Multiple sequence alignment - TraesCS2B01G286800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G286800 chr2B 100.000 5844 0 0 1 5844 395551197 395545354 0.000000e+00 10792.0
1 TraesCS2B01G286800 chr2B 85.175 371 52 3 98 468 336918044 336918411 1.540000e-100 377.0
2 TraesCS2B01G286800 chr2D 96.606 3123 79 18 469 3576 326226450 326223340 0.000000e+00 5155.0
3 TraesCS2B01G286800 chr2D 95.833 2280 70 11 3573 5844 326223293 326221031 0.000000e+00 3661.0
4 TraesCS2B01G286800 chr2A 97.854 2610 32 14 874 3468 391862760 391865360 0.000000e+00 4488.0
5 TraesCS2B01G286800 chr2A 97.001 1267 28 7 3572 4834 391867447 391868707 0.000000e+00 2121.0
6 TraesCS2B01G286800 chr2A 97.152 948 16 3 4904 5844 391868994 391869937 0.000000e+00 1591.0
7 TraesCS2B01G286800 chr2A 86.441 413 41 10 466 873 391860874 391861276 6.950000e-119 438.0
8 TraesCS2B01G286800 chr2A 99.091 110 1 0 3464 3573 391867289 391867398 1.280000e-46 198.0
9 TraesCS2B01G286800 chr7B 88.936 470 52 0 1 470 119735003 119734534 1.090000e-161 580.0
10 TraesCS2B01G286800 chr6A 83.376 391 52 10 101 487 595774146 595773765 3.350000e-92 350.0
11 TraesCS2B01G286800 chr6A 82.245 383 65 3 86 468 564664169 564663790 1.570000e-85 327.0
12 TraesCS2B01G286800 chr6B 88.889 63 6 1 13 74 19359969 19360031 6.280000e-10 76.8
13 TraesCS2B01G286800 chr1D 94.000 50 3 0 1 50 105949769 105949818 6.280000e-10 76.8
14 TraesCS2B01G286800 chrUn 95.556 45 2 0 13 57 291323123 291323167 8.120000e-09 73.1
15 TraesCS2B01G286800 chr3B 92.157 51 4 0 1 51 340820322 340820372 8.120000e-09 73.1
16 TraesCS2B01G286800 chr3B 92.500 40 3 0 16 55 686566785 686566746 2.270000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G286800 chr2B 395545354 395551197 5843 True 10792.0 10792 100.0000 1 5844 1 chr2B.!!$R1 5843
1 TraesCS2B01G286800 chr2D 326221031 326226450 5419 True 4408.0 5155 96.2195 469 5844 2 chr2D.!!$R1 5375
2 TraesCS2B01G286800 chr2A 391860874 391869937 9063 False 1767.2 4488 95.5078 466 5844 5 chr2A.!!$F1 5378

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
295 296 0.033504 TTTCTTCGGAGCTGCGAGTT 59.966 50.000 29.02 0.00 0.00 3.01 F
383 384 0.098905 TGCTCGAGAAGAACGGATCG 59.901 55.000 18.75 0.00 36.54 3.69 F
581 582 0.105224 TCTTGTACCACACCACACCG 59.895 55.000 0.00 0.00 0.00 4.94 F
918 2408 2.024176 TCAAGTCCAGCCCAGTAGAA 57.976 50.000 0.00 0.00 0.00 2.10 F
1535 3031 2.636830 CCTGTTCGATGAAATGCTCCT 58.363 47.619 0.00 0.00 0.00 3.69 F
2665 4166 0.738975 TGAGATTGAGGGAGCGTACG 59.261 55.000 11.84 11.84 0.00 3.67 F
3638 7133 2.345341 GTGCTGTTTTGTGTGCTTTGTC 59.655 45.455 0.00 0.00 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1698 3194 0.890996 CTTGGGCCAACCTCTCACAC 60.891 60.000 16.66 0.0 41.11 3.82 R
2234 3730 1.073603 TCATCACAACTGTGGCATCCA 59.926 47.619 9.87 0.0 45.65 3.41 R
2453 3949 5.760253 AGTGTCATCTCTTTGAATGTTTCGT 59.240 36.000 0.00 0.0 0.00 3.85 R
2454 3950 6.233430 AGTGTCATCTCTTTGAATGTTTCG 57.767 37.500 0.00 0.0 0.00 3.46 R
2960 4461 2.271800 CCACAGCTTCCGTAATCTGAC 58.728 52.381 0.00 0.0 33.86 3.51 R
4278 7774 0.664166 GACATTGCACCAAACCTGCG 60.664 55.000 0.00 0.0 37.46 5.18 R
4923 8638 0.250858 AGCAACTGCACAGCCATACA 60.251 50.000 4.22 0.0 45.16 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.099062 GGCGACGCTGCATTGAAG 59.901 61.111 20.77 0.00 36.28 3.02
33 34 2.575262 GCGACGCTGCATTGAAGC 60.575 61.111 13.73 6.56 37.31 3.86
38 39 3.168271 GCTGCATTGAAGCGTCGA 58.832 55.556 0.00 0.00 37.31 4.20
39 40 1.225854 GCTGCATTGAAGCGTCGAC 60.226 57.895 5.18 5.18 37.31 4.20
40 41 1.421485 CTGCATTGAAGCGTCGACC 59.579 57.895 10.58 2.76 37.31 4.79
41 42 1.291184 CTGCATTGAAGCGTCGACCA 61.291 55.000 10.58 0.00 37.31 4.02
42 43 0.673333 TGCATTGAAGCGTCGACCAT 60.673 50.000 10.58 0.00 37.31 3.55
43 44 0.247814 GCATTGAAGCGTCGACCATG 60.248 55.000 10.58 4.34 0.00 3.66
44 45 1.078709 CATTGAAGCGTCGACCATGT 58.921 50.000 10.58 0.00 0.00 3.21
45 46 1.464608 CATTGAAGCGTCGACCATGTT 59.535 47.619 10.58 0.00 0.00 2.71
46 47 0.865111 TTGAAGCGTCGACCATGTTG 59.135 50.000 10.58 0.00 0.00 3.33
47 48 0.249699 TGAAGCGTCGACCATGTTGT 60.250 50.000 10.58 0.00 0.00 3.32
48 49 0.163788 GAAGCGTCGACCATGTTGTG 59.836 55.000 10.58 0.00 0.00 3.33
56 57 4.424566 CCATGTTGTGGCTGGCGC 62.425 66.667 7.94 7.94 42.12 6.53
57 58 3.672447 CATGTTGTGGCTGGCGCA 61.672 61.111 13.83 13.83 38.10 6.09
58 59 2.911509 ATGTTGTGGCTGGCGCAA 60.912 55.556 23.87 23.87 38.10 4.85
59 60 3.211564 ATGTTGTGGCTGGCGCAAC 62.212 57.895 37.99 37.99 40.65 4.17
60 61 3.595758 GTTGTGGCTGGCGCAACT 61.596 61.111 37.58 0.00 40.88 3.16
61 62 3.286751 TTGTGGCTGGCGCAACTC 61.287 61.111 23.87 0.00 40.88 3.01
68 69 3.923864 TGGCGCAACTCCGACAGT 61.924 61.111 10.83 0.00 42.15 3.55
69 70 3.414700 GGCGCAACTCCGACAGTG 61.415 66.667 10.83 0.00 35.95 3.66
70 71 2.661866 GCGCAACTCCGACAGTGT 60.662 61.111 0.30 0.00 34.56 3.55
71 72 2.943345 GCGCAACTCCGACAGTGTG 61.943 63.158 0.30 0.00 34.56 3.82
72 73 1.591594 CGCAACTCCGACAGTGTGT 60.592 57.895 0.00 0.00 34.56 3.72
73 74 1.821241 CGCAACTCCGACAGTGTGTG 61.821 60.000 0.00 0.00 34.56 3.82
74 75 1.934463 CAACTCCGACAGTGTGTGC 59.066 57.895 0.00 0.00 34.56 4.57
75 76 1.591594 AACTCCGACAGTGTGTGCG 60.592 57.895 0.00 0.00 34.56 5.34
76 77 2.734723 CTCCGACAGTGTGTGCGG 60.735 66.667 14.13 14.13 40.14 5.69
77 78 4.961511 TCCGACAGTGTGTGCGGC 62.962 66.667 15.20 0.00 39.31 6.53
80 81 3.406361 GACAGTGTGTGCGGCGAG 61.406 66.667 12.98 0.00 0.00 5.03
81 82 4.969196 ACAGTGTGTGCGGCGAGG 62.969 66.667 12.98 0.00 0.00 4.63
111 112 3.869272 GGCGACGGAGCTGCATTG 61.869 66.667 5.91 0.00 37.29 2.82
112 113 3.869272 GCGACGGAGCTGCATTGG 61.869 66.667 5.91 0.00 0.00 3.16
113 114 2.125552 CGACGGAGCTGCATTGGA 60.126 61.111 5.91 0.00 0.00 3.53
114 115 2.169789 CGACGGAGCTGCATTGGAG 61.170 63.158 5.91 0.03 0.00 3.86
115 116 2.437359 ACGGAGCTGCATTGGAGC 60.437 61.111 21.19 21.19 36.65 4.70
116 117 2.437180 CGGAGCTGCATTGGAGCA 60.437 61.111 28.56 3.51 43.35 4.26
117 118 2.758089 CGGAGCTGCATTGGAGCAC 61.758 63.158 28.56 22.82 40.11 4.40
118 119 1.676635 GGAGCTGCATTGGAGCACA 60.677 57.895 28.56 0.00 40.11 4.57
119 120 1.035932 GGAGCTGCATTGGAGCACAT 61.036 55.000 28.56 11.15 40.11 3.21
120 121 0.100682 GAGCTGCATTGGAGCACATG 59.899 55.000 28.56 0.00 40.11 3.21
121 122 0.323087 AGCTGCATTGGAGCACATGA 60.323 50.000 28.56 0.00 40.11 3.07
122 123 0.744874 GCTGCATTGGAGCACATGAT 59.255 50.000 23.37 0.00 40.11 2.45
123 124 1.536072 GCTGCATTGGAGCACATGATG 60.536 52.381 23.37 0.00 40.11 3.07
134 135 1.908065 CACATGATGCTACGACGACA 58.092 50.000 0.00 0.00 0.00 4.35
135 136 2.463876 CACATGATGCTACGACGACAT 58.536 47.619 0.00 1.88 0.00 3.06
136 137 2.860136 CACATGATGCTACGACGACATT 59.140 45.455 0.00 0.00 0.00 2.71
137 138 2.860136 ACATGATGCTACGACGACATTG 59.140 45.455 0.00 1.71 0.00 2.82
138 139 1.277326 TGATGCTACGACGACATTGC 58.723 50.000 0.00 0.00 0.00 3.56
139 140 1.135112 TGATGCTACGACGACATTGCT 60.135 47.619 0.00 0.00 0.00 3.91
140 141 1.256376 GATGCTACGACGACATTGCTG 59.744 52.381 0.00 0.00 0.00 4.41
141 142 1.345176 GCTACGACGACATTGCTGC 59.655 57.895 0.00 0.00 0.00 5.25
142 143 1.999051 CTACGACGACATTGCTGCC 59.001 57.895 0.00 0.00 0.00 4.85
143 144 0.735978 CTACGACGACATTGCTGCCA 60.736 55.000 0.00 0.00 0.00 4.92
144 145 0.108377 TACGACGACATTGCTGCCAT 60.108 50.000 0.00 0.00 0.00 4.40
145 146 1.061411 CGACGACATTGCTGCCATG 59.939 57.895 11.72 11.72 0.00 3.66
146 147 1.430632 GACGACATTGCTGCCATGG 59.569 57.895 16.82 7.63 0.00 3.66
147 148 2.103538 CGACATTGCTGCCATGGC 59.896 61.111 30.54 30.54 42.35 4.40
148 149 2.103538 GACATTGCTGCCATGGCG 59.896 61.111 30.87 24.84 45.51 5.69
156 157 4.720902 TGCCATGGCGGACTGGTG 62.721 66.667 30.87 0.00 45.51 4.17
158 159 3.716195 CCATGGCGGACTGGTGGA 61.716 66.667 0.00 0.00 36.56 4.02
159 160 2.124983 CATGGCGGACTGGTGGAG 60.125 66.667 0.00 0.00 0.00 3.86
160 161 4.101448 ATGGCGGACTGGTGGAGC 62.101 66.667 0.00 0.00 0.00 4.70
162 163 4.767255 GGCGGACTGGTGGAGCTG 62.767 72.222 0.00 0.00 0.00 4.24
165 166 4.008933 GGACTGGTGGAGCTGCGT 62.009 66.667 0.00 0.00 0.00 5.24
166 167 2.031163 GACTGGTGGAGCTGCGTT 59.969 61.111 0.00 0.00 0.00 4.84
167 168 2.281070 ACTGGTGGAGCTGCGTTG 60.281 61.111 0.00 0.00 0.00 4.10
168 169 3.730761 CTGGTGGAGCTGCGTTGC 61.731 66.667 0.00 0.00 0.00 4.17
169 170 4.560743 TGGTGGAGCTGCGTTGCA 62.561 61.111 0.00 0.00 36.92 4.08
170 171 3.286751 GGTGGAGCTGCGTTGCAA 61.287 61.111 0.00 0.00 38.41 4.08
171 172 2.050985 GTGGAGCTGCGTTGCAAC 60.051 61.111 19.89 19.89 38.41 4.17
172 173 2.515757 TGGAGCTGCGTTGCAACA 60.516 55.556 28.01 9.88 38.41 3.33
173 174 2.253452 GGAGCTGCGTTGCAACAG 59.747 61.111 28.01 19.52 38.41 3.16
174 175 2.253452 GAGCTGCGTTGCAACAGG 59.747 61.111 28.01 17.40 38.41 4.00
175 176 2.203195 AGCTGCGTTGCAACAGGA 60.203 55.556 28.01 19.72 38.41 3.86
176 177 1.785041 GAGCTGCGTTGCAACAGGAA 61.785 55.000 28.01 7.65 38.41 3.36
177 178 1.370900 GCTGCGTTGCAACAGGAAG 60.371 57.895 28.01 17.50 38.41 3.46
178 179 1.785041 GCTGCGTTGCAACAGGAAGA 61.785 55.000 28.01 4.93 38.41 2.87
179 180 0.236711 CTGCGTTGCAACAGGAAGAG 59.763 55.000 28.01 11.68 38.41 2.85
180 181 1.165907 TGCGTTGCAACAGGAAGAGG 61.166 55.000 28.01 10.97 34.76 3.69
181 182 1.576421 CGTTGCAACAGGAAGAGGC 59.424 57.895 28.01 0.00 0.00 4.70
182 183 1.576421 GTTGCAACAGGAAGAGGCG 59.424 57.895 24.52 0.00 0.00 5.52
183 184 0.884704 GTTGCAACAGGAAGAGGCGA 60.885 55.000 24.52 0.00 0.00 5.54
184 185 0.884704 TTGCAACAGGAAGAGGCGAC 60.885 55.000 0.00 0.00 0.00 5.19
185 186 2.383527 GCAACAGGAAGAGGCGACG 61.384 63.158 0.00 0.00 0.00 5.12
186 187 1.289066 CAACAGGAAGAGGCGACGA 59.711 57.895 0.00 0.00 0.00 4.20
187 188 0.734253 CAACAGGAAGAGGCGACGAG 60.734 60.000 0.00 0.00 0.00 4.18
188 189 1.179814 AACAGGAAGAGGCGACGAGT 61.180 55.000 0.00 0.00 0.00 4.18
189 190 1.137825 CAGGAAGAGGCGACGAGTC 59.862 63.158 0.00 0.00 0.00 3.36
198 199 3.250323 CGACGAGTCGCTGCCATG 61.250 66.667 13.59 0.00 46.50 3.66
199 200 2.887568 GACGAGTCGCTGCCATGG 60.888 66.667 13.59 7.63 0.00 3.66
255 256 3.353600 TGGCGCAGTCATTGGTTG 58.646 55.556 10.83 0.00 36.97 3.77
256 257 1.528076 TGGCGCAGTCATTGGTTGT 60.528 52.632 10.83 0.00 36.97 3.32
257 258 1.106351 TGGCGCAGTCATTGGTTGTT 61.106 50.000 10.83 0.00 36.97 2.83
258 259 0.664166 GGCGCAGTCATTGGTTGTTG 60.664 55.000 10.83 0.00 0.00 3.33
259 260 0.664166 GCGCAGTCATTGGTTGTTGG 60.664 55.000 0.30 0.00 0.00 3.77
260 261 0.950836 CGCAGTCATTGGTTGTTGGA 59.049 50.000 0.00 0.00 0.00 3.53
261 262 1.336440 CGCAGTCATTGGTTGTTGGAA 59.664 47.619 0.00 0.00 0.00 3.53
262 263 2.605338 CGCAGTCATTGGTTGTTGGAAG 60.605 50.000 0.00 0.00 0.00 3.46
263 264 2.863704 GCAGTCATTGGTTGTTGGAAGC 60.864 50.000 0.00 0.00 0.00 3.86
264 265 2.624838 CAGTCATTGGTTGTTGGAAGCT 59.375 45.455 0.00 0.00 0.00 3.74
265 266 2.624838 AGTCATTGGTTGTTGGAAGCTG 59.375 45.455 0.00 0.00 0.00 4.24
266 267 2.622942 GTCATTGGTTGTTGGAAGCTGA 59.377 45.455 0.00 0.00 0.00 4.26
267 268 3.256631 GTCATTGGTTGTTGGAAGCTGAT 59.743 43.478 0.00 0.00 0.00 2.90
268 269 3.256383 TCATTGGTTGTTGGAAGCTGATG 59.744 43.478 0.00 0.00 0.00 3.07
269 270 2.363306 TGGTTGTTGGAAGCTGATGT 57.637 45.000 0.00 0.00 0.00 3.06
270 271 1.955778 TGGTTGTTGGAAGCTGATGTG 59.044 47.619 0.00 0.00 0.00 3.21
271 272 1.956477 GGTTGTTGGAAGCTGATGTGT 59.044 47.619 0.00 0.00 0.00 3.72
272 273 3.146066 GGTTGTTGGAAGCTGATGTGTA 58.854 45.455 0.00 0.00 0.00 2.90
273 274 3.568007 GGTTGTTGGAAGCTGATGTGTAA 59.432 43.478 0.00 0.00 0.00 2.41
274 275 4.320494 GGTTGTTGGAAGCTGATGTGTAAG 60.320 45.833 0.00 0.00 0.00 2.34
275 276 3.411446 TGTTGGAAGCTGATGTGTAAGG 58.589 45.455 0.00 0.00 0.00 2.69
276 277 3.181445 TGTTGGAAGCTGATGTGTAAGGT 60.181 43.478 0.00 0.00 0.00 3.50
277 278 3.788227 TGGAAGCTGATGTGTAAGGTT 57.212 42.857 0.00 0.00 36.86 3.50
278 279 4.098914 TGGAAGCTGATGTGTAAGGTTT 57.901 40.909 0.00 0.00 34.43 3.27
279 280 4.072131 TGGAAGCTGATGTGTAAGGTTTC 58.928 43.478 0.00 0.00 34.43 2.78
280 281 4.202461 TGGAAGCTGATGTGTAAGGTTTCT 60.202 41.667 0.00 0.00 34.43 2.52
281 282 4.762251 GGAAGCTGATGTGTAAGGTTTCTT 59.238 41.667 0.00 0.00 34.43 2.52
282 283 5.106515 GGAAGCTGATGTGTAAGGTTTCTTC 60.107 44.000 0.00 0.00 34.43 2.87
283 284 3.997021 AGCTGATGTGTAAGGTTTCTTCG 59.003 43.478 0.00 0.00 34.59 3.79
284 285 3.125316 GCTGATGTGTAAGGTTTCTTCGG 59.875 47.826 0.00 0.00 34.59 4.30
285 286 4.566004 CTGATGTGTAAGGTTTCTTCGGA 58.434 43.478 0.00 0.00 34.59 4.55
286 287 4.566004 TGATGTGTAAGGTTTCTTCGGAG 58.434 43.478 0.00 0.00 34.59 4.63
287 288 2.762745 TGTGTAAGGTTTCTTCGGAGC 58.237 47.619 0.00 0.00 34.59 4.70
288 289 2.367567 TGTGTAAGGTTTCTTCGGAGCT 59.632 45.455 0.00 0.00 34.59 4.09
289 290 2.737252 GTGTAAGGTTTCTTCGGAGCTG 59.263 50.000 0.00 0.00 34.59 4.24
290 291 1.732809 GTAAGGTTTCTTCGGAGCTGC 59.267 52.381 0.00 0.00 34.59 5.25
291 292 0.951040 AAGGTTTCTTCGGAGCTGCG 60.951 55.000 22.84 22.84 0.00 5.18
292 293 1.374252 GGTTTCTTCGGAGCTGCGA 60.374 57.895 27.32 27.32 0.00 5.10
293 294 1.355066 GGTTTCTTCGGAGCTGCGAG 61.355 60.000 29.02 22.08 0.00 5.03
294 295 0.667792 GTTTCTTCGGAGCTGCGAGT 60.668 55.000 29.02 0.00 0.00 4.18
295 296 0.033504 TTTCTTCGGAGCTGCGAGTT 59.966 50.000 29.02 0.00 0.00 3.01
296 297 0.667487 TTCTTCGGAGCTGCGAGTTG 60.667 55.000 29.02 21.91 0.00 3.16
297 298 1.080501 CTTCGGAGCTGCGAGTTGA 60.081 57.895 29.02 14.61 0.00 3.18
298 299 0.459237 CTTCGGAGCTGCGAGTTGAT 60.459 55.000 29.02 0.00 0.00 2.57
299 300 0.737367 TTCGGAGCTGCGAGTTGATG 60.737 55.000 29.02 0.00 0.00 3.07
300 301 1.446792 CGGAGCTGCGAGTTGATGT 60.447 57.895 24.56 0.00 0.00 3.06
301 302 1.016130 CGGAGCTGCGAGTTGATGTT 61.016 55.000 24.56 0.00 0.00 2.71
302 303 0.445436 GGAGCTGCGAGTTGATGTTG 59.555 55.000 0.00 0.00 0.00 3.33
303 304 0.179205 GAGCTGCGAGTTGATGTTGC 60.179 55.000 0.00 0.00 0.00 4.17
304 305 1.154150 GCTGCGAGTTGATGTTGCC 60.154 57.895 0.00 0.00 0.00 4.52
305 306 1.855213 GCTGCGAGTTGATGTTGCCA 61.855 55.000 0.00 0.00 0.00 4.92
306 307 0.806868 CTGCGAGTTGATGTTGCCAT 59.193 50.000 0.00 0.00 0.00 4.40
307 308 0.522626 TGCGAGTTGATGTTGCCATG 59.477 50.000 0.00 0.00 0.00 3.66
308 309 0.179156 GCGAGTTGATGTTGCCATGG 60.179 55.000 7.63 7.63 0.00 3.66
309 310 0.452987 CGAGTTGATGTTGCCATGGG 59.547 55.000 15.13 0.00 0.00 4.00
319 320 4.476752 GCCATGGGCGTAACCGGA 62.477 66.667 15.13 0.00 39.62 5.14
320 321 2.203015 CCATGGGCGTAACCGGAG 60.203 66.667 9.46 0.00 40.62 4.63
321 322 2.727392 CCATGGGCGTAACCGGAGA 61.727 63.158 9.46 0.00 40.62 3.71
322 323 1.445942 CATGGGCGTAACCGGAGAT 59.554 57.895 9.46 0.00 40.62 2.75
323 324 0.880278 CATGGGCGTAACCGGAGATG 60.880 60.000 9.46 1.13 40.62 2.90
324 325 2.588034 GGGCGTAACCGGAGATGC 60.588 66.667 9.46 12.43 40.62 3.91
325 326 2.960129 GGCGTAACCGGAGATGCG 60.960 66.667 9.46 10.67 33.68 4.73
326 327 2.960129 GCGTAACCGGAGATGCGG 60.960 66.667 9.46 11.51 33.68 5.69
327 328 2.493030 CGTAACCGGAGATGCGGT 59.507 61.111 13.01 13.01 40.63 5.68
328 329 1.588139 CGTAACCGGAGATGCGGTC 60.588 63.158 18.95 6.71 37.54 4.79
329 330 1.227176 GTAACCGGAGATGCGGTCC 60.227 63.158 18.95 9.07 37.54 4.46
330 331 1.380785 TAACCGGAGATGCGGTCCT 60.381 57.895 18.95 7.10 37.54 3.85
331 332 1.672854 TAACCGGAGATGCGGTCCTG 61.673 60.000 18.95 0.00 37.54 3.86
332 333 4.899239 CCGGAGATGCGGTCCTGC 62.899 72.222 4.42 0.00 31.14 4.85
334 335 4.148825 GGAGATGCGGTCCTGCGT 62.149 66.667 0.79 0.79 37.81 5.24
335 336 2.887568 GAGATGCGGTCCTGCGTG 60.888 66.667 5.33 0.00 37.81 5.34
344 345 3.449227 TCCTGCGTGCGGGAGTAG 61.449 66.667 18.31 0.00 45.79 2.57
345 346 3.449227 CCTGCGTGCGGGAGTAGA 61.449 66.667 14.69 0.00 45.10 2.59
346 347 2.571757 CTGCGTGCGGGAGTAGAA 59.428 61.111 0.00 0.00 0.00 2.10
347 348 1.805945 CTGCGTGCGGGAGTAGAAC 60.806 63.158 0.00 0.00 0.00 3.01
348 349 2.879462 GCGTGCGGGAGTAGAACG 60.879 66.667 0.00 0.00 37.32 3.95
352 353 2.278013 GCGGGAGTAGAACGCGAG 60.278 66.667 15.93 0.00 43.98 5.03
363 364 4.496670 ACGCGAGTTAGGATGTGC 57.503 55.556 15.93 0.00 46.40 4.57
364 365 1.890894 ACGCGAGTTAGGATGTGCT 59.109 52.632 15.93 0.00 46.40 4.40
365 366 0.458543 ACGCGAGTTAGGATGTGCTG 60.459 55.000 15.93 0.00 46.40 4.41
366 367 1.756375 CGCGAGTTAGGATGTGCTGC 61.756 60.000 0.00 0.00 0.00 5.25
367 368 0.460987 GCGAGTTAGGATGTGCTGCT 60.461 55.000 0.00 0.00 0.00 4.24
368 369 1.565305 CGAGTTAGGATGTGCTGCTC 58.435 55.000 0.00 0.00 0.00 4.26
369 370 1.565305 GAGTTAGGATGTGCTGCTCG 58.435 55.000 0.00 0.00 0.00 5.03
370 371 1.135139 GAGTTAGGATGTGCTGCTCGA 59.865 52.381 0.00 0.00 0.00 4.04
371 372 1.135915 AGTTAGGATGTGCTGCTCGAG 59.864 52.381 8.45 8.45 0.00 4.04
372 373 1.135139 GTTAGGATGTGCTGCTCGAGA 59.865 52.381 18.75 0.02 0.00 4.04
373 374 1.474330 TAGGATGTGCTGCTCGAGAA 58.526 50.000 18.75 4.16 0.00 2.87
374 375 0.175302 AGGATGTGCTGCTCGAGAAG 59.825 55.000 18.75 17.72 0.00 2.85
375 376 0.174389 GGATGTGCTGCTCGAGAAGA 59.826 55.000 25.37 3.36 0.00 2.87
376 377 1.404717 GGATGTGCTGCTCGAGAAGAA 60.405 52.381 25.37 11.66 0.00 2.52
377 378 1.658095 GATGTGCTGCTCGAGAAGAAC 59.342 52.381 23.39 23.39 29.11 3.01
378 379 0.664466 TGTGCTGCTCGAGAAGAACG 60.664 55.000 25.37 0.00 31.26 3.95
379 380 1.080501 TGCTGCTCGAGAAGAACGG 60.081 57.895 25.37 8.02 0.00 4.44
380 381 1.213013 GCTGCTCGAGAAGAACGGA 59.787 57.895 25.37 0.00 0.00 4.69
381 382 0.179124 GCTGCTCGAGAAGAACGGAT 60.179 55.000 25.37 0.00 0.00 4.18
382 383 1.833860 CTGCTCGAGAAGAACGGATC 58.166 55.000 16.09 0.00 0.00 3.36
383 384 0.098905 TGCTCGAGAAGAACGGATCG 59.901 55.000 18.75 0.00 36.54 3.69
384 385 0.377554 GCTCGAGAAGAACGGATCGA 59.622 55.000 18.75 0.00 41.51 3.59
385 386 1.202154 GCTCGAGAAGAACGGATCGAA 60.202 52.381 18.75 0.00 42.95 3.71
386 387 2.442424 CTCGAGAAGAACGGATCGAAC 58.558 52.381 6.58 0.00 42.95 3.95
387 388 1.181001 CGAGAAGAACGGATCGAACG 58.819 55.000 10.78 10.78 37.35 3.95
388 389 0.915227 GAGAAGAACGGATCGAACGC 59.085 55.000 12.06 0.00 34.00 4.84
389 390 0.458025 AGAAGAACGGATCGAACGCC 60.458 55.000 12.06 2.86 34.00 5.68
390 391 0.458025 GAAGAACGGATCGAACGCCT 60.458 55.000 12.06 7.45 34.00 5.52
391 392 0.736325 AAGAACGGATCGAACGCCTG 60.736 55.000 12.06 3.57 34.00 4.85
392 393 1.445582 GAACGGATCGAACGCCTGT 60.446 57.895 12.06 4.10 34.00 4.00
393 394 1.005394 AACGGATCGAACGCCTGTT 60.005 52.632 12.06 8.90 42.23 3.16
394 395 1.289109 AACGGATCGAACGCCTGTTG 61.289 55.000 12.06 0.00 38.78 3.33
395 396 1.445410 CGGATCGAACGCCTGTTGA 60.445 57.895 0.00 0.00 38.78 3.18
396 397 0.806102 CGGATCGAACGCCTGTTGAT 60.806 55.000 0.00 0.00 38.78 2.57
397 398 0.652592 GGATCGAACGCCTGTTGATG 59.347 55.000 0.00 0.00 38.78 3.07
398 399 0.652592 GATCGAACGCCTGTTGATGG 59.347 55.000 0.00 0.00 38.78 3.51
399 400 1.369091 ATCGAACGCCTGTTGATGGC 61.369 55.000 0.00 0.00 46.42 4.40
406 407 2.397751 CCTGTTGATGGCACGATCC 58.602 57.895 0.00 0.00 0.00 3.36
407 408 1.431488 CCTGTTGATGGCACGATCCG 61.431 60.000 0.00 0.00 0.00 4.18
408 409 0.460109 CTGTTGATGGCACGATCCGA 60.460 55.000 0.00 0.00 0.00 4.55
409 410 0.739462 TGTTGATGGCACGATCCGAC 60.739 55.000 0.00 0.00 0.00 4.79
410 411 1.518352 TTGATGGCACGATCCGACG 60.518 57.895 0.00 0.00 39.31 5.12
411 412 2.658593 GATGGCACGATCCGACGG 60.659 66.667 7.84 7.84 37.61 4.79
412 413 4.891727 ATGGCACGATCCGACGGC 62.892 66.667 9.66 0.00 37.61 5.68
414 415 3.896133 GGCACGATCCGACGGCTA 61.896 66.667 9.66 0.00 37.61 3.93
415 416 2.654404 GCACGATCCGACGGCTAC 60.654 66.667 9.66 1.84 37.61 3.58
417 418 2.512286 ACGATCCGACGGCTACGA 60.512 61.111 24.81 4.67 44.60 3.43
418 419 2.248724 CGATCCGACGGCTACGAG 59.751 66.667 9.66 0.00 44.60 4.18
419 420 2.638154 GATCCGACGGCTACGAGG 59.362 66.667 9.66 0.00 44.60 4.63
420 421 2.905807 GATCCGACGGCTACGAGGG 61.906 68.421 9.66 0.00 44.60 4.30
427 428 2.894919 GGCTACGAGGGCGGTTTA 59.105 61.111 0.00 0.00 43.17 2.01
428 429 1.218854 GGCTACGAGGGCGGTTTAA 59.781 57.895 0.00 0.00 43.17 1.52
429 430 0.391528 GGCTACGAGGGCGGTTTAAA 60.392 55.000 0.00 0.00 43.17 1.52
430 431 1.441738 GCTACGAGGGCGGTTTAAAA 58.558 50.000 0.00 0.00 43.17 1.52
431 432 1.129251 GCTACGAGGGCGGTTTAAAAC 59.871 52.381 0.00 0.00 43.17 2.43
432 433 2.691927 CTACGAGGGCGGTTTAAAACT 58.308 47.619 1.03 0.00 43.17 2.66
433 434 1.232119 ACGAGGGCGGTTTAAAACTG 58.768 50.000 1.03 0.00 43.17 3.16
434 435 0.519961 CGAGGGCGGTTTAAAACTGG 59.480 55.000 1.03 0.00 38.23 4.00
439 440 2.785713 GCGGTTTAAAACTGGCTCAA 57.214 45.000 1.03 0.00 38.23 3.02
440 441 3.086818 GCGGTTTAAAACTGGCTCAAA 57.913 42.857 1.03 0.00 38.23 2.69
441 442 3.649073 GCGGTTTAAAACTGGCTCAAAT 58.351 40.909 1.03 0.00 38.23 2.32
442 443 4.055360 GCGGTTTAAAACTGGCTCAAATT 58.945 39.130 1.03 0.00 38.23 1.82
443 444 5.224135 GCGGTTTAAAACTGGCTCAAATTA 58.776 37.500 1.03 0.00 38.23 1.40
444 445 5.867174 GCGGTTTAAAACTGGCTCAAATTAT 59.133 36.000 1.03 0.00 38.23 1.28
445 446 6.034577 GCGGTTTAAAACTGGCTCAAATTATC 59.965 38.462 1.03 0.00 38.23 1.75
446 447 7.312899 CGGTTTAAAACTGGCTCAAATTATCT 58.687 34.615 1.03 0.00 34.07 1.98
447 448 7.273381 CGGTTTAAAACTGGCTCAAATTATCTG 59.727 37.037 1.03 0.00 34.07 2.90
448 449 7.545615 GGTTTAAAACTGGCTCAAATTATCTGG 59.454 37.037 0.00 0.00 0.00 3.86
449 450 7.775053 TTAAAACTGGCTCAAATTATCTGGT 57.225 32.000 0.00 0.00 0.00 4.00
450 451 6.670695 AAAACTGGCTCAAATTATCTGGTT 57.329 33.333 0.00 0.00 0.00 3.67
451 452 5.649782 AACTGGCTCAAATTATCTGGTTG 57.350 39.130 0.00 0.00 0.00 3.77
452 453 4.922206 ACTGGCTCAAATTATCTGGTTGA 58.078 39.130 0.00 0.00 0.00 3.18
453 454 5.513233 ACTGGCTCAAATTATCTGGTTGAT 58.487 37.500 0.00 0.00 39.11 2.57
454 455 5.954150 ACTGGCTCAAATTATCTGGTTGATT 59.046 36.000 0.00 0.00 36.65 2.57
455 456 6.438425 ACTGGCTCAAATTATCTGGTTGATTT 59.562 34.615 0.00 0.00 36.65 2.17
456 457 6.632909 TGGCTCAAATTATCTGGTTGATTTG 58.367 36.000 0.00 0.00 39.58 2.32
457 458 6.211184 TGGCTCAAATTATCTGGTTGATTTGT 59.789 34.615 7.33 0.00 39.37 2.83
458 459 7.395772 TGGCTCAAATTATCTGGTTGATTTGTA 59.604 33.333 7.33 0.00 39.37 2.41
459 460 7.917505 GGCTCAAATTATCTGGTTGATTTGTAG 59.082 37.037 7.33 5.64 39.37 2.74
460 461 7.433425 GCTCAAATTATCTGGTTGATTTGTAGC 59.567 37.037 7.33 10.03 39.37 3.58
461 462 7.471721 TCAAATTATCTGGTTGATTTGTAGCG 58.528 34.615 7.33 0.00 39.37 4.26
462 463 4.875544 TTATCTGGTTGATTTGTAGCGC 57.124 40.909 0.00 0.00 36.65 5.92
463 464 2.472695 TCTGGTTGATTTGTAGCGCT 57.527 45.000 17.26 17.26 0.00 5.92
464 465 2.346803 TCTGGTTGATTTGTAGCGCTC 58.653 47.619 16.34 6.54 0.00 5.03
465 466 1.061131 CTGGTTGATTTGTAGCGCTCG 59.939 52.381 16.34 0.00 0.00 5.03
466 467 0.247695 GGTTGATTTGTAGCGCTCGC 60.248 55.000 16.34 9.38 42.33 5.03
467 468 0.247695 GTTGATTTGTAGCGCTCGCC 60.248 55.000 16.34 3.52 43.17 5.54
516 517 7.639062 AATCACATACTCCTTCCTCCATTAT 57.361 36.000 0.00 0.00 0.00 1.28
526 527 2.733956 TCCTCCATTATGTTTGGCCAC 58.266 47.619 3.88 0.00 34.06 5.01
541 542 3.637769 TGGCCACTTAGGTTTTTGTCTT 58.362 40.909 0.00 0.00 40.61 3.01
557 558 7.687941 TTTTGTCTTGTTCTTTCTCTTGTCT 57.312 32.000 0.00 0.00 0.00 3.41
558 559 6.910536 TTGTCTTGTTCTTTCTCTTGTCTC 57.089 37.500 0.00 0.00 0.00 3.36
559 560 6.227298 TGTCTTGTTCTTTCTCTTGTCTCT 57.773 37.500 0.00 0.00 0.00 3.10
560 561 6.644347 TGTCTTGTTCTTTCTCTTGTCTCTT 58.356 36.000 0.00 0.00 0.00 2.85
561 562 6.536582 TGTCTTGTTCTTTCTCTTGTCTCTTG 59.463 38.462 0.00 0.00 0.00 3.02
562 563 6.536941 GTCTTGTTCTTTCTCTTGTCTCTTGT 59.463 38.462 0.00 0.00 0.00 3.16
563 564 6.758886 TCTTGTTCTTTCTCTTGTCTCTTGTC 59.241 38.462 0.00 0.00 0.00 3.18
576 577 3.035363 TCTCTTGTCTTGTACCACACCA 58.965 45.455 0.00 0.00 0.00 4.17
581 582 0.105224 TCTTGTACCACACCACACCG 59.895 55.000 0.00 0.00 0.00 4.94
626 627 8.300286 GGGATGGCTATTTTAGATTTTTCTAGC 58.700 37.037 0.00 0.00 0.00 3.42
645 646 9.555727 TTTCTAGCTACAAGTTGACAGTTTATT 57.444 29.630 10.54 0.00 0.00 1.40
683 684 9.927668 TTTTCCTCATTCATAGATTGGTTTTTC 57.072 29.630 0.00 0.00 0.00 2.29
853 858 9.678941 GTTTTAAAGAAACCTGAATAGTTCCTG 57.321 33.333 0.00 0.00 0.00 3.86
918 2408 2.024176 TCAAGTCCAGCCCAGTAGAA 57.976 50.000 0.00 0.00 0.00 2.10
1535 3031 2.636830 CCTGTTCGATGAAATGCTCCT 58.363 47.619 0.00 0.00 0.00 3.69
1698 3194 3.160047 ATCAGGGGGCTCTGCGAG 61.160 66.667 0.00 1.80 34.91 5.03
1703 3199 3.695606 GGGGCTCTGCGAGTGTGA 61.696 66.667 7.27 0.00 31.39 3.58
1797 3293 3.056313 GCTCATCCGTGGCCTTTGC 62.056 63.158 3.32 0.00 0.00 3.68
2064 3560 5.633830 TTAATGAGGCTCAAGCAAAAGAG 57.366 39.130 22.84 0.00 44.36 2.85
2112 3608 4.744795 TTCTCTTATCAAGGGACTCTGC 57.255 45.455 0.00 0.00 37.85 4.26
2160 3656 3.199289 TGCAGGTCATGAATGAGATGTCT 59.801 43.478 12.25 0.00 37.51 3.41
2234 3730 4.943093 GCTGTGCAAAATGGGGAATATTTT 59.057 37.500 0.00 0.00 38.02 1.82
2453 3949 3.075283 TCTGGGAAGGCCAATGAAGTTAA 59.925 43.478 5.01 0.00 35.15 2.01
2454 3950 3.161866 TGGGAAGGCCAATGAAGTTAAC 58.838 45.455 5.01 0.00 35.15 2.01
2455 3951 2.163613 GGGAAGGCCAATGAAGTTAACG 59.836 50.000 5.01 0.00 35.15 3.18
2456 3952 3.078837 GGAAGGCCAATGAAGTTAACGA 58.921 45.455 5.01 0.00 0.00 3.85
2457 3953 3.504520 GGAAGGCCAATGAAGTTAACGAA 59.495 43.478 5.01 0.00 0.00 3.85
2490 3991 5.419155 AGAGATGACACTTAAAGGATGTCGA 59.581 40.000 0.00 0.00 44.67 4.20
2515 4016 9.609346 GACCAAACACTATTACCTACAACATAT 57.391 33.333 0.00 0.00 0.00 1.78
2619 4120 3.109230 GATGCAGTTAGCTTCAACACG 57.891 47.619 0.00 0.00 44.45 4.49
2665 4166 0.738975 TGAGATTGAGGGAGCGTACG 59.261 55.000 11.84 11.84 0.00 3.67
3429 4941 8.764558 TGTATTAAGAGTTCCCTGCATTAAGTA 58.235 33.333 0.00 0.00 0.00 2.24
3597 7092 8.798859 ATTTATATTACATGTCCAGATGGAGC 57.201 34.615 0.00 0.00 46.49 4.70
3625 7120 6.097915 TGCTAGTAGAAGTAAGTGCTGTTT 57.902 37.500 0.00 0.00 0.00 2.83
3630 7125 6.113411 AGTAGAAGTAAGTGCTGTTTTGTGT 58.887 36.000 0.00 0.00 0.00 3.72
3631 7126 5.235305 AGAAGTAAGTGCTGTTTTGTGTG 57.765 39.130 0.00 0.00 0.00 3.82
3638 7133 2.345341 GTGCTGTTTTGTGTGCTTTGTC 59.655 45.455 0.00 0.00 0.00 3.18
3824 7320 7.220030 TCTATAATCTTTGGTGAGAGAATGGC 58.780 38.462 0.00 0.00 0.00 4.40
3932 7428 7.446001 AAAAAGTCAAAGAGCTGAGGATTAG 57.554 36.000 0.00 0.00 0.00 1.73
3938 7434 3.274095 AGAGCTGAGGATTAGCAAACC 57.726 47.619 0.00 0.00 43.53 3.27
3940 7436 3.009473 AGAGCTGAGGATTAGCAAACCAA 59.991 43.478 0.00 0.00 43.53 3.67
3942 7438 2.424956 GCTGAGGATTAGCAAACCAAGG 59.575 50.000 0.00 0.00 40.81 3.61
3943 7439 3.690460 CTGAGGATTAGCAAACCAAGGT 58.310 45.455 0.00 0.00 0.00 3.50
3944 7440 4.843728 CTGAGGATTAGCAAACCAAGGTA 58.156 43.478 0.00 0.00 0.00 3.08
3945 7441 4.585879 TGAGGATTAGCAAACCAAGGTAC 58.414 43.478 0.00 0.00 0.00 3.34
3948 7444 5.390387 AGGATTAGCAAACCAAGGTACAAA 58.610 37.500 0.00 0.00 0.00 2.83
4135 7631 5.749588 CAGTTGAACATTGTGCTCATTTTGA 59.250 36.000 0.00 0.00 0.00 2.69
4148 7644 3.809234 TCATTTTGACGAATCAACAGCG 58.191 40.909 0.00 0.00 44.66 5.18
4249 7745 9.811995 TGTATAGTTTTTACACTCGCTCATAAT 57.188 29.630 0.00 0.00 0.00 1.28
4459 7955 2.625737 ACCATGAGAAATCTGAGTGCG 58.374 47.619 0.00 0.00 0.00 5.34
4551 8047 5.105997 GCATTCAAGAGTTGCCTGAGTTATT 60.106 40.000 0.00 0.00 0.00 1.40
4621 8117 9.342308 GATAATGTAATCATCCTCCAGTTGAAA 57.658 33.333 0.00 0.00 32.56 2.69
4672 8168 9.357652 CCACAAGTATGGAATCAAAATAAACAG 57.642 33.333 0.00 0.00 43.02 3.16
4717 8215 9.338291 GGTTTCCATTTCTTTATTTAGACGTTC 57.662 33.333 0.00 0.00 0.00 3.95
4782 8280 6.470278 TGGATCCTTATCAGCTTATGTCATG 58.530 40.000 14.23 0.00 33.41 3.07
4810 8308 8.636843 CGATATACAGGAAAGCGAATACTAAAC 58.363 37.037 0.00 0.00 0.00 2.01
4882 8380 9.941664 CTGATACATCATGGAGTGTTTATTTTC 57.058 33.333 0.00 0.00 36.02 2.29
4883 8381 8.902806 TGATACATCATGGAGTGTTTATTTTCC 58.097 33.333 0.00 0.00 0.00 3.13
4923 8638 9.607285 GTATTGTTCTGTGTTTTATTCGATGTT 57.393 29.630 0.00 0.00 0.00 2.71
4931 8646 6.150307 TGTGTTTTATTCGATGTTGTATGGCT 59.850 34.615 0.00 0.00 0.00 4.75
5090 8805 8.212317 TCCTTGTTTTAAGCTTAACGTTAGTT 57.788 30.769 18.45 6.51 43.95 2.24
5328 9048 7.926555 ACTAGTATTTTGGTAGATCATGTTCCG 59.073 37.037 0.00 0.00 0.00 4.30
5457 9181 2.519302 ACCTGCTTGTTTGGCGCT 60.519 55.556 7.64 0.00 0.00 5.92
5526 9250 2.897969 TCCAGTAAGTTCCAGGTCTCAC 59.102 50.000 0.00 0.00 0.00 3.51
5528 9252 3.306364 CCAGTAAGTTCCAGGTCTCACAG 60.306 52.174 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 3.707156 CTTCAATGCAGCGTCGCCG 62.707 63.158 14.86 4.46 37.07 6.46
15 16 2.099062 CTTCAATGCAGCGTCGCC 59.901 61.111 14.86 0.00 0.00 5.54
16 17 2.575262 GCTTCAATGCAGCGTCGC 60.575 61.111 9.80 9.80 0.00 5.19
21 22 1.225854 GTCGACGCTTCAATGCAGC 60.226 57.895 0.00 0.00 0.00 5.25
22 23 1.291184 TGGTCGACGCTTCAATGCAG 61.291 55.000 9.92 0.00 0.00 4.41
23 24 0.673333 ATGGTCGACGCTTCAATGCA 60.673 50.000 9.92 0.00 0.00 3.96
24 25 0.247814 CATGGTCGACGCTTCAATGC 60.248 55.000 9.92 0.00 0.00 3.56
25 26 1.078709 ACATGGTCGACGCTTCAATG 58.921 50.000 9.92 8.58 0.00 2.82
26 27 1.464608 CAACATGGTCGACGCTTCAAT 59.535 47.619 9.92 0.00 0.00 2.57
27 28 0.865111 CAACATGGTCGACGCTTCAA 59.135 50.000 9.92 0.00 0.00 2.69
28 29 0.249699 ACAACATGGTCGACGCTTCA 60.250 50.000 9.92 1.71 0.00 3.02
29 30 0.163788 CACAACATGGTCGACGCTTC 59.836 55.000 9.92 0.00 0.00 3.86
30 31 1.227999 CCACAACATGGTCGACGCTT 61.228 55.000 9.92 0.00 44.46 4.68
31 32 1.667830 CCACAACATGGTCGACGCT 60.668 57.895 9.92 0.00 44.46 5.07
32 33 2.860293 CCACAACATGGTCGACGC 59.140 61.111 9.92 3.20 44.46 5.19
40 41 3.210223 TTGCGCCAGCCACAACATG 62.210 57.895 4.18 0.00 44.33 3.21
41 42 2.911509 TTGCGCCAGCCACAACAT 60.912 55.556 4.18 0.00 44.33 2.71
42 43 3.898509 GTTGCGCCAGCCACAACA 61.899 61.111 4.18 0.00 42.50 3.33
43 44 3.542629 GAGTTGCGCCAGCCACAAC 62.543 63.158 4.18 12.80 41.03 3.32
44 45 3.286751 GAGTTGCGCCAGCCACAA 61.287 61.111 4.18 0.00 41.03 3.33
50 51 3.114616 CTGTCGGAGTTGCGCCAG 61.115 66.667 4.18 0.00 0.00 4.85
51 52 3.923864 ACTGTCGGAGTTGCGCCA 61.924 61.111 4.18 0.00 0.00 5.69
52 53 3.414700 CACTGTCGGAGTTGCGCC 61.415 66.667 4.18 0.00 29.75 6.53
53 54 2.661866 ACACTGTCGGAGTTGCGC 60.662 61.111 0.00 0.00 29.75 6.09
54 55 1.591594 ACACACTGTCGGAGTTGCG 60.592 57.895 0.00 0.00 29.75 4.85
55 56 1.934463 CACACACTGTCGGAGTTGC 59.066 57.895 0.00 0.00 29.75 4.17
56 57 1.821241 CGCACACACTGTCGGAGTTG 61.821 60.000 0.00 0.00 29.75 3.16
57 58 1.591594 CGCACACACTGTCGGAGTT 60.592 57.895 0.00 0.00 29.75 3.01
58 59 2.027605 CGCACACACTGTCGGAGT 59.972 61.111 0.00 0.00 34.02 3.85
59 60 2.734723 CCGCACACACTGTCGGAG 60.735 66.667 2.32 0.00 40.75 4.63
60 61 4.961511 GCCGCACACACTGTCGGA 62.962 66.667 11.06 0.00 40.75 4.55
63 64 3.406361 CTCGCCGCACACACTGTC 61.406 66.667 0.00 0.00 0.00 3.51
64 65 4.969196 CCTCGCCGCACACACTGT 62.969 66.667 0.00 0.00 0.00 3.55
86 87 4.873129 CTCCGTCGCCGTCCATGG 62.873 72.222 4.97 4.97 0.00 3.66
94 95 3.869272 CAATGCAGCTCCGTCGCC 61.869 66.667 0.00 0.00 0.00 5.54
95 96 3.869272 CCAATGCAGCTCCGTCGC 61.869 66.667 0.00 0.00 0.00 5.19
96 97 2.125552 TCCAATGCAGCTCCGTCG 60.126 61.111 0.00 0.00 0.00 5.12
97 98 2.467826 GCTCCAATGCAGCTCCGTC 61.468 63.158 0.00 0.00 33.75 4.79
98 99 2.437359 GCTCCAATGCAGCTCCGT 60.437 61.111 0.00 0.00 33.75 4.69
99 100 2.437180 TGCTCCAATGCAGCTCCG 60.437 61.111 0.00 0.00 38.12 4.63
100 101 1.035932 ATGTGCTCCAATGCAGCTCC 61.036 55.000 0.00 0.00 44.20 4.70
101 102 0.100682 CATGTGCTCCAATGCAGCTC 59.899 55.000 0.00 0.00 44.20 4.09
102 103 0.323087 TCATGTGCTCCAATGCAGCT 60.323 50.000 0.00 0.00 44.20 4.24
103 104 0.744874 ATCATGTGCTCCAATGCAGC 59.255 50.000 0.00 0.00 44.20 5.25
104 105 2.492019 CATCATGTGCTCCAATGCAG 57.508 50.000 0.00 0.00 44.20 4.41
115 116 1.908065 TGTCGTCGTAGCATCATGTG 58.092 50.000 0.00 0.00 0.00 3.21
116 117 2.860136 CAATGTCGTCGTAGCATCATGT 59.140 45.455 0.00 0.00 0.00 3.21
117 118 2.347939 GCAATGTCGTCGTAGCATCATG 60.348 50.000 0.00 0.00 0.00 3.07
118 119 1.860950 GCAATGTCGTCGTAGCATCAT 59.139 47.619 0.00 0.00 0.00 2.45
119 120 1.135112 AGCAATGTCGTCGTAGCATCA 60.135 47.619 0.00 0.00 0.00 3.07
120 121 1.256376 CAGCAATGTCGTCGTAGCATC 59.744 52.381 0.00 0.00 0.00 3.91
121 122 1.280982 CAGCAATGTCGTCGTAGCAT 58.719 50.000 0.00 0.00 0.00 3.79
122 123 1.351430 GCAGCAATGTCGTCGTAGCA 61.351 55.000 0.00 0.00 0.00 3.49
123 124 1.345176 GCAGCAATGTCGTCGTAGC 59.655 57.895 0.00 0.00 0.00 3.58
124 125 0.735978 TGGCAGCAATGTCGTCGTAG 60.736 55.000 0.00 0.00 0.00 3.51
125 126 0.108377 ATGGCAGCAATGTCGTCGTA 60.108 50.000 0.00 0.00 0.00 3.43
126 127 1.375908 ATGGCAGCAATGTCGTCGT 60.376 52.632 0.00 0.00 0.00 4.34
127 128 1.061411 CATGGCAGCAATGTCGTCG 59.939 57.895 0.91 0.00 0.00 5.12
128 129 1.430632 CCATGGCAGCAATGTCGTC 59.569 57.895 9.06 0.00 0.00 4.20
129 130 2.703798 GCCATGGCAGCAATGTCGT 61.704 57.895 32.08 0.00 41.49 4.34
130 131 2.103538 GCCATGGCAGCAATGTCG 59.896 61.111 32.08 0.00 41.49 4.35
131 132 2.103538 CGCCATGGCAGCAATGTC 59.896 61.111 34.93 3.77 42.06 3.06
132 133 3.454573 CCGCCATGGCAGCAATGT 61.455 61.111 34.93 0.00 42.06 2.71
133 134 3.142162 TCCGCCATGGCAGCAATG 61.142 61.111 34.93 17.95 42.06 2.82
134 135 3.142838 GTCCGCCATGGCAGCAAT 61.143 61.111 34.93 0.00 42.06 3.56
135 136 4.349503 AGTCCGCCATGGCAGCAA 62.350 61.111 34.93 14.83 42.06 3.91
138 139 4.415150 ACCAGTCCGCCATGGCAG 62.415 66.667 34.93 25.44 40.45 4.85
139 140 4.720902 CACCAGTCCGCCATGGCA 62.721 66.667 34.93 15.49 40.45 4.92
141 142 3.687321 CTCCACCAGTCCGCCATGG 62.687 68.421 7.63 7.63 42.60 3.66
142 143 2.124983 CTCCACCAGTCCGCCATG 60.125 66.667 0.00 0.00 0.00 3.66
143 144 4.101448 GCTCCACCAGTCCGCCAT 62.101 66.667 0.00 0.00 0.00 4.40
145 146 4.767255 CAGCTCCACCAGTCCGCC 62.767 72.222 0.00 0.00 0.00 6.13
148 149 3.537206 AACGCAGCTCCACCAGTCC 62.537 63.158 0.00 0.00 0.00 3.85
149 150 2.031163 AACGCAGCTCCACCAGTC 59.969 61.111 0.00 0.00 0.00 3.51
150 151 2.281070 CAACGCAGCTCCACCAGT 60.281 61.111 0.00 0.00 0.00 4.00
151 152 3.730761 GCAACGCAGCTCCACCAG 61.731 66.667 0.00 0.00 0.00 4.00
152 153 4.560743 TGCAACGCAGCTCCACCA 62.561 61.111 1.27 0.00 33.32 4.17
153 154 3.286751 TTGCAACGCAGCTCCACC 61.287 61.111 0.00 0.00 40.61 4.61
154 155 2.050985 GTTGCAACGCAGCTCCAC 60.051 61.111 14.90 0.00 40.61 4.02
155 156 2.515757 TGTTGCAACGCAGCTCCA 60.516 55.556 23.79 1.41 40.35 3.86
156 157 2.253452 CTGTTGCAACGCAGCTCC 59.747 61.111 23.79 0.00 40.35 4.70
157 158 1.785041 TTCCTGTTGCAACGCAGCTC 61.785 55.000 23.79 0.00 40.35 4.09
158 159 1.789078 CTTCCTGTTGCAACGCAGCT 61.789 55.000 23.79 0.00 40.35 4.24
159 160 1.370900 CTTCCTGTTGCAACGCAGC 60.371 57.895 23.79 0.80 40.61 5.25
160 161 0.236711 CTCTTCCTGTTGCAACGCAG 59.763 55.000 23.79 16.30 40.61 5.18
161 162 1.165907 CCTCTTCCTGTTGCAACGCA 61.166 55.000 23.79 7.32 36.47 5.24
162 163 1.576421 CCTCTTCCTGTTGCAACGC 59.424 57.895 23.79 2.38 0.00 4.84
163 164 1.576421 GCCTCTTCCTGTTGCAACG 59.424 57.895 23.79 17.58 0.00 4.10
164 165 0.884704 TCGCCTCTTCCTGTTGCAAC 60.885 55.000 22.83 22.83 0.00 4.17
165 166 0.884704 GTCGCCTCTTCCTGTTGCAA 60.885 55.000 0.00 0.00 0.00 4.08
166 167 1.301716 GTCGCCTCTTCCTGTTGCA 60.302 57.895 0.00 0.00 0.00 4.08
167 168 2.383527 CGTCGCCTCTTCCTGTTGC 61.384 63.158 0.00 0.00 0.00 4.17
168 169 0.734253 CTCGTCGCCTCTTCCTGTTG 60.734 60.000 0.00 0.00 0.00 3.33
169 170 1.179814 ACTCGTCGCCTCTTCCTGTT 61.180 55.000 0.00 0.00 0.00 3.16
170 171 1.587933 GACTCGTCGCCTCTTCCTGT 61.588 60.000 0.00 0.00 0.00 4.00
171 172 1.137825 GACTCGTCGCCTCTTCCTG 59.862 63.158 0.00 0.00 0.00 3.86
172 173 2.400158 CGACTCGTCGCCTCTTCCT 61.400 63.158 6.52 0.00 46.50 3.36
173 174 2.100603 CGACTCGTCGCCTCTTCC 59.899 66.667 6.52 0.00 46.50 3.46
182 183 2.887568 CCATGGCAGCGACTCGTC 60.888 66.667 0.00 0.00 0.00 4.20
232 233 2.108514 AATGACTGCGCCATCGTGG 61.109 57.895 4.18 0.25 41.55 4.94
233 234 1.061411 CAATGACTGCGCCATCGTG 59.939 57.895 4.18 1.04 38.14 4.35
234 235 2.108514 CCAATGACTGCGCCATCGT 61.109 57.895 4.18 0.00 38.14 3.73
235 236 1.647545 AACCAATGACTGCGCCATCG 61.648 55.000 4.18 0.00 39.07 3.84
236 237 0.179156 CAACCAATGACTGCGCCATC 60.179 55.000 4.18 2.38 0.00 3.51
237 238 0.895100 ACAACCAATGACTGCGCCAT 60.895 50.000 4.18 0.00 0.00 4.40
238 239 1.106351 AACAACCAATGACTGCGCCA 61.106 50.000 4.18 0.00 0.00 5.69
239 240 0.664166 CAACAACCAATGACTGCGCC 60.664 55.000 4.18 0.00 0.00 6.53
240 241 0.664166 CCAACAACCAATGACTGCGC 60.664 55.000 0.00 0.00 0.00 6.09
241 242 0.950836 TCCAACAACCAATGACTGCG 59.049 50.000 0.00 0.00 0.00 5.18
242 243 2.863704 GCTTCCAACAACCAATGACTGC 60.864 50.000 0.00 0.00 0.00 4.40
243 244 2.624838 AGCTTCCAACAACCAATGACTG 59.375 45.455 0.00 0.00 0.00 3.51
244 245 2.624838 CAGCTTCCAACAACCAATGACT 59.375 45.455 0.00 0.00 0.00 3.41
245 246 2.622942 TCAGCTTCCAACAACCAATGAC 59.377 45.455 0.00 0.00 0.00 3.06
246 247 2.942804 TCAGCTTCCAACAACCAATGA 58.057 42.857 0.00 0.00 0.00 2.57
247 248 3.006110 ACATCAGCTTCCAACAACCAATG 59.994 43.478 0.00 0.00 0.00 2.82
248 249 3.006110 CACATCAGCTTCCAACAACCAAT 59.994 43.478 0.00 0.00 0.00 3.16
249 250 2.361757 CACATCAGCTTCCAACAACCAA 59.638 45.455 0.00 0.00 0.00 3.67
250 251 1.955778 CACATCAGCTTCCAACAACCA 59.044 47.619 0.00 0.00 0.00 3.67
251 252 1.956477 ACACATCAGCTTCCAACAACC 59.044 47.619 0.00 0.00 0.00 3.77
252 253 4.320494 CCTTACACATCAGCTTCCAACAAC 60.320 45.833 0.00 0.00 0.00 3.32
253 254 3.820467 CCTTACACATCAGCTTCCAACAA 59.180 43.478 0.00 0.00 0.00 2.83
254 255 3.181445 ACCTTACACATCAGCTTCCAACA 60.181 43.478 0.00 0.00 0.00 3.33
255 256 3.412386 ACCTTACACATCAGCTTCCAAC 58.588 45.455 0.00 0.00 0.00 3.77
256 257 3.788227 ACCTTACACATCAGCTTCCAA 57.212 42.857 0.00 0.00 0.00 3.53
257 258 3.788227 AACCTTACACATCAGCTTCCA 57.212 42.857 0.00 0.00 0.00 3.53
258 259 4.327680 AGAAACCTTACACATCAGCTTCC 58.672 43.478 0.00 0.00 0.00 3.46
259 260 5.389935 CGAAGAAACCTTACACATCAGCTTC 60.390 44.000 0.00 0.00 0.00 3.86
260 261 4.452455 CGAAGAAACCTTACACATCAGCTT 59.548 41.667 0.00 0.00 0.00 3.74
261 262 3.997021 CGAAGAAACCTTACACATCAGCT 59.003 43.478 0.00 0.00 0.00 4.24
262 263 3.125316 CCGAAGAAACCTTACACATCAGC 59.875 47.826 0.00 0.00 0.00 4.26
263 264 4.566004 TCCGAAGAAACCTTACACATCAG 58.434 43.478 0.00 0.00 0.00 2.90
264 265 4.566004 CTCCGAAGAAACCTTACACATCA 58.434 43.478 0.00 0.00 0.00 3.07
265 266 3.371285 GCTCCGAAGAAACCTTACACATC 59.629 47.826 0.00 0.00 0.00 3.06
266 267 3.008049 AGCTCCGAAGAAACCTTACACAT 59.992 43.478 0.00 0.00 0.00 3.21
267 268 2.367567 AGCTCCGAAGAAACCTTACACA 59.632 45.455 0.00 0.00 0.00 3.72
268 269 2.737252 CAGCTCCGAAGAAACCTTACAC 59.263 50.000 0.00 0.00 0.00 2.90
269 270 2.870435 GCAGCTCCGAAGAAACCTTACA 60.870 50.000 0.00 0.00 0.00 2.41
270 271 1.732809 GCAGCTCCGAAGAAACCTTAC 59.267 52.381 0.00 0.00 0.00 2.34
271 272 1.671850 CGCAGCTCCGAAGAAACCTTA 60.672 52.381 0.00 0.00 0.00 2.69
272 273 0.951040 CGCAGCTCCGAAGAAACCTT 60.951 55.000 0.00 0.00 0.00 3.50
273 274 1.374758 CGCAGCTCCGAAGAAACCT 60.375 57.895 0.00 0.00 0.00 3.50
274 275 1.355066 CTCGCAGCTCCGAAGAAACC 61.355 60.000 0.00 0.00 36.72 3.27
275 276 0.667792 ACTCGCAGCTCCGAAGAAAC 60.668 55.000 0.00 0.00 36.72 2.78
276 277 0.033504 AACTCGCAGCTCCGAAGAAA 59.966 50.000 0.00 0.00 36.72 2.52
277 278 0.667487 CAACTCGCAGCTCCGAAGAA 60.667 55.000 0.00 0.00 36.72 2.52
278 279 1.080501 CAACTCGCAGCTCCGAAGA 60.081 57.895 0.00 0.00 36.72 2.87
279 280 0.459237 ATCAACTCGCAGCTCCGAAG 60.459 55.000 0.00 0.00 36.72 3.79
280 281 0.737367 CATCAACTCGCAGCTCCGAA 60.737 55.000 0.00 0.00 36.72 4.30
281 282 1.153765 CATCAACTCGCAGCTCCGA 60.154 57.895 0.00 0.00 35.68 4.55
282 283 1.016130 AACATCAACTCGCAGCTCCG 61.016 55.000 0.00 0.00 0.00 4.63
283 284 0.445436 CAACATCAACTCGCAGCTCC 59.555 55.000 0.00 0.00 0.00 4.70
284 285 0.179205 GCAACATCAACTCGCAGCTC 60.179 55.000 0.00 0.00 0.00 4.09
285 286 1.580845 GGCAACATCAACTCGCAGCT 61.581 55.000 0.00 0.00 0.00 4.24
286 287 1.154150 GGCAACATCAACTCGCAGC 60.154 57.895 0.00 0.00 0.00 5.25
287 288 2.246841 TGGCAACATCAACTCGCAG 58.753 52.632 0.00 0.00 46.17 5.18
288 289 4.471761 TGGCAACATCAACTCGCA 57.528 50.000 0.00 0.00 46.17 5.10
302 303 4.476752 TCCGGTTACGCCCATGGC 62.477 66.667 6.09 0.58 46.75 4.40
303 304 2.040009 ATCTCCGGTTACGCCCATGG 62.040 60.000 4.14 4.14 39.22 3.66
304 305 0.880278 CATCTCCGGTTACGCCCATG 60.880 60.000 0.00 0.00 39.22 3.66
305 306 1.445942 CATCTCCGGTTACGCCCAT 59.554 57.895 0.00 0.00 39.22 4.00
306 307 2.897207 CATCTCCGGTTACGCCCA 59.103 61.111 0.00 0.00 39.22 5.36
307 308 2.588034 GCATCTCCGGTTACGCCC 60.588 66.667 0.00 0.00 39.22 6.13
308 309 2.960129 CGCATCTCCGGTTACGCC 60.960 66.667 0.00 0.00 39.22 5.68
309 310 2.960129 CCGCATCTCCGGTTACGC 60.960 66.667 0.00 0.00 43.24 4.42
317 318 4.148825 ACGCAGGACCGCATCTCC 62.149 66.667 8.64 0.00 0.00 3.71
318 319 2.887568 CACGCAGGACCGCATCTC 60.888 66.667 8.64 0.00 0.00 2.75
326 327 3.701604 CTACTCCCGCACGCAGGAC 62.702 68.421 0.00 0.00 0.00 3.85
327 328 3.449227 CTACTCCCGCACGCAGGA 61.449 66.667 0.00 0.00 0.00 3.86
328 329 3.001902 TTCTACTCCCGCACGCAGG 62.002 63.158 0.00 0.00 0.00 4.85
329 330 1.805945 GTTCTACTCCCGCACGCAG 60.806 63.158 0.00 0.00 0.00 5.18
330 331 2.260434 GTTCTACTCCCGCACGCA 59.740 61.111 0.00 0.00 0.00 5.24
331 332 2.879462 CGTTCTACTCCCGCACGC 60.879 66.667 0.00 0.00 0.00 5.34
332 333 2.879462 GCGTTCTACTCCCGCACG 60.879 66.667 0.00 0.00 46.26 5.34
335 336 2.278013 CTCGCGTTCTACTCCCGC 60.278 66.667 5.77 0.00 43.74 6.13
336 337 0.729116 TAACTCGCGTTCTACTCCCG 59.271 55.000 5.77 0.00 34.59 5.14
337 338 1.065251 CCTAACTCGCGTTCTACTCCC 59.935 57.143 5.77 0.00 34.59 4.30
338 339 2.012673 TCCTAACTCGCGTTCTACTCC 58.987 52.381 5.77 0.00 34.59 3.85
339 340 3.065095 ACATCCTAACTCGCGTTCTACTC 59.935 47.826 5.77 0.00 34.59 2.59
340 341 3.015327 ACATCCTAACTCGCGTTCTACT 58.985 45.455 5.77 0.00 34.59 2.57
341 342 3.106672 CACATCCTAACTCGCGTTCTAC 58.893 50.000 5.77 0.00 34.59 2.59
342 343 2.479049 GCACATCCTAACTCGCGTTCTA 60.479 50.000 5.77 0.00 34.59 2.10
343 344 1.736032 GCACATCCTAACTCGCGTTCT 60.736 52.381 5.77 0.00 34.59 3.01
344 345 0.645868 GCACATCCTAACTCGCGTTC 59.354 55.000 5.77 0.00 34.59 3.95
345 346 0.246635 AGCACATCCTAACTCGCGTT 59.753 50.000 5.77 0.00 37.15 4.84
346 347 0.458543 CAGCACATCCTAACTCGCGT 60.459 55.000 5.77 0.00 0.00 6.01
347 348 1.756375 GCAGCACATCCTAACTCGCG 61.756 60.000 0.00 0.00 0.00 5.87
348 349 0.460987 AGCAGCACATCCTAACTCGC 60.461 55.000 0.00 0.00 0.00 5.03
349 350 1.565305 GAGCAGCACATCCTAACTCG 58.435 55.000 0.00 0.00 0.00 4.18
350 351 1.135139 TCGAGCAGCACATCCTAACTC 59.865 52.381 0.00 0.00 0.00 3.01
351 352 1.135915 CTCGAGCAGCACATCCTAACT 59.864 52.381 0.00 0.00 0.00 2.24
352 353 1.135139 TCTCGAGCAGCACATCCTAAC 59.865 52.381 7.81 0.00 0.00 2.34
353 354 1.474330 TCTCGAGCAGCACATCCTAA 58.526 50.000 7.81 0.00 0.00 2.69
354 355 1.406898 CTTCTCGAGCAGCACATCCTA 59.593 52.381 7.81 0.00 0.00 2.94
355 356 0.175302 CTTCTCGAGCAGCACATCCT 59.825 55.000 7.81 0.00 0.00 3.24
356 357 0.174389 TCTTCTCGAGCAGCACATCC 59.826 55.000 7.81 0.00 0.00 3.51
357 358 1.658095 GTTCTTCTCGAGCAGCACATC 59.342 52.381 7.81 0.00 0.00 3.06
358 359 1.719600 GTTCTTCTCGAGCAGCACAT 58.280 50.000 7.81 0.00 0.00 3.21
359 360 0.664466 CGTTCTTCTCGAGCAGCACA 60.664 55.000 14.16 0.00 0.00 4.57
360 361 1.347817 CCGTTCTTCTCGAGCAGCAC 61.348 60.000 7.81 6.14 0.00 4.40
361 362 1.080501 CCGTTCTTCTCGAGCAGCA 60.081 57.895 7.81 0.00 0.00 4.41
362 363 0.179124 ATCCGTTCTTCTCGAGCAGC 60.179 55.000 7.81 0.00 0.00 5.25
363 364 1.833860 GATCCGTTCTTCTCGAGCAG 58.166 55.000 7.81 6.66 0.00 4.24
364 365 0.098905 CGATCCGTTCTTCTCGAGCA 59.901 55.000 7.81 0.00 33.07 4.26
365 366 0.377554 TCGATCCGTTCTTCTCGAGC 59.622 55.000 7.81 0.00 35.41 5.03
366 367 2.442424 GTTCGATCCGTTCTTCTCGAG 58.558 52.381 5.93 5.93 40.75 4.04
367 368 1.201998 CGTTCGATCCGTTCTTCTCGA 60.202 52.381 0.00 0.00 38.28 4.04
368 369 1.181001 CGTTCGATCCGTTCTTCTCG 58.819 55.000 0.00 0.00 0.00 4.04
369 370 0.915227 GCGTTCGATCCGTTCTTCTC 59.085 55.000 6.83 0.00 0.00 2.87
370 371 0.458025 GGCGTTCGATCCGTTCTTCT 60.458 55.000 6.83 0.00 0.00 2.85
371 372 0.458025 AGGCGTTCGATCCGTTCTTC 60.458 55.000 6.83 0.00 0.00 2.87
372 373 0.736325 CAGGCGTTCGATCCGTTCTT 60.736 55.000 6.83 0.00 0.00 2.52
373 374 1.153823 CAGGCGTTCGATCCGTTCT 60.154 57.895 6.83 3.12 0.00 3.01
374 375 1.012486 AACAGGCGTTCGATCCGTTC 61.012 55.000 6.83 1.20 0.00 3.95
375 376 1.005394 AACAGGCGTTCGATCCGTT 60.005 52.632 6.83 5.52 0.00 4.44
376 377 1.736645 CAACAGGCGTTCGATCCGT 60.737 57.895 6.83 0.56 31.13 4.69
377 378 0.806102 ATCAACAGGCGTTCGATCCG 60.806 55.000 0.00 1.01 31.13 4.18
378 379 0.652592 CATCAACAGGCGTTCGATCC 59.347 55.000 0.00 0.00 31.13 3.36
379 380 0.652592 CCATCAACAGGCGTTCGATC 59.347 55.000 0.00 0.00 31.13 3.69
380 381 1.369091 GCCATCAACAGGCGTTCGAT 61.369 55.000 0.00 0.00 43.15 3.59
381 382 2.032634 GCCATCAACAGGCGTTCGA 61.033 57.895 0.00 0.00 43.15 3.71
382 383 2.480555 GCCATCAACAGGCGTTCG 59.519 61.111 0.00 0.00 43.15 3.95
388 389 1.431488 CGGATCGTGCCATCAACAGG 61.431 60.000 0.00 0.00 0.00 4.00
389 390 0.460109 TCGGATCGTGCCATCAACAG 60.460 55.000 0.00 0.00 0.00 3.16
390 391 0.739462 GTCGGATCGTGCCATCAACA 60.739 55.000 0.00 0.00 0.00 3.33
391 392 1.752501 CGTCGGATCGTGCCATCAAC 61.753 60.000 0.00 0.00 0.00 3.18
392 393 1.518352 CGTCGGATCGTGCCATCAA 60.518 57.895 0.00 0.00 0.00 2.57
393 394 2.104132 CGTCGGATCGTGCCATCA 59.896 61.111 0.00 0.00 0.00 3.07
394 395 2.658593 CCGTCGGATCGTGCCATC 60.659 66.667 4.91 0.00 0.00 3.51
395 396 4.891727 GCCGTCGGATCGTGCCAT 62.892 66.667 17.49 0.00 0.00 4.40
397 398 3.896133 TAGCCGTCGGATCGTGCC 61.896 66.667 17.49 0.00 0.00 5.01
398 399 2.654404 GTAGCCGTCGGATCGTGC 60.654 66.667 17.49 0.00 0.00 5.34
399 400 2.352001 CGTAGCCGTCGGATCGTG 60.352 66.667 17.49 0.00 0.00 4.35
400 401 2.512286 TCGTAGCCGTCGGATCGT 60.512 61.111 17.49 0.00 35.01 3.73
401 402 2.248724 CTCGTAGCCGTCGGATCG 59.751 66.667 17.49 14.68 35.01 3.69
402 403 2.638154 CCTCGTAGCCGTCGGATC 59.362 66.667 17.49 1.98 35.01 3.36
403 404 2.905880 CCCTCGTAGCCGTCGGAT 60.906 66.667 17.49 12.48 35.01 4.18
409 410 2.561549 TTAAACCGCCCTCGTAGCCG 62.562 60.000 0.00 0.00 0.00 5.52
410 411 0.391528 TTTAAACCGCCCTCGTAGCC 60.392 55.000 0.00 0.00 0.00 3.93
411 412 1.129251 GTTTTAAACCGCCCTCGTAGC 59.871 52.381 0.00 0.00 0.00 3.58
412 413 2.414138 CAGTTTTAAACCGCCCTCGTAG 59.586 50.000 4.01 0.00 0.00 3.51
413 414 2.415776 CAGTTTTAAACCGCCCTCGTA 58.584 47.619 4.01 0.00 0.00 3.43
414 415 1.232119 CAGTTTTAAACCGCCCTCGT 58.768 50.000 4.01 0.00 0.00 4.18
415 416 0.519961 CCAGTTTTAAACCGCCCTCG 59.480 55.000 4.01 0.00 0.00 4.63
416 417 0.242825 GCCAGTTTTAAACCGCCCTC 59.757 55.000 4.01 0.00 0.00 4.30
417 418 0.178973 AGCCAGTTTTAAACCGCCCT 60.179 50.000 12.07 0.00 0.00 5.19
418 419 0.242825 GAGCCAGTTTTAAACCGCCC 59.757 55.000 12.07 0.00 0.00 6.13
419 420 0.955905 TGAGCCAGTTTTAAACCGCC 59.044 50.000 12.07 6.51 0.00 6.13
420 421 2.785713 TTGAGCCAGTTTTAAACCGC 57.214 45.000 4.01 6.79 0.00 5.68
421 422 7.273381 CAGATAATTTGAGCCAGTTTTAAACCG 59.727 37.037 4.01 0.00 0.00 4.44
422 423 7.545615 CCAGATAATTTGAGCCAGTTTTAAACC 59.454 37.037 4.01 0.00 0.00 3.27
423 424 8.088365 ACCAGATAATTTGAGCCAGTTTTAAAC 58.912 33.333 0.00 0.00 0.00 2.01
424 425 8.189119 ACCAGATAATTTGAGCCAGTTTTAAA 57.811 30.769 0.00 0.00 0.00 1.52
425 426 7.775053 ACCAGATAATTTGAGCCAGTTTTAA 57.225 32.000 0.00 0.00 0.00 1.52
426 427 7.450014 TCAACCAGATAATTTGAGCCAGTTTTA 59.550 33.333 0.00 0.00 0.00 1.52
427 428 6.267471 TCAACCAGATAATTTGAGCCAGTTTT 59.733 34.615 0.00 0.00 0.00 2.43
428 429 5.774690 TCAACCAGATAATTTGAGCCAGTTT 59.225 36.000 0.00 0.00 0.00 2.66
429 430 5.324409 TCAACCAGATAATTTGAGCCAGTT 58.676 37.500 0.00 0.00 0.00 3.16
430 431 4.922206 TCAACCAGATAATTTGAGCCAGT 58.078 39.130 0.00 0.00 0.00 4.00
431 432 6.461110 AATCAACCAGATAATTTGAGCCAG 57.539 37.500 0.00 0.00 35.39 4.85
432 433 6.211184 ACAAATCAACCAGATAATTTGAGCCA 59.789 34.615 12.21 0.00 40.07 4.75
433 434 6.633856 ACAAATCAACCAGATAATTTGAGCC 58.366 36.000 12.21 0.00 40.07 4.70
434 435 7.433425 GCTACAAATCAACCAGATAATTTGAGC 59.567 37.037 12.21 11.80 40.07 4.26
435 436 7.641411 CGCTACAAATCAACCAGATAATTTGAG 59.359 37.037 12.21 7.36 40.07 3.02
436 437 7.471721 CGCTACAAATCAACCAGATAATTTGA 58.528 34.615 12.21 0.00 40.07 2.69
437 438 6.197096 GCGCTACAAATCAACCAGATAATTTG 59.803 38.462 0.00 5.40 42.20 2.32
438 439 6.095440 AGCGCTACAAATCAACCAGATAATTT 59.905 34.615 8.99 0.00 35.39 1.82
439 440 5.590259 AGCGCTACAAATCAACCAGATAATT 59.410 36.000 8.99 0.00 35.39 1.40
440 441 5.126067 AGCGCTACAAATCAACCAGATAAT 58.874 37.500 8.99 0.00 35.39 1.28
441 442 4.513442 AGCGCTACAAATCAACCAGATAA 58.487 39.130 8.99 0.00 35.39 1.75
442 443 4.119862 GAGCGCTACAAATCAACCAGATA 58.880 43.478 11.50 0.00 35.39 1.98
443 444 2.939103 GAGCGCTACAAATCAACCAGAT 59.061 45.455 11.50 0.00 39.09 2.90
444 445 2.346803 GAGCGCTACAAATCAACCAGA 58.653 47.619 11.50 0.00 0.00 3.86
445 446 1.061131 CGAGCGCTACAAATCAACCAG 59.939 52.381 11.50 0.00 0.00 4.00
446 447 1.075542 CGAGCGCTACAAATCAACCA 58.924 50.000 11.50 0.00 0.00 3.67
447 448 0.247695 GCGAGCGCTACAAATCAACC 60.248 55.000 11.50 0.00 38.26 3.77
448 449 0.247695 GGCGAGCGCTACAAATCAAC 60.248 55.000 11.50 0.00 41.60 3.18
449 450 0.672091 TGGCGAGCGCTACAAATCAA 60.672 50.000 11.50 0.00 41.60 2.57
450 451 0.672091 TTGGCGAGCGCTACAAATCA 60.672 50.000 11.50 0.06 41.60 2.57
451 452 0.657840 ATTGGCGAGCGCTACAAATC 59.342 50.000 20.73 4.13 41.60 2.17
452 453 1.948104 TATTGGCGAGCGCTACAAAT 58.052 45.000 20.73 17.86 41.60 2.32
453 454 1.728068 TTATTGGCGAGCGCTACAAA 58.272 45.000 20.73 12.72 41.60 2.83
454 455 1.948104 ATTATTGGCGAGCGCTACAA 58.052 45.000 11.50 16.92 41.60 2.41
455 456 2.804697 TATTATTGGCGAGCGCTACA 57.195 45.000 11.50 7.47 41.60 2.74
456 457 4.663636 ATTTATTATTGGCGAGCGCTAC 57.336 40.909 11.50 5.43 41.60 3.58
457 458 5.475719 AGTATTTATTATTGGCGAGCGCTA 58.524 37.500 11.50 5.74 41.60 4.26
458 459 4.315803 AGTATTTATTATTGGCGAGCGCT 58.684 39.130 11.27 11.27 41.60 5.92
459 460 4.389077 AGAGTATTTATTATTGGCGAGCGC 59.611 41.667 6.27 6.27 41.06 5.92
460 461 6.467723 AAGAGTATTTATTATTGGCGAGCG 57.532 37.500 0.00 0.00 0.00 5.03
461 462 7.591426 CCAAAAGAGTATTTATTATTGGCGAGC 59.409 37.037 0.00 0.00 30.79 5.03
462 463 8.621286 ACCAAAAGAGTATTTATTATTGGCGAG 58.379 33.333 0.00 0.00 39.68 5.03
463 464 8.514330 ACCAAAAGAGTATTTATTATTGGCGA 57.486 30.769 0.00 0.00 39.68 5.54
464 465 9.659830 GTACCAAAAGAGTATTTATTATTGGCG 57.340 33.333 0.00 0.00 39.68 5.69
516 517 3.515901 ACAAAAACCTAAGTGGCCAAACA 59.484 39.130 7.24 0.00 40.22 2.83
526 527 8.678199 AGAGAAAGAACAAGACAAAAACCTAAG 58.322 33.333 0.00 0.00 0.00 2.18
541 542 6.227298 AGACAAGAGACAAGAGAAAGAACA 57.773 37.500 0.00 0.00 0.00 3.18
557 558 2.502130 TGTGGTGTGGTACAAGACAAGA 59.498 45.455 0.00 0.00 44.16 3.02
558 559 2.612212 GTGTGGTGTGGTACAAGACAAG 59.388 50.000 0.00 0.00 44.16 3.16
559 560 2.634600 GTGTGGTGTGGTACAAGACAA 58.365 47.619 0.00 0.00 44.16 3.18
560 561 1.134340 GGTGTGGTGTGGTACAAGACA 60.134 52.381 0.00 0.00 44.16 3.41
561 562 1.589803 GGTGTGGTGTGGTACAAGAC 58.410 55.000 0.00 0.00 44.16 3.01
562 563 0.105224 CGGTGTGGTGTGGTACAAGA 59.895 55.000 0.00 0.00 44.16 3.02
563 564 0.882927 CCGGTGTGGTGTGGTACAAG 60.883 60.000 0.00 0.00 44.16 3.16
581 582 0.179034 CAGAGATTAGCCACCTGCCC 60.179 60.000 0.00 0.00 42.71 5.36
585 586 2.053244 CATCCCAGAGATTAGCCACCT 58.947 52.381 0.00 0.00 30.59 4.00
646 647 9.933723 CTATGAATGAGGAAAAGAAAACCAATT 57.066 29.630 0.00 0.00 0.00 2.32
665 666 9.492730 AATGTAGGGAAAAACCAATCTATGAAT 57.507 29.630 0.00 0.00 41.20 2.57
668 669 9.942850 AAAAATGTAGGGAAAAACCAATCTATG 57.057 29.630 0.00 0.00 41.20 2.23
876 882 8.500753 TGAAAGCCTACGTTAACAATTATGAT 57.499 30.769 6.39 0.00 0.00 2.45
918 2408 2.648593 TGCTGCTGCATGTCAATGT 58.351 47.368 14.93 0.00 45.31 2.71
1279 2772 3.174987 CTGGTGGTGGTGGTGGGA 61.175 66.667 0.00 0.00 0.00 4.37
1535 3031 3.246112 CAGGGAACACCGGTCCCA 61.246 66.667 27.09 0.00 45.90 4.37
1626 3122 1.600636 CCGCTTGAGAACCTTGGCA 60.601 57.895 0.00 0.00 0.00 4.92
1698 3194 0.890996 CTTGGGCCAACCTCTCACAC 60.891 60.000 16.66 0.00 41.11 3.82
2064 3560 3.265791 CACTACCAGATCAGGTTTCAGC 58.734 50.000 15.75 0.00 43.08 4.26
2160 3656 3.298958 GGATGACAGCCGTCCTCA 58.701 61.111 7.53 0.00 45.58 3.86
2234 3730 1.073603 TCATCACAACTGTGGCATCCA 59.926 47.619 9.87 0.00 45.65 3.41
2453 3949 5.760253 AGTGTCATCTCTTTGAATGTTTCGT 59.240 36.000 0.00 0.00 0.00 3.85
2454 3950 6.233430 AGTGTCATCTCTTTGAATGTTTCG 57.767 37.500 0.00 0.00 0.00 3.46
2455 3951 9.950680 TTTAAGTGTCATCTCTTTGAATGTTTC 57.049 29.630 0.00 0.00 0.00 2.78
2456 3952 9.956720 CTTTAAGTGTCATCTCTTTGAATGTTT 57.043 29.630 0.00 0.00 0.00 2.83
2457 3953 8.571336 CCTTTAAGTGTCATCTCTTTGAATGTT 58.429 33.333 0.00 0.00 0.00 2.71
2490 3991 9.969001 AATATGTTGTAGGTAATAGTGTTTGGT 57.031 29.630 0.00 0.00 0.00 3.67
2515 4016 6.475504 TGGACTTGCAGAAATTCTCTATCAA 58.524 36.000 0.00 0.00 31.12 2.57
2619 4120 7.869429 CCATTCCTACAAAATCCATGAATAAGC 59.131 37.037 0.00 0.00 0.00 3.09
2960 4461 2.271800 CCACAGCTTCCGTAATCTGAC 58.728 52.381 0.00 0.00 33.86 3.51
3193 4694 3.189287 AGTGAATGACTGATTTTGCGGAC 59.811 43.478 0.00 0.00 31.75 4.79
3194 4695 3.411446 AGTGAATGACTGATTTTGCGGA 58.589 40.909 0.00 0.00 31.75 5.54
3195 4696 3.189080 TGAGTGAATGACTGATTTTGCGG 59.811 43.478 0.00 0.00 33.83 5.69
3196 4697 4.408993 TGAGTGAATGACTGATTTTGCG 57.591 40.909 0.00 0.00 33.83 4.85
3201 4710 4.717877 TGTGGTTGAGTGAATGACTGATT 58.282 39.130 0.00 0.00 33.83 2.57
3429 4941 6.560253 ACTTTTAACGTGAAGCAGATTGAT 57.440 33.333 0.00 0.00 0.00 2.57
3540 6985 5.835819 CCATCTTCTACCTCAGAGATGGTAA 59.164 44.000 18.51 0.00 44.26 2.85
3597 7092 4.806247 GCACTTACTTCTACTAGCATGGTG 59.194 45.833 7.89 0.11 0.00 4.17
3625 7120 3.549827 CGGCAAATAGACAAAGCACACAA 60.550 43.478 0.00 0.00 0.00 3.33
3630 7125 2.499197 TGTCGGCAAATAGACAAAGCA 58.501 42.857 0.00 0.00 43.47 3.91
3638 7133 3.498397 ACACAGTTCTTGTCGGCAAATAG 59.502 43.478 3.10 0.00 38.16 1.73
3824 7320 4.466828 CAATAACAGTTGAAGTTGGCTCG 58.533 43.478 0.00 0.00 0.00 5.03
3830 7326 7.283329 AGAGAAGTCCAATAACAGTTGAAGTT 58.717 34.615 0.00 0.00 0.00 2.66
3871 7367 8.006564 AGCTGGAAATTAAATATGAATCAGGGA 58.993 33.333 0.00 0.00 0.00 4.20
3932 7428 6.918892 AGAAATTTTTGTACCTTGGTTTGC 57.081 33.333 0.00 0.00 0.00 3.68
4135 7631 0.670546 CTGTCCCGCTGTTGATTCGT 60.671 55.000 0.00 0.00 0.00 3.85
4148 7644 1.473434 CGAGGAAATAGGCACTGTCCC 60.473 57.143 0.00 0.00 41.52 4.46
4278 7774 0.664166 GACATTGCACCAAACCTGCG 60.664 55.000 0.00 0.00 37.46 5.18
4459 7955 1.209504 TGGTAGCAAGTAGATGGGCAC 59.790 52.381 0.00 0.00 0.00 5.01
4621 8117 4.954202 TCAGTTGGTCCAGTCGTAGAATAT 59.046 41.667 0.00 0.00 39.69 1.28
4689 8185 8.512138 ACGTCTAAATAAAGAAATGGAAACCAG 58.488 33.333 0.00 0.00 36.75 4.00
4717 8215 4.142730 GCAACCTGCTGATCAGTTTTAGAG 60.143 45.833 23.38 9.96 40.96 2.43
4782 8280 6.380190 AGTATTCGCTTTCCTGTATATCGTC 58.620 40.000 0.00 0.00 0.00 4.20
4883 8381 3.732048 ACAATACAACAAGGTAGGGGG 57.268 47.619 0.00 0.00 0.00 5.40
4923 8638 0.250858 AGCAACTGCACAGCCATACA 60.251 50.000 4.22 0.00 45.16 2.29
4931 8646 5.473162 ACATACAATAAGAAGCAACTGCACA 59.527 36.000 4.22 0.00 45.16 4.57
5090 8805 2.762745 GTGGCAGGAAAACGAGTTAGA 58.237 47.619 0.00 0.00 0.00 2.10
5223 8943 5.484998 ACAATGTGCCCCAGAAAAATAGAAT 59.515 36.000 0.00 0.00 0.00 2.40
5457 9181 4.866508 AACGACAAACAGATGAGAGGTA 57.133 40.909 0.00 0.00 0.00 3.08
5528 9252 5.269505 TGATTCTAGCTAGCAGAGGTTTC 57.730 43.478 18.83 11.13 37.09 2.78
5657 9385 2.456577 ACAGTTAATTGGCATGTCCCC 58.543 47.619 2.81 0.00 0.00 4.81


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.