAGAGAGAG | 59.285 | 44.000 | 0.00 | 0.00 | 0.00 | 3.20 |
804 | 814 | 5.789574 | AGTTTTAGAGAGGGAGAGAGAGA | 57.210 | 43.478 | 0.00 | 0.00 | 0.00 | 3.10 |
805 | 815 | 6.341408 | AGTTTTAGAGAGGGAGAGAGAGAT | 57.659 | 41.667 | 0.00 | 0.00 | 0.00 | 2.75 |
806 | 816 | 6.741724 | AGTTTTAGAGAGGGAGAGAGAGATT | 58.258 | 40.000 | 0.00 | 0.00 | 0.00 | 2.40 |
807 | 817 | 6.607198 | AGTTTTAGAGAGGGAGAGAGAGATTG | 59.393 | 42.308 | 0.00 | 0.00 | 0.00 | 2.67 |
808 | 818 | 3.600448 | AGAGAGGGAGAGAGAGATTGG | 57.400 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
809 | 819 | 1.963515 | GAGAGGGAGAGAGAGATTGGC | 59.036 | 57.143 | 0.00 | 0.00 | 0.00 | 4.52 |
810 | 820 | 1.047801 | GAGGGAGAGAGAGATTGGCC | 58.952 | 60.000 | 0.00 | 0.00 | 0.00 | 5.36 |
811 | 821 | 0.399806 | AGGGAGAGAGAGATTGGCCC | 60.400 | 60.000 | 0.00 | 0.00 | 0.00 | 5.80 |
812 | 822 | 1.414866 | GGGAGAGAGAGATTGGCCCC | 61.415 | 65.000 | 0.00 | 0.00 | 0.00 | 5.80 |
813 | 823 | 0.692419 | GGAGAGAGAGATTGGCCCCA | 60.692 | 60.000 | 0.00 | 0.00 | 0.00 | 4.96 |
814 | 824 | 1.207791 | GAGAGAGAGATTGGCCCCAA | 58.792 | 55.000 | 0.00 | 1.67 | 40.47 | 4.12 |
815 | 825 | 1.140652 | GAGAGAGAGATTGGCCCCAAG | 59.859 | 57.143 | 0.00 | 0.00 | 39.47 | 3.61 |
816 | 826 | 0.182299 | GAGAGAGATTGGCCCCAAGG | 59.818 | 60.000 | 0.00 | 0.00 | 39.47 | 3.61 |
817 | 827 | 0.551131 | AGAGAGATTGGCCCCAAGGT | 60.551 | 55.000 | 0.00 | 0.00 | 39.47 | 3.50 |
818 | 828 | 0.394899 | GAGAGATTGGCCCCAAGGTG | 60.395 | 60.000 | 0.00 | 0.00 | 39.47 | 4.00 |
819 | 829 | 1.142688 | AGAGATTGGCCCCAAGGTGT | 61.143 | 55.000 | 0.00 | 0.00 | 39.47 | 4.16 |
820 | 830 | 0.681243 | GAGATTGGCCCCAAGGTGTC | 60.681 | 60.000 | 0.00 | 0.00 | 39.47 | 3.67 |
821 | 831 | 1.076549 | GATTGGCCCCAAGGTGTCA | 59.923 | 57.895 | 0.00 | 0.00 | 39.47 | 3.58 |
822 | 832 | 0.967380 | GATTGGCCCCAAGGTGTCAG | 60.967 | 60.000 | 0.00 | 0.00 | 39.47 | 3.51 |
823 | 833 | 2.445492 | ATTGGCCCCAAGGTGTCAGG | 62.445 | 60.000 | 0.00 | 0.00 | 39.47 | 3.86 |
824 | 834 | 3.256960 | GGCCCCAAGGTGTCAGGA | 61.257 | 66.667 | 0.00 | 0.00 | 34.57 | 3.86 |
825 | 835 | 2.840753 | GGCCCCAAGGTGTCAGGAA | 61.841 | 63.158 | 0.00 | 0.00 | 34.57 | 3.36 |
826 | 836 | 1.303643 | GCCCCAAGGTGTCAGGAAG | 60.304 | 63.158 | 0.00 | 0.00 | 34.57 | 3.46 |
827 | 837 | 1.303643 | CCCCAAGGTGTCAGGAAGC | 60.304 | 63.158 | 0.00 | 0.00 | 0.00 | 3.86 |
828 | 838 | 1.303643 | CCCAAGGTGTCAGGAAGCC | 60.304 | 63.158 | 0.00 | 0.00 | 0.00 | 4.35 |
829 | 839 | 1.763770 | CCAAGGTGTCAGGAAGCCT | 59.236 | 57.895 | 0.00 | 0.00 | 0.00 | 4.58 |
830 | 840 | 0.984230 | CCAAGGTGTCAGGAAGCCTA | 59.016 | 55.000 | 0.00 | 0.00 | 29.64 | 3.93 |
831 | 841 | 1.561542 | CCAAGGTGTCAGGAAGCCTAT | 59.438 | 52.381 | 0.00 | 0.00 | 29.64 | 2.57 |
832 | 842 | 2.025887 | CCAAGGTGTCAGGAAGCCTATT | 60.026 | 50.000 | 0.00 | 0.00 | 29.64 | 1.73 |
833 | 843 | 3.562176 | CCAAGGTGTCAGGAAGCCTATTT | 60.562 | 47.826 | 0.00 | 0.00 | 29.64 | 1.40 |
834 | 844 | 4.082125 | CAAGGTGTCAGGAAGCCTATTTT | 58.918 | 43.478 | 0.00 | 0.00 | 29.64 | 1.82 |
835 | 845 | 5.253330 | CAAGGTGTCAGGAAGCCTATTTTA | 58.747 | 41.667 | 0.00 | 0.00 | 29.64 | 1.52 |
836 | 846 | 4.844884 | AGGTGTCAGGAAGCCTATTTTAC | 58.155 | 43.478 | 0.00 | 0.00 | 29.64 | 2.01 |
837 | 847 | 3.945921 | GGTGTCAGGAAGCCTATTTTACC | 59.054 | 47.826 | 0.00 | 0.00 | 29.64 | 2.85 |
838 | 848 | 4.324331 | GGTGTCAGGAAGCCTATTTTACCT | 60.324 | 45.833 | 0.00 | 0.00 | 29.64 | 3.08 |
839 | 849 | 5.104652 | GGTGTCAGGAAGCCTATTTTACCTA | 60.105 | 44.000 | 0.00 | 0.00 | 29.64 | 3.08 |
840 | 850 | 6.409349 | GGTGTCAGGAAGCCTATTTTACCTAT | 60.409 | 42.308 | 0.00 | 0.00 | 29.64 | 2.57 |
841 | 851 | 7.054751 | GTGTCAGGAAGCCTATTTTACCTATT | 58.945 | 38.462 | 0.00 | 0.00 | 29.64 | 1.73 |
842 | 852 | 8.208903 | GTGTCAGGAAGCCTATTTTACCTATTA | 58.791 | 37.037 | 0.00 | 0.00 | 29.64 | 0.98 |
843 | 853 | 8.945193 | TGTCAGGAAGCCTATTTTACCTATTAT | 58.055 | 33.333 | 0.00 | 0.00 | 29.64 | 1.28 |
960 | 970 | 9.941664 | TTTCTCTACTTTATCGTTTATCCTACG | 57.058 | 33.333 | 0.00 | 0.00 | 40.23 | 3.51 |
961 | 971 | 8.668510 | TCTCTACTTTATCGTTTATCCTACGT | 57.331 | 34.615 | 0.00 | 0.00 | 39.84 | 3.57 |
962 | 972 | 8.554528 | TCTCTACTTTATCGTTTATCCTACGTG | 58.445 | 37.037 | 0.00 | 0.00 | 39.84 | 4.49 |
963 | 973 | 7.642669 | TCTACTTTATCGTTTATCCTACGTGG | 58.357 | 38.462 | 0.00 | 0.00 | 39.84 | 4.94 |
964 | 974 | 5.045872 | ACTTTATCGTTTATCCTACGTGGC | 58.954 | 41.667 | 0.00 | 0.00 | 39.84 | 5.01 |
965 | 975 | 4.652421 | TTATCGTTTATCCTACGTGGCA | 57.348 | 40.909 | 0.00 | 0.00 | 39.84 | 4.92 |
966 | 976 | 2.282701 | TCGTTTATCCTACGTGGCAC | 57.717 | 50.000 | 7.79 | 7.79 | 39.84 | 5.01 |
967 | 977 | 1.820519 | TCGTTTATCCTACGTGGCACT | 59.179 | 47.619 | 16.72 | 5.47 | 39.84 | 4.40 |
968 | 978 | 2.159338 | TCGTTTATCCTACGTGGCACTC | 60.159 | 50.000 | 16.72 | 0.00 | 39.84 | 3.51 |
969 | 979 | 2.416296 | CGTTTATCCTACGTGGCACTCA | 60.416 | 50.000 | 16.72 | 1.82 | 34.47 | 3.41 |
970 | 980 | 3.737047 | CGTTTATCCTACGTGGCACTCAT | 60.737 | 47.826 | 16.72 | 3.60 | 34.47 | 2.90 |
971 | 981 | 4.498513 | CGTTTATCCTACGTGGCACTCATA | 60.499 | 45.833 | 16.72 | 4.63 | 34.47 | 2.15 |
972 | 982 | 4.848562 | TTATCCTACGTGGCACTCATAG | 57.151 | 45.455 | 16.72 | 13.52 | 35.26 | 2.23 |
973 | 983 | 1.399714 | TCCTACGTGGCACTCATAGG | 58.600 | 55.000 | 23.34 | 23.34 | 32.11 | 2.57 |
974 | 984 | 1.064240 | TCCTACGTGGCACTCATAGGA | 60.064 | 52.381 | 25.93 | 25.93 | 35.72 | 2.94 |
975 | 985 | 1.964223 | CCTACGTGGCACTCATAGGAT | 59.036 | 52.381 | 24.31 | 2.92 | 32.41 | 3.24 |
976 | 986 | 3.154710 | CCTACGTGGCACTCATAGGATA | 58.845 | 50.000 | 24.31 | 3.73 | 32.41 | 2.59 |
977 | 987 | 3.191581 | CCTACGTGGCACTCATAGGATAG | 59.808 | 52.174 | 24.31 | 6.89 | 32.41 | 2.08 |
978 | 988 | 1.341531 | ACGTGGCACTCATAGGATAGC | 59.658 | 52.381 | 16.72 | 0.00 | 0.00 | 2.97 |
979 | 989 | 1.341209 | CGTGGCACTCATAGGATAGCA | 59.659 | 52.381 | 16.72 | 0.00 | 0.00 | 3.49 |
980 | 990 | 2.028658 | CGTGGCACTCATAGGATAGCAT | 60.029 | 50.000 | 16.72 | 0.00 | 0.00 | 3.79 |
981 | 991 | 3.594134 | GTGGCACTCATAGGATAGCATC | 58.406 | 50.000 | 11.13 | 0.00 | 0.00 | 3.91 |
982 | 992 | 3.007290 | GTGGCACTCATAGGATAGCATCA | 59.993 | 47.826 | 11.13 | 0.00 | 0.00 | 3.07 |
983 | 993 | 3.007290 | TGGCACTCATAGGATAGCATCAC | 59.993 | 47.826 | 4.05 | 0.00 | 0.00 | 3.06 |
984 | 994 | 3.260380 | GGCACTCATAGGATAGCATCACT | 59.740 | 47.826 | 4.05 | 0.00 | 0.00 | 3.41 |
985 | 995 | 4.464244 | GGCACTCATAGGATAGCATCACTA | 59.536 | 45.833 | 4.05 | 0.00 | 34.64 | 2.74 |
986 | 996 | 5.128499 | GGCACTCATAGGATAGCATCACTAT | 59.872 | 44.000 | 4.05 | 0.00 | 44.62 | 2.12 |
987 | 997 | 6.322456 | GGCACTCATAGGATAGCATCACTATA | 59.678 | 42.308 | 4.05 | 0.00 | 41.87 | 1.31 |
988 | 998 | 7.199766 | GCACTCATAGGATAGCATCACTATAC | 58.800 | 42.308 | 0.00 | 0.00 | 41.87 | 1.47 |
989 | 999 | 7.148000 | GCACTCATAGGATAGCATCACTATACA | 60.148 | 40.741 | 0.00 | 0.00 | 43.86 | 2.29 |
990 | 1000 | 8.911965 | CACTCATAGGATAGCATCACTATACAT | 58.088 | 37.037 | 0.00 | 0.00 | 43.86 | 2.29 |
991 | 1001 | 8.911965 | ACTCATAGGATAGCATCACTATACATG | 58.088 | 37.037 | 0.00 | 0.00 | 43.86 | 3.21 |
992 | 1002 | 8.242729 | TCATAGGATAGCATCACTATACATGG | 57.757 | 38.462 | 0.00 | 0.00 | 43.86 | 3.66 |
993 | 1003 | 5.350504 | AGGATAGCATCACTATACATGGC | 57.649 | 43.478 | 0.00 | 0.00 | 43.86 | 4.40 |
994 | 1004 | 4.163078 | AGGATAGCATCACTATACATGGCC | 59.837 | 45.833 | 0.00 | 0.00 | 43.86 | 5.36 |
995 | 1005 | 4.163078 | GGATAGCATCACTATACATGGCCT | 59.837 | 45.833 | 3.32 | 0.00 | 41.37 | 5.19 |
996 | 1006 | 3.692257 | AGCATCACTATACATGGCCTC | 57.308 | 47.619 | 3.32 | 0.00 | 0.00 | 4.70 |
997 | 1007 | 2.974794 | AGCATCACTATACATGGCCTCA | 59.025 | 45.455 | 3.32 | 0.00 | 0.00 | 3.86 |
998 | 1008 | 3.392285 | AGCATCACTATACATGGCCTCAA | 59.608 | 43.478 | 3.32 | 0.00 | 0.00 | 3.02 |
1042 | 1052 | 1.403814 | CAATAGACGGCCCAGAGAGA | 58.596 | 55.000 | 0.00 | 0.00 | 0.00 | 3.10 |
1044 | 1054 | 0.825840 | ATAGACGGCCCAGAGAGAGC | 60.826 | 60.000 | 0.00 | 0.00 | 0.00 | 4.09 |
1045 | 1055 | 2.211468 | TAGACGGCCCAGAGAGAGCA | 62.211 | 60.000 | 0.00 | 0.00 | 0.00 | 4.26 |
1183 | 1323 | 4.880537 | CTCAGCTGCGCTACCCGG | 62.881 | 72.222 | 9.47 | 0.00 | 36.40 | 5.73 |
1258 | 1399 | 1.340405 | CCATCAAGCACTAGCCTGGTT | 60.340 | 52.381 | 0.00 | 0.00 | 43.56 | 3.67 |
1592 | 1751 | 5.036737 | CCTTTAATCTGTTTATGCTTGCCG | 58.963 | 41.667 | 0.00 | 0.00 | 0.00 | 5.69 |
1606 | 1765 | 2.506444 | CTTGCCGTGGGGTACTTTTTA | 58.494 | 47.619 | 0.00 | 0.00 | 34.97 | 1.52 |
1634 | 1793 | 6.293004 | AGTTCTAACTTCTAGCTGCTTGAT | 57.707 | 37.500 | 14.23 | 3.12 | 35.21 | 2.57 |
1676 | 1835 | 2.953284 | ATCCTGGCTCCATGAATCTG | 57.047 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
1677 | 1836 | 0.182061 | TCCTGGCTCCATGAATCTGC | 59.818 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
1678 | 1837 | 0.183014 | CCTGGCTCCATGAATCTGCT | 59.817 | 55.000 | 0.00 | 0.00 | 0.00 | 4.24 |
1679 | 1838 | 1.419012 | CCTGGCTCCATGAATCTGCTA | 59.581 | 52.381 | 0.00 | 0.00 | 0.00 | 3.49 |
1684 | 1843 | 3.055240 | GGCTCCATGAATCTGCTAGCTAT | 60.055 | 47.826 | 17.23 | 6.80 | 0.00 | 2.97 |
1777 | 1940 | 5.490139 | TTGATTCATAGCAGCAAGTTAGC | 57.510 | 39.130 | 0.00 | 0.00 | 0.00 | 3.09 |
1993 | 2161 | 4.937201 | GAACAAGGGTGGTTCTTTGATT | 57.063 | 40.909 | 0.00 | 0.00 | 41.05 | 2.57 |
2035 | 2203 | 1.069500 | CCAAACGGAAAACTGTAGCGG | 60.069 | 52.381 | 0.00 | 0.00 | 0.00 | 5.52 |
2036 | 2204 | 1.600485 | CAAACGGAAAACTGTAGCGGT | 59.400 | 47.619 | 0.00 | 0.00 | 0.00 | 5.68 |
2037 | 2205 | 1.223187 | AACGGAAAACTGTAGCGGTG | 58.777 | 50.000 | 0.00 | 0.00 | 0.00 | 4.94 |
2038 | 2206 | 0.105408 | ACGGAAAACTGTAGCGGTGT | 59.895 | 50.000 | 0.00 | 0.00 | 0.00 | 4.16 |
2039 | 2207 | 0.511221 | CGGAAAACTGTAGCGGTGTG | 59.489 | 55.000 | 0.00 | 0.00 | 0.00 | 3.82 |
2040 | 2208 | 1.589803 | GGAAAACTGTAGCGGTGTGT | 58.410 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
2041 | 2209 | 2.758009 | GGAAAACTGTAGCGGTGTGTA | 58.242 | 47.619 | 0.00 | 0.00 | 0.00 | 2.90 |
2042 | 2210 | 2.477754 | GGAAAACTGTAGCGGTGTGTAC | 59.522 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2043 | 2211 | 3.387397 | GAAAACTGTAGCGGTGTGTACT | 58.613 | 45.455 | 0.00 | 0.00 | 0.00 | 2.73 |
2044 | 2212 | 3.464111 | AAACTGTAGCGGTGTGTACTT | 57.536 | 42.857 | 0.00 | 0.00 | 0.00 | 2.24 |
2059 | 2227 | 6.245724 | GTGTGTACTTGTGTGTACTTTTGAC | 58.754 | 40.000 | 6.41 | 0.00 | 42.22 | 3.18 |
2111 | 2284 | 1.952296 | CCTGGATCCTTACTGCATTGC | 59.048 | 52.381 | 14.23 | 0.46 | 0.00 | 3.56 |
2165 | 2339 | 6.594284 | TTGATCATCGTTCATCTTCATGAC | 57.406 | 37.500 | 0.00 | 0.00 | 38.86 | 3.06 |
2205 | 2379 | 1.176619 | GGGGCGCAAGTGGTTTTACT | 61.177 | 55.000 | 10.83 | 0.00 | 41.68 | 2.24 |
2249 | 2423 | 3.054361 | GGTACATGGTGATGGAGGTCTTT | 60.054 | 47.826 | 0.00 | 0.00 | 33.39 | 2.52 |
2449 | 2623 | 0.818296 | TGTTTGGGGTGTGTTTTCCG | 59.182 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2778 | 3435 | 4.574013 | GCAATCACATGACCTCCTTTCTAG | 59.426 | 45.833 | 0.00 | 0.00 | 0.00 | 2.43 |
3007 | 3679 | 5.411977 | GCTCATCCTCATATCCTTTGATGTG | 59.588 | 44.000 | 0.00 | 0.00 | 40.41 | 3.21 |
3024 | 3696 | 6.677781 | TGATGTGCTAGTTATTTTACTGCC | 57.322 | 37.500 | 0.00 | 0.00 | 0.00 | 4.85 |
3056 | 3729 | 2.153366 | AAGAATGTTTTGCAAGGCCG | 57.847 | 45.000 | 0.00 | 0.00 | 0.00 | 6.13 |
3322 | 4003 | 2.096406 | CGGCATTGTCGTTGCTCG | 59.904 | 61.111 | 1.71 | 0.00 | 40.03 | 5.03 |
3343 | 4025 | 2.256461 | CAAGGCGCCACAAGAAGC | 59.744 | 61.111 | 31.54 | 0.00 | 0.00 | 3.86 |
3385 | 4067 | 3.491208 | CCATTCTGGAGGGAGCTTG | 57.509 | 57.895 | 0.00 | 0.00 | 40.96 | 4.01 |
3386 | 4068 | 0.622665 | CCATTCTGGAGGGAGCTTGT | 59.377 | 55.000 | 0.00 | 0.00 | 40.96 | 3.16 |
3406 | 4088 | 4.619973 | TGTGGAAAATGATGTTCTTGTGC | 58.380 | 39.130 | 0.00 | 0.00 | 0.00 | 4.57 |
3511 | 4193 | 6.042322 | TCCTGTTTCTTTAAGCTGGTACTACA | 59.958 | 38.462 | 0.00 | 0.00 | 36.63 | 2.74 |
3572 | 4254 | 2.245096 | CGCTTTGCAACAAGAGCATAC | 58.755 | 47.619 | 18.29 | 0.00 | 42.33 | 2.39 |
3591 | 4273 | 5.692204 | GCATACGCTACATGATAGTTTCACT | 59.308 | 40.000 | 0.00 | 0.00 | 34.00 | 3.41 |
3622 | 4304 | 6.428385 | AGCAGAAAGTGAATAGTACAATGC | 57.572 | 37.500 | 0.00 | 0.00 | 0.00 | 3.56 |
3640 | 4322 | 0.037882 | GCCCTCAAAGGAAGCAAAGC | 60.038 | 55.000 | 0.00 | 0.00 | 37.67 | 3.51 |
3641 | 4323 | 0.242017 | CCCTCAAAGGAAGCAAAGCG | 59.758 | 55.000 | 0.00 | 0.00 | 37.67 | 4.68 |
3642 | 4324 | 1.238439 | CCTCAAAGGAAGCAAAGCGA | 58.762 | 50.000 | 0.00 | 0.00 | 37.67 | 4.93 |
3643 | 4325 | 1.198637 | CCTCAAAGGAAGCAAAGCGAG | 59.801 | 52.381 | 0.00 | 0.00 | 37.67 | 5.03 |
3655 | 4337 | 7.040686 | AGGAAGCAAAGCGAGAGTAAAATTTTA | 60.041 | 33.333 | 6.54 | 6.54 | 0.00 | 1.52 |
3691 | 4373 | 1.272592 | TGGGGCATGAGAAGCAAATCA | 60.273 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
3693 | 4375 | 2.433239 | GGGGCATGAGAAGCAAATCAAT | 59.567 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
3694 | 4376 | 3.492137 | GGGGCATGAGAAGCAAATCAATC | 60.492 | 47.826 | 0.00 | 0.00 | 0.00 | 2.67 |
3695 | 4377 | 3.492137 | GGGCATGAGAAGCAAATCAATCC | 60.492 | 47.826 | 0.00 | 0.00 | 0.00 | 3.01 |
3697 | 4379 | 4.360563 | GCATGAGAAGCAAATCAATCCAG | 58.639 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
3699 | 4381 | 5.579718 | CATGAGAAGCAAATCAATCCAGAC | 58.420 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
3700 | 4382 | 4.654915 | TGAGAAGCAAATCAATCCAGACA | 58.345 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
3701 | 4383 | 4.698780 | TGAGAAGCAAATCAATCCAGACAG | 59.301 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
3702 | 4384 | 3.442977 | AGAAGCAAATCAATCCAGACAGC | 59.557 | 43.478 | 0.00 | 0.00 | 0.00 | 4.40 |
3703 | 4385 | 2.799017 | AGCAAATCAATCCAGACAGCA | 58.201 | 42.857 | 0.00 | 0.00 | 0.00 | 4.41 |
3704 | 4386 | 3.159472 | AGCAAATCAATCCAGACAGCAA | 58.841 | 40.909 | 0.00 | 0.00 | 0.00 | 3.91 |
3705 | 4387 | 3.575256 | AGCAAATCAATCCAGACAGCAAA | 59.425 | 39.130 | 0.00 | 0.00 | 0.00 | 3.68 |
3706 | 4388 | 3.676646 | GCAAATCAATCCAGACAGCAAAC | 59.323 | 43.478 | 0.00 | 0.00 | 0.00 | 2.93 |
3707 | 4389 | 4.560108 | GCAAATCAATCCAGACAGCAAACT | 60.560 | 41.667 | 0.00 | 0.00 | 0.00 | 2.66 |
3708 | 4390 | 5.535333 | CAAATCAATCCAGACAGCAAACTT | 58.465 | 37.500 | 0.00 | 0.00 | 0.00 | 2.66 |
3709 | 4391 | 5.796424 | AATCAATCCAGACAGCAAACTTT | 57.204 | 34.783 | 0.00 | 0.00 | 0.00 | 2.66 |
3710 | 4392 | 4.572985 | TCAATCCAGACAGCAAACTTTG | 57.427 | 40.909 | 0.00 | 0.00 | 0.00 | 2.77 |
3711 | 4393 | 4.206375 | TCAATCCAGACAGCAAACTTTGA | 58.794 | 39.130 | 5.65 | 0.00 | 0.00 | 2.69 |
3712 | 4394 | 4.036734 | TCAATCCAGACAGCAAACTTTGAC | 59.963 | 41.667 | 5.65 | 0.00 | 0.00 | 3.18 |
3713 | 4395 | 1.939934 | TCCAGACAGCAAACTTTGACG | 59.060 | 47.619 | 5.65 | 0.00 | 0.00 | 4.35 |
3714 | 4396 | 1.002468 | CCAGACAGCAAACTTTGACGG | 60.002 | 52.381 | 5.65 | 1.11 | 0.00 | 4.79 |
3715 | 4397 | 1.939934 | CAGACAGCAAACTTTGACGGA | 59.060 | 47.619 | 5.65 | 0.00 | 0.00 | 4.69 |
3716 | 4398 | 1.940613 | AGACAGCAAACTTTGACGGAC | 59.059 | 47.619 | 5.65 | 0.00 | 0.00 | 4.79 |
3717 | 4399 | 1.940613 | GACAGCAAACTTTGACGGACT | 59.059 | 47.619 | 5.65 | 0.00 | 0.00 | 3.85 |
3721 | 4403 | 3.311322 | CAGCAAACTTTGACGGACTTGTA | 59.689 | 43.478 | 5.65 | 0.00 | 0.00 | 2.41 |
3758 | 4440 | 3.385115 | AGGTTAACCAGCTAGCCTATGT | 58.615 | 45.455 | 26.26 | 0.27 | 38.89 | 2.29 |
3899 | 4581 | 2.905415 | TTGTGCAAGAGGGAATGGAT | 57.095 | 45.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3944 | 4626 | 1.152756 | AGTCCCACAAGCCACAACC | 60.153 | 57.895 | 0.00 | 0.00 | 0.00 | 3.77 |
3970 | 4652 | 9.896645 | CATGCATACCTATCAATTATCTTACCT | 57.103 | 33.333 | 0.00 | 0.00 | 0.00 | 3.08 |
4001 | 4683 | 9.753674 | AATTCAGTCCCTTCAAATTAATACTCA | 57.246 | 29.630 | 0.00 | 0.00 | 0.00 | 3.41 |
4023 | 4705 | 0.391927 | CCGCCCCGAATTACTTGTCA | 60.392 | 55.000 | 0.00 | 0.00 | 0.00 | 3.58 |
4041 | 4723 | 6.596888 | ACTTGTCACAGAAATGGATGTATCTG | 59.403 | 38.462 | 0.00 | 0.00 | 43.79 | 2.90 |
4042 | 4724 | 4.877823 | TGTCACAGAAATGGATGTATCTGC | 59.122 | 41.667 | 1.77 | 0.00 | 42.34 | 4.26 |
4044 | 4726 | 5.530171 | GTCACAGAAATGGATGTATCTGCAT | 59.470 | 40.000 | 1.77 | 0.00 | 42.34 | 3.96 |
4089 | 4771 | 8.246180 | ACATCAATTTCTATCCATTTGTGTGAC | 58.754 | 33.333 | 0.00 | 0.00 | 0.00 | 3.67 |
4091 | 4773 | 8.175925 | TCAATTTCTATCCATTTGTGTGACAA | 57.824 | 30.769 | 0.00 | 0.00 | 36.11 | 3.18 |
4138 | 4821 | 6.095860 | CCAGATAAGAGCAAAACCATGAATCA | 59.904 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
4168 | 4851 | 1.933181 | CACAACGACTGAGCACAAGAA | 59.067 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
4243 | 4926 | 4.698304 | CCGTGTTTACCACAAATACCATCT | 59.302 | 41.667 | 0.00 | 0.00 | 44.78 | 2.90 |
4245 | 4928 | 5.180492 | CGTGTTTACCACAAATACCATCTGT | 59.820 | 40.000 | 0.00 | 0.00 | 44.78 | 3.41 |
4263 | 4946 | 3.802139 | TCTGTTTCTGTGTAAGCAAGTCG | 59.198 | 43.478 | 0.00 | 0.00 | 0.00 | 4.18 |
4264 | 4947 | 2.286833 | TGTTTCTGTGTAAGCAAGTCGC | 59.713 | 45.455 | 0.00 | 0.00 | 42.91 | 5.19 |
4316 | 4999 | 5.348451 | ACAAAATTGACAAGCAACTTCACAC | 59.652 | 36.000 | 0.00 | 0.00 | 39.78 | 3.82 |
4342 | 5025 | 6.889177 | TCAAAGCATTACTTGAATCCCATACA | 59.111 | 34.615 | 0.00 | 0.00 | 39.09 | 2.29 |
4353 | 5036 | 7.399765 | ACTTGAATCCCATACATTGATTTTGGA | 59.600 | 33.333 | 0.00 | 0.00 | 0.00 | 3.53 |
4358 | 5041 | 5.299028 | TCCCATACATTGATTTTGGATGACG | 59.701 | 40.000 | 0.00 | 0.00 | 37.58 | 4.35 |
4372 | 5055 | 2.420022 | GGATGACGGGAACATTCAACAG | 59.580 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
102 | 104 | 1.136336 | GTGTCTTCGGCGTTGTTGATC | 60.136 | 52.381 | 6.85 | 0.00 | 0.00 | 2.92 |
197 | 199 | 4.181578 | CTCTGGGTTTACGGTGTCAATAG | 58.818 | 47.826 | 0.00 | 0.00 | 0.00 | 1.73 |
212 | 214 | 2.590611 | TCCCTTATGTACTCCTCTGGGT | 59.409 | 50.000 | 0.00 | 0.00 | 35.20 | 4.51 |
240 | 242 | 1.951602 | TCGGAGTCTGAAACGTTCTGA | 59.048 | 47.619 | 0.00 | 2.41 | 35.61 | 3.27 |
349 | 353 | 9.819267 | CTTCGGACTACTTCTTATTTTCCTAAT | 57.181 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
350 | 354 | 8.255905 | CCTTCGGACTACTTCTTATTTTCCTAA | 58.744 | 37.037 | 0.00 | 0.00 | 0.00 | 2.69 |
431 | 438 | 2.273449 | GTGTCCATGAGGCAGGGG | 59.727 | 66.667 | 0.00 | 0.00 | 35.84 | 4.79 |
471 | 478 | 5.163913 | CCAGAAGAAGTATCGTGCAAGAAAG | 60.164 | 44.000 | 6.39 | 0.00 | 0.00 | 2.62 |
521 | 528 | 4.628333 | GGTACGATGGTCAAAATCTTCGAA | 59.372 | 41.667 | 0.00 | 0.00 | 35.47 | 3.71 |
528 | 535 | 3.322211 | TCGTGGTACGATGGTCAAAAT | 57.678 | 42.857 | 0.00 | 0.00 | 46.73 | 1.82 |
580 | 587 | 7.307694 | GTCATGATGATCTAGATCTGTCAGAC | 58.692 | 42.308 | 28.70 | 27.65 | 36.96 | 3.51 |
617 | 627 | 3.118186 | TCTCGAAAAACTTGTCCTTGGGA | 60.118 | 43.478 | 0.00 | 0.00 | 0.00 | 4.37 |
741 | 751 | 3.876589 | TTGTCTCCACGCTTCCGGC | 62.877 | 63.158 | 0.00 | 0.00 | 39.22 | 6.13 |
765 | 775 | 7.725251 | TCTAAAACTTGTTGCTCCATTGATTT | 58.275 | 30.769 | 0.00 | 0.00 | 0.00 | 2.17 |
768 | 778 | 6.061441 | TCTCTAAAACTTGTTGCTCCATTGA | 58.939 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
788 | 798 | 2.424812 | GCCAATCTCTCTCTCCCTCTCT | 60.425 | 54.545 | 0.00 | 0.00 | 0.00 | 3.10 |
789 | 799 | 1.963515 | GCCAATCTCTCTCTCCCTCTC | 59.036 | 57.143 | 0.00 | 0.00 | 0.00 | 3.20 |
790 | 800 | 1.412937 | GGCCAATCTCTCTCTCCCTCT | 60.413 | 57.143 | 0.00 | 0.00 | 0.00 | 3.69 |
791 | 801 | 1.047801 | GGCCAATCTCTCTCTCCCTC | 58.952 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
792 | 802 | 0.399806 | GGGCCAATCTCTCTCTCCCT | 60.400 | 60.000 | 4.39 | 0.00 | 0.00 | 4.20 |
793 | 803 | 1.414866 | GGGGCCAATCTCTCTCTCCC | 61.415 | 65.000 | 4.39 | 0.00 | 0.00 | 4.30 |
794 | 804 | 0.692419 | TGGGGCCAATCTCTCTCTCC | 60.692 | 60.000 | 4.39 | 0.00 | 0.00 | 3.71 |
795 | 805 | 1.140652 | CTTGGGGCCAATCTCTCTCTC | 59.859 | 57.143 | 4.39 | 0.00 | 35.20 | 3.20 |
796 | 806 | 1.211456 | CTTGGGGCCAATCTCTCTCT | 58.789 | 55.000 | 4.39 | 0.00 | 35.20 | 3.10 |
797 | 807 | 0.182299 | CCTTGGGGCCAATCTCTCTC | 59.818 | 60.000 | 4.39 | 0.00 | 35.20 | 3.20 |
798 | 808 | 0.551131 | ACCTTGGGGCCAATCTCTCT | 60.551 | 55.000 | 4.39 | 0.00 | 35.20 | 3.10 |
799 | 809 | 0.394899 | CACCTTGGGGCCAATCTCTC | 60.395 | 60.000 | 4.39 | 0.00 | 35.20 | 3.20 |
800 | 810 | 1.142688 | ACACCTTGGGGCCAATCTCT | 61.143 | 55.000 | 4.39 | 0.00 | 35.20 | 3.10 |
801 | 811 | 0.681243 | GACACCTTGGGGCCAATCTC | 60.681 | 60.000 | 4.39 | 0.00 | 35.20 | 2.75 |
802 | 812 | 1.384191 | GACACCTTGGGGCCAATCT | 59.616 | 57.895 | 4.39 | 0.00 | 35.20 | 2.40 |
803 | 813 | 0.967380 | CTGACACCTTGGGGCCAATC | 60.967 | 60.000 | 4.39 | 0.00 | 35.20 | 2.67 |
804 | 814 | 1.077265 | CTGACACCTTGGGGCCAAT | 59.923 | 57.895 | 4.39 | 0.00 | 35.20 | 3.16 |
805 | 815 | 2.520458 | CTGACACCTTGGGGCCAA | 59.480 | 61.111 | 4.39 | 0.00 | 35.63 | 4.52 |
806 | 816 | 3.579302 | CCTGACACCTTGGGGCCA | 61.579 | 66.667 | 4.39 | 0.00 | 35.63 | 5.36 |
807 | 817 | 2.771328 | CTTCCTGACACCTTGGGGCC | 62.771 | 65.000 | 0.00 | 0.00 | 35.63 | 5.80 |
808 | 818 | 1.303643 | CTTCCTGACACCTTGGGGC | 60.304 | 63.158 | 0.00 | 0.00 | 35.63 | 5.80 |
809 | 819 | 1.303643 | GCTTCCTGACACCTTGGGG | 60.304 | 63.158 | 0.00 | 0.00 | 38.88 | 4.96 |
810 | 820 | 1.303643 | GGCTTCCTGACACCTTGGG | 60.304 | 63.158 | 0.00 | 0.00 | 0.00 | 4.12 |
811 | 821 | 0.984230 | TAGGCTTCCTGACACCTTGG | 59.016 | 55.000 | 0.00 | 0.00 | 34.61 | 3.61 |
812 | 822 | 3.356529 | AATAGGCTTCCTGACACCTTG | 57.643 | 47.619 | 0.00 | 0.00 | 34.61 | 3.61 |
813 | 823 | 4.388577 | AAAATAGGCTTCCTGACACCTT | 57.611 | 40.909 | 0.00 | 0.00 | 34.61 | 3.50 |
814 | 824 | 4.324331 | GGTAAAATAGGCTTCCTGACACCT | 60.324 | 45.833 | 0.00 | 0.00 | 34.61 | 4.00 |
815 | 825 | 3.945921 | GGTAAAATAGGCTTCCTGACACC | 59.054 | 47.826 | 0.00 | 0.00 | 34.61 | 4.16 |
816 | 826 | 4.844884 | AGGTAAAATAGGCTTCCTGACAC | 58.155 | 43.478 | 0.00 | 0.00 | 34.61 | 3.67 |
817 | 827 | 6.824958 | ATAGGTAAAATAGGCTTCCTGACA | 57.175 | 37.500 | 0.00 | 0.00 | 34.61 | 3.58 |
934 | 944 | 9.941664 | CGTAGGATAAACGATAAAGTAGAGAAA | 57.058 | 33.333 | 0.00 | 0.00 | 42.90 | 2.52 |
935 | 945 | 9.113838 | ACGTAGGATAAACGATAAAGTAGAGAA | 57.886 | 33.333 | 2.27 | 0.00 | 42.90 | 2.87 |
936 | 946 | 8.554528 | CACGTAGGATAAACGATAAAGTAGAGA | 58.445 | 37.037 | 2.27 | 0.00 | 42.90 | 3.10 |
937 | 947 | 7.802251 | CCACGTAGGATAAACGATAAAGTAGAG | 59.198 | 40.741 | 2.27 | 0.00 | 42.90 | 2.43 |
938 | 948 | 7.642669 | CCACGTAGGATAAACGATAAAGTAGA | 58.357 | 38.462 | 2.27 | 0.00 | 42.90 | 2.59 |
939 | 949 | 6.361748 | GCCACGTAGGATAAACGATAAAGTAG | 59.638 | 42.308 | 8.04 | 0.00 | 42.90 | 2.57 |
940 | 950 | 6.183360 | TGCCACGTAGGATAAACGATAAAGTA | 60.183 | 38.462 | 8.04 | 0.00 | 42.90 | 2.24 |
941 | 951 | 5.045872 | GCCACGTAGGATAAACGATAAAGT | 58.954 | 41.667 | 8.04 | 0.00 | 42.90 | 2.66 |
942 | 952 | 5.045215 | TGCCACGTAGGATAAACGATAAAG | 58.955 | 41.667 | 8.04 | 0.00 | 42.90 | 1.85 |
943 | 953 | 4.805192 | GTGCCACGTAGGATAAACGATAAA | 59.195 | 41.667 | 8.04 | 0.00 | 42.90 | 1.40 |
944 | 954 | 4.098349 | AGTGCCACGTAGGATAAACGATAA | 59.902 | 41.667 | 8.04 | 0.00 | 42.90 | 1.75 |
945 | 955 | 3.633525 | AGTGCCACGTAGGATAAACGATA | 59.366 | 43.478 | 8.04 | 0.00 | 42.90 | 2.92 |
946 | 956 | 2.429610 | AGTGCCACGTAGGATAAACGAT | 59.570 | 45.455 | 8.04 | 0.00 | 42.90 | 3.73 |
947 | 957 | 1.820519 | AGTGCCACGTAGGATAAACGA | 59.179 | 47.619 | 8.04 | 0.00 | 42.90 | 3.85 |
948 | 958 | 2.190981 | GAGTGCCACGTAGGATAAACG | 58.809 | 52.381 | 8.04 | 0.00 | 45.64 | 3.60 |
949 | 959 | 3.241067 | TGAGTGCCACGTAGGATAAAC | 57.759 | 47.619 | 8.04 | 1.53 | 41.22 | 2.01 |
950 | 960 | 4.038763 | CCTATGAGTGCCACGTAGGATAAA | 59.961 | 45.833 | 14.81 | 0.00 | 44.95 | 1.40 |
951 | 961 | 3.572682 | CCTATGAGTGCCACGTAGGATAA | 59.427 | 47.826 | 14.81 | 0.00 | 44.95 | 1.75 |
952 | 962 | 3.154710 | CCTATGAGTGCCACGTAGGATA | 58.845 | 50.000 | 14.81 | 0.00 | 44.95 | 2.59 |
953 | 963 | 1.964223 | CCTATGAGTGCCACGTAGGAT | 59.036 | 52.381 | 14.81 | 0.00 | 44.95 | 3.24 |
954 | 964 | 1.064240 | TCCTATGAGTGCCACGTAGGA | 60.064 | 52.381 | 17.20 | 17.20 | 46.96 | 2.94 |
955 | 965 | 1.399714 | TCCTATGAGTGCCACGTAGG | 58.600 | 55.000 | 14.15 | 14.15 | 44.08 | 3.18 |
956 | 966 | 3.366476 | GCTATCCTATGAGTGCCACGTAG | 60.366 | 52.174 | 0.00 | 0.00 | 0.00 | 3.51 |
957 | 967 | 2.557056 | GCTATCCTATGAGTGCCACGTA | 59.443 | 50.000 | 0.00 | 0.00 | 0.00 | 3.57 |
958 | 968 | 1.341531 | GCTATCCTATGAGTGCCACGT | 59.658 | 52.381 | 0.00 | 0.00 | 0.00 | 4.49 |
959 | 969 | 1.341209 | TGCTATCCTATGAGTGCCACG | 59.659 | 52.381 | 0.00 | 0.00 | 0.00 | 4.94 |
960 | 970 | 3.007290 | TGATGCTATCCTATGAGTGCCAC | 59.993 | 47.826 | 0.00 | 0.00 | 0.00 | 5.01 |
961 | 971 | 3.007290 | GTGATGCTATCCTATGAGTGCCA | 59.993 | 47.826 | 0.00 | 0.00 | 0.00 | 4.92 |
962 | 972 | 3.260380 | AGTGATGCTATCCTATGAGTGCC | 59.740 | 47.826 | 0.00 | 0.00 | 0.00 | 5.01 |
963 | 973 | 4.533919 | AGTGATGCTATCCTATGAGTGC | 57.466 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
964 | 974 | 8.286191 | TGTATAGTGATGCTATCCTATGAGTG | 57.714 | 38.462 | 0.00 | 0.00 | 40.61 | 3.51 |
965 | 975 | 8.911965 | CATGTATAGTGATGCTATCCTATGAGT | 58.088 | 37.037 | 0.00 | 0.00 | 40.61 | 3.41 |
966 | 976 | 8.358895 | CCATGTATAGTGATGCTATCCTATGAG | 58.641 | 40.741 | 0.00 | 0.00 | 40.61 | 2.90 |
967 | 977 | 7.201947 | GCCATGTATAGTGATGCTATCCTATGA | 60.202 | 40.741 | 0.00 | 0.00 | 40.61 | 2.15 |
968 | 978 | 6.927936 | GCCATGTATAGTGATGCTATCCTATG | 59.072 | 42.308 | 0.00 | 0.00 | 40.61 | 2.23 |
969 | 979 | 6.042552 | GGCCATGTATAGTGATGCTATCCTAT | 59.957 | 42.308 | 0.00 | 0.00 | 40.61 | 2.57 |
970 | 980 | 5.363868 | GGCCATGTATAGTGATGCTATCCTA | 59.636 | 44.000 | 0.00 | 0.00 | 40.61 | 2.94 |
971 | 981 | 4.163078 | GGCCATGTATAGTGATGCTATCCT | 59.837 | 45.833 | 0.00 | 0.00 | 40.61 | 3.24 |
972 | 982 | 4.163078 | AGGCCATGTATAGTGATGCTATCC | 59.837 | 45.833 | 5.01 | 0.00 | 40.61 | 2.59 |
973 | 983 | 5.105187 | TGAGGCCATGTATAGTGATGCTATC | 60.105 | 44.000 | 5.01 | 0.00 | 40.61 | 2.08 |
974 | 984 | 4.779489 | TGAGGCCATGTATAGTGATGCTAT | 59.221 | 41.667 | 5.01 | 0.00 | 42.63 | 2.97 |
975 | 985 | 4.159557 | TGAGGCCATGTATAGTGATGCTA | 58.840 | 43.478 | 5.01 | 0.00 | 0.00 | 3.49 |
976 | 986 | 2.974794 | TGAGGCCATGTATAGTGATGCT | 59.025 | 45.455 | 5.01 | 0.00 | 0.00 | 3.79 |
977 | 987 | 3.407424 | TGAGGCCATGTATAGTGATGC | 57.593 | 47.619 | 5.01 | 0.00 | 0.00 | 3.91 |
978 | 988 | 3.750130 | GCTTGAGGCCATGTATAGTGATG | 59.250 | 47.826 | 5.01 | 0.00 | 34.27 | 3.07 |
979 | 989 | 3.392285 | TGCTTGAGGCCATGTATAGTGAT | 59.608 | 43.478 | 5.01 | 0.00 | 40.92 | 3.06 |
980 | 990 | 2.771372 | TGCTTGAGGCCATGTATAGTGA | 59.229 | 45.455 | 5.01 | 0.00 | 40.92 | 3.41 |
981 | 991 | 2.874701 | GTGCTTGAGGCCATGTATAGTG | 59.125 | 50.000 | 5.01 | 0.00 | 40.92 | 2.74 |
982 | 992 | 2.774234 | AGTGCTTGAGGCCATGTATAGT | 59.226 | 45.455 | 5.01 | 0.00 | 40.92 | 2.12 |
983 | 993 | 3.482156 | AGTGCTTGAGGCCATGTATAG | 57.518 | 47.619 | 5.01 | 0.00 | 40.92 | 1.31 |
984 | 994 | 3.931907 | AAGTGCTTGAGGCCATGTATA | 57.068 | 42.857 | 5.01 | 0.00 | 40.92 | 1.47 |
985 | 995 | 2.814805 | AAGTGCTTGAGGCCATGTAT | 57.185 | 45.000 | 5.01 | 0.00 | 40.92 | 2.29 |
986 | 996 | 2.224744 | TGAAAGTGCTTGAGGCCATGTA | 60.225 | 45.455 | 5.01 | 0.00 | 40.92 | 2.29 |
987 | 997 | 1.251251 | GAAAGTGCTTGAGGCCATGT | 58.749 | 50.000 | 5.01 | 0.00 | 40.92 | 3.21 |
988 | 998 | 1.201647 | CTGAAAGTGCTTGAGGCCATG | 59.798 | 52.381 | 5.01 | 0.00 | 40.92 | 3.66 |
989 | 999 | 1.542492 | CTGAAAGTGCTTGAGGCCAT | 58.458 | 50.000 | 5.01 | 0.00 | 40.92 | 4.40 |
990 | 1000 | 1.174712 | GCTGAAAGTGCTTGAGGCCA | 61.175 | 55.000 | 5.01 | 0.00 | 40.92 | 5.36 |
991 | 1001 | 1.583477 | GCTGAAAGTGCTTGAGGCC | 59.417 | 57.895 | 0.00 | 0.00 | 40.92 | 5.19 |
992 | 1002 | 1.583477 | GGCTGAAAGTGCTTGAGGC | 59.417 | 57.895 | 0.00 | 3.27 | 42.22 | 4.70 |
993 | 1003 | 0.538057 | TGGGCTGAAAGTGCTTGAGG | 60.538 | 55.000 | 0.00 | 0.00 | 35.30 | 3.86 |
994 | 1004 | 0.879765 | CTGGGCTGAAAGTGCTTGAG | 59.120 | 55.000 | 0.00 | 0.00 | 35.30 | 3.02 |
995 | 1005 | 0.473755 | TCTGGGCTGAAAGTGCTTGA | 59.526 | 50.000 | 0.00 | 0.00 | 35.30 | 3.02 |
996 | 1006 | 0.595095 | GTCTGGGCTGAAAGTGCTTG | 59.405 | 55.000 | 0.00 | 0.00 | 35.30 | 4.01 |
997 | 1007 | 0.475906 | AGTCTGGGCTGAAAGTGCTT | 59.524 | 50.000 | 0.00 | 0.00 | 35.30 | 3.91 |
998 | 1008 | 0.036022 | GAGTCTGGGCTGAAAGTGCT | 59.964 | 55.000 | 0.00 | 0.00 | 35.30 | 4.40 |
1042 | 1052 | 4.756458 | GCGCCTGTCTGCTCTGCT | 62.756 | 66.667 | 0.00 | 0.00 | 0.00 | 4.24 |
1183 | 1323 | 1.099879 | ATGGCAAGCTCGCAGAATCC | 61.100 | 55.000 | 0.00 | 0.00 | 34.09 | 3.01 |
1592 | 1751 | 6.955364 | AGAACTATCCTAAAAAGTACCCCAC | 58.045 | 40.000 | 0.00 | 0.00 | 0.00 | 4.61 |
1606 | 1765 | 6.133356 | AGCAGCTAGAAGTTAGAACTATCCT | 58.867 | 40.000 | 0.00 | 0.00 | 38.57 | 3.24 |
1634 | 1793 | 2.316108 | GAGAAAGTCCCAGGCCAAAAA | 58.684 | 47.619 | 5.01 | 0.00 | 0.00 | 1.94 |
1676 | 1835 | 6.074249 | GGAAACTCGACATAACAATAGCTAGC | 60.074 | 42.308 | 6.62 | 6.62 | 0.00 | 3.42 |
1677 | 1836 | 6.978659 | TGGAAACTCGACATAACAATAGCTAG | 59.021 | 38.462 | 0.00 | 0.00 | 0.00 | 3.42 |
1678 | 1837 | 6.755141 | GTGGAAACTCGACATAACAATAGCTA | 59.245 | 38.462 | 0.00 | 0.00 | 0.00 | 3.32 |
1679 | 1838 | 5.581085 | GTGGAAACTCGACATAACAATAGCT | 59.419 | 40.000 | 0.00 | 0.00 | 0.00 | 3.32 |
1684 | 1843 | 3.061322 | CGGTGGAAACTCGACATAACAA | 58.939 | 45.455 | 0.00 | 0.00 | 0.00 | 2.83 |
1847 | 2010 | 4.523943 | ACAAATGCAGTCAAGGCTAATGAA | 59.476 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
1893 | 2058 | 5.050227 | CCACGATTTCATGTGTGCAATTTTT | 60.050 | 36.000 | 0.00 | 0.00 | 34.28 | 1.94 |
1894 | 2059 | 4.448395 | CCACGATTTCATGTGTGCAATTTT | 59.552 | 37.500 | 0.00 | 0.00 | 34.28 | 1.82 |
1895 | 2060 | 3.989167 | CCACGATTTCATGTGTGCAATTT | 59.011 | 39.130 | 0.00 | 0.00 | 34.28 | 1.82 |
1896 | 2061 | 3.577667 | CCACGATTTCATGTGTGCAATT | 58.422 | 40.909 | 0.00 | 0.00 | 34.28 | 2.32 |
1897 | 2062 | 2.094597 | CCCACGATTTCATGTGTGCAAT | 60.095 | 45.455 | 0.00 | 0.00 | 34.28 | 3.56 |
1901 | 2067 | 1.199789 | CCACCCACGATTTCATGTGTG | 59.800 | 52.381 | 0.00 | 0.00 | 34.28 | 3.82 |
1961 | 2129 | 3.699038 | CCACCCTTGTTCTTCTGTTTTGA | 59.301 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
2035 | 2203 | 6.245724 | GTCAAAAGTACACACAAGTACACAC | 58.754 | 40.000 | 6.97 | 0.00 | 45.25 | 3.82 |
2036 | 2204 | 5.062433 | CGTCAAAAGTACACACAAGTACACA | 59.938 | 40.000 | 6.97 | 0.00 | 45.25 | 3.72 |
2037 | 2205 | 5.486706 | CGTCAAAAGTACACACAAGTACAC | 58.513 | 41.667 | 6.97 | 0.00 | 45.25 | 2.90 |
2038 | 2206 | 4.567558 | CCGTCAAAAGTACACACAAGTACA | 59.432 | 41.667 | 6.97 | 0.00 | 45.25 | 2.90 |
2039 | 2207 | 4.567959 | ACCGTCAAAAGTACACACAAGTAC | 59.432 | 41.667 | 0.00 | 0.00 | 43.61 | 2.73 |
2040 | 2208 | 4.757594 | ACCGTCAAAAGTACACACAAGTA | 58.242 | 39.130 | 0.00 | 0.00 | 0.00 | 2.24 |
2041 | 2209 | 3.602483 | ACCGTCAAAAGTACACACAAGT | 58.398 | 40.909 | 0.00 | 0.00 | 0.00 | 3.16 |
2042 | 2210 | 5.917541 | ATACCGTCAAAAGTACACACAAG | 57.082 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
2043 | 2211 | 6.421501 | CACTATACCGTCAAAAGTACACACAA | 59.578 | 38.462 | 0.00 | 0.00 | 0.00 | 3.33 |
2044 | 2212 | 5.921976 | CACTATACCGTCAAAAGTACACACA | 59.078 | 40.000 | 0.00 | 0.00 | 0.00 | 3.72 |
2059 | 2227 | 6.621316 | AGATATATCTTCGCCACTATACCG | 57.379 | 41.667 | 9.57 | 0.00 | 31.97 | 4.02 |
2087 | 2255 | 0.255890 | GCAGTAAGGATCCAGGCCAA | 59.744 | 55.000 | 15.82 | 0.00 | 0.00 | 4.52 |
2111 | 2284 | 3.320673 | ACGGCACCTCTTTAAGAGAAG | 57.679 | 47.619 | 22.19 | 14.56 | 45.07 | 2.85 |
2165 | 2339 | 2.868583 | CTGCTTATCGTGACCTGGATTG | 59.131 | 50.000 | 0.00 | 0.00 | 0.00 | 2.67 |
2191 | 2365 | 4.584327 | ACCATTGAGTAAAACCACTTGC | 57.416 | 40.909 | 0.00 | 0.00 | 0.00 | 4.01 |
2205 | 2379 | 5.598005 | ACCTGTTCTTGAAATGAACCATTGA | 59.402 | 36.000 | 0.00 | 0.00 | 46.83 | 2.57 |
2249 | 2423 | 1.070289 | TCTCCTCTGCTAGCGTCGATA | 59.930 | 52.381 | 10.77 | 0.00 | 0.00 | 2.92 |
2449 | 2623 | 8.358895 | AGTACTTCTACAAGTCTAAACAGAACC | 58.641 | 37.037 | 0.00 | 0.00 | 42.27 | 3.62 |
2481 | 2658 | 2.233186 | CACTGCAGAAGATGACCAGAGA | 59.767 | 50.000 | 23.35 | 0.00 | 0.00 | 3.10 |
2778 | 3435 | 3.948196 | AACACATGCATGCACAAAAAC | 57.052 | 38.095 | 25.37 | 0.00 | 0.00 | 2.43 |
3007 | 3679 | 4.580580 | AGGCATGGCAGTAAAATAACTAGC | 59.419 | 41.667 | 22.64 | 0.00 | 0.00 | 3.42 |
3019 | 3691 | 2.040278 | TCTTTCTGTTAGGCATGGCAGT | 59.960 | 45.455 | 22.64 | 3.93 | 0.00 | 4.40 |
3024 | 3696 | 6.128742 | GCAAAACATTCTTTCTGTTAGGCATG | 60.129 | 38.462 | 0.00 | 0.00 | 35.84 | 4.06 |
3056 | 3729 | 1.467734 | CAGCTCTGAACTGCCACAATC | 59.532 | 52.381 | 0.00 | 0.00 | 0.00 | 2.67 |
3322 | 4003 | 3.365265 | CTTGTGGCGCCTTGGACC | 61.365 | 66.667 | 29.70 | 8.80 | 0.00 | 4.46 |
3343 | 4025 | 0.686224 | TTTTTGGGCATGGAAGCTGG | 59.314 | 50.000 | 0.00 | 0.00 | 34.17 | 4.85 |
3385 | 4067 | 4.619973 | TGCACAAGAACATCATTTTCCAC | 58.380 | 39.130 | 0.00 | 0.00 | 0.00 | 4.02 |
3386 | 4068 | 4.933505 | TGCACAAGAACATCATTTTCCA | 57.066 | 36.364 | 0.00 | 0.00 | 0.00 | 3.53 |
3453 | 4135 | 6.151691 | GCTAAACTGCATCATTCTTTTGTGA | 58.848 | 36.000 | 0.00 | 0.00 | 0.00 | 3.58 |
3511 | 4193 | 7.425606 | AGAAACATGAAAACGCTTGATAAAGT | 58.574 | 30.769 | 0.00 | 0.00 | 0.00 | 2.66 |
3591 | 4273 | 7.750229 | ACTATTCACTTTCTGCTTTTCATCA | 57.250 | 32.000 | 0.00 | 0.00 | 0.00 | 3.07 |
3600 | 4282 | 5.449177 | GGGCATTGTACTATTCACTTTCTGC | 60.449 | 44.000 | 0.00 | 0.00 | 0.00 | 4.26 |
3622 | 4304 | 0.242017 | CGCTTTGCTTCCTTTGAGGG | 59.758 | 55.000 | 0.00 | 0.00 | 35.59 | 4.30 |
3655 | 4337 | 5.922960 | TGCCCCATATTTATTGACCTAGT | 57.077 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
3657 | 4339 | 6.274436 | TCTCATGCCCCATATTTATTGACCTA | 59.726 | 38.462 | 0.00 | 0.00 | 0.00 | 3.08 |
3675 | 4357 | 4.097437 | TCTGGATTGATTTGCTTCTCATGC | 59.903 | 41.667 | 0.00 | 0.00 | 0.00 | 4.06 |
3691 | 4373 | 3.003689 | CGTCAAAGTTTGCTGTCTGGATT | 59.996 | 43.478 | 10.90 | 0.00 | 0.00 | 3.01 |
3693 | 4375 | 1.939934 | CGTCAAAGTTTGCTGTCTGGA | 59.060 | 47.619 | 10.90 | 0.00 | 0.00 | 3.86 |
3694 | 4376 | 1.002468 | CCGTCAAAGTTTGCTGTCTGG | 60.002 | 52.381 | 10.90 | 2.65 | 0.00 | 3.86 |
3695 | 4377 | 1.939934 | TCCGTCAAAGTTTGCTGTCTG | 59.060 | 47.619 | 10.90 | 0.00 | 0.00 | 3.51 |
3697 | 4379 | 1.940613 | AGTCCGTCAAAGTTTGCTGTC | 59.059 | 47.619 | 10.90 | 1.76 | 0.00 | 3.51 |
3699 | 4381 | 2.097466 | ACAAGTCCGTCAAAGTTTGCTG | 59.903 | 45.455 | 10.90 | 5.45 | 0.00 | 4.41 |
3700 | 4382 | 2.365582 | ACAAGTCCGTCAAAGTTTGCT | 58.634 | 42.857 | 10.90 | 0.00 | 0.00 | 3.91 |
3701 | 4383 | 2.844122 | ACAAGTCCGTCAAAGTTTGC | 57.156 | 45.000 | 10.90 | 5.48 | 0.00 | 3.68 |
3702 | 4384 | 3.311322 | TGCTACAAGTCCGTCAAAGTTTG | 59.689 | 43.478 | 9.44 | 9.44 | 0.00 | 2.93 |
3703 | 4385 | 3.537580 | TGCTACAAGTCCGTCAAAGTTT | 58.462 | 40.909 | 0.00 | 0.00 | 0.00 | 2.66 |
3704 | 4386 | 3.188159 | TGCTACAAGTCCGTCAAAGTT | 57.812 | 42.857 | 0.00 | 0.00 | 0.00 | 2.66 |
3705 | 4387 | 2.902705 | TGCTACAAGTCCGTCAAAGT | 57.097 | 45.000 | 0.00 | 0.00 | 0.00 | 2.66 |
3706 | 4388 | 4.527564 | CTTTTGCTACAAGTCCGTCAAAG | 58.472 | 43.478 | 0.00 | 0.00 | 0.00 | 2.77 |
3707 | 4389 | 3.242936 | GCTTTTGCTACAAGTCCGTCAAA | 60.243 | 43.478 | 0.00 | 0.00 | 43.35 | 2.69 |
3708 | 4390 | 2.289547 | GCTTTTGCTACAAGTCCGTCAA | 59.710 | 45.455 | 0.00 | 0.00 | 43.35 | 3.18 |
3709 | 4391 | 1.871039 | GCTTTTGCTACAAGTCCGTCA | 59.129 | 47.619 | 0.00 | 0.00 | 43.35 | 4.35 |
3710 | 4392 | 1.136336 | CGCTTTTGCTACAAGTCCGTC | 60.136 | 52.381 | 0.00 | 0.00 | 44.80 | 4.79 |
3711 | 4393 | 0.865769 | CGCTTTTGCTACAAGTCCGT | 59.134 | 50.000 | 0.00 | 0.00 | 44.80 | 4.69 |
3712 | 4394 | 0.165944 | CCGCTTTTGCTACAAGTCCG | 59.834 | 55.000 | 0.00 | 0.00 | 44.80 | 4.79 |
3713 | 4395 | 1.519408 | TCCGCTTTTGCTACAAGTCC | 58.481 | 50.000 | 0.00 | 0.00 | 44.80 | 3.85 |
3714 | 4396 | 2.289547 | TGTTCCGCTTTTGCTACAAGTC | 59.710 | 45.455 | 0.00 | 0.00 | 44.80 | 3.01 |
3715 | 4397 | 2.290641 | CTGTTCCGCTTTTGCTACAAGT | 59.709 | 45.455 | 0.00 | 0.00 | 44.80 | 3.16 |
3716 | 4398 | 2.548057 | TCTGTTCCGCTTTTGCTACAAG | 59.452 | 45.455 | 0.00 | 0.00 | 44.80 | 3.16 |
3717 | 4399 | 2.548057 | CTCTGTTCCGCTTTTGCTACAA | 59.452 | 45.455 | 0.00 | 0.00 | 44.80 | 2.41 |
3721 | 4403 | 0.179018 | ACCTCTGTTCCGCTTTTGCT | 60.179 | 50.000 | 0.00 | 0.00 | 44.80 | 3.91 |
3758 | 4440 | 2.035704 | GCAAATGATGTGGGTTGTGTCA | 59.964 | 45.455 | 0.00 | 0.00 | 0.00 | 3.58 |
3899 | 4581 | 2.939103 | CGCCAACCAAATTTTGTTTCCA | 59.061 | 40.909 | 4.96 | 0.00 | 0.00 | 3.53 |
3944 | 4626 | 9.896645 | AGGTAAGATAATTGATAGGTATGCATG | 57.103 | 33.333 | 10.16 | 0.00 | 0.00 | 4.06 |
3970 | 4652 | 8.648698 | TTAATTTGAAGGGACTGAATTGATCA | 57.351 | 30.769 | 0.00 | 0.00 | 40.86 | 2.92 |
4001 | 4683 | 0.107848 | CAAGTAATTCGGGGCGGAGT | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
4023 | 4705 | 5.443283 | ACATGCAGATACATCCATTTCTGT | 58.557 | 37.500 | 0.00 | 0.00 | 38.26 | 3.41 |
4089 | 4771 | 1.004979 | TCCCCCGTCCCAAATTACTTG | 59.995 | 52.381 | 0.00 | 0.00 | 34.52 | 3.16 |
4091 | 4773 | 0.916809 | CTCCCCCGTCCCAAATTACT | 59.083 | 55.000 | 0.00 | 0.00 | 0.00 | 2.24 |
4138 | 4821 | 0.753262 | AGTCGTTGTGGAACTGCTCT | 59.247 | 50.000 | 0.00 | 0.00 | 38.04 | 4.09 |
4168 | 4851 | 1.808945 | CCAGATTGTCGCTTGAGCTTT | 59.191 | 47.619 | 1.07 | 0.00 | 39.32 | 3.51 |
4179 | 4862 | 5.402398 | GTTAAAAGGATGTGCCAGATTGTC | 58.598 | 41.667 | 0.00 | 0.00 | 40.02 | 3.18 |
4243 | 4926 | 2.286833 | GCGACTTGCTTACACAGAAACA | 59.713 | 45.455 | 0.00 | 0.00 | 41.73 | 2.83 |
4316 | 4999 | 5.902613 | TGGGATTCAAGTAATGCTTTGAG | 57.097 | 39.130 | 0.00 | 0.00 | 36.25 | 3.02 |
4342 | 5025 | 4.085733 | TGTTCCCGTCATCCAAAATCAAT | 58.914 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
4353 | 5036 | 3.417069 | TCTGTTGAATGTTCCCGTCAT | 57.583 | 42.857 | 0.00 | 0.00 | 0.00 | 3.06 |
4358 | 5041 | 3.888930 | TGACCTTTCTGTTGAATGTTCCC | 59.111 | 43.478 | 0.00 | 0.00 | 31.56 | 3.97 |
4372 | 5055 | 5.607119 | ACATGTAACATTCGTGACCTTTC | 57.393 | 39.130 | 0.00 | 0.00 | 0.00 | 2.62 |
4414 | 5097 | 6.554334 | TTATTTGCCTGTCTCAGTTGTAAC | 57.446 | 37.500 | 0.00 | 0.00 | 0.00 | 2.50 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.