Multiple sequence alignment - TraesCS2B01G284600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G284600 chr2B 100.000 4640 0 0 1 4640 391776014 391771375 0.000000e+00 8569.0
1 TraesCS2B01G284600 chr2B 88.281 128 14 1 180 306 594024601 594024728 8.040000e-33 152.0
2 TraesCS2B01G284600 chr2B 94.828 58 3 0 2730 2787 391773219 391773162 1.780000e-14 91.6
3 TraesCS2B01G284600 chr2B 94.828 58 3 0 2796 2853 391773285 391773228 1.780000e-14 91.6
4 TraesCS2B01G284600 chr2D 95.040 3629 87 40 226 3796 323659318 323655725 0.000000e+00 5618.0
5 TraesCS2B01G284600 chr2D 88.454 537 50 6 3810 4339 323653394 323652863 5.060000e-179 638.0
6 TraesCS2B01G284600 chr2D 96.111 180 7 0 1 180 561360990 561361169 1.260000e-75 294.0
7 TraesCS2B01G284600 chr2D 94.262 122 6 1 4519 4640 323649775 323649655 7.930000e-43 185.0
8 TraesCS2B01G284600 chr2D 92.208 77 6 0 4440 4516 323651060 323650984 4.910000e-20 110.0
9 TraesCS2B01G284600 chr2D 94.828 58 3 0 2730 2787 323656755 323656698 1.780000e-14 91.6
10 TraesCS2B01G284600 chr2D 94.828 58 3 0 2796 2853 323656821 323656764 1.780000e-14 91.6
11 TraesCS2B01G284600 chr2A 91.349 3572 195 54 180 3679 406712189 406715718 0.000000e+00 4780.0
12 TraesCS2B01G284600 chr2A 93.855 179 11 0 2 180 446517472 446517294 2.130000e-68 270.0
13 TraesCS2B01G284600 chr2A 76.712 219 46 5 3912 4127 106803040 106803256 2.930000e-22 117.0
14 TraesCS2B01G284600 chr2A 93.478 46 3 0 3898 3943 624446107 624446152 8.330000e-08 69.4
15 TraesCS2B01G284600 chr3A 82.750 1200 171 20 1443 2639 739671807 739672973 0.000000e+00 1037.0
16 TraesCS2B01G284600 chr3A 83.959 293 41 5 1090 1381 739671494 739671781 4.570000e-70 276.0
17 TraesCS2B01G284600 chr3A 88.189 127 14 1 183 308 79889549 79889423 2.890000e-32 150.0
18 TraesCS2B01G284600 chr3D 84.146 984 145 10 1443 2422 607232644 607233620 0.000000e+00 942.0
19 TraesCS2B01G284600 chr3D 81.221 655 105 12 2850 3501 607233940 607234579 3.200000e-141 512.0
20 TraesCS2B01G284600 chr3D 85.034 294 38 5 1090 1382 607232331 607232619 1.260000e-75 294.0
21 TraesCS2B01G284600 chr6B 80.471 594 98 15 1121 1708 85855504 85856085 5.510000e-119 438.0
22 TraesCS2B01G284600 chr4B 98.889 180 2 0 1 180 31534923 31534744 5.790000e-84 322.0
23 TraesCS2B01G284600 chr4D 95.000 180 8 1 1 180 507765188 507765010 9.830000e-72 281.0
24 TraesCS2B01G284600 chr6A 94.444 180 10 0 1 180 560794024 560794203 1.270000e-70 278.0
25 TraesCS2B01G284600 chr6A 91.406 128 11 0 180 307 355289538 355289411 4.770000e-40 176.0
26 TraesCS2B01G284600 chr4A 94.444 180 10 0 1 180 656894137 656894316 1.270000e-70 278.0
27 TraesCS2B01G284600 chr1B 94.444 180 10 0 1 180 363563131 363562952 1.270000e-70 278.0
28 TraesCS2B01G284600 chr1B 89.231 130 13 1 180 308 112335898 112336027 1.340000e-35 161.0
29 TraesCS2B01G284600 chr7B 93.889 180 11 0 1 180 686918284 686918105 5.920000e-69 272.0
30 TraesCS2B01G284600 chr5D 93.889 180 7 1 1 180 128493526 128493701 7.650000e-68 268.0
31 TraesCS2B01G284600 chr6D 89.147 129 14 0 180 308 299223278 299223406 1.340000e-35 161.0
32 TraesCS2B01G284600 chr7D 87.692 130 15 1 180 308 637760211 637760082 2.890000e-32 150.0
33 TraesCS2B01G284600 chr5A 88.189 127 13 1 184 308 565008858 565008732 2.890000e-32 150.0
34 TraesCS2B01G284600 chr3B 79.602 201 27 10 3937 4132 167728300 167728109 1.050000e-26 132.0
35 TraesCS2B01G284600 chr7A 79.439 107 22 0 1460 1566 635380454 635380348 4.980000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G284600 chr2B 391771375 391776014 4639 True 2917.400000 8569 96.5520 1 4640 3 chr2B.!!$R1 4639
1 TraesCS2B01G284600 chr2D 323649655 323659318 9663 True 1122.366667 5618 93.2700 226 4640 6 chr2D.!!$R1 4414
2 TraesCS2B01G284600 chr2A 406712189 406715718 3529 False 4780.000000 4780 91.3490 180 3679 1 chr2A.!!$F2 3499
3 TraesCS2B01G284600 chr3A 739671494 739672973 1479 False 656.500000 1037 83.3545 1090 2639 2 chr3A.!!$F1 1549
4 TraesCS2B01G284600 chr3D 607232331 607234579 2248 False 582.666667 942 83.4670 1090 3501 3 chr3D.!!$F1 2411
5 TraesCS2B01G284600 chr6B 85855504 85856085 581 False 438.000000 438 80.4710 1121 1708 1 chr6B.!!$F1 587

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
358 360 0.031178 CGCCTATTTGCCTTCCATGC 59.969 55.0 0.0 0.0 0.0 4.06 F
1768 1831 0.458543 ACTACGCCAAGCTCATGACG 60.459 55.0 0.0 0.0 0.0 4.35 F
2424 2487 0.461548 CTCGTGAGCTATTGCCTGGA 59.538 55.0 0.0 0.0 40.8 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1873 1936 0.031585 TATTATTCACGAGGCGCGCT 59.968 50.0 32.29 17.27 46.04 5.92 R
2977 3154 0.175760 TCATGTTGCTCGTAGCCTCC 59.824 55.0 0.00 0.00 41.51 4.30 R
4346 6892 0.036671 CAGGGGTTACGAAGGACCAC 60.037 60.0 0.00 0.00 40.78 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.822036 TGGTTTGACAAATAGGACAACG 57.178 40.909 3.49 0.00 0.00 4.10
22 23 4.200874 TGGTTTGACAAATAGGACAACGT 58.799 39.130 3.49 0.00 0.00 3.99
23 24 4.273969 TGGTTTGACAAATAGGACAACGTC 59.726 41.667 3.49 0.00 0.00 4.34
24 25 4.273969 GGTTTGACAAATAGGACAACGTCA 59.726 41.667 3.49 0.00 33.68 4.35
25 26 5.048991 GGTTTGACAAATAGGACAACGTCAT 60.049 40.000 3.49 0.00 33.72 3.06
26 27 5.856126 TTGACAAATAGGACAACGTCATC 57.144 39.130 0.00 0.00 33.72 2.92
27 28 4.250464 TGACAAATAGGACAACGTCATCC 58.750 43.478 9.53 9.53 33.68 3.51
28 29 3.259064 ACAAATAGGACAACGTCATCCG 58.741 45.455 11.33 1.66 40.20 4.18
29 30 1.935933 AATAGGACAACGTCATCCGC 58.064 50.000 11.33 0.00 40.20 5.54
30 31 0.821517 ATAGGACAACGTCATCCGCA 59.178 50.000 11.33 5.46 40.20 5.69
31 32 0.604073 TAGGACAACGTCATCCGCAA 59.396 50.000 11.33 1.02 40.20 4.85
32 33 0.250124 AGGACAACGTCATCCGCAAA 60.250 50.000 11.33 0.00 40.20 3.68
33 34 0.165944 GGACAACGTCATCCGCAAAG 59.834 55.000 2.51 0.00 41.42 2.77
34 35 1.144969 GACAACGTCATCCGCAAAGA 58.855 50.000 0.00 0.00 41.42 2.52
35 36 1.529438 GACAACGTCATCCGCAAAGAA 59.471 47.619 0.00 0.00 41.42 2.52
36 37 2.151202 ACAACGTCATCCGCAAAGAAT 58.849 42.857 0.00 0.00 41.42 2.40
37 38 2.095768 ACAACGTCATCCGCAAAGAATG 60.096 45.455 0.00 0.00 41.42 2.67
38 39 2.093306 ACGTCATCCGCAAAGAATGA 57.907 45.000 0.00 0.00 41.42 2.57
39 40 2.632377 ACGTCATCCGCAAAGAATGAT 58.368 42.857 0.00 0.00 41.42 2.45
40 41 3.792401 ACGTCATCCGCAAAGAATGATA 58.208 40.909 0.00 0.00 41.42 2.15
41 42 3.804325 ACGTCATCCGCAAAGAATGATAG 59.196 43.478 0.00 0.00 41.42 2.08
42 43 3.804325 CGTCATCCGCAAAGAATGATAGT 59.196 43.478 0.00 0.00 0.00 2.12
43 44 4.084849 CGTCATCCGCAAAGAATGATAGTC 60.085 45.833 0.00 0.00 0.00 2.59
44 45 4.051237 TCATCCGCAAAGAATGATAGTCG 58.949 43.478 0.00 0.00 0.00 4.18
45 46 2.201732 TCCGCAAAGAATGATAGTCGC 58.798 47.619 0.00 0.00 0.00 5.19
46 47 2.159099 TCCGCAAAGAATGATAGTCGCT 60.159 45.455 0.00 0.00 0.00 4.93
47 48 2.609459 CCGCAAAGAATGATAGTCGCTT 59.391 45.455 0.00 0.00 0.00 4.68
48 49 3.302740 CCGCAAAGAATGATAGTCGCTTC 60.303 47.826 0.00 0.00 0.00 3.86
49 50 3.553511 CGCAAAGAATGATAGTCGCTTCT 59.446 43.478 0.00 0.00 0.00 2.85
50 51 4.317698 CGCAAAGAATGATAGTCGCTTCTC 60.318 45.833 0.00 0.00 0.00 2.87
51 52 4.025313 GCAAAGAATGATAGTCGCTTCTCC 60.025 45.833 0.00 0.00 0.00 3.71
52 53 5.111989 CAAAGAATGATAGTCGCTTCTCCA 58.888 41.667 0.00 0.00 0.00 3.86
53 54 5.543507 AAGAATGATAGTCGCTTCTCCAT 57.456 39.130 0.00 0.00 0.00 3.41
54 55 4.880759 AGAATGATAGTCGCTTCTCCATG 58.119 43.478 0.00 0.00 0.00 3.66
55 56 2.515926 TGATAGTCGCTTCTCCATGC 57.484 50.000 0.00 0.00 0.00 4.06
56 57 1.069204 TGATAGTCGCTTCTCCATGCC 59.931 52.381 0.00 0.00 0.00 4.40
57 58 0.394565 ATAGTCGCTTCTCCATGCCC 59.605 55.000 0.00 0.00 0.00 5.36
58 59 0.975556 TAGTCGCTTCTCCATGCCCA 60.976 55.000 0.00 0.00 0.00 5.36
59 60 2.109126 GTCGCTTCTCCATGCCCAC 61.109 63.158 0.00 0.00 0.00 4.61
60 61 2.046023 CGCTTCTCCATGCCCACA 60.046 61.111 0.00 0.00 0.00 4.17
61 62 2.110967 CGCTTCTCCATGCCCACAG 61.111 63.158 0.00 0.00 0.00 3.66
62 63 1.751927 GCTTCTCCATGCCCACAGG 60.752 63.158 0.00 0.00 0.00 4.00
74 75 4.025401 CACAGGCGCCAACGGTTC 62.025 66.667 31.54 0.00 40.57 3.62
77 78 4.344865 AGGCGCCAACGGTTCCAT 62.345 61.111 31.54 0.00 40.57 3.41
78 79 3.810896 GGCGCCAACGGTTCCATC 61.811 66.667 24.80 0.00 40.57 3.51
79 80 3.053291 GCGCCAACGGTTCCATCA 61.053 61.111 0.00 0.00 40.57 3.07
80 81 2.867472 CGCCAACGGTTCCATCAC 59.133 61.111 0.00 0.00 34.97 3.06
81 82 2.686816 CGCCAACGGTTCCATCACC 61.687 63.158 0.00 0.00 34.97 4.02
82 83 2.340328 GCCAACGGTTCCATCACCC 61.340 63.158 0.00 0.00 32.48 4.61
83 84 1.677633 CCAACGGTTCCATCACCCC 60.678 63.158 0.00 0.00 32.48 4.95
84 85 1.074072 CAACGGTTCCATCACCCCA 59.926 57.895 0.00 0.00 32.48 4.96
85 86 1.074248 AACGGTTCCATCACCCCAC 59.926 57.895 0.00 0.00 32.48 4.61
86 87 2.435938 CGGTTCCATCACCCCACG 60.436 66.667 0.00 0.00 32.48 4.94
87 88 2.045340 GGTTCCATCACCCCACGG 60.045 66.667 0.00 0.00 0.00 4.94
97 98 3.000819 CCCCACGGGTCACTGCTA 61.001 66.667 0.41 0.00 38.25 3.49
98 99 2.579201 CCCACGGGTCACTGCTAG 59.421 66.667 0.00 0.00 0.00 3.42
99 100 2.125512 CCACGGGTCACTGCTAGC 60.126 66.667 8.10 8.10 0.00 3.42
100 101 2.650116 CCACGGGTCACTGCTAGCT 61.650 63.158 17.23 0.00 0.00 3.32
101 102 1.446792 CACGGGTCACTGCTAGCTG 60.447 63.158 19.01 19.01 0.00 4.24
102 103 2.510238 CGGGTCACTGCTAGCTGC 60.510 66.667 20.35 5.46 43.25 5.25
114 115 1.001597 GCTAGCTGCATCATCCTTTGC 60.002 52.381 7.70 0.00 42.31 3.68
115 116 2.294979 CTAGCTGCATCATCCTTTGCA 58.705 47.619 1.02 0.00 46.03 4.08
116 117 1.776662 AGCTGCATCATCCTTTGCAT 58.223 45.000 1.02 0.00 46.87 3.96
117 118 1.681793 AGCTGCATCATCCTTTGCATC 59.318 47.619 1.02 0.00 46.87 3.91
118 119 1.599667 GCTGCATCATCCTTTGCATCG 60.600 52.381 0.00 0.00 46.87 3.84
119 120 1.001706 CTGCATCATCCTTTGCATCGG 60.002 52.381 0.00 0.00 46.87 4.18
120 121 0.318445 GCATCATCCTTTGCATCGGC 60.318 55.000 0.00 0.00 38.72 5.54
121 122 1.315690 CATCATCCTTTGCATCGGCT 58.684 50.000 0.00 0.00 41.91 5.52
122 123 1.266175 CATCATCCTTTGCATCGGCTC 59.734 52.381 0.00 0.00 41.91 4.70
123 124 0.464373 TCATCCTTTGCATCGGCTCC 60.464 55.000 0.00 0.00 41.91 4.70
124 125 0.749091 CATCCTTTGCATCGGCTCCA 60.749 55.000 0.00 0.00 41.91 3.86
125 126 0.184451 ATCCTTTGCATCGGCTCCAT 59.816 50.000 0.00 0.00 41.91 3.41
126 127 0.836606 TCCTTTGCATCGGCTCCATA 59.163 50.000 0.00 0.00 41.91 2.74
127 128 1.211703 TCCTTTGCATCGGCTCCATAA 59.788 47.619 0.00 0.00 41.91 1.90
128 129 2.158623 TCCTTTGCATCGGCTCCATAAT 60.159 45.455 0.00 0.00 41.91 1.28
129 130 2.624838 CCTTTGCATCGGCTCCATAATT 59.375 45.455 0.00 0.00 41.91 1.40
130 131 3.820467 CCTTTGCATCGGCTCCATAATTA 59.180 43.478 0.00 0.00 41.91 1.40
131 132 4.083110 CCTTTGCATCGGCTCCATAATTAG 60.083 45.833 0.00 0.00 41.91 1.73
132 133 4.350368 TTGCATCGGCTCCATAATTAGA 57.650 40.909 0.00 0.00 41.91 2.10
133 134 4.350368 TGCATCGGCTCCATAATTAGAA 57.650 40.909 0.00 0.00 41.91 2.10
134 135 4.910195 TGCATCGGCTCCATAATTAGAAT 58.090 39.130 0.00 0.00 41.91 2.40
135 136 4.696877 TGCATCGGCTCCATAATTAGAATG 59.303 41.667 0.00 0.00 41.91 2.67
136 137 4.937620 GCATCGGCTCCATAATTAGAATGA 59.062 41.667 0.00 0.00 36.96 2.57
137 138 5.412594 GCATCGGCTCCATAATTAGAATGAA 59.587 40.000 0.00 0.00 36.96 2.57
138 139 6.072508 GCATCGGCTCCATAATTAGAATGAAA 60.073 38.462 0.00 0.00 36.96 2.69
139 140 7.522073 GCATCGGCTCCATAATTAGAATGAAAA 60.522 37.037 0.00 0.00 36.96 2.29
140 141 7.496529 TCGGCTCCATAATTAGAATGAAAAG 57.503 36.000 0.00 0.00 0.00 2.27
141 142 6.017109 TCGGCTCCATAATTAGAATGAAAAGC 60.017 38.462 0.00 0.00 0.00 3.51
142 143 6.238731 CGGCTCCATAATTAGAATGAAAAGCA 60.239 38.462 0.00 0.00 31.47 3.91
143 144 7.522725 CGGCTCCATAATTAGAATGAAAAGCAT 60.523 37.037 0.00 0.00 39.43 3.79
145 146 8.975439 GCTCCATAATTAGAATGAAAAGCATTG 58.025 33.333 0.00 0.00 46.90 2.82
146 147 9.472361 CTCCATAATTAGAATGAAAAGCATTGG 57.528 33.333 0.00 0.00 46.90 3.16
147 148 8.423349 TCCATAATTAGAATGAAAAGCATTGGG 58.577 33.333 0.00 0.00 46.90 4.12
148 149 7.658575 CCATAATTAGAATGAAAAGCATTGGGG 59.341 37.037 0.00 0.00 46.90 4.96
149 150 6.872585 AATTAGAATGAAAAGCATTGGGGA 57.127 33.333 0.00 0.00 46.90 4.81
150 151 5.920193 TTAGAATGAAAAGCATTGGGGAG 57.080 39.130 0.00 0.00 46.90 4.30
151 152 4.051661 AGAATGAAAAGCATTGGGGAGA 57.948 40.909 0.00 0.00 46.90 3.71
152 153 4.617593 AGAATGAAAAGCATTGGGGAGAT 58.382 39.130 0.00 0.00 46.90 2.75
153 154 5.769835 AGAATGAAAAGCATTGGGGAGATA 58.230 37.500 0.00 0.00 46.90 1.98
154 155 5.832060 AGAATGAAAAGCATTGGGGAGATAG 59.168 40.000 0.00 0.00 46.90 2.08
155 156 3.902218 TGAAAAGCATTGGGGAGATAGG 58.098 45.455 0.00 0.00 0.00 2.57
156 157 3.527253 TGAAAAGCATTGGGGAGATAGGA 59.473 43.478 0.00 0.00 0.00 2.94
157 158 4.168675 TGAAAAGCATTGGGGAGATAGGAT 59.831 41.667 0.00 0.00 0.00 3.24
158 159 4.379302 AAAGCATTGGGGAGATAGGATC 57.621 45.455 0.00 0.00 0.00 3.36
159 160 2.273619 AGCATTGGGGAGATAGGATCC 58.726 52.381 2.48 2.48 35.99 3.36
166 167 0.988063 GGAGATAGGATCCCCTTGCC 59.012 60.000 8.55 1.12 40.78 4.52
167 168 0.610687 GAGATAGGATCCCCTTGCCG 59.389 60.000 8.55 0.00 40.78 5.69
168 169 0.104934 AGATAGGATCCCCTTGCCGT 60.105 55.000 8.55 0.00 40.78 5.68
169 170 1.149288 AGATAGGATCCCCTTGCCGTA 59.851 52.381 8.55 0.00 40.78 4.02
170 171 1.550976 GATAGGATCCCCTTGCCGTAG 59.449 57.143 8.55 0.00 40.78 3.51
171 172 1.119574 TAGGATCCCCTTGCCGTAGC 61.120 60.000 8.55 0.00 40.78 3.58
172 173 2.111251 GATCCCCTTGCCGTAGCC 59.889 66.667 0.00 0.00 38.69 3.93
173 174 3.477578 GATCCCCTTGCCGTAGCCC 62.478 68.421 0.00 0.00 38.69 5.19
174 175 4.733725 TCCCCTTGCCGTAGCCCT 62.734 66.667 0.00 0.00 38.69 5.19
175 176 3.728373 CCCCTTGCCGTAGCCCTT 61.728 66.667 0.00 0.00 38.69 3.95
176 177 2.355115 CCCTTGCCGTAGCCCTTT 59.645 61.111 0.00 0.00 38.69 3.11
177 178 2.046285 CCCTTGCCGTAGCCCTTTG 61.046 63.158 0.00 0.00 38.69 2.77
178 179 2.700773 CCTTGCCGTAGCCCTTTGC 61.701 63.158 0.00 0.00 38.69 3.68
182 183 1.971695 GCCGTAGCCCTTTGCAACT 60.972 57.895 0.00 0.00 44.83 3.16
246 248 3.144506 ACCGTGGACGTCTATATCGATT 58.855 45.455 16.46 0.00 37.74 3.34
252 254 6.487960 GTGGACGTCTATATCGATTCCTATG 58.512 44.000 16.46 0.00 0.00 2.23
262 264 2.623416 TCGATTCCTATGAGCACACGAT 59.377 45.455 0.00 0.00 0.00 3.73
278 280 5.008019 GCACACGATTGATATTGGAGTGAAT 59.992 40.000 0.00 0.00 31.84 2.57
309 311 2.557924 TCATGTGATGTTCCCTTTGCAC 59.442 45.455 0.00 0.00 0.00 4.57
336 338 2.483538 GGCTTTATTTTGGCCGCATCAT 60.484 45.455 0.00 0.00 36.37 2.45
342 344 1.514678 TTTGGCCGCATCATATCGCC 61.515 55.000 0.00 0.00 0.00 5.54
353 355 4.437930 GCATCATATCGCCTATTTGCCTTC 60.438 45.833 0.00 0.00 0.00 3.46
354 356 3.674997 TCATATCGCCTATTTGCCTTCC 58.325 45.455 0.00 0.00 0.00 3.46
355 357 3.072330 TCATATCGCCTATTTGCCTTCCA 59.928 43.478 0.00 0.00 0.00 3.53
356 358 2.664402 ATCGCCTATTTGCCTTCCAT 57.336 45.000 0.00 0.00 0.00 3.41
358 360 0.031178 CGCCTATTTGCCTTCCATGC 59.969 55.000 0.00 0.00 0.00 4.06
359 361 0.031178 GCCTATTTGCCTTCCATGCG 59.969 55.000 0.00 0.00 0.00 4.73
361 363 1.334869 CCTATTTGCCTTCCATGCGTC 59.665 52.381 0.00 0.00 0.00 5.19
366 376 3.781307 CCTTCCATGCGTCCCCGA 61.781 66.667 0.00 0.00 35.63 5.14
399 409 0.460284 ACTTCCATGCGTCCGCTTAG 60.460 55.000 13.31 4.09 42.51 2.18
409 419 1.090052 GTCCGCTTAGCCGCATCTTT 61.090 55.000 0.00 0.00 0.00 2.52
414 424 3.496884 CCGCTTAGCCGCATCTTTATTTA 59.503 43.478 0.00 0.00 0.00 1.40
479 493 5.488341 AGTGTCTAACTTGTGACTTGTTGT 58.512 37.500 4.58 0.00 34.57 3.32
595 623 2.172679 AGACACCATTTGATGCATGCA 58.827 42.857 25.04 25.04 0.00 3.96
631 662 4.402192 GCAATCTGCATGCTGCTG 57.598 55.556 20.33 18.16 45.31 4.41
666 700 6.267817 TGTTTCTTTCTTTCTGCAAGTGATG 58.732 36.000 0.00 0.00 33.66 3.07
797 831 5.164119 GCGAATTTTCTTTTGAGCACATGAG 60.164 40.000 0.00 0.00 0.00 2.90
805 839 2.685850 TGAGCACATGAGATGGACTG 57.314 50.000 0.00 0.00 33.60 3.51
917 955 2.263540 CGTCGGTCGACCCCATTT 59.736 61.111 28.52 0.00 41.76 2.32
929 967 2.562298 GACCCCATTTCATTTGCACTCA 59.438 45.455 0.00 0.00 0.00 3.41
930 968 2.299867 ACCCCATTTCATTTGCACTCAC 59.700 45.455 0.00 0.00 0.00 3.51
941 982 5.774690 TCATTTGCACTCACCTTCCTATTTT 59.225 36.000 0.00 0.00 0.00 1.82
949 990 6.940298 CACTCACCTTCCTATTTTAAGGACAA 59.060 38.462 8.06 0.00 45.49 3.18
952 993 5.710099 CACCTTCCTATTTTAAGGACAAGCA 59.290 40.000 8.06 0.00 45.49 3.91
953 994 5.946377 ACCTTCCTATTTTAAGGACAAGCAG 59.054 40.000 8.06 0.00 45.49 4.24
954 995 5.946377 CCTTCCTATTTTAAGGACAAGCAGT 59.054 40.000 0.00 0.00 45.49 4.40
996 1037 5.598005 AGCTTACTCTACTCTAGTCGGAGTA 59.402 44.000 15.67 15.67 43.76 2.59
1001 1042 6.129179 ACTCTACTCTAGTCGGAGTACTAGT 58.871 44.000 13.48 0.00 46.07 2.57
1004 1045 8.526667 TCTACTCTAGTCGGAGTACTAGTTTA 57.473 38.462 0.00 3.76 46.07 2.01
1008 1049 8.317679 ACTCTAGTCGGAGTACTAGTTTAAAGA 58.682 37.037 0.00 0.00 46.07 2.52
1219 1273 5.331906 CTCTTCCTCCAGATGATCCTCATA 58.668 45.833 0.62 0.00 37.20 2.15
1768 1831 0.458543 ACTACGCCAAGCTCATGACG 60.459 55.000 0.00 0.00 0.00 4.35
1787 1850 1.585006 GAGTTCGACGCCAAGGAGA 59.415 57.895 0.00 0.00 0.00 3.71
1849 1912 1.966451 CGACGCCAAGAAAGCCCTT 60.966 57.895 0.00 0.00 0.00 3.95
1873 1936 2.665000 CTTGAGGAAGGCGAGGCA 59.335 61.111 0.00 0.00 0.00 4.75
1896 1959 1.864711 GCGCCTCGTGAATAATAGCAA 59.135 47.619 0.00 0.00 0.00 3.91
2424 2487 0.461548 CTCGTGAGCTATTGCCTGGA 59.538 55.000 0.00 0.00 40.80 3.86
2837 3014 1.208052 CGAAAGAGAAGGAGGCCATCA 59.792 52.381 5.01 0.00 0.00 3.07
3183 3360 2.124983 GCGGAGGATGCTGCTGAA 60.125 61.111 3.89 0.00 37.20 3.02
3229 3406 2.426023 GTGAAGGGCGACAGGTGT 59.574 61.111 0.00 0.00 0.00 4.16
3427 3604 1.452651 CTGGTTCCTCATGGCGCAT 60.453 57.895 10.83 0.00 0.00 4.73
3563 3755 4.197750 CTGCTTGGCTTTATCATCTCTGT 58.802 43.478 0.00 0.00 0.00 3.41
3644 3836 5.860941 TCCAACAATTTGCAAGGAGTAAA 57.139 34.783 0.00 0.00 36.25 2.01
3683 3875 5.483937 TCTTCAAGAATGTGTCTAGGGCTAA 59.516 40.000 0.00 0.00 34.56 3.09
3687 3909 6.611642 TCAAGAATGTGTCTAGGGCTAAGTAT 59.388 38.462 0.00 0.00 34.56 2.12
3698 3920 7.868415 GTCTAGGGCTAAGTATTGTTAGACATG 59.132 40.741 0.00 0.00 39.52 3.21
3702 3924 6.424207 GGGCTAAGTATTGTTAGACATGTAGC 59.576 42.308 0.00 0.00 39.52 3.58
3706 3928 6.887376 AGTATTGTTAGACATGTAGCGTTG 57.113 37.500 0.00 0.00 0.00 4.10
3710 3932 2.734276 TAGACATGTAGCGTTGCACA 57.266 45.000 0.00 0.00 0.00 4.57
3771 3993 7.147983 CCCTTAAACCTCTCGATCTATCCTATG 60.148 44.444 0.00 0.00 0.00 2.23
3796 4018 1.364171 CCTAGCGATCGGGTCTTGG 59.636 63.158 18.30 11.75 0.00 3.61
3797 4019 1.107538 CCTAGCGATCGGGTCTTGGA 61.108 60.000 18.30 0.00 0.00 3.53
3798 4020 0.030908 CTAGCGATCGGGTCTTGGAC 59.969 60.000 18.30 0.00 0.00 4.02
3799 4021 1.721664 TAGCGATCGGGTCTTGGACG 61.722 60.000 18.30 0.00 32.65 4.79
3800 4022 2.582498 CGATCGGGTCTTGGACGC 60.582 66.667 7.38 4.93 41.19 5.19
3805 4027 4.699522 GGGTCTTGGACGCGGCTT 62.700 66.667 13.91 0.00 35.92 4.35
3806 4028 2.668550 GGTCTTGGACGCGGCTTT 60.669 61.111 13.91 0.00 32.65 3.51
3807 4029 2.258726 GGTCTTGGACGCGGCTTTT 61.259 57.895 13.91 0.00 32.65 2.27
3808 4030 1.652563 GTCTTGGACGCGGCTTTTT 59.347 52.632 13.91 0.00 0.00 1.94
3822 6361 3.058914 CGGCTTTTTGGAGTGAACAGTAG 60.059 47.826 0.00 0.00 0.00 2.57
3826 6365 6.374578 GCTTTTTGGAGTGAACAGTAGATTC 58.625 40.000 0.00 0.00 0.00 2.52
3830 6369 5.970317 TGGAGTGAACAGTAGATTCGTTA 57.030 39.130 0.00 0.00 0.00 3.18
3884 6429 3.688185 TCTGATGAAAGATGCTTGAGTGC 59.312 43.478 0.00 0.00 0.00 4.40
3885 6430 2.751259 TGATGAAAGATGCTTGAGTGCC 59.249 45.455 0.00 0.00 0.00 5.01
3889 6434 1.818642 AAGATGCTTGAGTGCCTGAC 58.181 50.000 0.00 0.00 0.00 3.51
3893 6438 0.463654 TGCTTGAGTGCCTGACGTTT 60.464 50.000 0.00 0.00 0.00 3.60
3907 6452 3.443037 TGACGTTTGTGCCAAATTTCTG 58.557 40.909 0.00 0.00 0.00 3.02
3925 6470 5.787953 TTCTGAGCATTTGGACATTTGAA 57.212 34.783 0.00 0.00 0.00 2.69
3931 6476 6.071221 TGAGCATTTGGACATTTGAATAGCTT 60.071 34.615 0.00 0.00 0.00 3.74
3935 6480 7.412237 GCATTTGGACATTTGAATAGCTTTCAC 60.412 37.037 9.83 1.34 0.00 3.18
3974 6519 4.507388 TCGGGTACGTGAAAAAGTTTACTG 59.493 41.667 0.00 0.00 41.85 2.74
3975 6520 4.270808 CGGGTACGTGAAAAAGTTTACTGT 59.729 41.667 0.00 0.00 34.81 3.55
3976 6521 5.220643 CGGGTACGTGAAAAAGTTTACTGTT 60.221 40.000 0.00 0.00 34.81 3.16
3977 6522 6.554419 GGGTACGTGAAAAAGTTTACTGTTT 58.446 36.000 0.00 0.00 36.18 2.83
3978 6523 7.028962 GGGTACGTGAAAAAGTTTACTGTTTT 58.971 34.615 0.00 2.26 33.75 2.43
3979 6524 7.008538 GGGTACGTGAAAAAGTTTACTGTTTTG 59.991 37.037 0.00 0.00 33.75 2.44
3980 6525 7.538334 GGTACGTGAAAAAGTTTACTGTTTTGT 59.462 33.333 0.00 3.07 33.75 2.83
3984 6529 9.879973 CGTGAAAAAGTTTACTGTTTTGTATTG 57.120 29.630 0.00 0.00 33.75 1.90
3992 6537 8.671028 AGTTTACTGTTTTGTATTGTTCGAACT 58.329 29.630 27.32 12.18 0.00 3.01
4010 6555 9.952341 GTTCGAACTTGATTTATTTATTTTGCC 57.048 29.630 20.97 0.00 0.00 4.52
4049 6594 1.001487 TGAATGTGCTGAAACTTGCCG 60.001 47.619 0.00 0.00 0.00 5.69
4059 6604 0.960364 AAACTTGCCGCGGACATCAT 60.960 50.000 33.48 11.60 0.00 2.45
4062 6607 1.153188 TTGCCGCGGACATCATCAT 60.153 52.632 33.48 0.00 0.00 2.45
4072 6617 4.454847 GCGGACATCATCATTCAATCATCT 59.545 41.667 0.00 0.00 0.00 2.90
4139 6684 8.804688 TTATTTTGATTTTACTGTCCGGTTTG 57.195 30.769 0.00 0.00 0.00 2.93
4143 6688 2.335316 TTTACTGTCCGGTTTGCAGT 57.665 45.000 20.47 20.47 0.00 4.40
4164 6710 4.740822 GGTGGAGCGGTGGCCAAT 62.741 66.667 7.24 0.00 41.24 3.16
4179 6725 4.460683 AATCCGCCGCGCCAAGTA 62.461 61.111 7.42 0.00 0.00 2.24
4189 6735 0.669625 GCGCCAAGTAGTTTCGTCCT 60.670 55.000 0.00 0.00 0.00 3.85
4195 6741 1.515736 GTAGTTTCGTCCTCGGCGG 60.516 63.158 7.21 0.00 37.69 6.13
4213 6759 2.887568 CGATGTGCTCTGGTCGGC 60.888 66.667 0.00 0.00 0.00 5.54
4220 6766 3.114616 CTCTGGTCGGCGTTGCAG 61.115 66.667 6.85 0.00 0.00 4.41
4262 6808 4.965814 TGCAATCTATCCTCATGACTTCC 58.034 43.478 0.00 0.00 0.00 3.46
4263 6809 3.993081 GCAATCTATCCTCATGACTTCCG 59.007 47.826 0.00 0.00 0.00 4.30
4264 6810 4.564041 CAATCTATCCTCATGACTTCCGG 58.436 47.826 0.00 0.00 0.00 5.14
4330 6876 4.402155 GGGTCCTCATGTAAATTGCAATCA 59.598 41.667 13.38 7.09 0.00 2.57
4339 6885 8.198778 TCATGTAAATTGCAATCACATGCTTAT 58.801 29.630 35.16 18.27 46.54 1.73
4340 6886 7.990541 TGTAAATTGCAATCACATGCTTATC 57.009 32.000 13.38 2.45 46.54 1.75
4341 6887 7.774134 TGTAAATTGCAATCACATGCTTATCT 58.226 30.769 13.38 0.00 46.54 1.98
4345 6891 8.812147 AATTGCAATCACATGCTTATCTAATG 57.188 30.769 13.38 0.00 46.54 1.90
4346 6892 6.321848 TGCAATCACATGCTTATCTAATGG 57.678 37.500 0.00 0.00 46.54 3.16
4347 6893 5.829391 TGCAATCACATGCTTATCTAATGGT 59.171 36.000 0.00 0.00 46.54 3.55
4348 6894 6.147581 GCAATCACATGCTTATCTAATGGTG 58.852 40.000 0.00 0.00 43.06 4.17
4349 6895 6.675026 CAATCACATGCTTATCTAATGGTGG 58.325 40.000 0.00 0.00 0.00 4.61
4350 6896 5.372343 TCACATGCTTATCTAATGGTGGT 57.628 39.130 0.00 0.00 0.00 4.16
4352 6898 4.516698 CACATGCTTATCTAATGGTGGTCC 59.483 45.833 0.00 0.00 0.00 4.46
4353 6899 4.413520 ACATGCTTATCTAATGGTGGTCCT 59.586 41.667 0.00 0.00 34.23 3.85
4365 7666 0.036671 GTGGTCCTTCGTAACCCCTG 60.037 60.000 0.00 0.00 34.47 4.45
4418 7721 9.944663 TTTCTTTCAATAACACTCAACATACAC 57.055 29.630 0.00 0.00 0.00 2.90
4478 8728 4.280436 ACCCACAATCGTTCAACATAGA 57.720 40.909 0.00 0.00 0.00 1.98
4486 8736 8.227119 CACAATCGTTCAACATAGAAACATACA 58.773 33.333 0.00 0.00 0.00 2.29
4491 8741 7.386573 TCGTTCAACATAGAAACATACACACAT 59.613 33.333 0.00 0.00 0.00 3.21
4493 8743 8.503196 GTTCAACATAGAAACATACACACATCA 58.497 33.333 0.00 0.00 0.00 3.07
4516 8766 2.218603 CGGGACACAACTAAAACAGCT 58.781 47.619 0.00 0.00 0.00 4.24
4517 8767 2.032030 CGGGACACAACTAAAACAGCTG 60.032 50.000 13.48 13.48 0.00 4.24
4518 8768 2.293399 GGGACACAACTAAAACAGCTGG 59.707 50.000 19.93 1.54 0.00 4.85
4520 8770 2.357637 GACACAACTAAAACAGCTGGCA 59.642 45.455 19.93 0.00 0.00 4.92
4521 8771 2.757868 ACACAACTAAAACAGCTGGCAA 59.242 40.909 19.93 0.00 0.00 4.52
4523 8773 4.180057 CACAACTAAAACAGCTGGCAAAA 58.820 39.130 19.93 0.00 0.00 2.44
4524 8774 4.629200 CACAACTAAAACAGCTGGCAAAAA 59.371 37.500 19.93 0.00 0.00 1.94
4525 8775 4.869861 ACAACTAAAACAGCTGGCAAAAAG 59.130 37.500 19.93 9.77 0.00 2.27
4526 8776 5.108517 CAACTAAAACAGCTGGCAAAAAGA 58.891 37.500 19.93 0.00 0.00 2.52
4527 8777 5.535753 ACTAAAACAGCTGGCAAAAAGAT 57.464 34.783 19.93 0.00 0.00 2.40
4537 9993 5.009010 AGCTGGCAAAAAGATATGAATACGG 59.991 40.000 0.00 0.00 0.00 4.02
4572 10028 2.721090 GCGACAAGATCAACAAGTTTGC 59.279 45.455 0.00 0.00 0.00 3.68
4580 10036 6.500684 AGATCAACAAGTTTGCACGAATAT 57.499 33.333 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.200874 ACGTTGTCCTATTTGTCAAACCA 58.799 39.130 0.00 0.00 0.00 3.67
1 2 4.273969 TGACGTTGTCCTATTTGTCAAACC 59.726 41.667 0.00 0.00 33.79 3.27
3 4 5.180492 GGATGACGTTGTCCTATTTGTCAAA 59.820 40.000 11.64 0.00 39.49 2.69
5 6 4.250464 GGATGACGTTGTCCTATTTGTCA 58.750 43.478 11.64 0.00 40.24 3.58
6 7 3.306166 CGGATGACGTTGTCCTATTTGTC 59.694 47.826 15.47 0.00 37.93 3.18
7 8 3.259064 CGGATGACGTTGTCCTATTTGT 58.741 45.455 15.47 0.00 37.93 2.83
8 9 2.030457 GCGGATGACGTTGTCCTATTTG 59.970 50.000 15.47 4.02 46.52 2.32
9 10 2.277084 GCGGATGACGTTGTCCTATTT 58.723 47.619 15.47 0.00 46.52 1.40
10 11 1.206132 TGCGGATGACGTTGTCCTATT 59.794 47.619 15.47 0.00 46.52 1.73
11 12 0.821517 TGCGGATGACGTTGTCCTAT 59.178 50.000 15.47 0.00 46.52 2.57
12 13 0.604073 TTGCGGATGACGTTGTCCTA 59.396 50.000 15.47 4.86 46.52 2.94
13 14 0.250124 TTTGCGGATGACGTTGTCCT 60.250 50.000 15.47 0.00 46.52 3.85
14 15 0.165944 CTTTGCGGATGACGTTGTCC 59.834 55.000 9.45 9.45 46.52 4.02
15 16 1.144969 TCTTTGCGGATGACGTTGTC 58.855 50.000 0.00 0.00 46.52 3.18
16 17 1.588674 TTCTTTGCGGATGACGTTGT 58.411 45.000 0.00 0.00 46.52 3.32
17 18 2.159430 TCATTCTTTGCGGATGACGTTG 59.841 45.455 0.00 0.00 46.52 4.10
18 19 2.422597 TCATTCTTTGCGGATGACGTT 58.577 42.857 0.00 0.00 46.52 3.99
19 20 2.093306 TCATTCTTTGCGGATGACGT 57.907 45.000 0.00 0.00 46.52 4.34
21 22 4.084849 CGACTATCATTCTTTGCGGATGAC 60.085 45.833 0.00 0.00 0.00 3.06
22 23 4.051237 CGACTATCATTCTTTGCGGATGA 58.949 43.478 0.00 0.00 0.00 2.92
23 24 3.363378 GCGACTATCATTCTTTGCGGATG 60.363 47.826 0.00 0.00 0.00 3.51
24 25 2.802816 GCGACTATCATTCTTTGCGGAT 59.197 45.455 0.00 0.00 0.00 4.18
25 26 2.159099 AGCGACTATCATTCTTTGCGGA 60.159 45.455 0.00 0.00 0.00 5.54
26 27 2.205074 AGCGACTATCATTCTTTGCGG 58.795 47.619 0.00 0.00 0.00 5.69
27 28 3.553511 AGAAGCGACTATCATTCTTTGCG 59.446 43.478 0.00 0.00 0.00 4.85
28 29 4.025313 GGAGAAGCGACTATCATTCTTTGC 60.025 45.833 0.00 0.00 32.31 3.68
29 30 5.111989 TGGAGAAGCGACTATCATTCTTTG 58.888 41.667 0.00 0.00 32.31 2.77
30 31 5.344743 TGGAGAAGCGACTATCATTCTTT 57.655 39.130 0.00 0.00 32.31 2.52
31 32 5.295950 CATGGAGAAGCGACTATCATTCTT 58.704 41.667 0.00 0.00 32.31 2.52
32 33 4.798924 GCATGGAGAAGCGACTATCATTCT 60.799 45.833 0.00 0.00 34.78 2.40
33 34 3.431572 GCATGGAGAAGCGACTATCATTC 59.568 47.826 0.00 0.00 0.00 2.67
34 35 3.397482 GCATGGAGAAGCGACTATCATT 58.603 45.455 0.00 0.00 0.00 2.57
35 36 2.289320 GGCATGGAGAAGCGACTATCAT 60.289 50.000 0.00 0.00 0.00 2.45
36 37 1.069204 GGCATGGAGAAGCGACTATCA 59.931 52.381 0.00 0.00 0.00 2.15
37 38 1.606737 GGGCATGGAGAAGCGACTATC 60.607 57.143 0.00 0.00 0.00 2.08
38 39 0.394565 GGGCATGGAGAAGCGACTAT 59.605 55.000 0.00 0.00 0.00 2.12
39 40 0.975556 TGGGCATGGAGAAGCGACTA 60.976 55.000 0.00 0.00 0.00 2.59
40 41 2.293318 TGGGCATGGAGAAGCGACT 61.293 57.895 0.00 0.00 0.00 4.18
41 42 2.109126 GTGGGCATGGAGAAGCGAC 61.109 63.158 0.00 0.00 0.00 5.19
42 43 2.268920 GTGGGCATGGAGAAGCGA 59.731 61.111 0.00 0.00 0.00 4.93
43 44 2.046023 TGTGGGCATGGAGAAGCG 60.046 61.111 0.00 0.00 0.00 4.68
44 45 1.751927 CCTGTGGGCATGGAGAAGC 60.752 63.158 0.00 0.00 0.00 3.86
45 46 4.651867 CCTGTGGGCATGGAGAAG 57.348 61.111 0.00 0.00 0.00 2.85
57 58 4.025401 GAACCGTTGGCGCCTGTG 62.025 66.667 29.70 16.40 36.67 3.66
60 61 4.344865 ATGGAACCGTTGGCGCCT 62.345 61.111 29.70 5.42 36.67 5.52
61 62 3.810896 GATGGAACCGTTGGCGCC 61.811 66.667 22.73 22.73 36.67 6.53
62 63 3.053291 TGATGGAACCGTTGGCGC 61.053 61.111 0.00 0.00 36.67 6.53
63 64 2.686816 GGTGATGGAACCGTTGGCG 61.687 63.158 0.00 0.00 37.95 5.69
64 65 2.340328 GGGTGATGGAACCGTTGGC 61.340 63.158 0.00 0.00 41.52 4.52
65 66 1.677633 GGGGTGATGGAACCGTTGG 60.678 63.158 0.00 0.00 41.52 3.77
66 67 1.074072 TGGGGTGATGGAACCGTTG 59.926 57.895 0.00 0.00 41.52 4.10
67 68 1.074248 GTGGGGTGATGGAACCGTT 59.926 57.895 0.00 0.00 41.52 4.44
68 69 2.754375 GTGGGGTGATGGAACCGT 59.246 61.111 0.00 0.00 41.52 4.83
69 70 2.435938 CGTGGGGTGATGGAACCG 60.436 66.667 0.00 0.00 41.52 4.44
70 71 2.045340 CCGTGGGGTGATGGAACC 60.045 66.667 0.00 0.00 39.71 3.62
71 72 2.045340 CCCGTGGGGTGATGGAAC 60.045 66.667 0.00 0.00 38.25 3.62
81 82 2.579201 CTAGCAGTGACCCGTGGG 59.421 66.667 2.58 2.58 42.03 4.61
82 83 2.125512 GCTAGCAGTGACCCGTGG 60.126 66.667 10.63 0.00 0.00 4.94
83 84 1.446792 CAGCTAGCAGTGACCCGTG 60.447 63.158 18.83 0.00 0.00 4.94
84 85 2.973899 CAGCTAGCAGTGACCCGT 59.026 61.111 18.83 0.00 0.00 5.28
85 86 2.510238 GCAGCTAGCAGTGACCCG 60.510 66.667 18.83 0.00 44.79 5.28
94 95 1.001597 GCAAAGGATGATGCAGCTAGC 60.002 52.381 6.62 6.62 42.12 3.42
95 96 2.294979 TGCAAAGGATGATGCAGCTAG 58.705 47.619 2.53 0.00 46.87 3.42
96 97 2.423446 TGCAAAGGATGATGCAGCTA 57.577 45.000 2.53 0.00 46.87 3.32
97 98 3.276281 TGCAAAGGATGATGCAGCT 57.724 47.368 2.53 0.00 46.87 4.24
101 102 0.318445 GCCGATGCAAAGGATGATGC 60.318 55.000 14.18 0.00 42.86 3.91
102 103 1.266175 GAGCCGATGCAAAGGATGATG 59.734 52.381 14.18 0.00 41.13 3.07
103 104 1.602311 GAGCCGATGCAAAGGATGAT 58.398 50.000 14.18 0.00 41.13 2.45
104 105 0.464373 GGAGCCGATGCAAAGGATGA 60.464 55.000 14.18 0.00 41.13 2.92
105 106 0.749091 TGGAGCCGATGCAAAGGATG 60.749 55.000 14.18 0.00 41.13 3.51
106 107 0.184451 ATGGAGCCGATGCAAAGGAT 59.816 50.000 14.18 8.10 41.13 3.24
107 108 0.836606 TATGGAGCCGATGCAAAGGA 59.163 50.000 14.18 0.00 41.13 3.36
108 109 1.679139 TTATGGAGCCGATGCAAAGG 58.321 50.000 6.46 6.46 41.13 3.11
109 110 3.996150 AATTATGGAGCCGATGCAAAG 57.004 42.857 0.00 0.00 41.13 2.77
110 111 4.713553 TCTAATTATGGAGCCGATGCAAA 58.286 39.130 0.00 0.00 41.13 3.68
111 112 4.350368 TCTAATTATGGAGCCGATGCAA 57.650 40.909 0.00 0.00 41.13 4.08
112 113 4.350368 TTCTAATTATGGAGCCGATGCA 57.650 40.909 0.00 0.00 41.13 3.96
113 114 4.937620 TCATTCTAATTATGGAGCCGATGC 59.062 41.667 0.00 0.00 37.95 3.91
114 115 7.439157 TTTCATTCTAATTATGGAGCCGATG 57.561 36.000 0.00 0.00 0.00 3.84
115 116 7.308830 GCTTTTCATTCTAATTATGGAGCCGAT 60.309 37.037 0.00 0.00 0.00 4.18
116 117 6.017109 GCTTTTCATTCTAATTATGGAGCCGA 60.017 38.462 0.00 0.00 0.00 5.54
117 118 6.145535 GCTTTTCATTCTAATTATGGAGCCG 58.854 40.000 0.00 0.00 0.00 5.52
118 119 7.042797 TGCTTTTCATTCTAATTATGGAGCC 57.957 36.000 0.00 0.00 0.00 4.70
119 120 8.975439 CAATGCTTTTCATTCTAATTATGGAGC 58.025 33.333 0.00 0.00 43.21 4.70
120 121 9.472361 CCAATGCTTTTCATTCTAATTATGGAG 57.528 33.333 0.00 0.00 43.21 3.86
121 122 8.423349 CCCAATGCTTTTCATTCTAATTATGGA 58.577 33.333 0.00 0.00 43.21 3.41
122 123 7.658575 CCCCAATGCTTTTCATTCTAATTATGG 59.341 37.037 0.00 0.00 43.21 2.74
123 124 8.423349 TCCCCAATGCTTTTCATTCTAATTATG 58.577 33.333 0.00 0.00 43.21 1.90
124 125 8.551682 TCCCCAATGCTTTTCATTCTAATTAT 57.448 30.769 0.00 0.00 43.21 1.28
125 126 7.838696 TCTCCCCAATGCTTTTCATTCTAATTA 59.161 33.333 0.00 0.00 43.21 1.40
126 127 6.669154 TCTCCCCAATGCTTTTCATTCTAATT 59.331 34.615 0.00 0.00 43.21 1.40
127 128 6.197168 TCTCCCCAATGCTTTTCATTCTAAT 58.803 36.000 0.00 0.00 43.21 1.73
128 129 5.579047 TCTCCCCAATGCTTTTCATTCTAA 58.421 37.500 0.00 0.00 43.21 2.10
129 130 5.191727 TCTCCCCAATGCTTTTCATTCTA 57.808 39.130 0.00 0.00 43.21 2.10
130 131 4.051661 TCTCCCCAATGCTTTTCATTCT 57.948 40.909 0.00 0.00 43.21 2.40
131 132 5.010415 CCTATCTCCCCAATGCTTTTCATTC 59.990 44.000 0.00 0.00 43.21 2.67
132 133 4.897670 CCTATCTCCCCAATGCTTTTCATT 59.102 41.667 0.00 0.00 45.82 2.57
133 134 4.168675 TCCTATCTCCCCAATGCTTTTCAT 59.831 41.667 0.00 0.00 36.87 2.57
134 135 3.527253 TCCTATCTCCCCAATGCTTTTCA 59.473 43.478 0.00 0.00 0.00 2.69
135 136 4.170468 TCCTATCTCCCCAATGCTTTTC 57.830 45.455 0.00 0.00 0.00 2.29
136 137 4.448347 GGATCCTATCTCCCCAATGCTTTT 60.448 45.833 3.84 0.00 0.00 2.27
137 138 3.075134 GGATCCTATCTCCCCAATGCTTT 59.925 47.826 3.84 0.00 0.00 3.51
138 139 2.646798 GGATCCTATCTCCCCAATGCTT 59.353 50.000 3.84 0.00 0.00 3.91
139 140 2.273619 GGATCCTATCTCCCCAATGCT 58.726 52.381 3.84 0.00 0.00 3.79
140 141 1.283321 GGGATCCTATCTCCCCAATGC 59.717 57.143 12.58 0.00 45.80 3.56
148 149 0.610687 CGGCAAGGGGATCCTATCTC 59.389 60.000 12.58 0.00 44.07 2.75
149 150 0.104934 ACGGCAAGGGGATCCTATCT 60.105 55.000 12.58 4.38 44.07 1.98
150 151 1.550976 CTACGGCAAGGGGATCCTATC 59.449 57.143 12.58 1.91 44.07 2.08
151 152 1.645710 CTACGGCAAGGGGATCCTAT 58.354 55.000 12.58 0.00 44.07 2.57
152 153 1.119574 GCTACGGCAAGGGGATCCTA 61.120 60.000 12.58 0.00 44.07 2.94
154 155 2.111251 GCTACGGCAAGGGGATCC 59.889 66.667 1.92 1.92 38.54 3.36
155 156 2.111251 GGCTACGGCAAGGGGATC 59.889 66.667 0.00 0.00 40.87 3.36
156 157 3.489513 GGGCTACGGCAAGGGGAT 61.490 66.667 0.00 0.00 40.87 3.85
157 158 4.733725 AGGGCTACGGCAAGGGGA 62.734 66.667 0.00 0.00 40.87 4.81
158 159 3.282374 AAAGGGCTACGGCAAGGGG 62.282 63.158 0.00 0.00 40.87 4.79
159 160 2.046285 CAAAGGGCTACGGCAAGGG 61.046 63.158 0.00 0.00 40.87 3.95
160 161 2.700773 GCAAAGGGCTACGGCAAGG 61.701 63.158 0.00 0.00 40.87 3.61
161 162 1.523154 TTGCAAAGGGCTACGGCAAG 61.523 55.000 0.00 0.00 45.15 4.01
162 163 1.529478 TTGCAAAGGGCTACGGCAA 60.529 52.632 0.00 0.00 45.15 4.52
163 164 2.114199 TTGCAAAGGGCTACGGCA 59.886 55.556 0.00 0.00 45.15 5.69
164 165 2.566529 GTTGCAAAGGGCTACGGC 59.433 61.111 0.00 0.00 45.15 5.68
167 168 3.623510 GTCTATGAGTTGCAAAGGGCTAC 59.376 47.826 0.00 0.00 46.70 3.58
168 169 3.263170 TGTCTATGAGTTGCAAAGGGCTA 59.737 43.478 0.00 0.00 45.15 3.93
169 170 2.040278 TGTCTATGAGTTGCAAAGGGCT 59.960 45.455 0.00 0.00 45.15 5.19
170 171 2.436417 TGTCTATGAGTTGCAAAGGGC 58.564 47.619 0.00 0.00 45.13 5.19
171 172 4.264253 TCATGTCTATGAGTTGCAAAGGG 58.736 43.478 0.00 0.00 38.37 3.95
172 173 5.885230 TTCATGTCTATGAGTTGCAAAGG 57.115 39.130 0.00 0.00 43.76 3.11
173 174 7.080353 TCATTCATGTCTATGAGTTGCAAAG 57.920 36.000 0.00 0.00 43.76 2.77
174 175 7.307694 GTTCATTCATGTCTATGAGTTGCAAA 58.692 34.615 0.00 0.00 43.76 3.68
175 176 6.127925 GGTTCATTCATGTCTATGAGTTGCAA 60.128 38.462 0.00 0.00 43.76 4.08
176 177 5.355071 GGTTCATTCATGTCTATGAGTTGCA 59.645 40.000 0.00 0.00 43.76 4.08
177 178 5.503031 CGGTTCATTCATGTCTATGAGTTGC 60.503 44.000 0.00 0.00 43.76 4.17
178 179 5.582269 ACGGTTCATTCATGTCTATGAGTTG 59.418 40.000 0.00 0.00 43.76 3.16
182 183 4.803613 CGAACGGTTCATTCATGTCTATGA 59.196 41.667 19.91 0.00 41.44 2.15
246 248 5.728637 ATATCAATCGTGTGCTCATAGGA 57.271 39.130 0.00 0.00 0.00 2.94
252 254 4.025396 CACTCCAATATCAATCGTGTGCTC 60.025 45.833 0.00 0.00 0.00 4.26
278 280 7.861629 AGGGAACATCACATGATAACTAAAGA 58.138 34.615 0.00 0.00 32.63 2.52
309 311 0.108377 GCCAAAATAAAGCCCCACGG 60.108 55.000 0.00 0.00 0.00 4.94
359 361 1.079057 GACAAGGAAGCTCGGGGAC 60.079 63.158 0.00 0.00 0.00 4.46
361 363 1.078848 CTGACAAGGAAGCTCGGGG 60.079 63.158 0.00 0.00 0.00 5.73
366 376 2.050144 TGGAAGTCTGACAAGGAAGCT 58.950 47.619 10.88 0.00 0.00 3.74
399 409 7.918562 TGAGGTAAAAATAAATAAAGATGCGGC 59.081 33.333 0.00 0.00 0.00 6.53
475 489 5.533528 ACCTATGGTCCTTGTTTACAACAAC 59.466 40.000 0.00 0.00 45.79 3.32
479 493 6.436738 TGTACCTATGGTCCTTGTTTACAA 57.563 37.500 0.00 0.00 37.09 2.41
576 597 2.658373 TGCATGCATCAAATGGTGTC 57.342 45.000 18.46 0.00 0.00 3.67
630 661 5.310409 AGAAAGAAACAAGGGTCAGATCA 57.690 39.130 0.00 0.00 0.00 2.92
631 662 6.488344 AGAAAGAAAGAAACAAGGGTCAGATC 59.512 38.462 0.00 0.00 0.00 2.75
666 700 2.111756 CTAAATACCGCACGTACGTCC 58.888 52.381 19.94 9.04 0.00 4.79
797 831 3.505464 AAGTACTACGTGCAGTCCATC 57.495 47.619 0.00 0.00 0.00 3.51
805 839 6.148264 AGAGTAAAGTGAAAGTACTACGTGC 58.852 40.000 0.00 0.00 0.00 5.34
917 955 2.957402 AGGAAGGTGAGTGCAAATGA 57.043 45.000 0.00 0.00 0.00 2.57
929 967 5.887754 TGCTTGTCCTTAAAATAGGAAGGT 58.112 37.500 0.00 0.00 45.62 3.50
930 968 5.946377 ACTGCTTGTCCTTAAAATAGGAAGG 59.054 40.000 0.00 0.00 45.62 3.46
941 982 2.418197 GGATGCGTACTGCTTGTCCTTA 60.418 50.000 10.27 0.00 46.63 2.69
949 990 1.068083 CGATGGGATGCGTACTGCT 59.932 57.895 10.27 0.00 46.63 4.24
952 993 1.040893 TCACCGATGGGATGCGTACT 61.041 55.000 0.00 0.00 36.97 2.73
953 994 0.179094 TTCACCGATGGGATGCGTAC 60.179 55.000 0.00 0.00 36.97 3.67
954 995 0.104120 CTTCACCGATGGGATGCGTA 59.896 55.000 0.00 0.00 36.97 4.42
996 1037 4.798593 GCACTGACCGGTCTTTAAACTAGT 60.799 45.833 33.39 22.47 0.00 2.57
1001 1042 2.623878 TGCACTGACCGGTCTTTAAA 57.376 45.000 33.39 13.59 0.00 1.52
1004 1045 2.632377 CATATGCACTGACCGGTCTTT 58.368 47.619 33.39 18.45 0.00 2.52
1008 1049 4.540153 GCATATGCACTGACCGGT 57.460 55.556 22.84 6.92 41.59 5.28
1054 1107 4.719997 CTAGCAGCCTAGCACGTC 57.280 61.111 0.00 0.00 35.06 4.34
1060 1113 1.816224 GCTACCTAGCTAGCAGCCTAG 59.184 57.143 24.64 9.52 43.77 3.02
1061 1114 1.912417 GCTACCTAGCTAGCAGCCTA 58.088 55.000 24.64 0.00 43.77 3.93
1062 1115 2.740121 GCTACCTAGCTAGCAGCCT 58.260 57.895 24.64 0.00 43.77 4.58
1267 1321 1.676678 GGTAGCATGCCCAGACGAGA 61.677 60.000 15.66 0.00 33.16 4.04
1363 1423 0.636647 TGATGGTGGAGGAGGAGCTA 59.363 55.000 0.00 0.00 0.00 3.32
1768 1831 1.446272 CTCCTTGGCGTCGAACTCC 60.446 63.158 0.00 0.00 0.00 3.85
1787 1850 3.692406 GACGACCAGTCCGGCCTT 61.692 66.667 0.00 0.00 43.95 4.35
1824 1887 2.666715 TTTCTTGGCGTCGTCGTCGT 62.667 55.000 13.09 0.00 45.30 4.34
1825 1888 1.930816 CTTTCTTGGCGTCGTCGTCG 61.931 60.000 7.53 7.53 45.30 5.12
1834 1897 2.259511 GCAAGGGCTTTCTTGGCG 59.740 61.111 13.69 0.00 43.06 5.69
1849 1912 3.068881 CCTTCCTCAAGGTCGGCA 58.931 61.111 0.00 0.00 44.11 5.69
1873 1936 0.031585 TATTATTCACGAGGCGCGCT 59.968 50.000 32.29 17.27 46.04 5.92
2424 2487 3.241530 TGGCAGAGTCCGGCTTGT 61.242 61.111 0.00 0.00 33.87 3.16
2837 3014 2.005370 TCCACCTCGTCCTTGTTACT 57.995 50.000 0.00 0.00 0.00 2.24
2977 3154 0.175760 TCATGTTGCTCGTAGCCTCC 59.824 55.000 0.00 0.00 41.51 4.30
3183 3360 1.864435 GCTTCTCTGTCGTGTTCACGT 60.864 52.381 21.61 0.00 0.00 4.49
3229 3406 1.724623 GCGTCGAACAGCACTGATTTA 59.275 47.619 4.31 0.00 0.00 1.40
3427 3604 1.152984 CATGTCGCCAAGGCCCATA 60.153 57.895 5.34 0.00 37.98 2.74
3436 3613 1.440060 GATCCGGTACATGTCGCCA 59.560 57.895 16.55 2.18 0.00 5.69
3563 3755 4.142578 ACGTAACAAACACACAGCAATCAA 60.143 37.500 0.00 0.00 0.00 2.57
3626 3818 7.112452 ACTCTTTTTACTCCTTGCAAATTGT 57.888 32.000 0.00 1.90 0.00 2.71
3644 3836 9.578439 CATTCTTGAAGAAAAACTGAACTCTTT 57.422 29.630 12.10 0.00 37.82 2.52
3667 3859 6.561519 ACAATACTTAGCCCTAGACACATT 57.438 37.500 0.00 0.00 0.00 2.71
3683 3875 5.291128 GCAACGCTACATGTCTAACAATACT 59.709 40.000 0.00 0.00 0.00 2.12
3687 3909 3.185594 GTGCAACGCTACATGTCTAACAA 59.814 43.478 0.00 0.00 0.00 2.83
3702 3924 4.151070 GTTGAGATTACATGTGTGCAACG 58.849 43.478 9.11 0.00 42.39 4.10
3706 3928 3.438087 AGCTGTTGAGATTACATGTGTGC 59.562 43.478 9.11 0.00 0.00 4.57
3710 3932 7.341805 AGGAATAAGCTGTTGAGATTACATGT 58.658 34.615 2.69 2.69 32.96 3.21
3771 3993 0.040603 CCCGATCGCTAGGTCGTTAC 60.041 60.000 10.32 0.00 36.17 2.50
3796 4018 1.082104 CACTCCAAAAAGCCGCGTC 60.082 57.895 4.92 0.00 0.00 5.19
3797 4019 1.098712 TTCACTCCAAAAAGCCGCGT 61.099 50.000 4.92 0.00 0.00 6.01
3798 4020 0.660300 GTTCACTCCAAAAAGCCGCG 60.660 55.000 0.00 0.00 0.00 6.46
3799 4021 0.383949 TGTTCACTCCAAAAAGCCGC 59.616 50.000 0.00 0.00 0.00 6.53
3800 4022 1.676006 ACTGTTCACTCCAAAAAGCCG 59.324 47.619 0.00 0.00 0.00 5.52
3801 4023 4.134563 TCTACTGTTCACTCCAAAAAGCC 58.865 43.478 0.00 0.00 0.00 4.35
3802 4024 5.948992 ATCTACTGTTCACTCCAAAAAGC 57.051 39.130 0.00 0.00 0.00 3.51
3803 4025 6.202954 ACGAATCTACTGTTCACTCCAAAAAG 59.797 38.462 0.00 0.00 0.00 2.27
3804 4026 6.053005 ACGAATCTACTGTTCACTCCAAAAA 58.947 36.000 0.00 0.00 0.00 1.94
3805 4027 5.607477 ACGAATCTACTGTTCACTCCAAAA 58.393 37.500 0.00 0.00 0.00 2.44
3806 4028 5.209818 ACGAATCTACTGTTCACTCCAAA 57.790 39.130 0.00 0.00 0.00 3.28
3807 4029 4.866508 ACGAATCTACTGTTCACTCCAA 57.133 40.909 0.00 0.00 0.00 3.53
3808 4030 4.866508 AACGAATCTACTGTTCACTCCA 57.133 40.909 0.00 0.00 0.00 3.86
3862 6407 3.688185 GCACTCAAGCATCTTTCATCAGA 59.312 43.478 0.00 0.00 0.00 3.27
3868 6413 2.161211 GTCAGGCACTCAAGCATCTTTC 59.839 50.000 0.00 0.00 34.60 2.62
3875 6420 0.040958 CAAACGTCAGGCACTCAAGC 60.041 55.000 0.00 0.00 34.60 4.01
3893 6438 4.059511 CAAATGCTCAGAAATTTGGCACA 58.940 39.130 0.00 0.00 39.19 4.57
3907 6452 5.899299 AGCTATTCAAATGTCCAAATGCTC 58.101 37.500 0.00 0.00 0.00 4.26
3945 6490 5.275494 ACTTTTTCACGTACCCGAAATTTG 58.725 37.500 0.00 0.00 37.88 2.32
3949 6494 4.961435 AAACTTTTTCACGTACCCGAAA 57.039 36.364 0.00 0.00 37.88 3.46
3950 6495 5.006552 CAGTAAACTTTTTCACGTACCCGAA 59.993 40.000 0.00 0.00 37.88 4.30
3953 6498 5.739752 ACAGTAAACTTTTTCACGTACCC 57.260 39.130 0.00 0.00 0.00 3.69
3984 6529 9.952341 GGCAAAATAAATAAATCAAGTTCGAAC 57.048 29.630 20.71 20.71 0.00 3.95
3992 6537 7.771183 AGCTCTCGGCAAAATAAATAAATCAA 58.229 30.769 0.00 0.00 44.79 2.57
3999 6544 5.993106 GAGTAGCTCTCGGCAAAATAAAT 57.007 39.130 0.00 0.00 44.79 1.40
4022 6567 3.755378 AGTTTCAGCACATTCAGACATCC 59.245 43.478 0.00 0.00 0.00 3.51
4029 6574 1.001487 CGGCAAGTTTCAGCACATTCA 60.001 47.619 0.00 0.00 0.00 2.57
4049 6594 4.454847 AGATGATTGAATGATGATGTCCGC 59.545 41.667 0.00 0.00 0.00 5.54
4139 6684 2.821366 CCGCTCCACCATCACTGC 60.821 66.667 0.00 0.00 0.00 4.40
4143 6688 4.408821 GCCACCGCTCCACCATCA 62.409 66.667 0.00 0.00 0.00 3.07
4168 6714 1.952266 GACGAAACTACTTGGCGCGG 61.952 60.000 8.83 0.00 0.00 6.46
4171 6717 1.347320 GAGGACGAAACTACTTGGCG 58.653 55.000 0.00 0.00 0.00 5.69
4179 6725 4.736896 GCCGCCGAGGACGAAACT 62.737 66.667 7.36 0.00 45.00 2.66
4195 6741 2.887568 CCGACCAGAGCACATCGC 60.888 66.667 0.00 0.00 42.91 4.58
4213 6759 2.331098 TTGCGAAAGGCTGCAACG 59.669 55.556 6.64 2.42 45.45 4.10
4220 6766 1.106285 ATCCCTTCATTGCGAAAGGC 58.894 50.000 0.00 0.00 35.44 4.35
4231 6777 4.413189 TGAGGATAGATTGCAATCCCTTCA 59.587 41.667 31.05 26.20 42.32 3.02
4330 6876 4.413520 AGGACCACCATTAGATAAGCATGT 59.586 41.667 0.00 0.00 38.94 3.21
4339 6885 3.196254 GGTTACGAAGGACCACCATTAGA 59.804 47.826 0.00 0.00 37.69 2.10
4340 6886 3.528532 GGTTACGAAGGACCACCATTAG 58.471 50.000 0.00 0.00 37.69 1.73
4341 6887 2.236893 GGGTTACGAAGGACCACCATTA 59.763 50.000 0.00 0.00 39.18 1.90
4344 6890 1.482748 GGGGTTACGAAGGACCACCA 61.483 60.000 0.00 0.00 39.18 4.17
4345 6891 1.196766 AGGGGTTACGAAGGACCACC 61.197 60.000 0.00 0.00 41.28 4.61
4346 6892 0.036671 CAGGGGTTACGAAGGACCAC 60.037 60.000 0.00 0.00 40.78 4.16
4347 6893 0.472352 ACAGGGGTTACGAAGGACCA 60.472 55.000 0.00 0.00 39.18 4.02
4348 6894 1.560505 TACAGGGGTTACGAAGGACC 58.439 55.000 0.00 0.00 37.16 4.46
4349 6895 3.055602 ACAATACAGGGGTTACGAAGGAC 60.056 47.826 0.00 0.00 0.00 3.85
4350 6896 3.175594 ACAATACAGGGGTTACGAAGGA 58.824 45.455 0.00 0.00 0.00 3.36
4352 6898 4.571919 TGAACAATACAGGGGTTACGAAG 58.428 43.478 0.00 0.00 0.00 3.79
4353 6899 4.620589 TGAACAATACAGGGGTTACGAA 57.379 40.909 0.00 0.00 0.00 3.85
4392 7695 9.944663 GTGTATGTTGAGTGTTATTGAAAGAAA 57.055 29.630 0.00 0.00 0.00 2.52
4426 7729 0.470766 TCTGTTACTTGGGTTGCGGT 59.529 50.000 0.00 0.00 0.00 5.68
4427 7730 1.535462 CTTCTGTTACTTGGGTTGCGG 59.465 52.381 0.00 0.00 0.00 5.69
4428 7731 1.069227 GCTTCTGTTACTTGGGTTGCG 60.069 52.381 0.00 0.00 0.00 4.85
4438 7741 5.298527 GTGGGTTATAATGGGCTTCTGTTAC 59.701 44.000 0.00 0.00 0.00 2.50
4478 8728 4.023536 GTCCCGTTTGATGTGTGTATGTTT 60.024 41.667 0.00 0.00 0.00 2.83
4486 8736 1.673920 GTTGTGTCCCGTTTGATGTGT 59.326 47.619 0.00 0.00 0.00 3.72
4491 8741 4.008330 TGTTTTAGTTGTGTCCCGTTTGA 58.992 39.130 0.00 0.00 0.00 2.69
4493 8743 3.181494 GCTGTTTTAGTTGTGTCCCGTTT 60.181 43.478 0.00 0.00 0.00 3.60
4516 8766 4.642437 TGCCGTATTCATATCTTTTTGCCA 59.358 37.500 0.00 0.00 0.00 4.92
4517 8767 5.181690 TGCCGTATTCATATCTTTTTGCC 57.818 39.130 0.00 0.00 0.00 4.52
4518 8768 5.173854 GCTTGCCGTATTCATATCTTTTTGC 59.826 40.000 0.00 0.00 0.00 3.68
4520 8770 5.505654 CCGCTTGCCGTATTCATATCTTTTT 60.506 40.000 0.00 0.00 34.38 1.94
4521 8771 4.024048 CCGCTTGCCGTATTCATATCTTTT 60.024 41.667 0.00 0.00 34.38 2.27
4523 8773 3.067106 CCGCTTGCCGTATTCATATCTT 58.933 45.455 0.00 0.00 34.38 2.40
4524 8774 2.037251 ACCGCTTGCCGTATTCATATCT 59.963 45.455 0.00 0.00 34.38 1.98
4525 8775 2.413837 ACCGCTTGCCGTATTCATATC 58.586 47.619 0.00 0.00 34.38 1.63
4526 8776 2.543777 ACCGCTTGCCGTATTCATAT 57.456 45.000 0.00 0.00 34.38 1.78
4527 8777 2.746269 GTACCGCTTGCCGTATTCATA 58.254 47.619 0.00 0.00 34.38 2.15
4548 10004 1.532868 ACTTGTTGATCTTGTCGCTGC 59.467 47.619 0.00 0.00 0.00 5.25
4572 10028 3.443681 ACCAAAGGGCTGAAATATTCGTG 59.556 43.478 0.00 0.00 37.90 4.35
4580 10036 0.106918 ACACGACCAAAGGGCTGAAA 60.107 50.000 0.00 0.00 37.90 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.