Multiple sequence alignment - TraesCS2B01G288600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G288600 chr2B 100.000 3422 0 0 1 3422 398708036 398704615 0.000000e+00 6320.0
1 TraesCS2B01G288600 chr2B 84.348 115 13 4 659 769 400622370 400622257 1.300000e-19 108.0
2 TraesCS2B01G288600 chr2B 85.714 98 13 1 658 754 790214103 790214006 6.040000e-18 102.0
3 TraesCS2B01G288600 chr2A 95.766 2669 79 14 769 3422 437512913 437510264 0.000000e+00 4272.0
4 TraesCS2B01G288600 chr2A 85.233 386 40 8 5 389 437513266 437512897 6.930000e-102 381.0
5 TraesCS2B01G288600 chr2A 85.149 101 13 2 659 758 749446287 749446188 6.040000e-18 102.0
6 TraesCS2B01G288600 chr2D 97.126 2366 55 9 792 3151 330495116 330492758 0.000000e+00 3980.0
7 TraesCS2B01G288600 chr2D 96.751 277 9 0 3146 3422 330487562 330487286 2.410000e-126 462.0
8 TraesCS2B01G288600 chr2D 88.256 281 33 0 5 285 330495627 330495347 1.520000e-88 337.0
9 TraesCS2B01G288600 chr2D 93.636 110 6 1 385 493 618294777 618294668 2.730000e-36 163.0
10 TraesCS2B01G288600 chr7D 92.241 116 9 0 382 497 34923509 34923394 7.600000e-37 165.0
11 TraesCS2B01G288600 chr7A 93.578 109 7 0 385 493 443969581 443969473 2.730000e-36 163.0
12 TraesCS2B01G288600 chr6A 93.636 110 6 1 385 493 55882009 55882118 2.730000e-36 163.0
13 TraesCS2B01G288600 chr5D 93.578 109 7 0 385 493 543744723 543744615 2.730000e-36 163.0
14 TraesCS2B01G288600 chr3B 92.920 113 7 1 382 493 603869516 603869404 2.730000e-36 163.0
15 TraesCS2B01G288600 chr3B 89.147 129 12 2 367 493 764100943 764100815 3.530000e-35 159.0
16 TraesCS2B01G288600 chr3B 85.567 97 11 2 676 769 772576977 772576881 7.820000e-17 99.0
17 TraesCS2B01G288600 chr3B 86.747 83 8 3 659 740 749556383 749556303 4.700000e-14 89.8
18 TraesCS2B01G288600 chr1D 92.857 112 8 0 382 493 286303813 286303924 2.730000e-36 163.0
19 TraesCS2B01G288600 chr1B 92.857 112 8 0 382 493 220332877 220332988 2.730000e-36 163.0
20 TraesCS2B01G288600 chr4A 86.275 102 13 1 658 758 629655358 629655459 3.610000e-20 110.0
21 TraesCS2B01G288600 chr7B 83.929 112 14 3 658 765 43689278 43689389 1.680000e-18 104.0
22 TraesCS2B01G288600 chr4D 90.000 50 5 0 3360 3409 456051712 456051761 7.930000e-07 65.8
23 TraesCS2B01G288600 chr4B 90.000 50 5 0 3360 3409 570143420 570143469 7.930000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G288600 chr2B 398704615 398708036 3421 True 6320.0 6320 100.0000 1 3422 1 chr2B.!!$R1 3421
1 TraesCS2B01G288600 chr2A 437510264 437513266 3002 True 2326.5 4272 90.4995 5 3422 2 chr2A.!!$R2 3417
2 TraesCS2B01G288600 chr2D 330492758 330495627 2869 True 2158.5 3980 92.6910 5 3151 2 chr2D.!!$R3 3146

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
512 600 0.032540 GGGGTGTTTGCTTGCAAGAG 59.967 55.0 30.39 5.73 0.0 2.85 F
653 741 0.111639 TAACCAAACACCCCCTGAGC 59.888 55.0 0.00 0.00 0.0 4.26 F
753 841 0.113776 ACAGTCCCTCTAACCGTCCA 59.886 55.0 0.00 0.00 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1353 1441 0.602905 AAACCGCGTCCCAGAAGAAG 60.603 55.000 4.92 0.0 0.00 2.85 R
2397 2494 1.133637 TCGGCAGCTTCTCTAGGAGAT 60.134 52.381 0.00 0.0 38.56 2.75 R
2476 2573 1.978455 AAGTGTGGAGTGCGGGTGAA 61.978 55.000 0.00 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.358247 GAAAAGTGGCGGCTCCGA 60.358 61.111 13.11 0.00 42.83 4.55
21 22 1.745489 GAAAAGTGGCGGCTCCGAT 60.745 57.895 13.11 0.00 42.83 4.18
87 88 2.435938 GCTTGAATCCCGTGGCGA 60.436 61.111 0.00 0.00 0.00 5.54
202 204 3.443045 GCATGGTGCAACGGGAGG 61.443 66.667 0.00 0.00 44.26 4.30
216 218 4.400961 GAGGCAAGGCAGCGACCT 62.401 66.667 0.00 0.00 43.91 3.85
218 220 4.704833 GGCAAGGCAGCGACCTCA 62.705 66.667 0.66 0.00 39.93 3.86
253 255 1.486310 AGTGAGGCACTGTCAGTTTGA 59.514 47.619 1.67 0.00 43.63 2.69
259 261 2.030805 GGCACTGTCAGTTTGATGTTCC 60.031 50.000 1.67 0.00 0.00 3.62
406 494 3.857923 TTTTTAACACGGTACAGACGC 57.142 42.857 0.00 0.00 34.00 5.19
407 495 2.505628 TTTAACACGGTACAGACGCA 57.494 45.000 0.00 0.00 34.00 5.24
408 496 2.505628 TTAACACGGTACAGACGCAA 57.494 45.000 0.00 0.00 34.00 4.85
410 498 1.219522 AACACGGTACAGACGCAAGC 61.220 55.000 0.00 0.00 45.62 4.01
411 499 2.430244 ACGGTACAGACGCAAGCG 60.430 61.111 13.50 13.50 46.03 4.68
412 500 3.838795 CGGTACAGACGCAAGCGC 61.839 66.667 15.09 0.00 44.19 5.92
413 501 2.432628 GGTACAGACGCAAGCGCT 60.433 61.111 15.09 2.64 44.19 5.92
414 502 2.445438 GGTACAGACGCAAGCGCTC 61.445 63.158 12.06 11.06 44.19 5.03
415 503 1.733041 GTACAGACGCAAGCGCTCA 60.733 57.895 12.06 0.83 44.19 4.26
416 504 1.078759 GTACAGACGCAAGCGCTCAT 61.079 55.000 12.06 0.00 44.19 2.90
417 505 0.454196 TACAGACGCAAGCGCTCATA 59.546 50.000 12.06 5.16 44.19 2.15
418 506 0.179100 ACAGACGCAAGCGCTCATAT 60.179 50.000 12.06 0.00 44.19 1.78
419 507 1.067060 ACAGACGCAAGCGCTCATATA 59.933 47.619 12.06 0.00 44.19 0.86
420 508 1.453524 CAGACGCAAGCGCTCATATAC 59.546 52.381 12.06 1.00 44.19 1.47
421 509 1.067060 AGACGCAAGCGCTCATATACA 59.933 47.619 12.06 0.00 44.19 2.29
422 510 1.190323 GACGCAAGCGCTCATATACAC 59.810 52.381 12.06 0.00 44.19 2.90
423 511 1.208259 CGCAAGCGCTCATATACACA 58.792 50.000 12.06 0.00 35.30 3.72
424 512 1.071239 CGCAAGCGCTCATATACACAC 60.071 52.381 12.06 0.00 35.30 3.82
425 513 1.071239 GCAAGCGCTCATATACACACG 60.071 52.381 12.06 0.00 34.30 4.49
426 514 1.071239 CAAGCGCTCATATACACACGC 60.071 52.381 12.06 0.00 46.20 5.34
427 515 2.588731 GCGCTCATATACACACGCA 58.411 52.632 0.00 0.00 45.25 5.24
428 516 1.139989 GCGCTCATATACACACGCAT 58.860 50.000 0.00 0.00 45.25 4.73
429 517 2.324860 GCGCTCATATACACACGCATA 58.675 47.619 0.00 0.00 45.25 3.14
430 518 2.090658 GCGCTCATATACACACGCATAC 59.909 50.000 0.00 0.00 45.25 2.39
431 519 3.305110 CGCTCATATACACACGCATACA 58.695 45.455 0.00 0.00 0.00 2.29
432 520 3.119628 CGCTCATATACACACGCATACAC 59.880 47.826 0.00 0.00 0.00 2.90
433 521 4.299155 GCTCATATACACACGCATACACT 58.701 43.478 0.00 0.00 0.00 3.55
434 522 4.383052 GCTCATATACACACGCATACACTC 59.617 45.833 0.00 0.00 0.00 3.51
435 523 5.508200 TCATATACACACGCATACACTCA 57.492 39.130 0.00 0.00 0.00 3.41
436 524 5.278604 TCATATACACACGCATACACTCAC 58.721 41.667 0.00 0.00 0.00 3.51
437 525 2.357327 TACACACGCATACACTCACC 57.643 50.000 0.00 0.00 0.00 4.02
438 526 0.320421 ACACACGCATACACTCACCC 60.320 55.000 0.00 0.00 0.00 4.61
439 527 1.019278 CACACGCATACACTCACCCC 61.019 60.000 0.00 0.00 0.00 4.95
440 528 1.192146 ACACGCATACACTCACCCCT 61.192 55.000 0.00 0.00 0.00 4.79
441 529 0.821517 CACGCATACACTCACCCCTA 59.178 55.000 0.00 0.00 0.00 3.53
442 530 1.412710 CACGCATACACTCACCCCTAT 59.587 52.381 0.00 0.00 0.00 2.57
443 531 1.412710 ACGCATACACTCACCCCTATG 59.587 52.381 0.00 0.00 0.00 2.23
444 532 1.686587 CGCATACACTCACCCCTATGA 59.313 52.381 0.00 0.00 0.00 2.15
445 533 2.102420 CGCATACACTCACCCCTATGAA 59.898 50.000 0.00 0.00 0.00 2.57
446 534 3.467803 GCATACACTCACCCCTATGAAC 58.532 50.000 0.00 0.00 0.00 3.18
447 535 3.118408 GCATACACTCACCCCTATGAACA 60.118 47.826 0.00 0.00 0.00 3.18
448 536 4.442706 CATACACTCACCCCTATGAACAC 58.557 47.826 0.00 0.00 0.00 3.32
449 537 2.334977 ACACTCACCCCTATGAACACA 58.665 47.619 0.00 0.00 0.00 3.72
450 538 2.038557 ACACTCACCCCTATGAACACAC 59.961 50.000 0.00 0.00 0.00 3.82
451 539 2.038426 CACTCACCCCTATGAACACACA 59.962 50.000 0.00 0.00 0.00 3.72
452 540 2.038557 ACTCACCCCTATGAACACACAC 59.961 50.000 0.00 0.00 0.00 3.82
453 541 2.038426 CTCACCCCTATGAACACACACA 59.962 50.000 0.00 0.00 0.00 3.72
454 542 2.151202 CACCCCTATGAACACACACAC 58.849 52.381 0.00 0.00 0.00 3.82
455 543 1.270625 ACCCCTATGAACACACACACG 60.271 52.381 0.00 0.00 0.00 4.49
456 544 0.796312 CCCTATGAACACACACACGC 59.204 55.000 0.00 0.00 0.00 5.34
457 545 1.507562 CCTATGAACACACACACGCA 58.492 50.000 0.00 0.00 0.00 5.24
458 546 1.194547 CCTATGAACACACACACGCAC 59.805 52.381 0.00 0.00 0.00 5.34
459 547 1.864082 CTATGAACACACACACGCACA 59.136 47.619 0.00 0.00 0.00 4.57
460 548 0.376852 ATGAACACACACACGCACAC 59.623 50.000 0.00 0.00 0.00 3.82
461 549 1.061887 GAACACACACACGCACACC 59.938 57.895 0.00 0.00 0.00 4.16
462 550 2.317685 GAACACACACACGCACACCC 62.318 60.000 0.00 0.00 0.00 4.61
463 551 2.513666 CACACACACGCACACCCT 60.514 61.111 0.00 0.00 0.00 4.34
464 552 1.227409 CACACACACGCACACCCTA 60.227 57.895 0.00 0.00 0.00 3.53
465 553 0.602638 CACACACACGCACACCCTAT 60.603 55.000 0.00 0.00 0.00 2.57
466 554 0.107831 ACACACACGCACACCCTATT 59.892 50.000 0.00 0.00 0.00 1.73
467 555 1.234821 CACACACGCACACCCTATTT 58.765 50.000 0.00 0.00 0.00 1.40
468 556 1.196808 CACACACGCACACCCTATTTC 59.803 52.381 0.00 0.00 0.00 2.17
469 557 1.071699 ACACACGCACACCCTATTTCT 59.928 47.619 0.00 0.00 0.00 2.52
470 558 2.300723 ACACACGCACACCCTATTTCTA 59.699 45.455 0.00 0.00 0.00 2.10
471 559 3.055385 ACACACGCACACCCTATTTCTAT 60.055 43.478 0.00 0.00 0.00 1.98
472 560 3.309682 CACACGCACACCCTATTTCTATG 59.690 47.826 0.00 0.00 0.00 2.23
473 561 3.196901 ACACGCACACCCTATTTCTATGA 59.803 43.478 0.00 0.00 0.00 2.15
474 562 3.804325 CACGCACACCCTATTTCTATGAG 59.196 47.826 0.00 0.00 0.00 2.90
475 563 2.802816 CGCACACCCTATTTCTATGAGC 59.197 50.000 0.00 0.00 0.00 4.26
476 564 3.741075 CGCACACCCTATTTCTATGAGCA 60.741 47.826 0.00 0.00 0.00 4.26
477 565 4.392940 GCACACCCTATTTCTATGAGCAT 58.607 43.478 0.00 0.00 0.00 3.79
478 566 4.453819 GCACACCCTATTTCTATGAGCATC 59.546 45.833 0.00 0.00 0.00 3.91
479 567 5.744300 GCACACCCTATTTCTATGAGCATCT 60.744 44.000 0.00 0.00 34.92 2.90
480 568 5.931146 CACACCCTATTTCTATGAGCATCTC 59.069 44.000 0.00 0.00 34.92 2.75
481 569 5.012561 ACACCCTATTTCTATGAGCATCTCC 59.987 44.000 0.00 0.00 34.92 3.71
482 570 4.221703 ACCCTATTTCTATGAGCATCTCCG 59.778 45.833 0.00 0.00 34.92 4.63
483 571 4.464244 CCCTATTTCTATGAGCATCTCCGA 59.536 45.833 0.00 0.00 34.92 4.55
484 572 5.047021 CCCTATTTCTATGAGCATCTCCGAA 60.047 44.000 0.00 0.00 34.92 4.30
485 573 6.459066 CCTATTTCTATGAGCATCTCCGAAA 58.541 40.000 0.00 0.00 34.92 3.46
486 574 6.589523 CCTATTTCTATGAGCATCTCCGAAAG 59.410 42.308 0.00 0.00 34.92 2.62
487 575 5.598416 TTTCTATGAGCATCTCCGAAAGA 57.402 39.130 0.00 0.00 38.72 2.52
488 576 4.576216 TCTATGAGCATCTCCGAAAGAC 57.424 45.455 0.00 0.00 36.65 3.01
489 577 4.211125 TCTATGAGCATCTCCGAAAGACT 58.789 43.478 0.00 0.00 36.65 3.24
490 578 2.662006 TGAGCATCTCCGAAAGACTG 57.338 50.000 0.00 0.00 36.65 3.51
491 579 2.171003 TGAGCATCTCCGAAAGACTGA 58.829 47.619 0.00 0.00 36.65 3.41
492 580 2.165234 TGAGCATCTCCGAAAGACTGAG 59.835 50.000 0.00 0.00 36.65 3.35
493 581 1.480137 AGCATCTCCGAAAGACTGAGG 59.520 52.381 0.00 0.00 36.65 3.86
494 582 1.472376 GCATCTCCGAAAGACTGAGGG 60.472 57.143 0.00 0.00 36.65 4.30
495 583 1.137872 CATCTCCGAAAGACTGAGGGG 59.862 57.143 0.00 0.00 36.65 4.79
496 584 0.614979 TCTCCGAAAGACTGAGGGGG 60.615 60.000 0.00 0.00 32.09 5.40
497 585 0.905337 CTCCGAAAGACTGAGGGGGT 60.905 60.000 0.00 0.00 0.00 4.95
498 586 1.192146 TCCGAAAGACTGAGGGGGTG 61.192 60.000 0.00 0.00 0.00 4.61
499 587 1.481056 CCGAAAGACTGAGGGGGTGT 61.481 60.000 0.00 0.00 0.00 4.16
500 588 0.396811 CGAAAGACTGAGGGGGTGTT 59.603 55.000 0.00 0.00 0.00 3.32
501 589 1.202770 CGAAAGACTGAGGGGGTGTTT 60.203 52.381 0.00 0.00 33.82 2.83
502 590 2.230660 GAAAGACTGAGGGGGTGTTTG 58.769 52.381 0.00 0.00 31.83 2.93
503 591 0.178990 AAGACTGAGGGGGTGTTTGC 60.179 55.000 0.00 0.00 0.00 3.68
504 592 1.062488 AGACTGAGGGGGTGTTTGCT 61.062 55.000 0.00 0.00 0.00 3.91
505 593 0.178990 GACTGAGGGGGTGTTTGCTT 60.179 55.000 0.00 0.00 0.00 3.91
506 594 0.468029 ACTGAGGGGGTGTTTGCTTG 60.468 55.000 0.00 0.00 0.00 4.01
507 595 1.809567 CTGAGGGGGTGTTTGCTTGC 61.810 60.000 0.00 0.00 0.00 4.01
508 596 1.832167 GAGGGGGTGTTTGCTTGCA 60.832 57.895 0.00 0.00 0.00 4.08
509 597 1.382420 AGGGGGTGTTTGCTTGCAA 60.382 52.632 3.70 3.70 0.00 4.08
510 598 1.069596 GGGGGTGTTTGCTTGCAAG 59.930 57.895 22.44 22.44 0.00 4.01
511 599 1.398958 GGGGGTGTTTGCTTGCAAGA 61.399 55.000 30.39 12.25 0.00 3.02
512 600 0.032540 GGGGTGTTTGCTTGCAAGAG 59.967 55.000 30.39 5.73 0.00 2.85
513 601 1.032014 GGGTGTTTGCTTGCAAGAGA 58.968 50.000 30.39 14.03 0.00 3.10
514 602 1.269257 GGGTGTTTGCTTGCAAGAGAC 60.269 52.381 30.39 21.82 0.00 3.36
515 603 1.678101 GGTGTTTGCTTGCAAGAGACT 59.322 47.619 30.39 0.00 0.00 3.24
516 604 2.878406 GGTGTTTGCTTGCAAGAGACTA 59.122 45.455 30.39 9.64 0.00 2.59
517 605 3.058639 GGTGTTTGCTTGCAAGAGACTAG 60.059 47.826 30.39 2.33 0.00 2.57
518 606 3.809832 GTGTTTGCTTGCAAGAGACTAGA 59.190 43.478 30.39 5.53 0.00 2.43
519 607 3.809832 TGTTTGCTTGCAAGAGACTAGAC 59.190 43.478 30.39 16.09 0.00 2.59
520 608 4.061596 GTTTGCTTGCAAGAGACTAGACT 58.938 43.478 30.39 0.00 0.00 3.24
521 609 4.342862 TTGCTTGCAAGAGACTAGACTT 57.657 40.909 30.39 0.00 0.00 3.01
522 610 4.342862 TGCTTGCAAGAGACTAGACTTT 57.657 40.909 30.39 0.00 0.00 2.66
523 611 4.708177 TGCTTGCAAGAGACTAGACTTTT 58.292 39.130 30.39 0.00 0.00 2.27
524 612 4.752101 TGCTTGCAAGAGACTAGACTTTTC 59.248 41.667 30.39 7.28 0.00 2.29
525 613 4.994217 GCTTGCAAGAGACTAGACTTTTCT 59.006 41.667 30.39 0.00 35.66 2.52
526 614 6.159988 GCTTGCAAGAGACTAGACTTTTCTA 58.840 40.000 30.39 0.00 32.75 2.10
535 623 2.935481 AGACTTTTCTAGTACCGGCG 57.065 50.000 0.00 0.00 37.17 6.46
536 624 2.440409 AGACTTTTCTAGTACCGGCGA 58.560 47.619 9.30 0.00 37.17 5.54
537 625 2.163211 AGACTTTTCTAGTACCGGCGAC 59.837 50.000 9.30 0.00 37.17 5.19
538 626 2.163211 GACTTTTCTAGTACCGGCGACT 59.837 50.000 9.30 13.70 37.17 4.18
539 627 3.347216 ACTTTTCTAGTACCGGCGACTA 58.653 45.455 9.30 14.41 34.56 2.59
540 628 3.758554 ACTTTTCTAGTACCGGCGACTAA 59.241 43.478 9.30 3.86 34.56 2.24
541 629 4.218417 ACTTTTCTAGTACCGGCGACTAAA 59.782 41.667 9.30 8.88 34.56 1.85
542 630 4.361451 TTTCTAGTACCGGCGACTAAAG 57.639 45.455 9.30 8.78 0.00 1.85
543 631 3.266510 TCTAGTACCGGCGACTAAAGA 57.733 47.619 9.30 10.62 0.00 2.52
544 632 3.609853 TCTAGTACCGGCGACTAAAGAA 58.390 45.455 9.30 0.00 0.00 2.52
545 633 4.009675 TCTAGTACCGGCGACTAAAGAAA 58.990 43.478 9.30 0.00 0.00 2.52
546 634 3.665745 AGTACCGGCGACTAAAGAAAA 57.334 42.857 9.30 0.00 0.00 2.29
547 635 3.993920 AGTACCGGCGACTAAAGAAAAA 58.006 40.909 9.30 0.00 0.00 1.94
571 659 8.768501 AAAAACCTCCAGTAGATTCTTTTTCT 57.231 30.769 0.00 0.00 0.00 2.52
572 660 9.862149 AAAAACCTCCAGTAGATTCTTTTTCTA 57.138 29.630 0.00 0.00 0.00 2.10
573 661 9.508642 AAAACCTCCAGTAGATTCTTTTTCTAG 57.491 33.333 0.00 0.00 0.00 2.43
574 662 7.800300 ACCTCCAGTAGATTCTTTTTCTAGT 57.200 36.000 0.00 0.00 31.03 2.57
575 663 7.842982 ACCTCCAGTAGATTCTTTTTCTAGTC 58.157 38.462 0.00 0.00 28.93 2.59
576 664 7.093245 ACCTCCAGTAGATTCTTTTTCTAGTCC 60.093 40.741 0.00 0.00 28.93 3.85
577 665 7.184067 TCCAGTAGATTCTTTTTCTAGTCCC 57.816 40.000 0.00 0.00 28.93 4.46
578 666 6.960542 TCCAGTAGATTCTTTTTCTAGTCCCT 59.039 38.462 0.00 0.00 28.93 4.20
579 667 7.458170 TCCAGTAGATTCTTTTTCTAGTCCCTT 59.542 37.037 0.00 0.00 28.93 3.95
580 668 8.103935 CCAGTAGATTCTTTTTCTAGTCCCTTT 58.896 37.037 0.00 0.00 28.93 3.11
581 669 9.508642 CAGTAGATTCTTTTTCTAGTCCCTTTT 57.491 33.333 0.00 0.00 28.93 2.27
584 672 8.410673 AGATTCTTTTTCTAGTCCCTTTTTCC 57.589 34.615 0.00 0.00 0.00 3.13
585 673 6.971726 TTCTTTTTCTAGTCCCTTTTTCCC 57.028 37.500 0.00 0.00 0.00 3.97
586 674 5.067954 TCTTTTTCTAGTCCCTTTTTCCCG 58.932 41.667 0.00 0.00 0.00 5.14
587 675 4.442401 TTTTCTAGTCCCTTTTTCCCGT 57.558 40.909 0.00 0.00 0.00 5.28
588 676 4.442401 TTTCTAGTCCCTTTTTCCCGTT 57.558 40.909 0.00 0.00 0.00 4.44
589 677 4.442401 TTCTAGTCCCTTTTTCCCGTTT 57.558 40.909 0.00 0.00 0.00 3.60
590 678 3.746940 TCTAGTCCCTTTTTCCCGTTTG 58.253 45.455 0.00 0.00 0.00 2.93
591 679 1.699730 AGTCCCTTTTTCCCGTTTGG 58.300 50.000 0.00 0.00 0.00 3.28
592 680 1.063492 AGTCCCTTTTTCCCGTTTGGT 60.063 47.619 0.00 0.00 34.77 3.67
593 681 1.758280 GTCCCTTTTTCCCGTTTGGTT 59.242 47.619 0.00 0.00 34.77 3.67
594 682 2.957680 GTCCCTTTTTCCCGTTTGGTTA 59.042 45.455 0.00 0.00 34.77 2.85
595 683 2.957680 TCCCTTTTTCCCGTTTGGTTAC 59.042 45.455 0.00 0.00 34.77 2.50
596 684 2.694109 CCCTTTTTCCCGTTTGGTTACA 59.306 45.455 0.00 0.00 34.77 2.41
597 685 3.322541 CCCTTTTTCCCGTTTGGTTACAT 59.677 43.478 0.00 0.00 34.77 2.29
598 686 4.523558 CCCTTTTTCCCGTTTGGTTACATA 59.476 41.667 0.00 0.00 34.77 2.29
599 687 5.010820 CCCTTTTTCCCGTTTGGTTACATAA 59.989 40.000 0.00 0.00 34.77 1.90
600 688 6.462628 CCCTTTTTCCCGTTTGGTTACATAAA 60.463 38.462 0.00 0.00 34.77 1.40
601 689 7.156000 CCTTTTTCCCGTTTGGTTACATAAAT 58.844 34.615 0.00 0.00 34.77 1.40
602 690 8.305317 CCTTTTTCCCGTTTGGTTACATAAATA 58.695 33.333 0.00 0.00 34.77 1.40
603 691 9.131416 CTTTTTCCCGTTTGGTTACATAAATAC 57.869 33.333 0.00 0.00 34.77 1.89
604 692 7.999450 TTTCCCGTTTGGTTACATAAATACT 57.001 32.000 0.00 0.00 34.77 2.12
605 693 9.512588 TTTTCCCGTTTGGTTACATAAATACTA 57.487 29.630 0.00 0.00 34.77 1.82
606 694 9.512588 TTTCCCGTTTGGTTACATAAATACTAA 57.487 29.630 0.00 0.00 34.77 2.24
607 695 9.512588 TTCCCGTTTGGTTACATAAATACTAAA 57.487 29.630 0.00 0.00 34.77 1.85
608 696 9.512588 TCCCGTTTGGTTACATAAATACTAAAA 57.487 29.630 0.00 0.00 34.77 1.52
609 697 9.777575 CCCGTTTGGTTACATAAATACTAAAAG 57.222 33.333 0.00 0.00 0.00 2.27
639 727 6.403866 TTTTTAGTCTAGTCCGTGTAACCA 57.596 37.500 0.00 0.00 0.00 3.67
640 728 6.403866 TTTTAGTCTAGTCCGTGTAACCAA 57.596 37.500 0.00 0.00 0.00 3.67
641 729 6.403866 TTTAGTCTAGTCCGTGTAACCAAA 57.596 37.500 0.00 0.00 0.00 3.28
642 730 4.248691 AGTCTAGTCCGTGTAACCAAAC 57.751 45.455 0.00 0.00 0.00 2.93
643 731 3.638160 AGTCTAGTCCGTGTAACCAAACA 59.362 43.478 0.00 0.00 0.00 2.83
644 732 3.737774 GTCTAGTCCGTGTAACCAAACAC 59.262 47.826 0.00 0.00 45.10 3.32
645 733 1.957668 AGTCCGTGTAACCAAACACC 58.042 50.000 1.82 0.00 45.66 4.16
646 734 0.946528 GTCCGTGTAACCAAACACCC 59.053 55.000 1.82 0.00 45.66 4.61
647 735 0.179023 TCCGTGTAACCAAACACCCC 60.179 55.000 1.82 0.00 45.66 4.95
648 736 1.174078 CCGTGTAACCAAACACCCCC 61.174 60.000 1.82 0.00 45.66 5.40
649 737 0.179012 CGTGTAACCAAACACCCCCT 60.179 55.000 1.82 0.00 45.66 4.79
650 738 1.324383 GTGTAACCAAACACCCCCTG 58.676 55.000 0.00 0.00 43.23 4.45
651 739 1.133730 GTGTAACCAAACACCCCCTGA 60.134 52.381 0.00 0.00 43.23 3.86
652 740 1.144093 TGTAACCAAACACCCCCTGAG 59.856 52.381 0.00 0.00 0.00 3.35
653 741 0.111639 TAACCAAACACCCCCTGAGC 59.888 55.000 0.00 0.00 0.00 4.26
654 742 2.283173 CCAAACACCCCCTGAGCC 60.283 66.667 0.00 0.00 0.00 4.70
655 743 2.520458 CAAACACCCCCTGAGCCA 59.480 61.111 0.00 0.00 0.00 4.75
656 744 1.077265 CAAACACCCCCTGAGCCAT 59.923 57.895 0.00 0.00 0.00 4.40
657 745 1.077265 AAACACCCCCTGAGCCATG 59.923 57.895 0.00 0.00 0.00 3.66
658 746 3.590466 AACACCCCCTGAGCCATGC 62.590 63.158 0.00 0.00 0.00 4.06
659 747 4.051167 CACCCCCTGAGCCATGCA 62.051 66.667 0.00 0.00 0.00 3.96
660 748 3.025599 ACCCCCTGAGCCATGCAT 61.026 61.111 0.00 0.00 0.00 3.96
661 749 2.203451 CCCCCTGAGCCATGCATC 60.203 66.667 0.00 0.00 0.00 3.91
662 750 2.593725 CCCCTGAGCCATGCATCG 60.594 66.667 0.00 0.00 0.00 3.84
663 751 2.191375 CCCTGAGCCATGCATCGT 59.809 61.111 0.00 0.00 0.00 3.73
664 752 1.890979 CCCTGAGCCATGCATCGTC 60.891 63.158 0.00 0.00 0.00 4.20
665 753 2.242572 CCTGAGCCATGCATCGTCG 61.243 63.158 0.00 0.00 0.00 5.12
666 754 2.202919 TGAGCCATGCATCGTCGG 60.203 61.111 0.00 0.00 0.00 4.79
670 758 0.464373 AGCCATGCATCGTCGGAAAT 60.464 50.000 0.00 0.00 0.00 2.17
673 761 2.735126 GCCATGCATCGTCGGAAATTTT 60.735 45.455 0.00 0.00 0.00 1.82
675 763 3.427368 CCATGCATCGTCGGAAATTTTGA 60.427 43.478 0.00 0.00 0.00 2.69
677 765 4.230314 TGCATCGTCGGAAATTTTGAAA 57.770 36.364 0.00 0.00 0.00 2.69
678 766 4.804108 TGCATCGTCGGAAATTTTGAAAT 58.196 34.783 0.00 0.00 0.00 2.17
683 771 8.050170 GCATCGTCGGAAATTTTGAAATAAATC 58.950 33.333 0.00 0.00 0.00 2.17
684 772 9.289303 CATCGTCGGAAATTTTGAAATAAATCT 57.711 29.630 0.00 0.00 0.00 2.40
707 795 8.306313 TCTAGAAATAAATGTGAGCACTAGGA 57.694 34.615 1.99 0.00 0.00 2.94
708 796 8.198109 TCTAGAAATAAATGTGAGCACTAGGAC 58.802 37.037 1.99 0.00 0.00 3.85
709 797 6.951971 AGAAATAAATGTGAGCACTAGGACT 58.048 36.000 1.99 0.00 0.00 3.85
710 798 7.398024 AGAAATAAATGTGAGCACTAGGACTT 58.602 34.615 1.99 0.00 0.00 3.01
711 799 8.540388 AGAAATAAATGTGAGCACTAGGACTTA 58.460 33.333 1.99 0.00 0.00 2.24
713 801 8.494016 AATAAATGTGAGCACTAGGACTTAAC 57.506 34.615 1.99 0.00 0.00 2.01
714 802 5.746990 AATGTGAGCACTAGGACTTAACT 57.253 39.130 1.99 0.00 0.00 2.24
715 803 4.785511 TGTGAGCACTAGGACTTAACTC 57.214 45.455 1.99 0.00 0.00 3.01
716 804 4.408276 TGTGAGCACTAGGACTTAACTCT 58.592 43.478 1.99 0.00 0.00 3.24
717 805 5.567430 TGTGAGCACTAGGACTTAACTCTA 58.433 41.667 1.99 0.00 0.00 2.43
718 806 5.648526 TGTGAGCACTAGGACTTAACTCTAG 59.351 44.000 1.99 0.00 37.20 2.43
719 807 5.648960 GTGAGCACTAGGACTTAACTCTAGT 59.351 44.000 0.00 0.00 42.89 2.57
723 811 4.279982 ACTAGGACTTAACTCTAGTGGGC 58.720 47.826 0.00 0.00 41.24 5.36
724 812 3.476485 AGGACTTAACTCTAGTGGGCT 57.524 47.619 0.00 0.00 0.00 5.19
725 813 3.100671 AGGACTTAACTCTAGTGGGCTG 58.899 50.000 0.00 0.00 0.00 4.85
726 814 2.168728 GGACTTAACTCTAGTGGGCTGG 59.831 54.545 0.00 0.00 0.00 4.85
727 815 3.097614 GACTTAACTCTAGTGGGCTGGA 58.902 50.000 0.00 0.00 0.00 3.86
734 822 3.903530 TCTAGTGGGCTGGAGATATCA 57.096 47.619 5.32 0.00 0.00 2.15
735 823 3.501349 TCTAGTGGGCTGGAGATATCAC 58.499 50.000 5.32 0.00 0.00 3.06
736 824 2.180946 AGTGGGCTGGAGATATCACA 57.819 50.000 5.32 2.81 0.00 3.58
737 825 2.045524 AGTGGGCTGGAGATATCACAG 58.954 52.381 18.11 18.11 35.40 3.66
738 826 1.765314 GTGGGCTGGAGATATCACAGT 59.235 52.381 21.32 0.00 34.79 3.55
739 827 2.042464 TGGGCTGGAGATATCACAGTC 58.958 52.381 21.32 19.94 36.17 3.51
740 828 2.829741 GGCTGGAGATATCACAGTCC 57.170 55.000 21.32 18.91 34.79 3.85
741 829 1.346068 GGCTGGAGATATCACAGTCCC 59.654 57.143 21.32 14.45 34.79 4.46
742 830 2.324541 GCTGGAGATATCACAGTCCCT 58.675 52.381 21.32 0.00 34.79 4.20
743 831 2.298729 GCTGGAGATATCACAGTCCCTC 59.701 54.545 21.32 7.40 34.79 4.30
744 832 3.843422 CTGGAGATATCACAGTCCCTCT 58.157 50.000 15.51 0.00 0.00 3.69
745 833 4.751340 GCTGGAGATATCACAGTCCCTCTA 60.751 50.000 21.32 1.29 34.79 2.43
746 834 5.389520 CTGGAGATATCACAGTCCCTCTAA 58.610 45.833 15.51 0.00 0.00 2.10
747 835 5.141182 TGGAGATATCACAGTCCCTCTAAC 58.859 45.833 5.32 0.00 0.00 2.34
748 836 4.525100 GGAGATATCACAGTCCCTCTAACC 59.475 50.000 5.32 0.00 0.00 2.85
749 837 4.145807 AGATATCACAGTCCCTCTAACCG 58.854 47.826 5.32 0.00 0.00 4.44
750 838 2.233305 ATCACAGTCCCTCTAACCGT 57.767 50.000 0.00 0.00 0.00 4.83
751 839 1.542492 TCACAGTCCCTCTAACCGTC 58.458 55.000 0.00 0.00 0.00 4.79
752 840 0.531200 CACAGTCCCTCTAACCGTCC 59.469 60.000 0.00 0.00 0.00 4.79
753 841 0.113776 ACAGTCCCTCTAACCGTCCA 59.886 55.000 0.00 0.00 0.00 4.02
754 842 0.818296 CAGTCCCTCTAACCGTCCAG 59.182 60.000 0.00 0.00 0.00 3.86
755 843 0.971447 AGTCCCTCTAACCGTCCAGC 60.971 60.000 0.00 0.00 0.00 4.85
756 844 1.684734 TCCCTCTAACCGTCCAGCC 60.685 63.158 0.00 0.00 0.00 4.85
757 845 1.987855 CCCTCTAACCGTCCAGCCA 60.988 63.158 0.00 0.00 0.00 4.75
758 846 1.517832 CCTCTAACCGTCCAGCCAG 59.482 63.158 0.00 0.00 0.00 4.85
759 847 1.517832 CTCTAACCGTCCAGCCAGG 59.482 63.158 0.00 0.00 39.47 4.45
760 848 1.229082 TCTAACCGTCCAGCCAGGT 60.229 57.895 0.00 0.00 40.50 4.00
762 850 0.673644 CTAACCGTCCAGCCAGGTTG 60.674 60.000 9.12 0.00 46.54 3.77
763 851 2.119484 TAACCGTCCAGCCAGGTTGG 62.119 60.000 16.42 16.42 46.54 3.77
764 852 3.953775 CCGTCCAGCCAGGTTGGT 61.954 66.667 21.23 0.00 40.46 3.67
765 853 2.669569 CGTCCAGCCAGGTTGGTG 60.670 66.667 21.23 11.83 40.46 4.17
766 854 2.985847 GTCCAGCCAGGTTGGTGC 60.986 66.667 21.23 12.10 40.46 5.01
767 855 4.641645 TCCAGCCAGGTTGGTGCG 62.642 66.667 21.23 0.00 40.46 5.34
770 858 4.666253 AGCCAGGTTGGTGCGCAT 62.666 61.111 15.91 0.00 40.46 4.73
771 859 4.424566 GCCAGGTTGGTGCGCATG 62.425 66.667 15.91 6.38 40.46 4.06
772 860 3.751246 CCAGGTTGGTGCGCATGG 61.751 66.667 15.91 12.88 31.35 3.66
773 861 2.672651 CAGGTTGGTGCGCATGGA 60.673 61.111 15.91 0.00 0.00 3.41
774 862 2.360350 AGGTTGGTGCGCATGGAG 60.360 61.111 15.91 0.00 0.00 3.86
775 863 2.359850 GGTTGGTGCGCATGGAGA 60.360 61.111 15.91 0.00 0.00 3.71
776 864 2.401766 GGTTGGTGCGCATGGAGAG 61.402 63.158 15.91 0.00 0.00 3.20
777 865 1.375908 GTTGGTGCGCATGGAGAGA 60.376 57.895 15.91 0.00 0.00 3.10
778 866 0.745845 GTTGGTGCGCATGGAGAGAT 60.746 55.000 15.91 0.00 0.00 2.75
779 867 0.745486 TTGGTGCGCATGGAGAGATG 60.745 55.000 15.91 0.00 0.00 2.90
780 868 1.153289 GGTGCGCATGGAGAGATGT 60.153 57.895 15.91 0.00 0.00 3.06
781 869 0.745845 GGTGCGCATGGAGAGATGTT 60.746 55.000 15.91 0.00 0.00 2.71
782 870 1.089920 GTGCGCATGGAGAGATGTTT 58.910 50.000 15.91 0.00 0.00 2.83
783 871 1.470098 GTGCGCATGGAGAGATGTTTT 59.530 47.619 15.91 0.00 0.00 2.43
784 872 2.095059 GTGCGCATGGAGAGATGTTTTT 60.095 45.455 15.91 0.00 0.00 1.94
790 878 5.525012 CGCATGGAGAGATGTTTTTGAGATA 59.475 40.000 0.00 0.00 0.00 1.98
823 911 6.905076 CGATTATTTTTACACGAGAACATGGG 59.095 38.462 0.00 0.00 0.00 4.00
896 984 3.420904 CGAAAAAGGCGTAACAAAAGCTC 59.579 43.478 0.00 0.00 32.56 4.09
903 991 0.891904 GTAACAAAAGCTCCGCCCCA 60.892 55.000 0.00 0.00 0.00 4.96
965 1053 2.565834 ACTCGCTTACCCTAGCTTCAAA 59.434 45.455 0.00 0.00 39.03 2.69
1353 1441 3.338676 GATGGATCGGCGTTCGGC 61.339 66.667 6.85 8.66 39.77 5.54
1683 1771 5.007234 TCGATTAGATGCAAATTTACGGTGG 59.993 40.000 0.00 0.00 0.00 4.61
1897 1986 1.276145 GACGTGCTGTCTGTTCGGTC 61.276 60.000 0.00 0.00 44.58 4.79
2057 2147 8.405531 TGTTTTGTAGAATTTTTCTGTCAGAGG 58.594 33.333 2.12 0.00 40.94 3.69
2215 2306 4.034742 AGTTGTAAGCGTGTGTTGGTTTAG 59.965 41.667 0.00 0.00 0.00 1.85
2242 2333 0.178767 TCTGCAGCTGTGACTTGTGT 59.821 50.000 16.64 0.00 0.00 3.72
2253 2344 3.627123 TGTGACTTGTGTCTTGATGGTTG 59.373 43.478 0.00 0.00 43.29 3.77
2397 2494 4.380531 CAAGTGAGGTACAGAAAGCTTCA 58.619 43.478 0.00 0.00 0.00 3.02
2415 2512 2.315176 TCATCTCCTAGAGAAGCTGCC 58.685 52.381 0.00 0.00 42.27 4.85
2476 2573 8.993121 CACTATGTGTACTTGTTCTTTTGAGAT 58.007 33.333 0.00 0.00 0.00 2.75
2504 2601 3.695816 GCACTCCACACTTTGAAACTTC 58.304 45.455 0.00 0.00 0.00 3.01
2609 2706 2.791347 TTGCTATTTAAGGCCGTCCA 57.209 45.000 0.00 0.00 33.74 4.02
2880 2980 0.041576 GTGCGACCTTCCGTTTGAAC 60.042 55.000 0.00 0.00 0.00 3.18
2882 2982 0.942252 GCGACCTTCCGTTTGAACTT 59.058 50.000 0.00 0.00 0.00 2.66
2883 2983 1.070108 GCGACCTTCCGTTTGAACTTC 60.070 52.381 0.00 0.00 0.00 3.01
2906 3010 7.447374 TCGTGAAAAATGTCAGGAATTATGT 57.553 32.000 0.00 0.00 38.96 2.29
2915 3019 4.823442 TGTCAGGAATTATGTCCATGCATC 59.177 41.667 0.00 0.00 40.48 3.91
3058 3162 1.145803 GTAGCAGTCGGTGTTGTTCC 58.854 55.000 0.00 0.00 0.00 3.62
3108 3212 4.378774 TGCAAAACCTTTCATCACAATGG 58.621 39.130 0.00 0.00 33.42 3.16
3176 3280 3.891049 AGGAGAATTGTAGGCCATCAAC 58.109 45.455 5.01 0.00 0.00 3.18
3177 3281 3.525199 AGGAGAATTGTAGGCCATCAACT 59.475 43.478 5.01 0.00 0.00 3.16
3178 3282 4.721776 AGGAGAATTGTAGGCCATCAACTA 59.278 41.667 5.01 0.00 0.00 2.24
3179 3283 5.370880 AGGAGAATTGTAGGCCATCAACTAT 59.629 40.000 5.01 0.00 0.00 2.12
3180 3284 6.558775 AGGAGAATTGTAGGCCATCAACTATA 59.441 38.462 5.01 0.00 0.00 1.31
3181 3285 7.072454 AGGAGAATTGTAGGCCATCAACTATAA 59.928 37.037 5.01 0.00 0.00 0.98
3192 3296 8.424133 AGGCCATCAACTATAAATTGGATTTTC 58.576 33.333 5.01 0.00 33.82 2.29
3317 3422 7.748683 TGAAAACTACGCTAACAAATTGCTATG 59.251 33.333 0.00 0.00 0.00 2.23
3322 3427 3.621794 GCTAACAAATTGCTATGCGGAG 58.378 45.455 0.00 0.00 0.00 4.63
3324 3429 3.764885 AACAAATTGCTATGCGGAGAC 57.235 42.857 0.00 0.00 0.00 3.36
3344 3449 6.254804 GGAGACGCAAAACTTGTTTATTTTGT 59.745 34.615 10.23 0.00 44.22 2.83
3401 3506 3.069729 GGGATAACTACGGTGCTGAAGAT 59.930 47.826 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.103103 GAGCCGCCACTTTTCCGC 62.103 66.667 0.00 0.00 0.00 5.54
1 2 3.431725 GGAGCCGCCACTTTTCCG 61.432 66.667 0.00 0.00 36.34 4.30
2 3 3.431725 CGGAGCCGCCACTTTTCC 61.432 66.667 0.00 0.00 35.94 3.13
3 4 1.745489 ATCGGAGCCGCCACTTTTC 60.745 57.895 3.59 0.00 39.59 2.29
20 21 1.903877 CTCCTCACCCTTGCCGTCAT 61.904 60.000 0.00 0.00 0.00 3.06
21 22 2.525629 TCCTCACCCTTGCCGTCA 60.526 61.111 0.00 0.00 0.00 4.35
29 30 4.787280 CTCCGGCCTCCTCACCCT 62.787 72.222 0.00 0.00 0.00 4.34
109 110 3.411418 CTGCCGCTGTCGTATCCGT 62.411 63.158 0.00 0.00 35.01 4.69
131 133 2.359169 GCCAGATCCGACCTCCACA 61.359 63.158 0.00 0.00 0.00 4.17
133 135 3.147595 CGCCAGATCCGACCTCCA 61.148 66.667 0.00 0.00 0.00 3.86
185 187 3.443045 CCTCCCGTTGCACCATGC 61.443 66.667 0.00 0.00 45.29 4.06
202 204 3.426568 GTGAGGTCGCTGCCTTGC 61.427 66.667 0.00 0.00 39.34 4.01
218 220 1.153249 CACTTCCCACACACACCGT 60.153 57.895 0.00 0.00 0.00 4.83
224 226 1.148273 GTGCCTCACTTCCCACACA 59.852 57.895 0.00 0.00 0.00 3.72
228 230 1.053835 TGACAGTGCCTCACTTCCCA 61.054 55.000 0.00 0.00 42.59 4.37
345 433 8.846943 TGTAGATGCAAAAAGAATTCTACTCA 57.153 30.769 8.75 3.62 32.52 3.41
346 434 9.928236 GATGTAGATGCAAAAAGAATTCTACTC 57.072 33.333 8.75 10.28 32.52 2.59
347 435 9.453572 TGATGTAGATGCAAAAAGAATTCTACT 57.546 29.630 8.75 0.00 32.52 2.57
350 438 8.195436 CCATGATGTAGATGCAAAAAGAATTCT 58.805 33.333 0.88 0.88 0.00 2.40
351 439 8.192774 TCCATGATGTAGATGCAAAAAGAATTC 58.807 33.333 0.00 0.00 0.00 2.17
354 442 6.885918 TCTCCATGATGTAGATGCAAAAAGAA 59.114 34.615 0.00 0.00 0.00 2.52
355 443 6.417258 TCTCCATGATGTAGATGCAAAAAGA 58.583 36.000 0.00 0.00 0.00 2.52
356 444 6.541278 TCTCTCCATGATGTAGATGCAAAAAG 59.459 38.462 0.00 0.00 0.00 2.27
357 445 6.317140 GTCTCTCCATGATGTAGATGCAAAAA 59.683 38.462 0.00 0.00 0.00 1.94
358 446 5.819379 GTCTCTCCATGATGTAGATGCAAAA 59.181 40.000 0.00 0.00 0.00 2.44
359 447 5.363101 GTCTCTCCATGATGTAGATGCAAA 58.637 41.667 0.00 0.00 0.00 3.68
389 477 2.396601 CTTGCGTCTGTACCGTGTTAA 58.603 47.619 0.00 0.00 0.00 2.01
390 478 1.931709 GCTTGCGTCTGTACCGTGTTA 60.932 52.381 0.00 0.00 0.00 2.41
391 479 1.219522 GCTTGCGTCTGTACCGTGTT 61.220 55.000 0.00 0.00 0.00 3.32
392 480 1.663702 GCTTGCGTCTGTACCGTGT 60.664 57.895 0.00 0.00 0.00 4.49
393 481 2.716828 CGCTTGCGTCTGTACCGTG 61.717 63.158 6.86 0.00 0.00 4.94
394 482 2.430244 CGCTTGCGTCTGTACCGT 60.430 61.111 6.86 0.00 0.00 4.83
395 483 3.838795 GCGCTTGCGTCTGTACCG 61.839 66.667 16.38 0.00 0.00 4.02
396 484 2.432628 AGCGCTTGCGTCTGTACC 60.433 61.111 16.38 0.00 45.69 3.34
397 485 1.078759 ATGAGCGCTTGCGTCTGTAC 61.079 55.000 13.26 0.00 45.69 2.90
398 486 0.454196 TATGAGCGCTTGCGTCTGTA 59.546 50.000 13.26 6.26 45.69 2.74
399 487 0.179100 ATATGAGCGCTTGCGTCTGT 60.179 50.000 13.26 7.66 45.69 3.41
400 488 1.453524 GTATATGAGCGCTTGCGTCTG 59.546 52.381 13.26 0.00 45.69 3.51
401 489 1.067060 TGTATATGAGCGCTTGCGTCT 59.933 47.619 13.26 13.17 45.69 4.18
402 490 1.190323 GTGTATATGAGCGCTTGCGTC 59.810 52.381 13.26 12.36 45.69 5.19
403 491 1.209128 GTGTATATGAGCGCTTGCGT 58.791 50.000 13.26 3.24 45.69 5.24
404 492 1.071239 GTGTGTATATGAGCGCTTGCG 60.071 52.381 13.26 10.90 45.69 4.85
405 493 1.071239 CGTGTGTATATGAGCGCTTGC 60.071 52.381 13.26 0.00 39.58 4.01
406 494 1.071239 GCGTGTGTATATGAGCGCTTG 60.071 52.381 13.26 0.00 41.37 4.01
407 495 1.209128 GCGTGTGTATATGAGCGCTT 58.791 50.000 13.26 0.00 41.37 4.68
408 496 0.102300 TGCGTGTGTATATGAGCGCT 59.898 50.000 11.27 11.27 44.34 5.92
409 497 1.139989 ATGCGTGTGTATATGAGCGC 58.860 50.000 0.00 0.00 44.29 5.92
410 498 3.119628 GTGTATGCGTGTGTATATGAGCG 59.880 47.826 0.00 0.00 0.00 5.03
411 499 4.299155 AGTGTATGCGTGTGTATATGAGC 58.701 43.478 0.00 0.00 0.00 4.26
412 500 5.399596 GTGAGTGTATGCGTGTGTATATGAG 59.600 44.000 0.00 0.00 0.00 2.90
413 501 5.278604 GTGAGTGTATGCGTGTGTATATGA 58.721 41.667 0.00 0.00 0.00 2.15
414 502 4.444388 GGTGAGTGTATGCGTGTGTATATG 59.556 45.833 0.00 0.00 0.00 1.78
415 503 4.500887 GGGTGAGTGTATGCGTGTGTATAT 60.501 45.833 0.00 0.00 0.00 0.86
416 504 3.181484 GGGTGAGTGTATGCGTGTGTATA 60.181 47.826 0.00 0.00 0.00 1.47
417 505 2.418197 GGGTGAGTGTATGCGTGTGTAT 60.418 50.000 0.00 0.00 0.00 2.29
418 506 1.067425 GGGTGAGTGTATGCGTGTGTA 60.067 52.381 0.00 0.00 0.00 2.90
419 507 0.320421 GGGTGAGTGTATGCGTGTGT 60.320 55.000 0.00 0.00 0.00 3.72
420 508 1.019278 GGGGTGAGTGTATGCGTGTG 61.019 60.000 0.00 0.00 0.00 3.82
421 509 1.192146 AGGGGTGAGTGTATGCGTGT 61.192 55.000 0.00 0.00 0.00 4.49
422 510 0.821517 TAGGGGTGAGTGTATGCGTG 59.178 55.000 0.00 0.00 0.00 5.34
423 511 1.412710 CATAGGGGTGAGTGTATGCGT 59.587 52.381 0.00 0.00 0.00 5.24
424 512 1.686587 TCATAGGGGTGAGTGTATGCG 59.313 52.381 0.00 0.00 0.00 4.73
425 513 3.118408 TGTTCATAGGGGTGAGTGTATGC 60.118 47.826 0.00 0.00 0.00 3.14
426 514 4.081142 TGTGTTCATAGGGGTGAGTGTATG 60.081 45.833 0.00 0.00 0.00 2.39
427 515 4.081087 GTGTGTTCATAGGGGTGAGTGTAT 60.081 45.833 0.00 0.00 0.00 2.29
428 516 3.259876 GTGTGTTCATAGGGGTGAGTGTA 59.740 47.826 0.00 0.00 0.00 2.90
429 517 2.038557 GTGTGTTCATAGGGGTGAGTGT 59.961 50.000 0.00 0.00 0.00 3.55
430 518 2.038426 TGTGTGTTCATAGGGGTGAGTG 59.962 50.000 0.00 0.00 0.00 3.51
431 519 2.038557 GTGTGTGTTCATAGGGGTGAGT 59.961 50.000 0.00 0.00 0.00 3.41
432 520 2.038426 TGTGTGTGTTCATAGGGGTGAG 59.962 50.000 0.00 0.00 0.00 3.51
433 521 2.050918 TGTGTGTGTTCATAGGGGTGA 58.949 47.619 0.00 0.00 0.00 4.02
434 522 2.151202 GTGTGTGTGTTCATAGGGGTG 58.849 52.381 0.00 0.00 0.00 4.61
435 523 1.270625 CGTGTGTGTGTTCATAGGGGT 60.271 52.381 0.00 0.00 0.00 4.95
436 524 1.438651 CGTGTGTGTGTTCATAGGGG 58.561 55.000 0.00 0.00 0.00 4.79
437 525 0.796312 GCGTGTGTGTGTTCATAGGG 59.204 55.000 0.00 0.00 0.00 3.53
438 526 1.194547 GTGCGTGTGTGTGTTCATAGG 59.805 52.381 0.00 0.00 0.00 2.57
439 527 1.864082 TGTGCGTGTGTGTGTTCATAG 59.136 47.619 0.00 0.00 0.00 2.23
440 528 1.595328 GTGTGCGTGTGTGTGTTCATA 59.405 47.619 0.00 0.00 0.00 2.15
441 529 0.376852 GTGTGCGTGTGTGTGTTCAT 59.623 50.000 0.00 0.00 0.00 2.57
442 530 1.640210 GGTGTGCGTGTGTGTGTTCA 61.640 55.000 0.00 0.00 0.00 3.18
443 531 1.061887 GGTGTGCGTGTGTGTGTTC 59.938 57.895 0.00 0.00 0.00 3.18
444 532 2.403378 GGGTGTGCGTGTGTGTGTT 61.403 57.895 0.00 0.00 0.00 3.32
445 533 1.962321 TAGGGTGTGCGTGTGTGTGT 61.962 55.000 0.00 0.00 0.00 3.72
446 534 0.602638 ATAGGGTGTGCGTGTGTGTG 60.603 55.000 0.00 0.00 0.00 3.82
447 535 0.107831 AATAGGGTGTGCGTGTGTGT 59.892 50.000 0.00 0.00 0.00 3.72
448 536 1.196808 GAAATAGGGTGTGCGTGTGTG 59.803 52.381 0.00 0.00 0.00 3.82
449 537 1.071699 AGAAATAGGGTGTGCGTGTGT 59.928 47.619 0.00 0.00 0.00 3.72
450 538 1.808411 AGAAATAGGGTGTGCGTGTG 58.192 50.000 0.00 0.00 0.00 3.82
451 539 3.196901 TCATAGAAATAGGGTGTGCGTGT 59.803 43.478 0.00 0.00 0.00 4.49
452 540 3.792401 TCATAGAAATAGGGTGTGCGTG 58.208 45.455 0.00 0.00 0.00 5.34
453 541 3.741388 GCTCATAGAAATAGGGTGTGCGT 60.741 47.826 0.00 0.00 0.00 5.24
454 542 2.802816 GCTCATAGAAATAGGGTGTGCG 59.197 50.000 0.00 0.00 0.00 5.34
455 543 3.808728 TGCTCATAGAAATAGGGTGTGC 58.191 45.455 0.00 0.00 0.00 4.57
456 544 5.862845 AGATGCTCATAGAAATAGGGTGTG 58.137 41.667 0.00 0.00 0.00 3.82
457 545 5.012561 GGAGATGCTCATAGAAATAGGGTGT 59.987 44.000 0.00 0.00 31.08 4.16
458 546 5.486526 GGAGATGCTCATAGAAATAGGGTG 58.513 45.833 0.00 0.00 31.08 4.61
459 547 4.221703 CGGAGATGCTCATAGAAATAGGGT 59.778 45.833 0.00 0.00 31.08 4.34
460 548 4.464244 TCGGAGATGCTCATAGAAATAGGG 59.536 45.833 0.00 0.00 31.08 3.53
461 549 5.651387 TCGGAGATGCTCATAGAAATAGG 57.349 43.478 0.00 0.00 31.08 2.57
462 550 7.328249 GTCTTTCGGAGATGCTCATAGAAATAG 59.672 40.741 0.00 0.00 36.61 1.73
463 551 7.014711 AGTCTTTCGGAGATGCTCATAGAAATA 59.985 37.037 0.00 0.00 36.61 1.40
464 552 5.988561 GTCTTTCGGAGATGCTCATAGAAAT 59.011 40.000 0.00 0.00 36.61 2.17
465 553 5.127845 AGTCTTTCGGAGATGCTCATAGAAA 59.872 40.000 0.00 0.00 36.61 2.52
466 554 4.646945 AGTCTTTCGGAGATGCTCATAGAA 59.353 41.667 0.00 0.00 36.61 2.10
467 555 4.037327 CAGTCTTTCGGAGATGCTCATAGA 59.963 45.833 0.00 0.00 36.61 1.98
468 556 4.037327 TCAGTCTTTCGGAGATGCTCATAG 59.963 45.833 0.00 0.00 36.61 2.23
469 557 3.954258 TCAGTCTTTCGGAGATGCTCATA 59.046 43.478 0.00 0.00 36.61 2.15
470 558 2.762887 TCAGTCTTTCGGAGATGCTCAT 59.237 45.455 0.00 0.00 36.61 2.90
471 559 2.165234 CTCAGTCTTTCGGAGATGCTCA 59.835 50.000 0.00 0.00 40.01 4.26
472 560 2.481104 CCTCAGTCTTTCGGAGATGCTC 60.481 54.545 0.00 0.00 40.01 4.26
473 561 1.480137 CCTCAGTCTTTCGGAGATGCT 59.520 52.381 0.00 0.00 40.01 3.79
474 562 1.472376 CCCTCAGTCTTTCGGAGATGC 60.472 57.143 0.00 0.00 40.01 3.91
475 563 1.137872 CCCCTCAGTCTTTCGGAGATG 59.862 57.143 0.00 0.00 40.01 2.90
476 564 1.490574 CCCCTCAGTCTTTCGGAGAT 58.509 55.000 0.00 0.00 40.01 2.75
477 565 0.614979 CCCCCTCAGTCTTTCGGAGA 60.615 60.000 0.00 0.00 40.01 3.71
478 566 0.905337 ACCCCCTCAGTCTTTCGGAG 60.905 60.000 0.00 0.00 37.94 4.63
479 567 1.157751 ACCCCCTCAGTCTTTCGGA 59.842 57.895 0.00 0.00 0.00 4.55
480 568 1.296715 CACCCCCTCAGTCTTTCGG 59.703 63.158 0.00 0.00 0.00 4.30
481 569 0.396811 AACACCCCCTCAGTCTTTCG 59.603 55.000 0.00 0.00 0.00 3.46
482 570 2.230660 CAAACACCCCCTCAGTCTTTC 58.769 52.381 0.00 0.00 0.00 2.62
483 571 1.754201 GCAAACACCCCCTCAGTCTTT 60.754 52.381 0.00 0.00 0.00 2.52
484 572 0.178990 GCAAACACCCCCTCAGTCTT 60.179 55.000 0.00 0.00 0.00 3.01
485 573 1.062488 AGCAAACACCCCCTCAGTCT 61.062 55.000 0.00 0.00 0.00 3.24
486 574 0.178990 AAGCAAACACCCCCTCAGTC 60.179 55.000 0.00 0.00 0.00 3.51
487 575 0.468029 CAAGCAAACACCCCCTCAGT 60.468 55.000 0.00 0.00 0.00 3.41
488 576 1.809567 GCAAGCAAACACCCCCTCAG 61.810 60.000 0.00 0.00 0.00 3.35
489 577 1.832167 GCAAGCAAACACCCCCTCA 60.832 57.895 0.00 0.00 0.00 3.86
490 578 1.398958 TTGCAAGCAAACACCCCCTC 61.399 55.000 4.79 0.00 32.44 4.30
491 579 1.382420 TTGCAAGCAAACACCCCCT 60.382 52.632 4.79 0.00 32.44 4.79
492 580 1.069596 CTTGCAAGCAAACACCCCC 59.930 57.895 14.65 0.00 35.33 5.40
493 581 0.032540 CTCTTGCAAGCAAACACCCC 59.967 55.000 21.99 0.00 35.33 4.95
494 582 1.032014 TCTCTTGCAAGCAAACACCC 58.968 50.000 21.99 0.00 35.33 4.61
495 583 1.678101 AGTCTCTTGCAAGCAAACACC 59.322 47.619 21.99 4.99 35.33 4.16
496 584 3.809832 TCTAGTCTCTTGCAAGCAAACAC 59.190 43.478 21.99 12.17 35.33 3.32
497 585 3.809832 GTCTAGTCTCTTGCAAGCAAACA 59.190 43.478 21.99 2.95 35.33 2.83
498 586 4.061596 AGTCTAGTCTCTTGCAAGCAAAC 58.938 43.478 21.99 17.38 35.33 2.93
499 587 4.342862 AGTCTAGTCTCTTGCAAGCAAA 57.657 40.909 21.99 6.37 35.33 3.68
500 588 4.342862 AAGTCTAGTCTCTTGCAAGCAA 57.657 40.909 21.99 8.98 0.00 3.91
501 589 4.342862 AAAGTCTAGTCTCTTGCAAGCA 57.657 40.909 21.99 7.71 0.00 3.91
502 590 4.994217 AGAAAAGTCTAGTCTCTTGCAAGC 59.006 41.667 21.99 8.01 29.93 4.01
503 591 7.810766 CTAGAAAAGTCTAGTCTCTTGCAAG 57.189 40.000 20.81 20.81 45.81 4.01
515 603 3.375299 GTCGCCGGTACTAGAAAAGTCTA 59.625 47.826 1.90 0.00 39.80 2.59
516 604 2.163211 GTCGCCGGTACTAGAAAAGTCT 59.837 50.000 1.90 0.00 39.80 3.24
517 605 2.163211 AGTCGCCGGTACTAGAAAAGTC 59.837 50.000 1.90 0.00 39.80 3.01
518 606 2.165998 AGTCGCCGGTACTAGAAAAGT 58.834 47.619 1.90 0.00 42.62 2.66
519 607 2.935481 AGTCGCCGGTACTAGAAAAG 57.065 50.000 1.90 0.00 0.00 2.27
520 608 4.458989 TCTTTAGTCGCCGGTACTAGAAAA 59.541 41.667 15.51 10.37 31.37 2.29
521 609 4.009675 TCTTTAGTCGCCGGTACTAGAAA 58.990 43.478 15.51 10.89 31.37 2.52
522 610 3.609853 TCTTTAGTCGCCGGTACTAGAA 58.390 45.455 15.51 12.52 31.37 2.10
523 611 3.266510 TCTTTAGTCGCCGGTACTAGA 57.733 47.619 15.51 11.91 31.37 2.43
524 612 4.361451 TTTCTTTAGTCGCCGGTACTAG 57.639 45.455 15.51 9.58 31.37 2.57
525 613 4.782019 TTTTCTTTAGTCGCCGGTACTA 57.218 40.909 13.00 13.00 0.00 1.82
526 614 3.665745 TTTTCTTTAGTCGCCGGTACT 57.334 42.857 14.78 14.78 0.00 2.73
546 634 8.768501 AGAAAAAGAATCTACTGGAGGTTTTT 57.231 30.769 0.00 0.00 32.04 1.94
547 635 9.508642 CTAGAAAAAGAATCTACTGGAGGTTTT 57.491 33.333 0.00 0.00 0.00 2.43
548 636 8.661345 ACTAGAAAAAGAATCTACTGGAGGTTT 58.339 33.333 0.00 0.00 0.00 3.27
549 637 8.208575 ACTAGAAAAAGAATCTACTGGAGGTT 57.791 34.615 0.00 0.00 0.00 3.50
550 638 7.093245 GGACTAGAAAAAGAATCTACTGGAGGT 60.093 40.741 0.00 0.00 0.00 3.85
551 639 7.269316 GGACTAGAAAAAGAATCTACTGGAGG 58.731 42.308 0.00 0.00 0.00 4.30
552 640 7.125053 AGGGACTAGAAAAAGAATCTACTGGAG 59.875 40.741 0.00 0.00 36.02 3.86
553 641 6.960542 AGGGACTAGAAAAAGAATCTACTGGA 59.039 38.462 0.00 0.00 36.02 3.86
554 642 7.189079 AGGGACTAGAAAAAGAATCTACTGG 57.811 40.000 0.00 0.00 36.02 4.00
555 643 9.508642 AAAAGGGACTAGAAAAAGAATCTACTG 57.491 33.333 0.00 0.00 38.49 2.74
558 646 9.516546 GGAAAAAGGGACTAGAAAAAGAATCTA 57.483 33.333 0.00 0.00 38.49 1.98
559 647 7.451877 GGGAAAAAGGGACTAGAAAAAGAATCT 59.548 37.037 0.00 0.00 38.49 2.40
560 648 7.575155 CGGGAAAAAGGGACTAGAAAAAGAATC 60.575 40.741 0.00 0.00 38.49 2.52
561 649 6.208797 CGGGAAAAAGGGACTAGAAAAAGAAT 59.791 38.462 0.00 0.00 38.49 2.40
562 650 5.533528 CGGGAAAAAGGGACTAGAAAAAGAA 59.466 40.000 0.00 0.00 38.49 2.52
563 651 5.067954 CGGGAAAAAGGGACTAGAAAAAGA 58.932 41.667 0.00 0.00 38.49 2.52
564 652 4.825634 ACGGGAAAAAGGGACTAGAAAAAG 59.174 41.667 0.00 0.00 38.49 2.27
565 653 4.795469 ACGGGAAAAAGGGACTAGAAAAA 58.205 39.130 0.00 0.00 38.49 1.94
566 654 4.442401 ACGGGAAAAAGGGACTAGAAAA 57.558 40.909 0.00 0.00 38.49 2.29
567 655 4.442401 AACGGGAAAAAGGGACTAGAAA 57.558 40.909 0.00 0.00 38.49 2.52
568 656 4.139038 CAAACGGGAAAAAGGGACTAGAA 58.861 43.478 0.00 0.00 38.49 2.10
569 657 3.497227 CCAAACGGGAAAAAGGGACTAGA 60.497 47.826 0.00 0.00 36.47 2.43
570 658 2.817844 CCAAACGGGAAAAAGGGACTAG 59.182 50.000 0.00 0.00 36.47 2.57
571 659 2.175284 ACCAAACGGGAAAAAGGGACTA 59.825 45.455 0.00 0.00 37.84 2.59
572 660 1.063492 ACCAAACGGGAAAAAGGGACT 60.063 47.619 0.00 0.00 40.38 3.85
573 661 1.405872 ACCAAACGGGAAAAAGGGAC 58.594 50.000 0.00 0.00 41.15 4.46
574 662 2.162264 AACCAAACGGGAAAAAGGGA 57.838 45.000 0.00 0.00 41.15 4.20
575 663 2.694109 TGTAACCAAACGGGAAAAAGGG 59.306 45.455 0.00 0.00 41.15 3.95
576 664 4.594123 ATGTAACCAAACGGGAAAAAGG 57.406 40.909 0.00 0.00 41.15 3.11
577 665 9.131416 GTATTTATGTAACCAAACGGGAAAAAG 57.869 33.333 0.00 0.00 41.15 2.27
578 666 8.858094 AGTATTTATGTAACCAAACGGGAAAAA 58.142 29.630 0.00 0.00 41.15 1.94
579 667 8.406730 AGTATTTATGTAACCAAACGGGAAAA 57.593 30.769 0.00 0.00 41.15 2.29
580 668 7.999450 AGTATTTATGTAACCAAACGGGAAA 57.001 32.000 0.00 0.00 41.15 3.13
581 669 9.512588 TTTAGTATTTATGTAACCAAACGGGAA 57.487 29.630 0.00 0.00 41.15 3.97
582 670 9.512588 TTTTAGTATTTATGTAACCAAACGGGA 57.487 29.630 0.00 0.00 41.15 5.14
583 671 9.777575 CTTTTAGTATTTATGTAACCAAACGGG 57.222 33.333 0.00 0.00 44.81 5.28
616 704 6.403866 TGGTTACACGGACTAGACTAAAAA 57.596 37.500 0.00 0.00 0.00 1.94
617 705 6.403866 TTGGTTACACGGACTAGACTAAAA 57.596 37.500 0.00 0.00 0.00 1.52
618 706 6.183360 TGTTTGGTTACACGGACTAGACTAAA 60.183 38.462 0.00 0.00 0.00 1.85
619 707 5.301551 TGTTTGGTTACACGGACTAGACTAA 59.698 40.000 0.00 0.00 0.00 2.24
620 708 4.826733 TGTTTGGTTACACGGACTAGACTA 59.173 41.667 0.00 0.00 0.00 2.59
621 709 3.638160 TGTTTGGTTACACGGACTAGACT 59.362 43.478 0.00 0.00 0.00 3.24
622 710 3.737774 GTGTTTGGTTACACGGACTAGAC 59.262 47.826 0.00 0.00 39.05 2.59
623 711 3.981211 GTGTTTGGTTACACGGACTAGA 58.019 45.455 0.00 0.00 39.05 2.43
631 719 1.133730 TCAGGGGGTGTTTGGTTACAC 60.134 52.381 0.00 0.00 45.99 2.90
632 720 1.144093 CTCAGGGGGTGTTTGGTTACA 59.856 52.381 0.00 0.00 0.00 2.41
633 721 1.905637 CTCAGGGGGTGTTTGGTTAC 58.094 55.000 0.00 0.00 0.00 2.50
634 722 0.111639 GCTCAGGGGGTGTTTGGTTA 59.888 55.000 0.00 0.00 0.00 2.85
635 723 1.152546 GCTCAGGGGGTGTTTGGTT 60.153 57.895 0.00 0.00 0.00 3.67
636 724 2.520968 GCTCAGGGGGTGTTTGGT 59.479 61.111 0.00 0.00 0.00 3.67
637 725 2.283173 GGCTCAGGGGGTGTTTGG 60.283 66.667 0.00 0.00 0.00 3.28
638 726 1.077265 ATGGCTCAGGGGGTGTTTG 59.923 57.895 0.00 0.00 0.00 2.93
639 727 1.077265 CATGGCTCAGGGGGTGTTT 59.923 57.895 0.00 0.00 0.00 2.83
640 728 2.765969 CATGGCTCAGGGGGTGTT 59.234 61.111 0.00 0.00 0.00 3.32
641 729 4.052518 GCATGGCTCAGGGGGTGT 62.053 66.667 0.00 0.00 0.00 4.16
642 730 3.369410 ATGCATGGCTCAGGGGGTG 62.369 63.158 0.00 0.00 0.00 4.61
643 731 3.025599 ATGCATGGCTCAGGGGGT 61.026 61.111 0.00 0.00 0.00 4.95
644 732 2.203451 GATGCATGGCTCAGGGGG 60.203 66.667 2.46 0.00 0.00 5.40
645 733 2.593725 CGATGCATGGCTCAGGGG 60.594 66.667 2.46 0.00 0.00 4.79
646 734 1.890979 GACGATGCATGGCTCAGGG 60.891 63.158 2.46 0.00 0.00 4.45
647 735 2.242572 CGACGATGCATGGCTCAGG 61.243 63.158 2.46 0.00 0.00 3.86
648 736 2.242572 CCGACGATGCATGGCTCAG 61.243 63.158 2.46 0.00 0.00 3.35
649 737 2.202919 CCGACGATGCATGGCTCA 60.203 61.111 2.46 0.00 0.00 4.26
650 738 1.089481 TTTCCGACGATGCATGGCTC 61.089 55.000 2.46 2.59 0.00 4.70
651 739 0.464373 ATTTCCGACGATGCATGGCT 60.464 50.000 2.46 0.00 0.00 4.75
652 740 0.381801 AATTTCCGACGATGCATGGC 59.618 50.000 2.46 0.00 0.00 4.40
653 741 2.849880 AAATTTCCGACGATGCATGG 57.150 45.000 2.46 5.24 0.00 3.66
654 742 3.757184 TCAAAATTTCCGACGATGCATG 58.243 40.909 2.46 0.00 0.00 4.06
655 743 4.433186 TTCAAAATTTCCGACGATGCAT 57.567 36.364 0.00 0.00 0.00 3.96
656 744 3.906014 TTCAAAATTTCCGACGATGCA 57.094 38.095 0.00 0.00 0.00 3.96
657 745 6.862944 TTATTTCAAAATTTCCGACGATGC 57.137 33.333 0.00 0.00 0.00 3.91
658 746 9.289303 AGATTTATTTCAAAATTTCCGACGATG 57.711 29.630 0.00 0.00 0.00 3.84
660 748 9.982291 CTAGATTTATTTCAAAATTTCCGACGA 57.018 29.630 0.00 0.00 0.00 4.20
661 749 9.982291 TCTAGATTTATTTCAAAATTTCCGACG 57.018 29.630 0.00 0.00 0.00 5.12
683 771 8.200792 AGTCCTAGTGCTCACATTTATTTCTAG 58.799 37.037 2.63 0.00 0.00 2.43
684 772 8.079211 AGTCCTAGTGCTCACATTTATTTCTA 57.921 34.615 2.63 0.00 0.00 2.10
688 776 8.322091 AGTTAAGTCCTAGTGCTCACATTTATT 58.678 33.333 2.63 0.00 0.00 1.40
691 779 6.014156 AGAGTTAAGTCCTAGTGCTCACATTT 60.014 38.462 6.68 0.00 0.00 2.32
692 780 5.482175 AGAGTTAAGTCCTAGTGCTCACATT 59.518 40.000 6.68 0.00 0.00 2.71
695 783 5.648960 ACTAGAGTTAAGTCCTAGTGCTCAC 59.351 44.000 15.69 0.00 40.89 3.51
703 791 4.279145 CAGCCCACTAGAGTTAAGTCCTA 58.721 47.826 6.68 0.00 0.00 2.94
704 792 3.100671 CAGCCCACTAGAGTTAAGTCCT 58.899 50.000 6.68 0.00 0.00 3.85
705 793 2.168728 CCAGCCCACTAGAGTTAAGTCC 59.831 54.545 6.68 0.00 0.00 3.85
707 795 3.100671 CTCCAGCCCACTAGAGTTAAGT 58.899 50.000 0.00 0.00 28.14 2.24
708 796 3.366396 TCTCCAGCCCACTAGAGTTAAG 58.634 50.000 0.00 0.00 33.79 1.85
709 797 3.468071 TCTCCAGCCCACTAGAGTTAA 57.532 47.619 0.00 0.00 33.79 2.01
710 798 3.689872 ATCTCCAGCCCACTAGAGTTA 57.310 47.619 0.00 0.00 33.79 2.24
711 799 2.559381 ATCTCCAGCCCACTAGAGTT 57.441 50.000 0.00 0.00 33.79 3.01
713 801 3.509575 GTGATATCTCCAGCCCACTAGAG 59.490 52.174 3.98 0.00 33.40 2.43
714 802 3.117131 TGTGATATCTCCAGCCCACTAGA 60.117 47.826 3.98 0.00 0.00 2.43
715 803 3.234353 TGTGATATCTCCAGCCCACTAG 58.766 50.000 3.98 0.00 0.00 2.57
716 804 3.234353 CTGTGATATCTCCAGCCCACTA 58.766 50.000 3.98 0.00 0.00 2.74
717 805 2.045524 CTGTGATATCTCCAGCCCACT 58.954 52.381 3.98 0.00 0.00 4.00
718 806 1.765314 ACTGTGATATCTCCAGCCCAC 59.235 52.381 17.60 2.45 0.00 4.61
719 807 2.042464 GACTGTGATATCTCCAGCCCA 58.958 52.381 17.60 0.00 0.00 5.36
720 808 1.346068 GGACTGTGATATCTCCAGCCC 59.654 57.143 17.60 14.25 0.00 5.19
721 809 1.346068 GGGACTGTGATATCTCCAGCC 59.654 57.143 17.60 17.64 0.00 4.85
722 810 2.298729 GAGGGACTGTGATATCTCCAGC 59.701 54.545 17.60 12.34 41.55 4.85
723 811 3.843422 AGAGGGACTGTGATATCTCCAG 58.157 50.000 16.62 16.62 41.55 3.86
724 812 3.981516 AGAGGGACTGTGATATCTCCA 57.018 47.619 10.10 3.92 41.55 3.86
725 813 4.525100 GGTTAGAGGGACTGTGATATCTCC 59.475 50.000 3.98 2.28 41.55 3.71
726 814 4.216687 CGGTTAGAGGGACTGTGATATCTC 59.783 50.000 3.98 0.63 41.55 2.75
727 815 4.145807 CGGTTAGAGGGACTGTGATATCT 58.854 47.826 3.98 0.00 41.55 1.98
728 816 3.890147 ACGGTTAGAGGGACTGTGATATC 59.110 47.826 0.00 0.00 41.55 1.63
729 817 3.890147 GACGGTTAGAGGGACTGTGATAT 59.110 47.826 0.00 0.00 41.55 1.63
730 818 3.285484 GACGGTTAGAGGGACTGTGATA 58.715 50.000 0.00 0.00 41.55 2.15
731 819 2.100989 GACGGTTAGAGGGACTGTGAT 58.899 52.381 0.00 0.00 41.55 3.06
732 820 1.542492 GACGGTTAGAGGGACTGTGA 58.458 55.000 0.00 0.00 41.55 3.58
733 821 0.531200 GGACGGTTAGAGGGACTGTG 59.469 60.000 0.00 0.00 41.55 3.66
734 822 0.113776 TGGACGGTTAGAGGGACTGT 59.886 55.000 0.00 0.00 41.55 3.55
735 823 0.818296 CTGGACGGTTAGAGGGACTG 59.182 60.000 0.00 0.00 41.55 3.51
737 825 1.516423 GCTGGACGGTTAGAGGGAC 59.484 63.158 0.00 0.00 0.00 4.46
738 826 1.684734 GGCTGGACGGTTAGAGGGA 60.685 63.158 0.00 0.00 0.00 4.20
739 827 1.961180 CTGGCTGGACGGTTAGAGGG 61.961 65.000 0.00 0.00 0.00 4.30
740 828 1.517832 CTGGCTGGACGGTTAGAGG 59.482 63.158 0.00 0.00 0.00 3.69
741 829 1.258445 ACCTGGCTGGACGGTTAGAG 61.258 60.000 18.12 0.00 39.71 2.43
742 830 0.834687 AACCTGGCTGGACGGTTAGA 60.835 55.000 18.12 0.00 39.14 2.10
743 831 0.673644 CAACCTGGCTGGACGGTTAG 60.674 60.000 18.12 0.00 38.90 2.34
744 832 1.373435 CAACCTGGCTGGACGGTTA 59.627 57.895 18.12 0.00 38.90 2.85
745 833 2.113139 CAACCTGGCTGGACGGTT 59.887 61.111 18.12 3.87 41.47 4.44
746 834 3.953775 CCAACCTGGCTGGACGGT 61.954 66.667 18.12 0.00 39.71 4.83
747 835 3.953775 ACCAACCTGGCTGGACGG 61.954 66.667 22.54 17.40 42.67 4.79
748 836 2.669569 CACCAACCTGGCTGGACG 60.670 66.667 22.54 9.22 42.67 4.79
749 837 2.985847 GCACCAACCTGGCTGGAC 60.986 66.667 22.54 10.20 42.67 4.02
750 838 4.641645 CGCACCAACCTGGCTGGA 62.642 66.667 22.54 0.00 42.67 3.86
753 841 4.666253 ATGCGCACCAACCTGGCT 62.666 61.111 14.90 0.00 42.67 4.75
754 842 4.424566 CATGCGCACCAACCTGGC 62.425 66.667 14.90 0.00 42.67 4.85
755 843 3.751246 CCATGCGCACCAACCTGG 61.751 66.667 14.90 12.40 45.02 4.45
756 844 2.672651 TCCATGCGCACCAACCTG 60.673 61.111 14.90 5.69 0.00 4.00
757 845 2.360350 CTCCATGCGCACCAACCT 60.360 61.111 14.90 0.00 0.00 3.50
758 846 2.359850 TCTCCATGCGCACCAACC 60.360 61.111 14.90 0.00 0.00 3.77
759 847 0.745845 ATCTCTCCATGCGCACCAAC 60.746 55.000 14.90 0.00 0.00 3.77
760 848 0.745486 CATCTCTCCATGCGCACCAA 60.745 55.000 14.90 0.00 0.00 3.67
761 849 1.153309 CATCTCTCCATGCGCACCA 60.153 57.895 14.90 0.00 0.00 4.17
762 850 0.745845 AACATCTCTCCATGCGCACC 60.746 55.000 14.90 0.00 0.00 5.01
763 851 1.089920 AAACATCTCTCCATGCGCAC 58.910 50.000 14.90 0.00 0.00 5.34
764 852 1.825090 AAAACATCTCTCCATGCGCA 58.175 45.000 14.96 14.96 0.00 6.09
765 853 2.162208 TCAAAAACATCTCTCCATGCGC 59.838 45.455 0.00 0.00 0.00 6.09
766 854 3.686241 TCTCAAAAACATCTCTCCATGCG 59.314 43.478 0.00 0.00 0.00 4.73
767 855 5.831702 ATCTCAAAAACATCTCTCCATGC 57.168 39.130 0.00 0.00 0.00 4.06
797 885 6.410914 CCATGTTCTCGTGTAAAAATAATCGC 59.589 38.462 0.00 0.00 0.00 4.58
823 911 3.956744 AGGGAAATGCTTTCTGACTACC 58.043 45.455 8.05 0.00 39.59 3.18
1353 1441 0.602905 AAACCGCGTCCCAGAAGAAG 60.603 55.000 4.92 0.00 0.00 2.85
1683 1771 1.886886 TCGCTGAGTTAACCCCAAAC 58.113 50.000 0.88 0.00 0.00 2.93
1897 1986 1.659335 CAGCTTTTGGCAGCACACG 60.659 57.895 0.00 0.00 42.84 4.49
1983 2073 7.631007 TGACTACTAAGTGATCTGACCTAAGA 58.369 38.462 0.00 0.00 35.56 2.10
1984 2074 7.468084 GCTGACTACTAAGTGATCTGACCTAAG 60.468 44.444 0.00 0.00 35.56 2.18
2106 2197 2.095567 CCACAAAGAAAGAGATGCCGTG 60.096 50.000 0.00 0.00 0.00 4.94
2215 2306 2.097142 GTCACAGCTGCAGAATCCAATC 59.903 50.000 20.43 0.00 0.00 2.67
2242 2333 5.874810 GCTATACAAGTCACAACCATCAAGA 59.125 40.000 0.00 0.00 0.00 3.02
2253 2344 7.227512 AGGCATCAATAAAGCTATACAAGTCAC 59.772 37.037 0.00 0.00 0.00 3.67
2397 2494 1.133637 TCGGCAGCTTCTCTAGGAGAT 60.134 52.381 0.00 0.00 38.56 2.75
2476 2573 1.978455 AAGTGTGGAGTGCGGGTGAA 61.978 55.000 0.00 0.00 0.00 3.18
2548 2645 2.354403 CCCGTCTACAGGGTGGTAAAAG 60.354 54.545 0.00 0.00 43.89 2.27
2634 2731 8.922931 TGGACATATAATCACATGCTAACAAT 57.077 30.769 0.00 0.00 0.00 2.71
2774 2871 6.712095 TGCCTAGCATCATTCTAAATAACCAG 59.288 38.462 0.00 0.00 31.71 4.00
2880 2980 8.023128 ACATAATTCCTGACATTTTTCACGAAG 58.977 33.333 0.00 0.00 28.25 3.79
2882 2982 7.361713 GGACATAATTCCTGACATTTTTCACGA 60.362 37.037 0.00 0.00 32.24 4.35
2883 2983 6.747280 GGACATAATTCCTGACATTTTTCACG 59.253 38.462 0.00 0.00 32.24 4.35
2906 3010 5.848286 AATGGGTAGATAAGATGCATGGA 57.152 39.130 2.46 0.00 0.00 3.41
2915 3019 7.715249 TGTAAGCAGCTTTAATGGGTAGATAAG 59.285 37.037 14.29 0.00 0.00 1.73
3135 3239 8.267620 TCTCCTATGAAATTACCATGTGAGAT 57.732 34.615 13.70 0.00 32.31 2.75
3192 3296 1.909302 TGGAAAGAAGCCCTAGTGGAG 59.091 52.381 1.75 0.00 35.39 3.86
3297 3402 4.203828 CGCATAGCAATTTGTTAGCGTAG 58.796 43.478 18.99 3.71 39.18 3.51
3301 3406 3.312421 TCTCCGCATAGCAATTTGTTAGC 59.688 43.478 0.00 2.40 0.00 3.09
3317 3422 2.286536 TAAACAAGTTTTGCGTCTCCGC 60.287 45.455 3.25 0.00 45.41 5.54
3322 3427 6.757162 ACACAAAATAAACAAGTTTTGCGTC 58.243 32.000 3.25 0.00 44.86 5.19
3324 3429 7.791590 CCATACACAAAATAAACAAGTTTTGCG 59.208 33.333 3.25 4.36 44.86 4.85
3325 3430 7.585936 GCCATACACAAAATAAACAAGTTTTGC 59.414 33.333 3.25 0.00 44.86 3.68
3344 3449 1.311651 CCACACCAATGCGCCATACA 61.312 55.000 4.18 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.