Multiple sequence alignment - TraesCS2B01G286500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G286500 chr2B 100.000 8195 0 0 1 8195 394940811 394949005 0.000000e+00 15134.0
1 TraesCS2B01G286500 chr2B 81.067 993 152 22 4457 5414 531163329 531164320 0.000000e+00 760.0
2 TraesCS2B01G286500 chr2B 80.816 980 151 24 4470 5414 531160799 531159822 0.000000e+00 734.0
3 TraesCS2B01G286500 chr2B 90.189 265 25 1 2856 3119 450718496 450718232 2.190000e-90 344.0
4 TraesCS2B01G286500 chr2D 97.149 3402 73 16 4804 8195 325754099 325757486 0.000000e+00 5723.0
5 TraesCS2B01G286500 chr2D 98.282 1397 20 3 1467 2859 325750865 325752261 0.000000e+00 2444.0
6 TraesCS2B01G286500 chr2D 96.774 1085 32 2 3118 4201 325752260 325753342 0.000000e+00 1807.0
7 TraesCS2B01G286500 chr2D 87.927 878 71 11 1 870 325726257 325727107 0.000000e+00 1002.0
8 TraesCS2B01G286500 chr2D 94.249 626 15 5 4199 4805 325753394 325754017 0.000000e+00 937.0
9 TraesCS2B01G286500 chr2D 91.848 552 25 9 933 1467 325744656 325745204 0.000000e+00 752.0
10 TraesCS2B01G286500 chr2D 86.237 465 49 11 5462 5923 325754553 325754101 2.660000e-134 490.0
11 TraesCS2B01G286500 chr2A 95.713 3266 86 19 4964 8195 392455618 392452373 0.000000e+00 5206.0
12 TraesCS2B01G286500 chr2A 95.389 2082 52 16 801 2859 392459018 392456958 0.000000e+00 3273.0
13 TraesCS2B01G286500 chr2A 88.340 789 74 5 1 780 392461465 392460686 0.000000e+00 931.0
14 TraesCS2B01G286500 chr2A 97.183 355 9 1 3225 3579 392456760 392456407 4.230000e-167 599.0
15 TraesCS2B01G286500 chr2A 95.679 324 13 1 4342 4665 392456385 392456063 3.390000e-143 520.0
16 TraesCS2B01G286500 chr2A 96.899 129 2 2 3118 3245 392456959 392456832 1.790000e-51 215.0
17 TraesCS2B01G286500 chr7D 80.514 1011 150 25 4450 5414 475721656 475720647 0.000000e+00 732.0
18 TraesCS2B01G286500 chr7D 93.156 263 16 2 2858 3119 111748748 111749009 1.290000e-102 385.0
19 TraesCS2B01G286500 chr4A 81.243 949 138 24 4503 5414 536785467 536784522 0.000000e+00 730.0
20 TraesCS2B01G286500 chr4A 80.359 1003 151 24 4457 5414 629516382 629515381 0.000000e+00 719.0
21 TraesCS2B01G286500 chr4A 80.887 947 141 25 4503 5414 113316057 113315116 0.000000e+00 710.0
22 TraesCS2B01G286500 chr1D 80.558 1003 149 24 4457 5414 362327730 362328731 0.000000e+00 730.0
23 TraesCS2B01G286500 chr1D 92.029 276 20 2 2845 3119 377022771 377023045 3.590000e-103 387.0
24 TraesCS2B01G286500 chr1D 90.876 274 23 2 2851 3122 11789888 11790161 4.670000e-97 366.0
25 TraesCS2B01G286500 chr5B 79.781 638 100 14 5467 6083 655444580 655445209 3.510000e-118 436.0
26 TraesCS2B01G286500 chr5B 80.193 207 30 6 4505 4700 439988418 439988212 2.380000e-30 145.0
27 TraesCS2B01G286500 chr5B 83.146 89 13 2 3343 3429 430670493 430670405 6.820000e-11 80.5
28 TraesCS2B01G286500 chr7A 91.450 269 22 1 2858 3125 176272068 176271800 1.300000e-97 368.0
29 TraesCS2B01G286500 chr6A 90.494 263 24 1 2858 3119 337753883 337753621 6.090000e-91 346.0
30 TraesCS2B01G286500 chr4B 89.963 269 26 1 2855 3122 398126203 398126471 6.090000e-91 346.0
31 TraesCS2B01G286500 chr4B 89.963 269 26 1 2855 3122 398161112 398161380 6.090000e-91 346.0
32 TraesCS2B01G286500 chr4B 89.963 269 26 1 2855 3122 398195874 398196142 6.090000e-91 346.0
33 TraesCS2B01G286500 chr4B 92.453 53 4 0 5414 5466 101883947 101883895 8.820000e-10 76.8
34 TraesCS2B01G286500 chr6D 80.095 422 66 6 5671 6077 245259015 245259433 1.730000e-76 298.0
35 TraesCS2B01G286500 chr6D 81.159 207 27 7 4505 4700 269968498 269968293 1.100000e-33 156.0
36 TraesCS2B01G286500 chr6D 73.988 173 34 6 4507 4669 245260444 245260273 8.880000e-05 60.2
37 TraesCS2B01G286500 chr4D 81.463 205 29 6 4505 4700 43264271 43264067 8.510000e-35 159.0
38 TraesCS2B01G286500 chr5D 77.395 261 42 10 4454 4700 446513589 446513332 1.110000e-28 139.0
39 TraesCS2B01G286500 chr7B 77.689 251 34 15 4457 4691 282296160 282296404 5.160000e-27 134.0
40 TraesCS2B01G286500 chr3D 88.679 53 4 2 3343 3393 165758432 165758380 6.870000e-06 63.9
41 TraesCS2B01G286500 chr3D 100.000 28 0 0 4457 4484 347486772 347486799 1.500000e-02 52.8
42 TraesCS2B01G286500 chr3A 88.679 53 4 2 3343 3393 203661369 203661317 6.870000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G286500 chr2B 394940811 394949005 8194 False 15134.000000 15134 100.000000 1 8195 1 chr2B.!!$F1 8194
1 TraesCS2B01G286500 chr2B 531163329 531164320 991 False 760.000000 760 81.067000 4457 5414 1 chr2B.!!$F2 957
2 TraesCS2B01G286500 chr2B 531159822 531160799 977 True 734.000000 734 80.816000 4470 5414 1 chr2B.!!$R2 944
3 TraesCS2B01G286500 chr2D 325750865 325757486 6621 False 2727.750000 5723 96.613500 1467 8195 4 chr2D.!!$F3 6728
4 TraesCS2B01G286500 chr2D 325726257 325727107 850 False 1002.000000 1002 87.927000 1 870 1 chr2D.!!$F1 869
5 TraesCS2B01G286500 chr2D 325744656 325745204 548 False 752.000000 752 91.848000 933 1467 1 chr2D.!!$F2 534
6 TraesCS2B01G286500 chr2A 392452373 392461465 9092 True 1790.666667 5206 94.867167 1 8195 6 chr2A.!!$R1 8194
7 TraesCS2B01G286500 chr7D 475720647 475721656 1009 True 732.000000 732 80.514000 4450 5414 1 chr7D.!!$R1 964
8 TraesCS2B01G286500 chr4A 536784522 536785467 945 True 730.000000 730 81.243000 4503 5414 1 chr4A.!!$R2 911
9 TraesCS2B01G286500 chr4A 629515381 629516382 1001 True 719.000000 719 80.359000 4457 5414 1 chr4A.!!$R3 957
10 TraesCS2B01G286500 chr4A 113315116 113316057 941 True 710.000000 710 80.887000 4503 5414 1 chr4A.!!$R1 911
11 TraesCS2B01G286500 chr1D 362327730 362328731 1001 False 730.000000 730 80.558000 4457 5414 1 chr1D.!!$F2 957
12 TraesCS2B01G286500 chr5B 655444580 655445209 629 False 436.000000 436 79.781000 5467 6083 1 chr5B.!!$F1 616

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
513 522 0.036388 GGCAACGTCCAGGAGATTCA 60.036 55.000 0.00 0.0 0.00 2.57 F
810 2467 0.323725 ATGCCCGGCTTTCTCACAAT 60.324 50.000 11.61 0.0 0.00 2.71 F
889 2549 0.672711 GTTCCCCGTCTAACCAGCAC 60.673 60.000 0.00 0.0 0.00 4.40 F
935 2595 0.754472 CATTGCTGGCTTAATGGGGG 59.246 55.000 0.00 0.0 32.13 5.40 F
1643 3323 1.103803 TGTTGCAAAAGTACGGCCAA 58.896 45.000 0.00 0.0 0.00 4.52 F
2875 4566 0.107312 CTACTCCCTCCGTCCTCGAA 60.107 60.000 0.00 0.0 39.71 3.71 F
3117 4808 0.033796 TATTCGTGGACGGAGGGAGT 60.034 55.000 0.00 0.0 40.29 3.85 F
3538 5323 1.155889 CATAAGCACACAGAACGCCA 58.844 50.000 0.00 0.0 0.00 5.69 F
4136 5921 0.037590 ACCGCTCATGCCAAAGGTTA 59.962 50.000 0.00 0.0 35.36 2.85 F
4208 5993 0.469892 AGCCTGGAAACCAACAAGGG 60.470 55.000 0.00 0.0 43.89 3.95 F
4424 6263 0.670546 CAACAGATCAACCCTCGCGT 60.671 55.000 5.77 0.0 0.00 6.01 F
4443 6282 2.450502 ACCAGCCACAAGGGACCT 60.451 61.111 0.00 0.0 40.01 3.85 F
6342 8512 0.605589 GCGCTAGGGTTCCAACTTGT 60.606 55.000 8.77 0.0 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1637 3317 0.378257 CACAAGGATCGATTTGGCCG 59.622 55.000 13.06 0.1 0.00 6.13 R
2750 4441 2.226962 ACAGGCAGCATTCCATTTCT 57.773 45.000 0.00 0.0 0.00 2.52 R
2860 4551 1.064166 ACTTATTCGAGGACGGAGGGA 60.064 52.381 0.00 0.0 40.21 4.20 R
2861 4552 1.067212 CACTTATTCGAGGACGGAGGG 59.933 57.143 0.00 0.0 40.21 4.30 R
3098 4789 0.033796 ACTCCCTCCGTCCACGAATA 60.034 55.000 0.00 0.0 43.02 1.75 R
3929 5714 0.107703 TGAATCGGACCATGCCAGTC 60.108 55.000 0.00 0.0 0.00 3.51 R
3942 5727 0.371645 GACTTTGCCGAGCTGAATCG 59.628 55.000 0.00 0.0 42.36 3.34 R
5184 7326 0.684805 CCGTGCTCCTAGGAAGAGGT 60.685 60.000 13.77 0.0 37.88 3.85 R
6183 8345 2.339769 GGGGCCCTTAGTAGACATGAT 58.660 52.381 24.38 0.0 0.00 2.45 R
6226 8389 0.250513 AGCCGGTCCTGAGATTTCAC 59.749 55.000 1.90 0.0 0.00 3.18 R
6254 8417 2.456119 GCGCGTCTTGCTGCAGTAT 61.456 57.895 16.64 0.0 43.27 2.12 R
6401 8571 5.659525 AGCACACTATTACAGTATGGGTGTA 59.340 40.000 10.59 0.0 43.62 2.90 R
7439 9613 0.028374 AACCGAAACCGAAAGCAACG 59.972 50.000 0.00 0.0 0.00 4.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.282674 CCATGCCTGCACACCTGT 60.283 61.111 0.00 0.00 0.00 4.00
42 43 1.589716 GCTTTCCATTGCCTGCTCGT 61.590 55.000 0.00 0.00 0.00 4.18
174 175 2.420722 ACGACGAACAACAACACCAATT 59.579 40.909 0.00 0.00 0.00 2.32
244 247 1.339055 TGTAGGTGCTGAACATGGAGC 60.339 52.381 0.00 1.99 35.65 4.70
251 254 2.279741 GCTGAACATGGAGCATACGAA 58.720 47.619 8.35 0.00 35.15 3.85
278 281 3.821748 TGTAAGCACAATTGTACACCCA 58.178 40.909 11.53 3.21 0.00 4.51
293 296 7.190335 TGTACACCCATGTAAGCTATACTTT 57.810 36.000 0.00 0.00 42.99 2.66
337 346 4.424061 TCACGGATTGAAATCAAGCAAG 57.576 40.909 12.82 8.63 43.45 4.01
400 409 2.193536 GGTTCCAAGCAGCCGTTGT 61.194 57.895 0.00 0.00 0.00 3.32
448 457 2.037053 CAGCGTCCAGGAGATCGAT 58.963 57.895 0.00 0.00 0.00 3.59
450 459 0.466372 AGCGTCCAGGAGATCGATGA 60.466 55.000 0.54 0.00 0.00 2.92
476 485 0.322187 TGTCCAGGAGATCGACGTCA 60.322 55.000 17.16 3.13 0.00 4.35
498 507 1.518352 CCGATCGACATCACGGCAA 60.518 57.895 18.66 0.00 38.98 4.52
513 522 0.036388 GGCAACGTCCAGGAGATTCA 60.036 55.000 0.00 0.00 0.00 2.57
519 528 1.067821 CGTCCAGGAGATTCAGCCTAC 59.932 57.143 0.00 0.00 32.03 3.18
549 558 1.599419 GCAACTCGCGGTGTTTTTGAT 60.599 47.619 6.13 0.00 0.00 2.57
551 560 3.850374 GCAACTCGCGGTGTTTTTGATTA 60.850 43.478 6.13 0.00 0.00 1.75
570 579 1.616620 AATTGCGCGCATGTTAAGTG 58.383 45.000 36.83 0.00 0.00 3.16
577 586 2.094258 CGCGCATGTTAAGTGAGAACAT 59.906 45.455 8.75 0.00 46.07 2.71
598 607 1.411394 GCAAAGTACTGCGTACACGA 58.589 50.000 17.11 0.00 41.03 4.35
599 608 1.788308 GCAAAGTACTGCGTACACGAA 59.212 47.619 17.11 0.00 41.03 3.85
615 624 0.528924 CGAAGTGACCGGGTACATGA 59.471 55.000 6.32 0.00 0.00 3.07
645 654 0.329596 GGGCAGTCTGGTCCTTTCAT 59.670 55.000 1.14 0.00 0.00 2.57
672 682 7.382759 GTGCGTGTAAATGGAAAAATAAAAGGA 59.617 33.333 0.00 0.00 0.00 3.36
690 700 5.914898 AAGGAAAATCGATAAAAGGTGGG 57.085 39.130 0.00 0.00 0.00 4.61
712 722 4.892934 GGAAATGGCATGGTAATCAAGGTA 59.107 41.667 0.00 0.00 0.00 3.08
721 731 3.142174 GGTAATCAAGGTAGGCATGAGC 58.858 50.000 0.00 0.00 41.10 4.26
736 746 3.119388 GCATGAGCTGAGTGGCAATTTTA 60.119 43.478 0.00 0.00 37.91 1.52
737 747 4.441079 GCATGAGCTGAGTGGCAATTTTAT 60.441 41.667 0.00 0.00 37.91 1.40
766 776 4.501915 CCATCTTGACAGTGGCAATTTTGT 60.502 41.667 12.92 0.00 0.00 2.83
810 2467 0.323725 ATGCCCGGCTTTCTCACAAT 60.324 50.000 11.61 0.00 0.00 2.71
889 2549 0.672711 GTTCCCCGTCTAACCAGCAC 60.673 60.000 0.00 0.00 0.00 4.40
909 2569 3.003689 CACACCGAGTTTCAATCAAGCTT 59.996 43.478 0.00 0.00 0.00 3.74
910 2570 3.003689 ACACCGAGTTTCAATCAAGCTTG 59.996 43.478 20.81 20.81 0.00 4.01
911 2571 3.003689 CACCGAGTTTCAATCAAGCTTGT 59.996 43.478 25.19 10.69 0.00 3.16
912 2572 3.251004 ACCGAGTTTCAATCAAGCTTGTC 59.749 43.478 25.19 12.11 0.00 3.18
913 2573 3.473367 CGAGTTTCAATCAAGCTTGTCG 58.527 45.455 25.19 19.32 0.00 4.35
914 2574 3.059597 CGAGTTTCAATCAAGCTTGTCGT 60.060 43.478 25.19 10.65 0.00 4.34
915 2575 4.458708 GAGTTTCAATCAAGCTTGTCGTC 58.541 43.478 25.19 10.84 0.00 4.20
916 2576 3.251004 AGTTTCAATCAAGCTTGTCGTCC 59.749 43.478 25.19 9.22 0.00 4.79
917 2577 2.542020 TCAATCAAGCTTGTCGTCCA 57.458 45.000 25.19 6.03 0.00 4.02
918 2578 3.057969 TCAATCAAGCTTGTCGTCCAT 57.942 42.857 25.19 8.23 0.00 3.41
919 2579 3.411446 TCAATCAAGCTTGTCGTCCATT 58.589 40.909 25.19 13.68 0.00 3.16
920 2580 3.189080 TCAATCAAGCTTGTCGTCCATTG 59.811 43.478 25.19 23.01 0.00 2.82
921 2581 0.874390 TCAAGCTTGTCGTCCATTGC 59.126 50.000 25.19 0.00 0.00 3.56
922 2582 0.877071 CAAGCTTGTCGTCCATTGCT 59.123 50.000 18.65 0.00 35.58 3.91
931 2591 2.016318 TCGTCCATTGCTGGCTTAATG 58.984 47.619 0.00 0.00 42.80 1.90
935 2595 0.754472 CATTGCTGGCTTAATGGGGG 59.246 55.000 0.00 0.00 32.13 5.40
964 2624 3.148084 CCCAACACCTCGTCACCT 58.852 61.111 0.00 0.00 0.00 4.00
1071 2733 2.046604 GCCGCCGTTCCTAACCTT 60.047 61.111 0.00 0.00 0.00 3.50
1104 2769 1.684049 CGCACTCCTCCCTCTCCTT 60.684 63.158 0.00 0.00 0.00 3.36
1334 3011 2.608752 GCTGCTTGCATGCTTGTACTTT 60.609 45.455 23.31 0.00 42.31 2.66
1344 3021 6.538021 TGCATGCTTGTACTTTTTCACATTTT 59.462 30.769 20.33 0.00 0.00 1.82
1350 3027 9.862585 GCTTGTACTTTTTCACATTTTTATTGG 57.137 29.630 0.00 0.00 0.00 3.16
1374 3051 9.513906 TGGTTCTCATTCAATCATTTAGTTACA 57.486 29.630 0.00 0.00 0.00 2.41
1402 3080 7.719193 AGACAAAATTTTCAGTAAAAATGGGGG 59.281 33.333 0.00 0.00 44.88 5.40
1637 3317 4.982295 GGTTCTTCCATGTTGCAAAAGTAC 59.018 41.667 0.00 4.93 35.97 2.73
1643 3323 1.103803 TGTTGCAAAAGTACGGCCAA 58.896 45.000 0.00 0.00 0.00 4.52
1644 3324 1.476891 TGTTGCAAAAGTACGGCCAAA 59.523 42.857 0.00 0.00 0.00 3.28
1746 3426 2.034305 GCTATACTGGACGACGGAATGT 59.966 50.000 0.00 0.00 0.00 2.71
2172 3853 8.234546 CCTGTTTGAGTATTAAATGTTTAGCGT 58.765 33.333 0.00 0.00 0.00 5.07
2336 4027 6.348868 GCTTTCTTACTTTCCCTCATTGTGAG 60.349 42.308 0.00 0.00 43.91 3.51
2574 4265 3.033184 AGTAAATTGGCCCCATCACATG 58.967 45.455 0.00 0.00 0.00 3.21
2695 4386 6.062749 TCATACATACAGTCAGAGAGGTACC 58.937 44.000 2.73 2.73 0.00 3.34
2750 4441 7.103641 CCTTTTAGCTTGGTGTGTCTTATCTA 58.896 38.462 0.00 0.00 0.00 1.98
2859 4550 7.776107 TGCTGCTTATATATCATCAGACCTAC 58.224 38.462 0.00 0.00 0.00 3.18
2860 4551 7.617329 TGCTGCTTATATATCATCAGACCTACT 59.383 37.037 0.00 0.00 0.00 2.57
2861 4552 8.134895 GCTGCTTATATATCATCAGACCTACTC 58.865 40.741 2.62 0.00 0.00 2.59
2862 4553 8.526667 TGCTTATATATCATCAGACCTACTCC 57.473 38.462 0.00 0.00 0.00 3.85
2863 4554 7.561722 TGCTTATATATCATCAGACCTACTCCC 59.438 40.741 0.00 0.00 0.00 4.30
2864 4555 7.782644 GCTTATATATCATCAGACCTACTCCCT 59.217 40.741 0.00 0.00 0.00 4.20
2865 4556 9.349713 CTTATATATCATCAGACCTACTCCCTC 57.650 40.741 0.00 0.00 0.00 4.30
2866 4557 2.757894 TCATCAGACCTACTCCCTCC 57.242 55.000 0.00 0.00 0.00 4.30
2867 4558 1.133761 TCATCAGACCTACTCCCTCCG 60.134 57.143 0.00 0.00 0.00 4.63
2868 4559 0.927767 ATCAGACCTACTCCCTCCGT 59.072 55.000 0.00 0.00 0.00 4.69
2869 4560 0.255318 TCAGACCTACTCCCTCCGTC 59.745 60.000 0.00 0.00 0.00 4.79
2870 4561 0.752376 CAGACCTACTCCCTCCGTCC 60.752 65.000 0.00 0.00 0.00 4.79
2871 4562 0.920271 AGACCTACTCCCTCCGTCCT 60.920 60.000 0.00 0.00 0.00 3.85
2872 4563 0.466007 GACCTACTCCCTCCGTCCTC 60.466 65.000 0.00 0.00 0.00 3.71
2873 4564 1.526455 CCTACTCCCTCCGTCCTCG 60.526 68.421 0.00 0.00 0.00 4.63
2874 4565 1.525923 CTACTCCCTCCGTCCTCGA 59.474 63.158 0.00 0.00 39.71 4.04
2875 4566 0.107312 CTACTCCCTCCGTCCTCGAA 60.107 60.000 0.00 0.00 39.71 3.71
2876 4567 0.549950 TACTCCCTCCGTCCTCGAAT 59.450 55.000 0.00 0.00 39.71 3.34
2877 4568 0.549950 ACTCCCTCCGTCCTCGAATA 59.450 55.000 0.00 0.00 39.71 1.75
2878 4569 1.064166 ACTCCCTCCGTCCTCGAATAA 60.064 52.381 0.00 0.00 39.71 1.40
2879 4570 1.609555 CTCCCTCCGTCCTCGAATAAG 59.390 57.143 0.00 0.00 39.71 1.73
2880 4571 1.064166 TCCCTCCGTCCTCGAATAAGT 60.064 52.381 0.00 0.00 39.71 2.24
2881 4572 1.067212 CCCTCCGTCCTCGAATAAGTG 59.933 57.143 0.00 0.00 39.71 3.16
2882 4573 1.749634 CCTCCGTCCTCGAATAAGTGT 59.250 52.381 0.00 0.00 39.71 3.55
2883 4574 2.947652 CCTCCGTCCTCGAATAAGTGTA 59.052 50.000 0.00 0.00 39.71 2.90
2884 4575 3.243002 CCTCCGTCCTCGAATAAGTGTAC 60.243 52.174 0.00 0.00 39.71 2.90
2885 4576 3.346315 TCCGTCCTCGAATAAGTGTACA 58.654 45.455 0.00 0.00 39.71 2.90
2886 4577 3.949754 TCCGTCCTCGAATAAGTGTACAT 59.050 43.478 0.00 0.00 39.71 2.29
2887 4578 4.036027 TCCGTCCTCGAATAAGTGTACATC 59.964 45.833 0.00 0.00 39.71 3.06
2888 4579 4.036498 CCGTCCTCGAATAAGTGTACATCT 59.964 45.833 0.00 0.00 39.71 2.90
2889 4580 5.237996 CCGTCCTCGAATAAGTGTACATCTA 59.762 44.000 0.00 0.00 39.71 1.98
2890 4581 6.364261 CGTCCTCGAATAAGTGTACATCTAG 58.636 44.000 0.00 0.00 39.71 2.43
2891 4582 6.566187 CGTCCTCGAATAAGTGTACATCTAGG 60.566 46.154 0.00 3.28 39.71 3.02
2892 4583 6.262720 GTCCTCGAATAAGTGTACATCTAGGT 59.737 42.308 11.62 0.00 0.00 3.08
2893 4584 6.832384 TCCTCGAATAAGTGTACATCTAGGTT 59.168 38.462 11.62 0.00 0.00 3.50
2894 4585 7.341256 TCCTCGAATAAGTGTACATCTAGGTTT 59.659 37.037 11.62 0.00 0.00 3.27
2895 4586 7.980099 CCTCGAATAAGTGTACATCTAGGTTTT 59.020 37.037 0.00 0.00 0.00 2.43
2896 4587 8.697846 TCGAATAAGTGTACATCTAGGTTTTG 57.302 34.615 0.00 0.00 0.00 2.44
2897 4588 8.308931 TCGAATAAGTGTACATCTAGGTTTTGT 58.691 33.333 0.00 0.00 0.00 2.83
2898 4589 8.932791 CGAATAAGTGTACATCTAGGTTTTGTT 58.067 33.333 0.00 0.00 0.00 2.83
2942 4633 9.489084 AACTTTGACCAAATTTATAGGAAAAGC 57.511 29.630 16.66 0.00 35.25 3.51
2943 4634 8.646900 ACTTTGACCAAATTTATAGGAAAAGCA 58.353 29.630 16.66 0.00 35.25 3.91
2944 4635 9.143631 CTTTGACCAAATTTATAGGAAAAGCAG 57.856 33.333 0.28 0.00 0.00 4.24
2945 4636 6.630071 TGACCAAATTTATAGGAAAAGCAGC 58.370 36.000 0.28 0.00 0.00 5.25
2946 4637 6.210385 TGACCAAATTTATAGGAAAAGCAGCA 59.790 34.615 0.00 0.00 0.00 4.41
2947 4638 6.633856 ACCAAATTTATAGGAAAAGCAGCAG 58.366 36.000 0.00 0.00 0.00 4.24
2948 4639 5.521372 CCAAATTTATAGGAAAAGCAGCAGC 59.479 40.000 0.00 0.00 42.56 5.25
2949 4640 5.920193 AATTTATAGGAAAAGCAGCAGCA 57.080 34.783 3.17 0.00 45.49 4.41
2950 4641 6.475596 AATTTATAGGAAAAGCAGCAGCAT 57.524 33.333 3.17 0.00 45.49 3.79
2951 4642 5.920193 TTTATAGGAAAAGCAGCAGCATT 57.080 34.783 3.17 0.00 45.49 3.56
2952 4643 5.920193 TTATAGGAAAAGCAGCAGCATTT 57.080 34.783 3.85 3.85 43.60 2.32
2953 4644 7.403312 TTTATAGGAAAAGCAGCAGCATTTA 57.597 32.000 4.21 0.00 41.27 1.40
2954 4645 7.587037 TTATAGGAAAAGCAGCAGCATTTAT 57.413 32.000 4.21 0.10 41.27 1.40
2955 4646 4.119442 AGGAAAAGCAGCAGCATTTATG 57.881 40.909 4.21 0.00 41.27 1.90
2956 4647 3.118884 AGGAAAAGCAGCAGCATTTATGG 60.119 43.478 4.21 0.00 41.27 2.74
2957 4648 2.304751 AAAGCAGCAGCATTTATGGC 57.695 45.000 3.17 0.00 45.49 4.40
2958 4649 1.187974 AAGCAGCAGCATTTATGGCA 58.812 45.000 3.17 0.00 45.49 4.92
2959 4650 0.458669 AGCAGCAGCATTTATGGCAC 59.541 50.000 3.17 0.00 45.49 5.01
2960 4651 0.458669 GCAGCAGCATTTATGGCACT 59.541 50.000 0.00 0.00 41.58 4.40
2961 4652 1.677576 GCAGCAGCATTTATGGCACTA 59.322 47.619 0.00 0.00 41.58 2.74
2962 4653 2.542411 GCAGCAGCATTTATGGCACTAC 60.542 50.000 0.00 0.00 41.58 2.73
2963 4654 2.684374 CAGCAGCATTTATGGCACTACA 59.316 45.455 0.00 0.00 0.00 2.74
2964 4655 3.317149 CAGCAGCATTTATGGCACTACAT 59.683 43.478 0.00 0.00 34.90 2.29
2965 4656 3.956199 AGCAGCATTTATGGCACTACATT 59.044 39.130 0.00 0.00 32.39 2.71
2966 4657 4.403432 AGCAGCATTTATGGCACTACATTT 59.597 37.500 0.00 0.00 32.39 2.32
2967 4658 4.505191 GCAGCATTTATGGCACTACATTTG 59.495 41.667 0.00 0.00 32.39 2.32
2968 4659 5.653507 CAGCATTTATGGCACTACATTTGT 58.346 37.500 0.00 0.00 32.39 2.83
2969 4660 6.680131 GCAGCATTTATGGCACTACATTTGTA 60.680 38.462 0.00 0.00 32.39 2.41
2970 4661 7.428020 CAGCATTTATGGCACTACATTTGTAT 58.572 34.615 0.00 0.00 32.39 2.29
2971 4662 7.592533 CAGCATTTATGGCACTACATTTGTATC 59.407 37.037 0.00 0.00 32.39 2.24
2972 4663 6.578545 GCATTTATGGCACTACATTTGTATCG 59.421 38.462 0.00 0.00 32.39 2.92
2973 4664 5.666969 TTATGGCACTACATTTGTATCGC 57.333 39.130 0.00 0.00 32.39 4.58
2974 4665 3.260475 TGGCACTACATTTGTATCGCT 57.740 42.857 9.84 0.00 31.88 4.93
2975 4666 4.394439 TGGCACTACATTTGTATCGCTA 57.606 40.909 9.84 3.67 31.88 4.26
2976 4667 4.368315 TGGCACTACATTTGTATCGCTAG 58.632 43.478 9.84 0.00 31.88 3.42
2977 4668 4.098807 TGGCACTACATTTGTATCGCTAGA 59.901 41.667 0.00 0.00 31.88 2.43
2978 4669 5.221441 TGGCACTACATTTGTATCGCTAGAT 60.221 40.000 0.00 0.00 40.76 1.98
2979 4670 5.696724 GGCACTACATTTGTATCGCTAGATT 59.303 40.000 0.00 0.00 38.26 2.40
2980 4671 6.128795 GGCACTACATTTGTATCGCTAGATTC 60.129 42.308 0.00 0.00 38.26 2.52
2981 4672 6.399039 GCACTACATTTGTATCGCTAGATTCG 60.399 42.308 0.00 0.00 38.26 3.34
2982 4673 6.637254 CACTACATTTGTATCGCTAGATTCGT 59.363 38.462 0.00 0.00 38.26 3.85
2983 4674 7.167635 CACTACATTTGTATCGCTAGATTCGTT 59.832 37.037 0.00 0.00 38.26 3.85
2984 4675 6.903883 ACATTTGTATCGCTAGATTCGTTT 57.096 33.333 0.00 0.00 38.26 3.60
2985 4676 7.303634 ACATTTGTATCGCTAGATTCGTTTT 57.696 32.000 0.00 0.00 38.26 2.43
2986 4677 7.180079 ACATTTGTATCGCTAGATTCGTTTTG 58.820 34.615 0.00 0.00 38.26 2.44
2987 4678 6.954616 TTTGTATCGCTAGATTCGTTTTGA 57.045 33.333 0.00 0.00 38.26 2.69
2988 4679 5.944049 TGTATCGCTAGATTCGTTTTGAC 57.056 39.130 0.00 0.00 38.26 3.18
2989 4680 5.404096 TGTATCGCTAGATTCGTTTTGACA 58.596 37.500 0.00 0.00 38.26 3.58
2990 4681 6.040247 TGTATCGCTAGATTCGTTTTGACAT 58.960 36.000 0.00 0.00 38.26 3.06
2991 4682 4.840401 TCGCTAGATTCGTTTTGACATG 57.160 40.909 0.00 0.00 0.00 3.21
2992 4683 4.242475 TCGCTAGATTCGTTTTGACATGT 58.758 39.130 0.00 0.00 0.00 3.21
2993 4684 5.404096 TCGCTAGATTCGTTTTGACATGTA 58.596 37.500 0.00 0.00 0.00 2.29
2994 4685 5.287752 TCGCTAGATTCGTTTTGACATGTAC 59.712 40.000 0.00 0.00 0.00 2.90
2995 4686 5.288712 CGCTAGATTCGTTTTGACATGTACT 59.711 40.000 0.00 0.00 0.00 2.73
2996 4687 6.183360 CGCTAGATTCGTTTTGACATGTACTT 60.183 38.462 0.00 0.00 0.00 2.24
2997 4688 7.519002 GCTAGATTCGTTTTGACATGTACTTT 58.481 34.615 0.00 0.00 0.00 2.66
2998 4689 7.688578 GCTAGATTCGTTTTGACATGTACTTTC 59.311 37.037 0.00 0.00 0.00 2.62
2999 4690 7.490962 AGATTCGTTTTGACATGTACTTTCA 57.509 32.000 0.00 0.00 0.00 2.69
3000 4691 8.099364 AGATTCGTTTTGACATGTACTTTCAT 57.901 30.769 0.00 0.00 0.00 2.57
3001 4692 9.214957 AGATTCGTTTTGACATGTACTTTCATA 57.785 29.630 0.00 0.00 0.00 2.15
3002 4693 9.820229 GATTCGTTTTGACATGTACTTTCATAA 57.180 29.630 0.00 0.00 0.00 1.90
3085 4776 8.831000 TTAAAACTTTGACTTAGAACGAAAGC 57.169 30.769 0.00 0.00 0.00 3.51
3086 4777 6.679327 AAACTTTGACTTAGAACGAAAGCT 57.321 33.333 0.00 0.00 0.00 3.74
3087 4778 7.781548 AAACTTTGACTTAGAACGAAAGCTA 57.218 32.000 0.00 0.00 0.00 3.32
3088 4779 7.409465 AACTTTGACTTAGAACGAAAGCTAG 57.591 36.000 0.00 0.00 0.00 3.42
3089 4780 6.746120 ACTTTGACTTAGAACGAAAGCTAGA 58.254 36.000 0.00 0.00 0.00 2.43
3090 4781 7.379750 ACTTTGACTTAGAACGAAAGCTAGAT 58.620 34.615 0.00 0.00 0.00 1.98
3091 4782 7.329717 ACTTTGACTTAGAACGAAAGCTAGATG 59.670 37.037 0.00 0.00 0.00 2.90
3092 4783 6.268825 TGACTTAGAACGAAAGCTAGATGT 57.731 37.500 0.00 0.00 0.00 3.06
3093 4784 7.387119 TGACTTAGAACGAAAGCTAGATGTA 57.613 36.000 0.00 0.00 0.00 2.29
3094 4785 7.249147 TGACTTAGAACGAAAGCTAGATGTAC 58.751 38.462 0.00 0.00 0.00 2.90
3095 4786 7.094506 TGACTTAGAACGAAAGCTAGATGTACA 60.095 37.037 0.00 0.00 0.00 2.90
3096 4787 7.028361 ACTTAGAACGAAAGCTAGATGTACAC 58.972 38.462 0.00 0.00 0.00 2.90
3097 4788 5.646577 AGAACGAAAGCTAGATGTACACT 57.353 39.130 0.00 0.13 0.00 3.55
3098 4789 6.026947 AGAACGAAAGCTAGATGTACACTT 57.973 37.500 0.00 0.00 0.00 3.16
3099 4790 7.154435 AGAACGAAAGCTAGATGTACACTTA 57.846 36.000 0.00 0.00 0.00 2.24
3100 4791 7.773149 AGAACGAAAGCTAGATGTACACTTAT 58.227 34.615 0.00 0.00 0.00 1.73
3101 4792 8.251721 AGAACGAAAGCTAGATGTACACTTATT 58.748 33.333 0.00 0.00 0.00 1.40
3102 4793 7.988904 ACGAAAGCTAGATGTACACTTATTC 57.011 36.000 0.00 0.00 0.00 1.75
3103 4794 6.691818 ACGAAAGCTAGATGTACACTTATTCG 59.308 38.462 17.67 17.67 30.76 3.34
3104 4795 6.691818 CGAAAGCTAGATGTACACTTATTCGT 59.308 38.462 0.00 0.00 0.00 3.85
3105 4796 7.305475 CGAAAGCTAGATGTACACTTATTCGTG 60.305 40.741 0.00 0.00 40.67 4.35
3106 4797 5.833082 AGCTAGATGTACACTTATTCGTGG 58.167 41.667 0.00 0.00 39.19 4.94
3107 4798 5.593095 AGCTAGATGTACACTTATTCGTGGA 59.407 40.000 0.00 0.00 39.19 4.02
3108 4799 5.686397 GCTAGATGTACACTTATTCGTGGAC 59.314 44.000 0.00 0.00 46.62 4.02
3111 4802 3.492421 GTACACTTATTCGTGGACGGA 57.508 47.619 0.00 0.00 38.82 4.69
3112 4803 2.649331 ACACTTATTCGTGGACGGAG 57.351 50.000 0.00 0.00 39.19 4.63
3113 4804 1.203994 ACACTTATTCGTGGACGGAGG 59.796 52.381 0.00 0.00 39.19 4.30
3114 4805 0.822164 ACTTATTCGTGGACGGAGGG 59.178 55.000 0.00 0.00 40.29 4.30
3115 4806 1.108776 CTTATTCGTGGACGGAGGGA 58.891 55.000 0.00 0.00 40.29 4.20
3116 4807 1.067212 CTTATTCGTGGACGGAGGGAG 59.933 57.143 0.00 0.00 40.29 4.30
3117 4808 0.033796 TATTCGTGGACGGAGGGAGT 60.034 55.000 0.00 0.00 40.29 3.85
3118 4809 0.033796 ATTCGTGGACGGAGGGAGTA 60.034 55.000 0.00 0.00 40.29 2.59
3209 4901 8.650143 TCATTTAAAGCCTTAAGATGTTCCTT 57.350 30.769 3.36 0.00 0.00 3.36
3251 5035 1.475403 TAGCTGCCTACCTCACACTC 58.525 55.000 0.00 0.00 0.00 3.51
3256 5040 3.561143 CTGCCTACCTCACACTCTATCT 58.439 50.000 0.00 0.00 0.00 1.98
3436 5221 2.755655 CGACCACTCAAGACCTAGACAT 59.244 50.000 0.00 0.00 0.00 3.06
3521 5306 3.031417 GCCCACTAGTCGGCCACAT 62.031 63.158 19.89 0.00 39.39 3.21
3538 5323 1.155889 CATAAGCACACAGAACGCCA 58.844 50.000 0.00 0.00 0.00 5.69
3662 5447 4.500116 GACCGCTGGACTCGCCTC 62.500 72.222 1.50 0.00 37.63 4.70
3877 5662 3.053291 TCAACCCACGCGCCAATC 61.053 61.111 5.73 0.00 0.00 2.67
3928 5713 2.170607 AGGGAGGTAACAACATCGATGG 59.829 50.000 28.09 14.45 41.41 3.51
3929 5714 2.561569 GGAGGTAACAACATCGATGGG 58.438 52.381 28.09 21.19 41.41 4.00
3934 5719 2.113860 AACAACATCGATGGGACTGG 57.886 50.000 28.09 8.37 0.00 4.00
4006 5791 2.238898 CCTAGACTACAAAAGGTGGGGG 59.761 54.545 0.00 0.00 31.13 5.40
4136 5921 0.037590 ACCGCTCATGCCAAAGGTTA 59.962 50.000 0.00 0.00 35.36 2.85
4170 5955 4.542697 AGGCACTTCCTCAAAAACCTAAA 58.457 39.130 0.00 0.00 43.20 1.85
4173 5958 5.926542 GGCACTTCCTCAAAAACCTAAAATC 59.073 40.000 0.00 0.00 0.00 2.17
4179 5964 4.279922 CCTCAAAAACCTAAAATCACCCGT 59.720 41.667 0.00 0.00 0.00 5.28
4201 5986 3.951563 ATTATGCTAGCCTGGAAACCA 57.048 42.857 13.29 0.00 0.00 3.67
4203 5988 1.839424 ATGCTAGCCTGGAAACCAAC 58.161 50.000 13.29 0.00 30.80 3.77
4204 5989 0.476338 TGCTAGCCTGGAAACCAACA 59.524 50.000 13.29 0.00 30.80 3.33
4205 5990 1.133637 TGCTAGCCTGGAAACCAACAA 60.134 47.619 13.29 0.00 30.80 2.83
4206 5991 1.541588 GCTAGCCTGGAAACCAACAAG 59.458 52.381 2.29 0.00 30.80 3.16
4207 5992 2.162681 CTAGCCTGGAAACCAACAAGG 58.837 52.381 0.00 0.00 45.67 3.61
4208 5993 0.469892 AGCCTGGAAACCAACAAGGG 60.470 55.000 0.00 0.00 43.89 3.95
4209 5994 0.759060 GCCTGGAAACCAACAAGGGT 60.759 55.000 0.00 0.00 45.04 4.34
4210 5995 1.328279 CCTGGAAACCAACAAGGGTC 58.672 55.000 0.00 0.00 41.32 4.46
4238 6077 2.846532 CCAACCCAAGGAGCTGGT 59.153 61.111 0.00 0.00 34.33 4.00
4262 6101 4.828296 CCCAGGGGCCTGTGCATC 62.828 72.222 0.84 0.00 42.15 3.91
4312 6151 3.346315 CAGGTCTGTTGTGATAATGCCA 58.654 45.455 0.00 0.00 0.00 4.92
4373 6212 2.700722 TGCCAATTACATACCGCAGA 57.299 45.000 0.00 0.00 0.00 4.26
4424 6263 0.670546 CAACAGATCAACCCTCGCGT 60.671 55.000 5.77 0.00 0.00 6.01
4443 6282 2.450502 ACCAGCCACAAGGGACCT 60.451 61.111 0.00 0.00 40.01 3.85
4852 6986 3.988976 ATCTGCTTCTCTGGCAAACTA 57.011 42.857 0.00 0.00 39.30 2.24
4904 7038 2.584791 GGCAAAGTCAACTGCATAACG 58.415 47.619 0.00 0.00 40.46 3.18
4967 7102 9.823647 GATGAACCATTTGAAGAGATAGACTTA 57.176 33.333 0.00 0.00 0.00 2.24
5041 7176 4.557301 GCCGTTGAACTCATTAAAAATCCG 59.443 41.667 0.00 0.00 0.00 4.18
5071 7206 9.793252 ATATTTTTGAATCATTGGAGTTCTTCG 57.207 29.630 0.00 0.00 0.00 3.79
5076 7211 7.539712 TGAATCATTGGAGTTCTTCGAATAC 57.460 36.000 0.00 0.00 33.12 1.89
5106 7241 4.829872 ATGAATTGGTTGCCACATCAAT 57.170 36.364 6.27 0.00 33.84 2.57
6226 8389 4.171103 CTAGTTTCCCCGGGCCCG 62.171 72.222 37.99 37.99 39.44 6.13
6342 8512 0.605589 GCGCTAGGGTTCCAACTTGT 60.606 55.000 8.77 0.00 0.00 3.16
6563 8733 2.823154 AGTGTCTGCTACCTCTCTTCAC 59.177 50.000 0.00 0.00 0.00 3.18
6618 8788 6.099159 TCCACATCAGCAAATCAAATCAAA 57.901 33.333 0.00 0.00 0.00 2.69
6620 8790 7.838884 TCCACATCAGCAAATCAAATCAAATA 58.161 30.769 0.00 0.00 0.00 1.40
6767 8937 5.817816 ACAATAGTCTAGCTGTTGCAATACC 59.182 40.000 17.30 0.00 46.24 2.73
6771 8941 1.942657 CTAGCTGTTGCAATACCGCAT 59.057 47.619 0.59 0.00 42.62 4.73
6844 9014 6.679884 GCATGGTGATTGATTTTCTCTCCTTC 60.680 42.308 0.00 0.00 0.00 3.46
6918 9088 6.533730 TGTGGATCAACATAACAAAGAGACT 58.466 36.000 0.00 0.00 0.00 3.24
6971 9143 4.501071 TCTTAGAATTCCCTGCGTACAAC 58.499 43.478 0.65 0.00 0.00 3.32
7003 9175 7.449704 GGGATAATCCATTTGACTGCTTATTCT 59.550 37.037 0.00 0.00 38.64 2.40
7210 9383 3.805207 CCATGAGTTGCTGATGATCTGA 58.195 45.455 3.33 0.00 26.55 3.27
7228 9401 2.744202 CTGATTATATTCGGCTGGGCAC 59.256 50.000 0.00 0.00 0.00 5.01
7439 9613 4.219288 GGGATTCCCATCTATTGTTCATGC 59.781 45.833 17.36 0.00 44.65 4.06
7455 9629 0.385473 ATGCGTTGCTTTCGGTTTCG 60.385 50.000 0.00 0.00 37.82 3.46
7693 9875 2.158769 AGCGGACAAATGAGGCATATCA 60.159 45.455 0.00 0.00 0.00 2.15
7698 9880 4.038282 GGACAAATGAGGCATATCATTGCA 59.962 41.667 10.64 0.00 46.64 4.08
7713 9895 5.981088 TCATTGCATGTTTTATCACTGGT 57.019 34.783 0.00 0.00 0.00 4.00
7792 9977 6.366332 AGACTACTATTTCTTCGTTGCACTTG 59.634 38.462 0.00 0.00 0.00 3.16
8155 10347 4.261447 GGTAATTGGTTAATTAGCTGCCCG 60.261 45.833 12.27 0.00 46.30 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 2.624838 CAATGGAAAGCTTCACAGGTGT 59.375 45.455 0.00 0.00 0.00 4.16
19 20 0.604578 GCAGGCAATGGAAAGCTTCA 59.395 50.000 0.00 0.00 0.00 3.02
27 28 2.747460 GCACGAGCAGGCAATGGA 60.747 61.111 0.00 0.00 41.58 3.41
49 50 4.249020 CTGCAACGGCGCACACAA 62.249 61.111 10.83 0.00 45.35 3.33
59 60 2.743928 GGGAGGTGAGCTGCAACG 60.744 66.667 5.36 0.00 39.91 4.10
153 154 1.440708 TTGGTGTTGTTGTTCGTCGT 58.559 45.000 0.00 0.00 0.00 4.34
174 175 2.766925 AAGCTGCTTCCCCCACACA 61.767 57.895 9.53 0.00 0.00 3.72
217 218 4.344359 TGTTCAGCACCTACACACATTA 57.656 40.909 0.00 0.00 0.00 1.90
244 247 5.337219 TGTGCTTACAAGTTGTTCGTATG 57.663 39.130 14.90 0.00 0.00 2.39
251 254 6.262601 GTGTACAATTGTGCTTACAAGTTGT 58.737 36.000 24.30 14.05 36.42 3.32
278 281 7.928706 CAGGTTCTAGCAAAGTATAGCTTACAT 59.071 37.037 0.00 0.00 42.05 2.29
293 296 6.041182 TGAACAAGTAGTAACAGGTTCTAGCA 59.959 38.462 0.00 0.00 39.61 3.49
375 384 0.324943 GCTGCTTGGAACCTAGTCCA 59.675 55.000 0.00 0.00 46.24 4.02
413 422 2.356553 GCGCAACACGTACCCTGA 60.357 61.111 0.30 0.00 46.11 3.86
448 457 2.143876 TCTCCTGGACATCATCGTCA 57.856 50.000 0.00 0.00 37.66 4.35
450 459 1.611006 CGATCTCCTGGACATCATCGT 59.389 52.381 11.74 0.00 0.00 3.73
453 462 1.611006 CGTCGATCTCCTGGACATCAT 59.389 52.381 11.74 0.00 32.51 2.45
457 466 0.322187 TGACGTCGATCTCCTGGACA 60.322 55.000 11.62 0.00 32.51 4.02
476 485 1.226974 CGTGATGTCGATCGGCCTT 60.227 57.895 18.47 4.39 0.00 4.35
498 507 0.616111 AGGCTGAATCTCCTGGACGT 60.616 55.000 0.00 0.00 0.00 4.34
519 528 3.392431 CGAGTTGCAGATCGCCTG 58.608 61.111 9.32 1.00 45.67 4.85
538 547 3.720630 GCGCGCAATTAATCAAAAACACC 60.721 43.478 29.10 0.00 0.00 4.16
549 558 3.120165 TCACTTAACATGCGCGCAATTAA 60.120 39.130 39.68 35.64 0.00 1.40
551 560 1.198867 TCACTTAACATGCGCGCAATT 59.801 42.857 39.68 33.44 0.00 2.32
570 579 3.927142 ACGCAGTACTTTGCTATGTTCTC 59.073 43.478 5.66 0.00 41.94 2.87
598 607 2.028385 GTCTTCATGTACCCGGTCACTT 60.028 50.000 0.00 0.00 0.00 3.16
599 608 1.549170 GTCTTCATGTACCCGGTCACT 59.451 52.381 0.00 0.00 0.00 3.41
615 624 2.553904 CCAGACTGCCCTTGAATGTCTT 60.554 50.000 0.00 0.00 36.05 3.01
645 654 7.169982 CCTTTTATTTTTCCATTTACACGCACA 59.830 33.333 0.00 0.00 0.00 4.57
672 682 6.639563 CCATTTCCCACCTTTTATCGATTTT 58.360 36.000 1.71 0.00 0.00 1.82
690 700 5.010012 CCTACCTTGATTACCATGCCATTTC 59.990 44.000 0.00 0.00 0.00 2.17
712 722 2.133359 TTGCCACTCAGCTCATGCCT 62.133 55.000 0.00 0.00 40.80 4.75
721 731 5.170748 GGGTTTCATAAAATTGCCACTCAG 58.829 41.667 0.00 0.00 0.00 3.35
736 746 3.424703 CCACTGTCAAGATGGGTTTCAT 58.575 45.455 0.00 0.00 39.13 2.57
737 747 2.862541 CCACTGTCAAGATGGGTTTCA 58.137 47.619 0.00 0.00 0.00 2.69
766 776 2.361757 CCACTTTCAACATGTGGCTTCA 59.638 45.455 0.00 0.00 42.28 3.02
798 2455 2.157738 AGCTGGTCATTGTGAGAAAGC 58.842 47.619 0.00 0.00 31.27 3.51
799 2456 3.672808 AGAGCTGGTCATTGTGAGAAAG 58.327 45.455 9.78 0.00 0.00 2.62
849 2507 8.459635 GGGAACTAACAAAATCCATAGAAGTTC 58.540 37.037 0.00 0.00 39.53 3.01
870 2528 0.672711 GTGCTGGTTAGACGGGGAAC 60.673 60.000 0.00 0.00 0.00 3.62
889 2549 3.003689 ACAAGCTTGATTGAAACTCGGTG 59.996 43.478 32.50 1.03 34.20 4.94
909 2569 0.323302 TAAGCCAGCAATGGACGACA 59.677 50.000 0.00 0.00 0.00 4.35
910 2570 1.448985 TTAAGCCAGCAATGGACGAC 58.551 50.000 0.00 0.00 0.00 4.34
911 2571 2.016318 CATTAAGCCAGCAATGGACGA 58.984 47.619 0.00 0.00 0.00 4.20
912 2572 2.480224 CATTAAGCCAGCAATGGACG 57.520 50.000 0.00 0.00 0.00 4.79
916 2576 0.754472 CCCCCATTAAGCCAGCAATG 59.246 55.000 0.00 0.00 32.94 2.82
917 2577 0.636101 TCCCCCATTAAGCCAGCAAT 59.364 50.000 0.00 0.00 0.00 3.56
918 2578 0.411452 TTCCCCCATTAAGCCAGCAA 59.589 50.000 0.00 0.00 0.00 3.91
919 2579 0.411452 TTTCCCCCATTAAGCCAGCA 59.589 50.000 0.00 0.00 0.00 4.41
920 2580 1.482182 CTTTTCCCCCATTAAGCCAGC 59.518 52.381 0.00 0.00 0.00 4.85
921 2581 2.110578 CCTTTTCCCCCATTAAGCCAG 58.889 52.381 0.00 0.00 0.00 4.85
922 2582 1.899438 GCCTTTTCCCCCATTAAGCCA 60.899 52.381 0.00 0.00 0.00 4.75
955 2615 2.126307 CTGTCGCCAGGTGACGAG 60.126 66.667 25.09 19.20 44.86 4.18
1122 2796 4.458829 ATGACGGGGAGGCGGAGA 62.459 66.667 0.00 0.00 0.00 3.71
1374 3051 9.108284 CCCATTTTTACTGAAAATTTTGTCTGT 57.892 29.630 8.47 7.77 43.65 3.41
1402 3080 5.038033 CGTTAGCTTAGGACATGAAGAGTC 58.962 45.833 0.00 0.00 35.29 3.36
1419 3099 2.887733 CGACAGTTGTGAAACGTTAGC 58.112 47.619 0.00 0.00 42.39 3.09
1609 3289 1.895131 GCAACATGGAAGAACCCACAT 59.105 47.619 0.00 0.00 39.34 3.21
1637 3317 0.378257 CACAAGGATCGATTTGGCCG 59.622 55.000 13.06 0.10 0.00 6.13
1643 3323 3.209410 GAAGGCATCACAAGGATCGATT 58.791 45.455 0.00 0.00 32.57 3.34
1644 3324 2.486191 GGAAGGCATCACAAGGATCGAT 60.486 50.000 0.00 0.00 32.57 3.59
2172 3853 6.539826 CAGTGCCTCATGTCAAGAACAATATA 59.460 38.462 0.00 0.00 42.37 0.86
2336 4027 2.652941 TTTCCGGATGCAATTTCAGC 57.347 45.000 4.15 0.00 0.00 4.26
2695 4386 4.402474 ACAAAGGAAGTGTGAGGGAAAAAG 59.598 41.667 0.00 0.00 0.00 2.27
2750 4441 2.226962 ACAGGCAGCATTCCATTTCT 57.773 45.000 0.00 0.00 0.00 2.52
2859 4550 1.609555 CTTATTCGAGGACGGAGGGAG 59.390 57.143 0.00 0.00 40.21 4.30
2860 4551 1.064166 ACTTATTCGAGGACGGAGGGA 60.064 52.381 0.00 0.00 40.21 4.20
2861 4552 1.067212 CACTTATTCGAGGACGGAGGG 59.933 57.143 0.00 0.00 40.21 4.30
2862 4553 1.749634 ACACTTATTCGAGGACGGAGG 59.250 52.381 0.00 0.00 40.21 4.30
2863 4554 3.376234 TGTACACTTATTCGAGGACGGAG 59.624 47.826 0.00 0.00 40.21 4.63
2864 4555 3.346315 TGTACACTTATTCGAGGACGGA 58.654 45.455 0.00 0.00 40.21 4.69
2865 4556 3.770263 TGTACACTTATTCGAGGACGG 57.230 47.619 0.00 0.00 40.21 4.79
2866 4557 5.171147 AGATGTACACTTATTCGAGGACG 57.829 43.478 0.00 0.00 41.26 4.79
2867 4558 6.262720 ACCTAGATGTACACTTATTCGAGGAC 59.737 42.308 22.09 0.00 0.00 3.85
2868 4559 6.363065 ACCTAGATGTACACTTATTCGAGGA 58.637 40.000 22.09 0.00 0.00 3.71
2869 4560 6.636562 ACCTAGATGTACACTTATTCGAGG 57.363 41.667 16.55 16.55 0.00 4.63
2870 4561 8.808529 CAAAACCTAGATGTACACTTATTCGAG 58.191 37.037 0.00 0.00 0.00 4.04
2871 4562 8.308931 ACAAAACCTAGATGTACACTTATTCGA 58.691 33.333 0.00 0.00 0.00 3.71
2872 4563 8.475331 ACAAAACCTAGATGTACACTTATTCG 57.525 34.615 0.00 0.00 0.00 3.34
2916 4607 9.489084 GCTTTTCCTATAAATTTGGTCAAAGTT 57.511 29.630 12.58 12.58 40.90 2.66
2917 4608 8.646900 TGCTTTTCCTATAAATTTGGTCAAAGT 58.353 29.630 0.00 0.00 33.32 2.66
2918 4609 9.143631 CTGCTTTTCCTATAAATTTGGTCAAAG 57.856 33.333 0.00 8.06 33.32 2.77
2919 4610 7.602265 GCTGCTTTTCCTATAAATTTGGTCAAA 59.398 33.333 0.00 0.00 34.46 2.69
2920 4611 7.096551 GCTGCTTTTCCTATAAATTTGGTCAA 58.903 34.615 0.00 0.00 0.00 3.18
2921 4612 6.210385 TGCTGCTTTTCCTATAAATTTGGTCA 59.790 34.615 0.00 0.00 0.00 4.02
2922 4613 6.630071 TGCTGCTTTTCCTATAAATTTGGTC 58.370 36.000 0.00 0.00 0.00 4.02
2923 4614 6.603940 TGCTGCTTTTCCTATAAATTTGGT 57.396 33.333 0.00 0.00 0.00 3.67
2924 4615 5.521372 GCTGCTGCTTTTCCTATAAATTTGG 59.479 40.000 8.53 0.00 36.03 3.28
2925 4616 6.101332 TGCTGCTGCTTTTCCTATAAATTTG 58.899 36.000 17.00 0.00 40.48 2.32
2926 4617 6.284891 TGCTGCTGCTTTTCCTATAAATTT 57.715 33.333 17.00 0.00 40.48 1.82
2927 4618 5.920193 TGCTGCTGCTTTTCCTATAAATT 57.080 34.783 17.00 0.00 40.48 1.82
2928 4619 6.475596 AATGCTGCTGCTTTTCCTATAAAT 57.524 33.333 17.00 0.00 40.48 1.40
2929 4620 5.920193 AATGCTGCTGCTTTTCCTATAAA 57.080 34.783 17.00 0.00 40.48 1.40
2930 4621 5.920193 AAATGCTGCTGCTTTTCCTATAA 57.080 34.783 19.41 0.00 40.90 0.98
2931 4622 6.016024 CCATAAATGCTGCTGCTTTTCCTATA 60.016 38.462 25.63 13.28 42.83 1.31
2932 4623 5.221382 CCATAAATGCTGCTGCTTTTCCTAT 60.221 40.000 25.63 15.15 42.83 2.57
2933 4624 4.098349 CCATAAATGCTGCTGCTTTTCCTA 59.902 41.667 25.63 13.85 42.83 2.94
2934 4625 3.118884 CCATAAATGCTGCTGCTTTTCCT 60.119 43.478 25.63 15.41 42.83 3.36
2935 4626 3.192466 CCATAAATGCTGCTGCTTTTCC 58.808 45.455 25.63 0.00 42.83 3.13
2936 4627 2.606272 GCCATAAATGCTGCTGCTTTTC 59.394 45.455 25.63 12.73 42.83 2.29
2937 4628 2.027929 TGCCATAAATGCTGCTGCTTTT 60.028 40.909 25.34 25.34 44.86 2.27
2938 4629 1.551430 TGCCATAAATGCTGCTGCTTT 59.449 42.857 17.00 13.50 40.48 3.51
2939 4630 1.134907 GTGCCATAAATGCTGCTGCTT 60.135 47.619 17.00 7.67 40.48 3.91
2940 4631 0.458669 GTGCCATAAATGCTGCTGCT 59.541 50.000 17.00 0.00 40.48 4.24
2941 4632 0.458669 AGTGCCATAAATGCTGCTGC 59.541 50.000 8.89 8.89 40.20 5.25
2942 4633 2.684374 TGTAGTGCCATAAATGCTGCTG 59.316 45.455 0.00 0.00 0.00 4.41
2943 4634 3.003394 TGTAGTGCCATAAATGCTGCT 57.997 42.857 0.00 0.00 0.00 4.24
2944 4635 3.996150 ATGTAGTGCCATAAATGCTGC 57.004 42.857 0.00 0.00 0.00 5.25
2945 4636 5.653507 ACAAATGTAGTGCCATAAATGCTG 58.346 37.500 0.00 0.00 0.00 4.41
2946 4637 5.920193 ACAAATGTAGTGCCATAAATGCT 57.080 34.783 0.00 0.00 0.00 3.79
2947 4638 6.578545 CGATACAAATGTAGTGCCATAAATGC 59.421 38.462 0.00 0.00 33.52 3.56
2948 4639 6.578545 GCGATACAAATGTAGTGCCATAAATG 59.421 38.462 8.02 0.00 33.52 2.32
2949 4640 6.486657 AGCGATACAAATGTAGTGCCATAAAT 59.513 34.615 13.16 0.00 36.09 1.40
2950 4641 5.820423 AGCGATACAAATGTAGTGCCATAAA 59.180 36.000 13.16 0.00 36.09 1.40
2951 4642 5.364778 AGCGATACAAATGTAGTGCCATAA 58.635 37.500 13.16 0.00 36.09 1.90
2952 4643 4.956085 AGCGATACAAATGTAGTGCCATA 58.044 39.130 13.16 0.00 36.09 2.74
2953 4644 3.808728 AGCGATACAAATGTAGTGCCAT 58.191 40.909 13.16 0.00 36.09 4.40
2954 4645 3.260475 AGCGATACAAATGTAGTGCCA 57.740 42.857 13.16 0.00 36.09 4.92
2955 4646 4.617959 TCTAGCGATACAAATGTAGTGCC 58.382 43.478 13.16 0.00 36.09 5.01
2956 4647 6.399039 CGAATCTAGCGATACAAATGTAGTGC 60.399 42.308 10.25 10.25 35.86 4.40
2957 4648 6.637254 ACGAATCTAGCGATACAAATGTAGTG 59.363 38.462 0.00 0.00 33.52 2.74
2958 4649 6.736123 ACGAATCTAGCGATACAAATGTAGT 58.264 36.000 0.00 0.00 33.52 2.73
2959 4650 7.624706 AACGAATCTAGCGATACAAATGTAG 57.375 36.000 0.00 0.00 33.52 2.74
2960 4651 7.997107 AAACGAATCTAGCGATACAAATGTA 57.003 32.000 0.00 0.00 34.67 2.29
2961 4652 6.903883 AAACGAATCTAGCGATACAAATGT 57.096 33.333 0.00 0.00 0.00 2.71
2962 4653 7.370836 GTCAAAACGAATCTAGCGATACAAATG 59.629 37.037 0.00 0.00 0.00 2.32
2963 4654 7.064134 TGTCAAAACGAATCTAGCGATACAAAT 59.936 33.333 0.00 0.00 0.00 2.32
2964 4655 6.366604 TGTCAAAACGAATCTAGCGATACAAA 59.633 34.615 0.00 0.00 0.00 2.83
2965 4656 5.865013 TGTCAAAACGAATCTAGCGATACAA 59.135 36.000 0.00 0.00 0.00 2.41
2966 4657 5.404096 TGTCAAAACGAATCTAGCGATACA 58.596 37.500 0.00 0.00 0.00 2.29
2967 4658 5.944049 TGTCAAAACGAATCTAGCGATAC 57.056 39.130 0.00 0.00 0.00 2.24
2968 4659 6.040247 ACATGTCAAAACGAATCTAGCGATA 58.960 36.000 0.00 0.00 0.00 2.92
2969 4660 4.870426 ACATGTCAAAACGAATCTAGCGAT 59.130 37.500 0.00 0.00 0.00 4.58
2970 4661 4.242475 ACATGTCAAAACGAATCTAGCGA 58.758 39.130 0.00 0.00 0.00 4.93
2971 4662 4.584029 ACATGTCAAAACGAATCTAGCG 57.416 40.909 0.00 0.00 0.00 4.26
2972 4663 6.648725 AGTACATGTCAAAACGAATCTAGC 57.351 37.500 0.00 0.00 0.00 3.42
2973 4664 8.708742 TGAAAGTACATGTCAAAACGAATCTAG 58.291 33.333 0.00 0.00 0.00 2.43
2974 4665 8.596271 TGAAAGTACATGTCAAAACGAATCTA 57.404 30.769 0.00 0.00 0.00 1.98
2975 4666 7.490962 TGAAAGTACATGTCAAAACGAATCT 57.509 32.000 0.00 0.00 0.00 2.40
2976 4667 9.820229 TTATGAAAGTACATGTCAAAACGAATC 57.180 29.630 0.00 0.00 0.00 2.52
3059 4750 9.281075 GCTTTCGTTCTAAGTCAAAGTTTTAAA 57.719 29.630 0.00 0.00 0.00 1.52
3060 4751 8.671028 AGCTTTCGTTCTAAGTCAAAGTTTTAA 58.329 29.630 0.00 0.00 0.00 1.52
3061 4752 8.205131 AGCTTTCGTTCTAAGTCAAAGTTTTA 57.795 30.769 0.00 0.00 0.00 1.52
3062 4753 7.085052 AGCTTTCGTTCTAAGTCAAAGTTTT 57.915 32.000 0.00 0.00 0.00 2.43
3063 4754 6.679327 AGCTTTCGTTCTAAGTCAAAGTTT 57.321 33.333 0.00 0.00 0.00 2.66
3064 4755 7.208080 TCTAGCTTTCGTTCTAAGTCAAAGTT 58.792 34.615 0.00 0.00 0.00 2.66
3065 4756 6.746120 TCTAGCTTTCGTTCTAAGTCAAAGT 58.254 36.000 0.00 0.00 0.00 2.66
3066 4757 7.329717 ACATCTAGCTTTCGTTCTAAGTCAAAG 59.670 37.037 0.00 0.00 0.00 2.77
3067 4758 7.152645 ACATCTAGCTTTCGTTCTAAGTCAAA 58.847 34.615 0.00 0.00 0.00 2.69
3068 4759 6.688578 ACATCTAGCTTTCGTTCTAAGTCAA 58.311 36.000 0.00 0.00 0.00 3.18
3069 4760 6.268825 ACATCTAGCTTTCGTTCTAAGTCA 57.731 37.500 0.00 0.00 0.00 3.41
3070 4761 7.218583 GTGTACATCTAGCTTTCGTTCTAAGTC 59.781 40.741 0.00 0.00 0.00 3.01
3071 4762 7.028361 GTGTACATCTAGCTTTCGTTCTAAGT 58.972 38.462 0.00 0.00 0.00 2.24
3072 4763 7.251994 AGTGTACATCTAGCTTTCGTTCTAAG 58.748 38.462 0.00 0.00 0.00 2.18
3073 4764 7.154435 AGTGTACATCTAGCTTTCGTTCTAA 57.846 36.000 0.00 0.00 0.00 2.10
3074 4765 6.754702 AGTGTACATCTAGCTTTCGTTCTA 57.245 37.500 0.00 0.00 0.00 2.10
3075 4766 5.646577 AGTGTACATCTAGCTTTCGTTCT 57.353 39.130 0.00 0.00 0.00 3.01
3076 4767 7.988904 ATAAGTGTACATCTAGCTTTCGTTC 57.011 36.000 0.00 0.00 0.00 3.95
3077 4768 7.220300 CGAATAAGTGTACATCTAGCTTTCGTT 59.780 37.037 0.00 0.00 0.00 3.85
3078 4769 6.691818 CGAATAAGTGTACATCTAGCTTTCGT 59.308 38.462 0.00 0.00 0.00 3.85
3079 4770 6.691818 ACGAATAAGTGTACATCTAGCTTTCG 59.308 38.462 0.00 10.45 0.00 3.46
3080 4771 7.043325 CCACGAATAAGTGTACATCTAGCTTTC 60.043 40.741 0.00 0.00 40.33 2.62
3081 4772 6.757010 CCACGAATAAGTGTACATCTAGCTTT 59.243 38.462 0.00 0.00 40.33 3.51
3082 4773 6.096423 TCCACGAATAAGTGTACATCTAGCTT 59.904 38.462 0.00 0.00 40.33 3.74
3083 4774 5.593095 TCCACGAATAAGTGTACATCTAGCT 59.407 40.000 0.00 0.00 40.33 3.32
3084 4775 5.686397 GTCCACGAATAAGTGTACATCTAGC 59.314 44.000 0.00 0.00 40.33 3.42
3085 4776 5.907945 CGTCCACGAATAAGTGTACATCTAG 59.092 44.000 0.00 0.00 43.02 2.43
3086 4777 5.220912 CCGTCCACGAATAAGTGTACATCTA 60.221 44.000 0.00 0.00 43.02 1.98
3087 4778 4.439700 CCGTCCACGAATAAGTGTACATCT 60.440 45.833 0.00 0.00 43.02 2.90
3088 4779 3.795101 CCGTCCACGAATAAGTGTACATC 59.205 47.826 0.00 0.00 43.02 3.06
3089 4780 3.444742 TCCGTCCACGAATAAGTGTACAT 59.555 43.478 0.00 0.00 43.02 2.29
3090 4781 2.819019 TCCGTCCACGAATAAGTGTACA 59.181 45.455 0.00 0.00 43.02 2.90
3091 4782 3.432782 CTCCGTCCACGAATAAGTGTAC 58.567 50.000 0.00 0.00 43.02 2.90
3092 4783 2.424601 CCTCCGTCCACGAATAAGTGTA 59.575 50.000 0.00 0.00 43.02 2.90
3093 4784 1.203994 CCTCCGTCCACGAATAAGTGT 59.796 52.381 0.00 0.00 43.02 3.55
3094 4785 1.470979 CCCTCCGTCCACGAATAAGTG 60.471 57.143 0.00 0.00 43.02 3.16
3095 4786 0.822164 CCCTCCGTCCACGAATAAGT 59.178 55.000 0.00 0.00 43.02 2.24
3096 4787 1.067212 CTCCCTCCGTCCACGAATAAG 59.933 57.143 0.00 0.00 43.02 1.73
3097 4788 1.108776 CTCCCTCCGTCCACGAATAA 58.891 55.000 0.00 0.00 43.02 1.40
3098 4789 0.033796 ACTCCCTCCGTCCACGAATA 60.034 55.000 0.00 0.00 43.02 1.75
3099 4790 0.033796 TACTCCCTCCGTCCACGAAT 60.034 55.000 0.00 0.00 43.02 3.34
3100 4791 0.251297 TTACTCCCTCCGTCCACGAA 60.251 55.000 0.00 0.00 43.02 3.85
3101 4792 0.033796 ATTACTCCCTCCGTCCACGA 60.034 55.000 0.00 0.00 43.02 4.35
3102 4793 0.822164 AATTACTCCCTCCGTCCACG 59.178 55.000 0.00 0.00 39.44 4.94
3103 4794 4.141779 ACATTAATTACTCCCTCCGTCCAC 60.142 45.833 0.00 0.00 0.00 4.02
3104 4795 4.035112 ACATTAATTACTCCCTCCGTCCA 58.965 43.478 0.00 0.00 0.00 4.02
3105 4796 4.684484 ACATTAATTACTCCCTCCGTCC 57.316 45.455 0.00 0.00 0.00 4.79
3106 4797 5.526479 GGAAACATTAATTACTCCCTCCGTC 59.474 44.000 0.00 0.00 0.00 4.79
3107 4798 5.191124 AGGAAACATTAATTACTCCCTCCGT 59.809 40.000 3.77 0.00 0.00 4.69
3108 4799 5.681639 AGGAAACATTAATTACTCCCTCCG 58.318 41.667 3.77 0.00 0.00 4.63
3109 4800 7.147355 ACCTAGGAAACATTAATTACTCCCTCC 60.147 40.741 17.98 0.00 0.00 4.30
3110 4801 7.715686 CACCTAGGAAACATTAATTACTCCCTC 59.284 40.741 17.98 0.00 0.00 4.30
3111 4802 7.184022 ACACCTAGGAAACATTAATTACTCCCT 59.816 37.037 17.98 0.00 0.00 4.20
3112 4803 7.344134 ACACCTAGGAAACATTAATTACTCCC 58.656 38.462 17.98 0.00 0.00 4.30
3118 4809 9.174166 GTGTGATACACCTAGGAAACATTAATT 57.826 33.333 17.98 0.00 43.05 1.40
3188 4880 9.528489 ACATAAAGGAACATCTTAAGGCTTTAA 57.472 29.630 4.45 0.70 0.00 1.52
3209 4901 7.975616 GCTAAGCATGAATGAAGGAAAACATAA 59.024 33.333 0.00 0.00 0.00 1.90
3251 5035 6.461788 GGCTGACCACCTTAGTCTTAAGATAG 60.462 46.154 8.75 6.82 36.09 2.08
3256 5040 3.244582 TGGCTGACCACCTTAGTCTTAA 58.755 45.455 0.00 0.00 42.67 1.85
3332 5116 3.555547 AGCTTTGCGTTTTGTTGGATTTC 59.444 39.130 0.00 0.00 0.00 2.17
3336 5120 2.266554 CAAGCTTTGCGTTTTGTTGGA 58.733 42.857 0.00 0.00 0.00 3.53
3337 5121 2.717524 CAAGCTTTGCGTTTTGTTGG 57.282 45.000 0.00 0.00 0.00 3.77
3436 5221 2.746279 ACAACCTTTGGTCATGGTCA 57.254 45.000 0.00 0.00 33.12 4.02
3521 5306 2.739913 GTTATGGCGTTCTGTGTGCTTA 59.260 45.455 0.00 0.00 0.00 3.09
3538 5323 1.999002 CGGGGTCCTGGTGGGTTAT 60.999 63.158 0.00 0.00 36.25 1.89
3929 5714 0.107703 TGAATCGGACCATGCCAGTC 60.108 55.000 0.00 0.00 0.00 3.51
3934 5719 1.493950 CGAGCTGAATCGGACCATGC 61.494 60.000 0.00 0.00 39.04 4.06
3942 5727 0.371645 GACTTTGCCGAGCTGAATCG 59.628 55.000 0.00 0.00 42.36 3.34
4006 5791 1.065709 TGTCGAGGAGCCCCAATTTAC 60.066 52.381 0.00 0.00 33.88 2.01
4136 5921 2.024414 GAAGTGCCTTTGCGGGATTAT 58.976 47.619 0.00 0.00 41.78 1.28
4170 5955 4.041691 AGGCTAGCATAATTACGGGTGATT 59.958 41.667 18.24 0.00 0.00 2.57
4173 5958 3.067106 CAGGCTAGCATAATTACGGGTG 58.933 50.000 18.24 0.00 0.00 4.61
4179 5964 5.381184 TGGTTTCCAGGCTAGCATAATTA 57.619 39.130 18.24 0.00 0.00 1.40
4201 5986 1.303317 GCCATGGTCGACCCTTGTT 60.303 57.895 31.19 8.58 36.79 2.83
4203 5988 2.819595 CGCCATGGTCGACCCTTG 60.820 66.667 31.19 25.81 37.96 3.61
4204 5989 4.778143 GCGCCATGGTCGACCCTT 62.778 66.667 31.19 16.42 34.29 3.95
4208 5993 3.799755 GTTGGCGCCATGGTCGAC 61.800 66.667 33.25 20.90 35.09 4.20
4262 6101 3.596066 CTGTGGTCTGGGTCGCCTG 62.596 68.421 0.00 0.00 0.00 4.85
4312 6151 1.143684 AGGGTTGATGTTGTGTGCTCT 59.856 47.619 0.00 0.00 0.00 4.09
4373 6212 2.595463 TTCCCGTCCGACGACACT 60.595 61.111 22.40 0.00 46.05 3.55
4424 6263 2.829384 GGTCCCTTGTGGCTGGTCA 61.829 63.158 0.00 0.00 0.00 4.02
4694 6722 6.950842 TGTCACAAGAGAGGTTGATATTGAT 58.049 36.000 0.00 0.00 0.00 2.57
4700 6728 3.755378 GCAATGTCACAAGAGAGGTTGAT 59.245 43.478 0.00 0.00 0.00 2.57
4701 6729 3.141398 GCAATGTCACAAGAGAGGTTGA 58.859 45.455 0.00 0.00 0.00 3.18
4702 6730 2.880268 TGCAATGTCACAAGAGAGGTTG 59.120 45.455 0.00 0.00 0.00 3.77
4967 7102 6.884280 AAAAGATAGTTGCACTAAGCTTGT 57.116 33.333 9.86 2.27 45.94 3.16
5071 7206 7.447430 CAACCAATTCATTGAAAAGCGTATTC 58.553 34.615 2.68 0.00 40.14 1.75
5076 7211 3.120580 GGCAACCAATTCATTGAAAAGCG 60.121 43.478 2.68 0.00 40.14 4.68
5163 7305 7.665559 AGAGGTAATTTGATTAAACTGACTGCA 59.334 33.333 0.00 0.00 0.00 4.41
5184 7326 0.684805 CCGTGCTCCTAGGAAGAGGT 60.685 60.000 13.77 0.00 37.88 3.85
6183 8345 2.339769 GGGGCCCTTAGTAGACATGAT 58.660 52.381 24.38 0.00 0.00 2.45
6226 8389 0.250513 AGCCGGTCCTGAGATTTCAC 59.749 55.000 1.90 0.00 0.00 3.18
6254 8417 2.456119 GCGCGTCTTGCTGCAGTAT 61.456 57.895 16.64 0.00 43.27 2.12
6342 8512 6.595326 AGAGCAAACGATTGAAATACATCAGA 59.405 34.615 9.88 0.00 38.94 3.27
6401 8571 5.659525 AGCACACTATTACAGTATGGGTGTA 59.340 40.000 10.59 0.00 43.62 2.90
6446 8616 9.313118 CAACCAATAAGTAAAGGATTATTTGCC 57.687 33.333 0.00 0.00 30.95 4.52
6563 8733 1.399727 GCAACGACCATGGAAAGAACG 60.400 52.381 21.47 15.06 0.00 3.95
6618 8788 9.547753 GTATGTCATTCTGGAAGTACATGTTAT 57.452 33.333 2.30 0.00 33.98 1.89
6620 8790 6.535150 CGTATGTCATTCTGGAAGTACATGTT 59.465 38.462 2.30 0.00 33.98 2.71
6918 9088 9.750783 AATACCTTCTCAGTAACTAAGACTACA 57.249 33.333 0.00 0.00 0.00 2.74
6971 9143 6.536224 GCAGTCAAATGGATTATCCCAAAAAG 59.464 38.462 8.98 0.00 40.04 2.27
7003 9175 5.544176 AGAGAAATAGGGAGAAGAACACACA 59.456 40.000 0.00 0.00 0.00 3.72
7210 9383 2.949177 TGTGCCCAGCCGAATATAAT 57.051 45.000 0.00 0.00 0.00 1.28
7228 9401 6.313411 TGGAAAACTGTTTTTGCTTCAAGATG 59.687 34.615 18.58 0.00 42.09 2.90
7425 9599 4.970662 AAGCAACGCATGAACAATAGAT 57.029 36.364 0.00 0.00 0.00 1.98
7439 9613 0.028374 AACCGAAACCGAAAGCAACG 59.972 50.000 0.00 0.00 0.00 4.10
7455 9629 7.604927 ACCTAACAACTTTTTCCAAAAGAAACC 59.395 33.333 14.46 0.00 44.20 3.27
7667 9849 1.372087 CCTCATTTGTCCGCTCTGCC 61.372 60.000 0.00 0.00 0.00 4.85
7693 9875 5.711506 TCTCACCAGTGATAAAACATGCAAT 59.288 36.000 0.04 0.00 39.13 3.56
7698 9880 5.195940 CCCATCTCACCAGTGATAAAACAT 58.804 41.667 0.04 0.00 39.13 2.71
7713 9895 1.064463 GGGAGAAATGCACCCATCTCA 60.064 52.381 16.84 0.00 45.87 3.27
7925 10115 5.071653 ACATGGTTAAGAAGCCCACAATTTT 59.928 36.000 0.00 0.00 0.00 1.82
7930 10120 2.969821 ACATGGTTAAGAAGCCCACA 57.030 45.000 0.00 0.00 0.00 4.17
7973 10163 4.137543 GAGCTGGGGGTAATTTGAGTATG 58.862 47.826 0.00 0.00 0.00 2.39
7986 10176 2.304056 ATGACTGGTGAGCTGGGGG 61.304 63.158 0.00 0.00 0.00 5.40
7987 10177 1.077930 CATGACTGGTGAGCTGGGG 60.078 63.158 0.00 0.00 0.00 4.96
8076 10268 2.743636 TTGACTTTAGGAGACAGGCG 57.256 50.000 0.00 0.00 31.86 5.52
8151 10343 1.669265 GTAAAGACCTAATGCACGGGC 59.331 52.381 0.34 0.34 41.68 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.