Multiple sequence alignment - TraesCS2B01G283600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G283600 chr2B 100.000 2713 0 0 1 2713 391164476 391161764 0 5011
1 TraesCS2B01G283600 chr5A 98.564 2367 28 2 1 2361 19245370 19247736 0 4178
2 TraesCS2B01G283600 chr7A 98.477 2364 36 0 1 2364 60282780 60280417 0 4167
3 TraesCS2B01G283600 chr7A 98.898 363 4 0 2351 2713 120899391 120899753 0 649
4 TraesCS2B01G283600 chr1A 98.518 2361 35 0 1 2361 498687760 498690120 0 4167
5 TraesCS2B01G283600 chr7D 98.438 2369 31 2 1 2364 382053550 382051183 0 4165
6 TraesCS2B01G283600 chr7D 98.313 2371 30 2 1 2361 381970293 381972663 0 4148
7 TraesCS2B01G283600 chr7D 98.898 363 4 0 2351 2713 626658877 626658515 0 649
8 TraesCS2B01G283600 chrUn 98.476 2362 35 1 1 2361 186204953 186207314 0 4161
9 TraesCS2B01G283600 chrUn 98.898 363 4 0 2351 2713 45109416 45109054 0 649
10 TraesCS2B01G283600 chrUn 98.623 363 5 0 2351 2713 86497000 86497362 0 643
11 TraesCS2B01G283600 chr7B 98.476 2362 35 1 1 2361 716875313 716877674 0 4161
12 TraesCS2B01G283600 chr7B 98.436 2365 36 1 1 2364 742992913 742990549 0 4161
13 TraesCS2B01G283600 chr7B 98.898 363 4 0 2351 2713 716890948 716890586 0 649
14 TraesCS2B01G283600 chr6D 98.270 2370 35 2 1 2364 124520995 124518626 0 4145
15 TraesCS2B01G283600 chr5B 98.898 363 4 0 2351 2713 130622981 130622619 0 649
16 TraesCS2B01G283600 chr5B 98.898 363 4 0 2351 2713 533083267 533083629 0 649
17 TraesCS2B01G283600 chr4D 98.898 363 4 0 2351 2713 6630394 6630756 0 649
18 TraesCS2B01G283600 chr1B 98.898 363 4 0 2351 2713 461416822 461417184 0 649


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G283600 chr2B 391161764 391164476 2712 True 5011 5011 100.000 1 2713 1 chr2B.!!$R1 2712
1 TraesCS2B01G283600 chr5A 19245370 19247736 2366 False 4178 4178 98.564 1 2361 1 chr5A.!!$F1 2360
2 TraesCS2B01G283600 chr7A 60280417 60282780 2363 True 4167 4167 98.477 1 2364 1 chr7A.!!$R1 2363
3 TraesCS2B01G283600 chr1A 498687760 498690120 2360 False 4167 4167 98.518 1 2361 1 chr1A.!!$F1 2360
4 TraesCS2B01G283600 chr7D 382051183 382053550 2367 True 4165 4165 98.438 1 2364 1 chr7D.!!$R1 2363
5 TraesCS2B01G283600 chr7D 381970293 381972663 2370 False 4148 4148 98.313 1 2361 1 chr7D.!!$F1 2360
6 TraesCS2B01G283600 chrUn 186204953 186207314 2361 False 4161 4161 98.476 1 2361 1 chrUn.!!$F2 2360
7 TraesCS2B01G283600 chr7B 716875313 716877674 2361 False 4161 4161 98.476 1 2361 1 chr7B.!!$F1 2360
8 TraesCS2B01G283600 chr7B 742990549 742992913 2364 True 4161 4161 98.436 1 2364 1 chr7B.!!$R2 2363
9 TraesCS2B01G283600 chr6D 124518626 124520995 2369 True 4145 4145 98.270 1 2364 1 chr6D.!!$R1 2363

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1183 1196 0.396556 TGCCATCCATTGCAGCAGAT 60.397 50.0 0.0 0.0 32.77 2.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2652 2670 0.035056 CCGAATCTCTTGGTGGCCTT 60.035 55.0 3.32 0.0 0.0 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1183 1196 0.396556 TGCCATCCATTGCAGCAGAT 60.397 50.000 0.00 0.00 32.77 2.90
1242 1260 9.263538 CTTTGAATCAAAGGTTTCATGAAATCA 57.736 29.630 28.55 19.43 44.75 2.57
1541 1559 6.933514 AAATGGAAAGGGTTGTATCACATT 57.066 33.333 0.00 0.00 0.00 2.71
1554 1572 7.201644 GGTTGTATCACATTGAGATGTCGATTT 60.202 37.037 6.82 0.00 44.55 2.17
1748 1766 1.780309 ACCAAACCCAGGTTCATCTCA 59.220 47.619 1.78 0.00 35.33 3.27
1785 1803 4.533815 ACTCGTACAAGGATATGGAGTCA 58.466 43.478 0.00 0.00 0.00 3.41
1848 1866 2.064434 TTCCCATCTGTGTTGCAACA 57.936 45.000 27.96 27.96 36.38 3.33
1992 2010 1.149077 AGTAAGCCCCACAACCCAAAT 59.851 47.619 0.00 0.00 0.00 2.32
2074 2092 4.943705 TGAGAACATTGTAATGGAGAAGGC 59.056 41.667 9.22 0.00 40.70 4.35
2075 2093 4.922206 AGAACATTGTAATGGAGAAGGCA 58.078 39.130 9.22 0.00 40.70 4.75
2162 2180 2.560504 CGTAATGCTGGAACTATGGCA 58.439 47.619 0.00 0.00 39.06 4.92
2260 2278 9.733556 ACATGAGAAACCAGTACAAATATAACA 57.266 29.630 0.00 0.00 0.00 2.41
2316 2334 1.243902 GACTTTCGTTTGGGCCATGA 58.756 50.000 7.26 2.84 0.00 3.07
2361 2379 3.199764 GCAATGCTGCGGAAAAAGT 57.800 47.368 0.00 0.00 39.20 2.66
2364 2382 2.867429 CAATGCTGCGGAAAAAGTAGG 58.133 47.619 0.00 0.00 0.00 3.18
2365 2383 2.487762 CAATGCTGCGGAAAAAGTAGGA 59.512 45.455 0.00 0.00 0.00 2.94
2366 2384 2.264005 TGCTGCGGAAAAAGTAGGAA 57.736 45.000 0.00 0.00 0.00 3.36
2367 2385 2.577700 TGCTGCGGAAAAAGTAGGAAA 58.422 42.857 0.00 0.00 0.00 3.13
2368 2386 2.952978 TGCTGCGGAAAAAGTAGGAAAA 59.047 40.909 0.00 0.00 0.00 2.29
2369 2387 3.572255 TGCTGCGGAAAAAGTAGGAAAAT 59.428 39.130 0.00 0.00 0.00 1.82
2370 2388 3.920412 GCTGCGGAAAAAGTAGGAAAATG 59.080 43.478 0.00 0.00 0.00 2.32
2371 2389 4.485163 CTGCGGAAAAAGTAGGAAAATGG 58.515 43.478 0.00 0.00 0.00 3.16
2372 2390 4.145807 TGCGGAAAAAGTAGGAAAATGGA 58.854 39.130 0.00 0.00 0.00 3.41
2373 2391 4.022676 TGCGGAAAAAGTAGGAAAATGGAC 60.023 41.667 0.00 0.00 0.00 4.02
2374 2392 4.217767 GCGGAAAAAGTAGGAAAATGGACT 59.782 41.667 0.00 0.00 0.00 3.85
2375 2393 5.699839 CGGAAAAAGTAGGAAAATGGACTG 58.300 41.667 0.00 0.00 0.00 3.51
2376 2394 5.472137 CGGAAAAAGTAGGAAAATGGACTGA 59.528 40.000 0.00 0.00 0.00 3.41
2377 2395 6.016610 CGGAAAAAGTAGGAAAATGGACTGAA 60.017 38.462 0.00 0.00 0.00 3.02
2378 2396 7.469456 CGGAAAAAGTAGGAAAATGGACTGAAA 60.469 37.037 0.00 0.00 0.00 2.69
2379 2397 8.367911 GGAAAAAGTAGGAAAATGGACTGAAAT 58.632 33.333 0.00 0.00 0.00 2.17
2380 2398 9.764363 GAAAAAGTAGGAAAATGGACTGAAATT 57.236 29.630 0.00 0.00 0.00 1.82
2381 2399 9.546428 AAAAAGTAGGAAAATGGACTGAAATTG 57.454 29.630 0.00 0.00 0.00 2.32
2382 2400 7.839680 AAGTAGGAAAATGGACTGAAATTGT 57.160 32.000 0.00 0.00 0.00 2.71
2383 2401 7.839680 AGTAGGAAAATGGACTGAAATTGTT 57.160 32.000 0.00 0.00 0.00 2.83
2384 2402 7.661040 AGTAGGAAAATGGACTGAAATTGTTG 58.339 34.615 0.00 0.00 0.00 3.33
2385 2403 5.857268 AGGAAAATGGACTGAAATTGTTGG 58.143 37.500 0.00 0.00 0.00 3.77
2386 2404 5.602145 AGGAAAATGGACTGAAATTGTTGGA 59.398 36.000 0.00 0.00 0.00 3.53
2387 2405 6.270695 AGGAAAATGGACTGAAATTGTTGGAT 59.729 34.615 0.00 0.00 0.00 3.41
2388 2406 7.454380 AGGAAAATGGACTGAAATTGTTGGATA 59.546 33.333 0.00 0.00 0.00 2.59
2389 2407 8.093927 GGAAAATGGACTGAAATTGTTGGATAA 58.906 33.333 0.00 0.00 0.00 1.75
2390 2408 9.143631 GAAAATGGACTGAAATTGTTGGATAAG 57.856 33.333 0.00 0.00 0.00 1.73
2391 2409 7.781324 AATGGACTGAAATTGTTGGATAAGT 57.219 32.000 0.00 0.00 0.00 2.24
2392 2410 6.573664 TGGACTGAAATTGTTGGATAAGTG 57.426 37.500 0.00 0.00 0.00 3.16
2393 2411 5.476599 TGGACTGAAATTGTTGGATAAGTGG 59.523 40.000 0.00 0.00 0.00 4.00
2394 2412 5.710099 GGACTGAAATTGTTGGATAAGTGGA 59.290 40.000 0.00 0.00 0.00 4.02
2395 2413 6.378280 GGACTGAAATTGTTGGATAAGTGGAT 59.622 38.462 0.00 0.00 0.00 3.41
2396 2414 7.093771 GGACTGAAATTGTTGGATAAGTGGATT 60.094 37.037 0.00 0.00 0.00 3.01
2397 2415 8.193953 ACTGAAATTGTTGGATAAGTGGATTT 57.806 30.769 0.00 0.00 0.00 2.17
2398 2416 8.090214 ACTGAAATTGTTGGATAAGTGGATTTG 58.910 33.333 0.00 0.00 0.00 2.32
2399 2417 6.873076 TGAAATTGTTGGATAAGTGGATTTGC 59.127 34.615 0.00 0.00 0.00 3.68
2400 2418 5.999205 ATTGTTGGATAAGTGGATTTGCA 57.001 34.783 0.00 0.00 0.00 4.08
2401 2419 5.389859 TTGTTGGATAAGTGGATTTGCAG 57.610 39.130 0.00 0.00 0.00 4.41
2402 2420 4.406456 TGTTGGATAAGTGGATTTGCAGT 58.594 39.130 0.00 0.00 0.00 4.40
2403 2421 5.565509 TGTTGGATAAGTGGATTTGCAGTA 58.434 37.500 0.00 0.00 0.00 2.74
2404 2422 6.186957 TGTTGGATAAGTGGATTTGCAGTAT 58.813 36.000 0.00 0.00 0.00 2.12
2405 2423 6.318648 TGTTGGATAAGTGGATTTGCAGTATC 59.681 38.462 3.05 3.05 0.00 2.24
2406 2424 6.252599 TGGATAAGTGGATTTGCAGTATCT 57.747 37.500 9.81 0.00 0.00 1.98
2407 2425 6.291377 TGGATAAGTGGATTTGCAGTATCTC 58.709 40.000 9.81 5.31 0.00 2.75
2408 2426 6.126796 TGGATAAGTGGATTTGCAGTATCTCA 60.127 38.462 9.81 5.07 0.00 3.27
2409 2427 6.767902 GGATAAGTGGATTTGCAGTATCTCAA 59.232 38.462 9.81 0.00 0.00 3.02
2410 2428 5.886960 AAGTGGATTTGCAGTATCTCAAC 57.113 39.130 9.81 7.08 0.00 3.18
2411 2429 4.910195 AGTGGATTTGCAGTATCTCAACA 58.090 39.130 9.81 0.00 0.00 3.33
2412 2430 5.316167 AGTGGATTTGCAGTATCTCAACAA 58.684 37.500 9.81 0.00 0.00 2.83
2413 2431 5.948162 AGTGGATTTGCAGTATCTCAACAAT 59.052 36.000 9.81 0.00 0.00 2.71
2414 2432 6.094603 AGTGGATTTGCAGTATCTCAACAATC 59.905 38.462 9.81 2.36 0.00 2.67
2415 2433 5.945191 TGGATTTGCAGTATCTCAACAATCA 59.055 36.000 9.81 0.00 0.00 2.57
2416 2434 6.094464 TGGATTTGCAGTATCTCAACAATCAG 59.906 38.462 9.81 0.00 0.00 2.90
2417 2435 6.317140 GGATTTGCAGTATCTCAACAATCAGA 59.683 38.462 9.81 0.00 0.00 3.27
2418 2436 7.148188 GGATTTGCAGTATCTCAACAATCAGAA 60.148 37.037 9.81 0.00 0.00 3.02
2419 2437 6.486253 TTGCAGTATCTCAACAATCAGAAC 57.514 37.500 0.00 0.00 0.00 3.01
2420 2438 5.550290 TGCAGTATCTCAACAATCAGAACA 58.450 37.500 0.00 0.00 0.00 3.18
2421 2439 5.640783 TGCAGTATCTCAACAATCAGAACAG 59.359 40.000 0.00 0.00 0.00 3.16
2422 2440 5.641209 GCAGTATCTCAACAATCAGAACAGT 59.359 40.000 0.00 0.00 0.00 3.55
2423 2441 6.401903 GCAGTATCTCAACAATCAGAACAGTG 60.402 42.308 0.00 0.00 0.00 3.66
2424 2442 6.870439 CAGTATCTCAACAATCAGAACAGTGA 59.130 38.462 0.00 0.00 0.00 3.41
2425 2443 7.386025 CAGTATCTCAACAATCAGAACAGTGAA 59.614 37.037 0.00 0.00 0.00 3.18
2426 2444 8.099537 AGTATCTCAACAATCAGAACAGTGAAT 58.900 33.333 0.00 0.00 0.00 2.57
2427 2445 9.371136 GTATCTCAACAATCAGAACAGTGAATA 57.629 33.333 0.00 0.00 0.00 1.75
2429 2447 8.853077 TCTCAACAATCAGAACAGTGAATATT 57.147 30.769 0.00 0.00 0.00 1.28
2430 2448 8.939929 TCTCAACAATCAGAACAGTGAATATTC 58.060 33.333 8.60 8.60 0.00 1.75
2431 2449 8.044060 TCAACAATCAGAACAGTGAATATTCC 57.956 34.615 12.90 4.63 0.00 3.01
2432 2450 7.665145 TCAACAATCAGAACAGTGAATATTCCA 59.335 33.333 12.90 0.00 0.00 3.53
2433 2451 8.464404 CAACAATCAGAACAGTGAATATTCCAT 58.536 33.333 12.90 0.00 0.00 3.41
2434 2452 8.218338 ACAATCAGAACAGTGAATATTCCATC 57.782 34.615 12.90 4.03 0.00 3.51
2435 2453 7.830697 ACAATCAGAACAGTGAATATTCCATCA 59.169 33.333 12.90 0.00 0.00 3.07
2436 2454 8.847196 CAATCAGAACAGTGAATATTCCATCAT 58.153 33.333 12.90 0.00 0.00 2.45
2437 2455 8.618702 ATCAGAACAGTGAATATTCCATCATC 57.381 34.615 12.90 6.33 0.00 2.92
2438 2456 6.994496 TCAGAACAGTGAATATTCCATCATCC 59.006 38.462 12.90 0.00 0.00 3.51
2439 2457 6.769341 CAGAACAGTGAATATTCCATCATCCA 59.231 38.462 12.90 0.00 0.00 3.41
2440 2458 7.283807 CAGAACAGTGAATATTCCATCATCCAA 59.716 37.037 12.90 0.00 0.00 3.53
2441 2459 7.835682 AGAACAGTGAATATTCCATCATCCAAA 59.164 33.333 12.90 0.00 0.00 3.28
2442 2460 7.338800 ACAGTGAATATTCCATCATCCAAAC 57.661 36.000 12.90 0.65 0.00 2.93
2443 2461 7.121382 ACAGTGAATATTCCATCATCCAAACT 58.879 34.615 12.90 2.90 0.00 2.66
2444 2462 8.274322 ACAGTGAATATTCCATCATCCAAACTA 58.726 33.333 12.90 0.00 0.00 2.24
2445 2463 9.123902 CAGTGAATATTCCATCATCCAAACTAA 57.876 33.333 12.90 0.00 0.00 2.24
2446 2464 9.347240 AGTGAATATTCCATCATCCAAACTAAG 57.653 33.333 12.90 0.00 0.00 2.18
2447 2465 8.078596 GTGAATATTCCATCATCCAAACTAAGC 58.921 37.037 12.90 0.00 0.00 3.09
2448 2466 8.000709 TGAATATTCCATCATCCAAACTAAGCT 58.999 33.333 12.90 0.00 0.00 3.74
2449 2467 8.773033 AATATTCCATCATCCAAACTAAGCTT 57.227 30.769 3.48 3.48 0.00 3.74
2450 2468 6.705863 ATTCCATCATCCAAACTAAGCTTC 57.294 37.500 0.00 0.00 0.00 3.86
2451 2469 4.526970 TCCATCATCCAAACTAAGCTTCC 58.473 43.478 0.00 0.00 0.00 3.46
2452 2470 4.228210 TCCATCATCCAAACTAAGCTTCCT 59.772 41.667 0.00 0.00 0.00 3.36
2453 2471 4.578105 CCATCATCCAAACTAAGCTTCCTC 59.422 45.833 0.00 0.00 0.00 3.71
2454 2472 4.908601 TCATCCAAACTAAGCTTCCTCA 57.091 40.909 0.00 0.00 0.00 3.86
2455 2473 4.836825 TCATCCAAACTAAGCTTCCTCAG 58.163 43.478 0.00 0.00 0.00 3.35
2456 2474 4.532126 TCATCCAAACTAAGCTTCCTCAGA 59.468 41.667 0.00 0.00 0.00 3.27
2457 2475 5.190528 TCATCCAAACTAAGCTTCCTCAGAT 59.809 40.000 0.00 0.00 0.00 2.90
2458 2476 5.091261 TCCAAACTAAGCTTCCTCAGATC 57.909 43.478 0.00 0.00 0.00 2.75
2459 2477 4.080863 TCCAAACTAAGCTTCCTCAGATCC 60.081 45.833 0.00 0.00 0.00 3.36
2460 2478 4.080638 CCAAACTAAGCTTCCTCAGATCCT 60.081 45.833 0.00 0.00 0.00 3.24
2461 2479 5.129485 CCAAACTAAGCTTCCTCAGATCCTA 59.871 44.000 0.00 0.00 0.00 2.94
2462 2480 6.352222 CCAAACTAAGCTTCCTCAGATCCTAA 60.352 42.308 0.00 0.00 0.00 2.69
2463 2481 5.862678 ACTAAGCTTCCTCAGATCCTAAC 57.137 43.478 0.00 0.00 0.00 2.34
2464 2482 4.651962 ACTAAGCTTCCTCAGATCCTAACC 59.348 45.833 0.00 0.00 0.00 2.85
2465 2483 2.403561 AGCTTCCTCAGATCCTAACCC 58.596 52.381 0.00 0.00 0.00 4.11
2466 2484 2.119495 GCTTCCTCAGATCCTAACCCA 58.881 52.381 0.00 0.00 0.00 4.51
2467 2485 2.708325 GCTTCCTCAGATCCTAACCCAT 59.292 50.000 0.00 0.00 0.00 4.00
2468 2486 3.137360 GCTTCCTCAGATCCTAACCCATT 59.863 47.826 0.00 0.00 0.00 3.16
2469 2487 4.712476 CTTCCTCAGATCCTAACCCATTG 58.288 47.826 0.00 0.00 0.00 2.82
2470 2488 3.048600 TCCTCAGATCCTAACCCATTGG 58.951 50.000 0.00 0.00 37.80 3.16
2482 2500 2.851195 ACCCATTGGTCATTATCGAGC 58.149 47.619 1.20 0.00 43.06 5.03
2483 2501 2.154462 CCCATTGGTCATTATCGAGCC 58.846 52.381 1.20 0.00 32.32 4.70
2484 2502 2.224621 CCCATTGGTCATTATCGAGCCT 60.225 50.000 1.20 0.00 32.32 4.58
2485 2503 3.070018 CCATTGGTCATTATCGAGCCTC 58.930 50.000 0.00 0.00 32.32 4.70
2486 2504 2.509052 TTGGTCATTATCGAGCCTCG 57.491 50.000 8.05 8.05 42.10 4.63
2487 2505 1.399714 TGGTCATTATCGAGCCTCGT 58.600 50.000 14.64 4.29 41.35 4.18
2488 2506 1.067060 TGGTCATTATCGAGCCTCGTG 59.933 52.381 14.64 5.03 41.35 4.35
2489 2507 1.337071 GGTCATTATCGAGCCTCGTGA 59.663 52.381 14.64 7.53 41.35 4.35
2490 2508 2.386249 GTCATTATCGAGCCTCGTGAC 58.614 52.381 16.48 16.48 41.35 3.67
2491 2509 2.033550 GTCATTATCGAGCCTCGTGACT 59.966 50.000 21.42 7.21 38.38 3.41
2492 2510 2.290916 TCATTATCGAGCCTCGTGACTC 59.709 50.000 14.64 0.00 41.35 3.36
2493 2511 1.022735 TTATCGAGCCTCGTGACTCC 58.977 55.000 14.64 0.00 41.35 3.85
2494 2512 1.158484 TATCGAGCCTCGTGACTCCG 61.158 60.000 14.64 0.00 41.35 4.63
2495 2513 4.180946 CGAGCCTCGTGACTCCGG 62.181 72.222 5.82 0.00 34.72 5.14
2496 2514 4.500116 GAGCCTCGTGACTCCGGC 62.500 72.222 0.00 0.00 42.79 6.13
2498 2516 4.803426 GCCTCGTGACTCCGGCTG 62.803 72.222 0.00 0.00 39.42 4.85
2499 2517 3.374402 CCTCGTGACTCCGGCTGT 61.374 66.667 0.00 0.00 0.00 4.40
2500 2518 2.126307 CTCGTGACTCCGGCTGTG 60.126 66.667 0.00 0.00 0.00 3.66
2501 2519 2.910479 TCGTGACTCCGGCTGTGT 60.910 61.111 0.00 0.00 0.00 3.72
2502 2520 2.029073 CGTGACTCCGGCTGTGTT 59.971 61.111 0.00 0.00 0.00 3.32
2503 2521 2.310233 CGTGACTCCGGCTGTGTTG 61.310 63.158 0.00 0.00 0.00 3.33
2504 2522 1.069090 GTGACTCCGGCTGTGTTGA 59.931 57.895 0.00 0.00 0.00 3.18
2505 2523 0.320771 GTGACTCCGGCTGTGTTGAT 60.321 55.000 0.00 0.00 0.00 2.57
2506 2524 1.067142 GTGACTCCGGCTGTGTTGATA 60.067 52.381 0.00 0.00 0.00 2.15
2507 2525 1.831106 TGACTCCGGCTGTGTTGATAT 59.169 47.619 0.00 0.00 0.00 1.63
2508 2526 2.159099 TGACTCCGGCTGTGTTGATATC 60.159 50.000 0.00 0.00 0.00 1.63
2509 2527 2.101582 GACTCCGGCTGTGTTGATATCT 59.898 50.000 3.98 0.00 0.00 1.98
2510 2528 2.501723 ACTCCGGCTGTGTTGATATCTT 59.498 45.455 3.98 0.00 0.00 2.40
2511 2529 3.126831 CTCCGGCTGTGTTGATATCTTC 58.873 50.000 3.98 0.00 0.00 2.87
2512 2530 1.860950 CCGGCTGTGTTGATATCTTCG 59.139 52.381 3.98 0.00 0.00 3.79
2513 2531 2.540515 CGGCTGTGTTGATATCTTCGT 58.459 47.619 3.98 0.00 0.00 3.85
2514 2532 3.490249 CCGGCTGTGTTGATATCTTCGTA 60.490 47.826 3.98 0.00 0.00 3.43
2515 2533 4.299155 CGGCTGTGTTGATATCTTCGTAT 58.701 43.478 3.98 0.00 0.00 3.06
2516 2534 4.745125 CGGCTGTGTTGATATCTTCGTATT 59.255 41.667 3.98 0.00 0.00 1.89
2517 2535 5.918576 CGGCTGTGTTGATATCTTCGTATTA 59.081 40.000 3.98 0.00 0.00 0.98
2518 2536 6.129168 CGGCTGTGTTGATATCTTCGTATTAC 60.129 42.308 3.98 0.00 0.00 1.89
2519 2537 6.145696 GGCTGTGTTGATATCTTCGTATTACC 59.854 42.308 3.98 0.00 0.00 2.85
2520 2538 6.924060 GCTGTGTTGATATCTTCGTATTACCT 59.076 38.462 3.98 0.00 0.00 3.08
2521 2539 7.096023 GCTGTGTTGATATCTTCGTATTACCTG 60.096 40.741 3.98 0.00 0.00 4.00
2522 2540 7.778083 TGTGTTGATATCTTCGTATTACCTGT 58.222 34.615 3.98 0.00 0.00 4.00
2523 2541 8.255206 TGTGTTGATATCTTCGTATTACCTGTT 58.745 33.333 3.98 0.00 0.00 3.16
2524 2542 9.740239 GTGTTGATATCTTCGTATTACCTGTTA 57.260 33.333 3.98 0.00 0.00 2.41
2542 2560 8.964533 ACCTGTTATCATTCTATCTATCTGGT 57.035 34.615 0.00 0.00 0.00 4.00
2543 2561 9.386122 ACCTGTTATCATTCTATCTATCTGGTT 57.614 33.333 0.00 0.00 0.00 3.67
2558 2576 9.632638 ATCTATCTGGTTATTGCTTTATGTGTT 57.367 29.630 0.00 0.00 0.00 3.32
2559 2577 8.892723 TCTATCTGGTTATTGCTTTATGTGTTG 58.107 33.333 0.00 0.00 0.00 3.33
2560 2578 6.266168 TCTGGTTATTGCTTTATGTGTTGG 57.734 37.500 0.00 0.00 0.00 3.77
2561 2579 5.772672 TCTGGTTATTGCTTTATGTGTTGGT 59.227 36.000 0.00 0.00 0.00 3.67
2562 2580 6.266558 TCTGGTTATTGCTTTATGTGTTGGTT 59.733 34.615 0.00 0.00 0.00 3.67
2563 2581 6.219473 TGGTTATTGCTTTATGTGTTGGTTG 58.781 36.000 0.00 0.00 0.00 3.77
2564 2582 5.637387 GGTTATTGCTTTATGTGTTGGTTGG 59.363 40.000 0.00 0.00 0.00 3.77
2565 2583 4.953940 ATTGCTTTATGTGTTGGTTGGT 57.046 36.364 0.00 0.00 0.00 3.67
2566 2584 7.371936 GTTATTGCTTTATGTGTTGGTTGGTA 58.628 34.615 0.00 0.00 0.00 3.25
2567 2585 6.603940 ATTGCTTTATGTGTTGGTTGGTAT 57.396 33.333 0.00 0.00 0.00 2.73
2568 2586 6.412362 TTGCTTTATGTGTTGGTTGGTATT 57.588 33.333 0.00 0.00 0.00 1.89
2569 2587 6.412362 TGCTTTATGTGTTGGTTGGTATTT 57.588 33.333 0.00 0.00 0.00 1.40
2570 2588 6.451393 TGCTTTATGTGTTGGTTGGTATTTC 58.549 36.000 0.00 0.00 0.00 2.17
2571 2589 6.040955 TGCTTTATGTGTTGGTTGGTATTTCA 59.959 34.615 0.00 0.00 0.00 2.69
2572 2590 6.364976 GCTTTATGTGTTGGTTGGTATTTCAC 59.635 38.462 0.00 0.00 0.00 3.18
2573 2591 7.589958 TTTATGTGTTGGTTGGTATTTCACT 57.410 32.000 0.00 0.00 0.00 3.41
2574 2592 8.693120 TTTATGTGTTGGTTGGTATTTCACTA 57.307 30.769 0.00 0.00 0.00 2.74
2575 2593 8.871629 TTATGTGTTGGTTGGTATTTCACTAT 57.128 30.769 0.00 0.00 0.00 2.12
2576 2594 7.775053 ATGTGTTGGTTGGTATTTCACTATT 57.225 32.000 0.00 0.00 0.00 1.73
2577 2595 7.589958 TGTGTTGGTTGGTATTTCACTATTT 57.410 32.000 0.00 0.00 0.00 1.40
2578 2596 8.693120 TGTGTTGGTTGGTATTTCACTATTTA 57.307 30.769 0.00 0.00 0.00 1.40
2579 2597 9.132923 TGTGTTGGTTGGTATTTCACTATTTAA 57.867 29.630 0.00 0.00 0.00 1.52
2580 2598 9.620660 GTGTTGGTTGGTATTTCACTATTTAAG 57.379 33.333 0.00 0.00 0.00 1.85
2581 2599 9.357161 TGTTGGTTGGTATTTCACTATTTAAGT 57.643 29.630 0.00 0.00 39.81 2.24
2610 2628 8.994429 ACAGTTACTGATTCTATTGACTGAAG 57.006 34.615 20.07 0.00 37.34 3.02
2611 2629 8.037758 ACAGTTACTGATTCTATTGACTGAAGG 58.962 37.037 20.07 0.00 37.34 3.46
2612 2630 8.253810 CAGTTACTGATTCTATTGACTGAAGGA 58.746 37.037 6.50 0.00 36.31 3.36
2613 2631 8.986991 AGTTACTGATTCTATTGACTGAAGGAT 58.013 33.333 0.00 0.00 0.00 3.24
2614 2632 9.606631 GTTACTGATTCTATTGACTGAAGGATT 57.393 33.333 0.00 0.00 0.00 3.01
2615 2633 9.605275 TTACTGATTCTATTGACTGAAGGATTG 57.395 33.333 0.00 0.00 0.00 2.67
2616 2634 6.541641 ACTGATTCTATTGACTGAAGGATTGC 59.458 38.462 0.00 0.00 0.00 3.56
2617 2635 6.656902 TGATTCTATTGACTGAAGGATTGCT 58.343 36.000 0.00 0.00 0.00 3.91
2618 2636 7.795047 TGATTCTATTGACTGAAGGATTGCTA 58.205 34.615 0.00 0.00 0.00 3.49
2619 2637 8.435187 TGATTCTATTGACTGAAGGATTGCTAT 58.565 33.333 0.00 0.00 0.00 2.97
2620 2638 9.282569 GATTCTATTGACTGAAGGATTGCTATT 57.717 33.333 0.00 0.00 0.00 1.73
2621 2639 8.442632 TTCTATTGACTGAAGGATTGCTATTG 57.557 34.615 0.00 0.00 0.00 1.90
2622 2640 4.970662 TTGACTGAAGGATTGCTATTGC 57.029 40.909 0.00 0.00 40.20 3.56
2623 2641 4.226427 TGACTGAAGGATTGCTATTGCT 57.774 40.909 0.00 0.00 40.48 3.91
2624 2642 3.943381 TGACTGAAGGATTGCTATTGCTG 59.057 43.478 0.00 0.00 40.48 4.41
2625 2643 4.194640 GACTGAAGGATTGCTATTGCTGA 58.805 43.478 0.00 0.00 40.48 4.26
2626 2644 3.944015 ACTGAAGGATTGCTATTGCTGAC 59.056 43.478 0.00 0.00 40.48 3.51
2627 2645 3.943381 CTGAAGGATTGCTATTGCTGACA 59.057 43.478 0.00 0.00 40.48 3.58
2628 2646 4.529897 TGAAGGATTGCTATTGCTGACAT 58.470 39.130 0.00 0.00 40.48 3.06
2629 2647 4.577693 TGAAGGATTGCTATTGCTGACATC 59.422 41.667 0.00 0.00 40.48 3.06
2630 2648 4.434545 AGGATTGCTATTGCTGACATCT 57.565 40.909 0.00 0.00 40.48 2.90
2631 2649 4.789807 AGGATTGCTATTGCTGACATCTT 58.210 39.130 0.00 0.00 40.48 2.40
2632 2650 4.820716 AGGATTGCTATTGCTGACATCTTC 59.179 41.667 0.00 0.00 40.48 2.87
2633 2651 4.820716 GGATTGCTATTGCTGACATCTTCT 59.179 41.667 0.00 0.00 40.48 2.85
2634 2652 5.277876 GGATTGCTATTGCTGACATCTTCTG 60.278 44.000 0.00 0.00 40.48 3.02
2635 2653 4.212143 TGCTATTGCTGACATCTTCTGT 57.788 40.909 0.00 0.00 39.60 3.41
2636 2654 3.937079 TGCTATTGCTGACATCTTCTGTG 59.063 43.478 0.00 0.00 37.99 3.66
2637 2655 4.186926 GCTATTGCTGACATCTTCTGTGA 58.813 43.478 0.00 0.00 35.55 3.58
2638 2656 4.815308 GCTATTGCTGACATCTTCTGTGAT 59.185 41.667 0.00 0.00 35.55 3.06
2639 2657 5.277393 GCTATTGCTGACATCTTCTGTGATG 60.277 44.000 10.23 10.23 41.49 3.07
2640 2658 2.981898 TGCTGACATCTTCTGTGATGG 58.018 47.619 14.20 3.00 45.78 3.51
2641 2659 2.568509 TGCTGACATCTTCTGTGATGGA 59.431 45.455 14.20 4.17 45.78 3.41
2642 2660 3.008266 TGCTGACATCTTCTGTGATGGAA 59.992 43.478 14.20 0.00 45.78 3.53
2643 2661 3.622163 GCTGACATCTTCTGTGATGGAAG 59.378 47.826 14.20 12.00 45.78 3.46
2644 2662 3.603532 TGACATCTTCTGTGATGGAAGC 58.396 45.455 14.20 0.00 45.78 3.86
2645 2663 2.941720 GACATCTTCTGTGATGGAAGCC 59.058 50.000 14.20 0.00 45.78 4.35
2646 2664 1.938577 CATCTTCTGTGATGGAAGCCG 59.061 52.381 0.00 0.00 39.91 5.52
2647 2665 1.266178 TCTTCTGTGATGGAAGCCGA 58.734 50.000 0.00 0.00 39.75 5.54
2648 2666 1.205655 TCTTCTGTGATGGAAGCCGAG 59.794 52.381 0.00 0.00 39.75 4.63
2649 2667 0.250234 TTCTGTGATGGAAGCCGAGG 59.750 55.000 0.00 0.00 0.00 4.63
2650 2668 1.153289 CTGTGATGGAAGCCGAGGG 60.153 63.158 0.00 0.00 0.00 4.30
2651 2669 1.612146 TGTGATGGAAGCCGAGGGA 60.612 57.895 0.00 0.00 0.00 4.20
2652 2670 1.198094 TGTGATGGAAGCCGAGGGAA 61.198 55.000 0.00 0.00 0.00 3.97
2653 2671 0.035439 GTGATGGAAGCCGAGGGAAA 60.035 55.000 0.00 0.00 0.00 3.13
2654 2672 0.253044 TGATGGAAGCCGAGGGAAAG 59.747 55.000 0.00 0.00 0.00 2.62
2655 2673 0.464554 GATGGAAGCCGAGGGAAAGG 60.465 60.000 0.00 0.00 0.00 3.11
2661 2679 3.646715 CCGAGGGAAAGGCCACCA 61.647 66.667 5.01 0.00 38.95 4.17
2662 2680 2.434331 CGAGGGAAAGGCCACCAA 59.566 61.111 5.01 0.00 38.95 3.67
2663 2681 1.675641 CGAGGGAAAGGCCACCAAG 60.676 63.158 5.01 0.00 38.95 3.61
2664 2682 1.767692 GAGGGAAAGGCCACCAAGA 59.232 57.895 5.01 0.00 38.95 3.02
2665 2683 0.322906 GAGGGAAAGGCCACCAAGAG 60.323 60.000 5.01 0.00 38.95 2.85
2666 2684 0.772124 AGGGAAAGGCCACCAAGAGA 60.772 55.000 5.01 0.00 38.95 3.10
2667 2685 0.332972 GGGAAAGGCCACCAAGAGAT 59.667 55.000 5.01 0.00 38.95 2.75
2668 2686 1.272704 GGGAAAGGCCACCAAGAGATT 60.273 52.381 5.01 0.00 38.95 2.40
2669 2687 2.095461 GGAAAGGCCACCAAGAGATTC 58.905 52.381 5.01 0.00 36.34 2.52
2670 2688 1.740025 GAAAGGCCACCAAGAGATTCG 59.260 52.381 5.01 0.00 0.00 3.34
2671 2689 0.035056 AAGGCCACCAAGAGATTCGG 60.035 55.000 5.01 0.00 0.00 4.30
2672 2690 1.452108 GGCCACCAAGAGATTCGGG 60.452 63.158 0.00 0.00 0.00 5.14
2673 2691 1.299976 GCCACCAAGAGATTCGGGT 59.700 57.895 0.00 0.00 30.80 5.28
2674 2692 1.026718 GCCACCAAGAGATTCGGGTG 61.027 60.000 12.87 12.87 42.45 4.61
2675 2693 3.159298 CACCAAGAGATTCGGGTGG 57.841 57.895 12.30 6.51 40.57 4.61
2676 2694 0.392998 CACCAAGAGATTCGGGTGGG 60.393 60.000 12.30 0.00 40.57 4.61
2677 2695 0.840722 ACCAAGAGATTCGGGTGGGT 60.841 55.000 7.26 0.00 33.43 4.51
2678 2696 0.107654 CCAAGAGATTCGGGTGGGTC 60.108 60.000 0.00 0.00 0.00 4.46
2679 2697 0.460284 CAAGAGATTCGGGTGGGTCG 60.460 60.000 0.00 0.00 0.00 4.79
2680 2698 1.614241 AAGAGATTCGGGTGGGTCGG 61.614 60.000 0.00 0.00 0.00 4.79
2681 2699 3.735037 GAGATTCGGGTGGGTCGGC 62.735 68.421 0.00 0.00 0.00 5.54
2682 2700 4.851179 GATTCGGGTGGGTCGGCC 62.851 72.222 0.00 0.00 0.00 6.13
2687 2705 2.686106 GGGTGGGTCGGCCTTCTA 60.686 66.667 5.77 0.00 34.45 2.10
2688 2706 2.070650 GGGTGGGTCGGCCTTCTAT 61.071 63.158 5.77 0.00 34.45 1.98
2689 2707 0.761702 GGGTGGGTCGGCCTTCTATA 60.762 60.000 5.77 0.00 34.45 1.31
2690 2708 1.349067 GGTGGGTCGGCCTTCTATAT 58.651 55.000 5.77 0.00 34.45 0.86
2691 2709 1.697982 GGTGGGTCGGCCTTCTATATT 59.302 52.381 5.77 0.00 34.45 1.28
2692 2710 2.901839 GGTGGGTCGGCCTTCTATATTA 59.098 50.000 5.77 0.00 34.45 0.98
2693 2711 3.306571 GGTGGGTCGGCCTTCTATATTAC 60.307 52.174 5.77 0.00 34.45 1.89
2694 2712 2.901839 TGGGTCGGCCTTCTATATTACC 59.098 50.000 5.77 0.00 34.45 2.85
2695 2713 3.171528 GGGTCGGCCTTCTATATTACCT 58.828 50.000 5.77 0.00 34.45 3.08
2696 2714 4.202706 TGGGTCGGCCTTCTATATTACCTA 60.203 45.833 5.77 0.00 34.45 3.08
2697 2715 4.401837 GGGTCGGCCTTCTATATTACCTAG 59.598 50.000 5.77 0.00 34.45 3.02
2698 2716 5.015515 GGTCGGCCTTCTATATTACCTAGT 58.984 45.833 0.00 0.00 0.00 2.57
2699 2717 5.125257 GGTCGGCCTTCTATATTACCTAGTC 59.875 48.000 0.00 0.00 0.00 2.59
2700 2718 4.940046 TCGGCCTTCTATATTACCTAGTCG 59.060 45.833 0.00 0.00 0.00 4.18
2701 2719 4.438472 CGGCCTTCTATATTACCTAGTCGC 60.438 50.000 0.00 0.00 0.00 5.19
2702 2720 4.142204 GGCCTTCTATATTACCTAGTCGCC 60.142 50.000 0.00 0.00 0.00 5.54
2703 2721 4.142204 GCCTTCTATATTACCTAGTCGCCC 60.142 50.000 0.00 0.00 0.00 6.13
2704 2722 4.096081 CCTTCTATATTACCTAGTCGCCCG 59.904 50.000 0.00 0.00 0.00 6.13
2705 2723 4.292186 TCTATATTACCTAGTCGCCCGT 57.708 45.455 0.00 0.00 0.00 5.28
2706 2724 4.655963 TCTATATTACCTAGTCGCCCGTT 58.344 43.478 0.00 0.00 0.00 4.44
2707 2725 5.804639 TCTATATTACCTAGTCGCCCGTTA 58.195 41.667 0.00 0.00 0.00 3.18
2708 2726 4.773323 ATATTACCTAGTCGCCCGTTAC 57.227 45.455 0.00 0.00 0.00 2.50
2709 2727 0.732571 TTACCTAGTCGCCCGTTACG 59.267 55.000 0.00 0.00 0.00 3.18
2710 2728 0.107897 TACCTAGTCGCCCGTTACGA 60.108 55.000 6.24 0.00 37.17 3.43
2711 2729 0.749454 ACCTAGTCGCCCGTTACGAT 60.749 55.000 6.24 0.00 42.26 3.73
2712 2730 1.229428 CCTAGTCGCCCGTTACGATA 58.771 55.000 6.24 0.00 42.26 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
225 227 3.157087 ACAAAGGCGAAGACAATTCCAT 58.843 40.909 0.00 0.00 39.87 3.41
226 228 2.582052 ACAAAGGCGAAGACAATTCCA 58.418 42.857 0.00 0.00 39.87 3.53
1541 1559 3.120338 GCGGAAAACAAATCGACATCTCA 60.120 43.478 0.00 0.00 0.00 3.27
1554 1572 0.965439 CTCATTTGGGGCGGAAAACA 59.035 50.000 0.00 0.00 0.00 2.83
1748 1766 4.461431 TGTACGAGTCCACAATCACTACAT 59.539 41.667 0.00 0.00 0.00 2.29
1785 1803 3.442625 TCGAGTCTGATACATCAACCGTT 59.557 43.478 0.00 0.00 36.18 4.44
1848 1866 2.098770 GGACACGTAGCTTACCGAATCT 59.901 50.000 0.00 0.00 0.00 2.40
1992 2010 5.627172 CAAATTCTATTTGTTCTTCGCCGA 58.373 37.500 4.40 0.00 0.00 5.54
2027 2045 1.425448 GCAGGAATACCCCCATTAGCT 59.575 52.381 0.00 0.00 36.73 3.32
2074 2092 7.596248 CCAAAATGAATCCTATTTCGGCTATTG 59.404 37.037 0.00 0.00 0.00 1.90
2075 2093 7.661040 CCAAAATGAATCCTATTTCGGCTATT 58.339 34.615 0.00 0.00 0.00 1.73
2260 2278 5.928839 GCTCATAGTTCGATTGGACATGTAT 59.071 40.000 0.00 0.00 0.00 2.29
2316 2334 0.978146 ATCTTAGGAGCACTGGCCGT 60.978 55.000 0.00 0.00 42.56 5.68
2353 2371 6.894339 TCAGTCCATTTTCCTACTTTTTCC 57.106 37.500 0.00 0.00 0.00 3.13
2361 2379 6.780031 TCCAACAATTTCAGTCCATTTTCCTA 59.220 34.615 0.00 0.00 0.00 2.94
2364 2382 9.143631 CTTATCCAACAATTTCAGTCCATTTTC 57.856 33.333 0.00 0.00 0.00 2.29
2365 2383 8.650490 ACTTATCCAACAATTTCAGTCCATTTT 58.350 29.630 0.00 0.00 0.00 1.82
2366 2384 8.090214 CACTTATCCAACAATTTCAGTCCATTT 58.910 33.333 0.00 0.00 0.00 2.32
2367 2385 7.309990 CCACTTATCCAACAATTTCAGTCCATT 60.310 37.037 0.00 0.00 0.00 3.16
2368 2386 6.153340 CCACTTATCCAACAATTTCAGTCCAT 59.847 38.462 0.00 0.00 0.00 3.41
2369 2387 5.476599 CCACTTATCCAACAATTTCAGTCCA 59.523 40.000 0.00 0.00 0.00 4.02
2370 2388 5.710099 TCCACTTATCCAACAATTTCAGTCC 59.290 40.000 0.00 0.00 0.00 3.85
2371 2389 6.817765 TCCACTTATCCAACAATTTCAGTC 57.182 37.500 0.00 0.00 0.00 3.51
2372 2390 7.781324 AATCCACTTATCCAACAATTTCAGT 57.219 32.000 0.00 0.00 0.00 3.41
2373 2391 7.063780 GCAAATCCACTTATCCAACAATTTCAG 59.936 37.037 0.00 0.00 0.00 3.02
2374 2392 6.873076 GCAAATCCACTTATCCAACAATTTCA 59.127 34.615 0.00 0.00 0.00 2.69
2375 2393 6.873076 TGCAAATCCACTTATCCAACAATTTC 59.127 34.615 0.00 0.00 0.00 2.17
2376 2394 6.767456 TGCAAATCCACTTATCCAACAATTT 58.233 32.000 0.00 0.00 0.00 1.82
2377 2395 6.014327 ACTGCAAATCCACTTATCCAACAATT 60.014 34.615 0.00 0.00 0.00 2.32
2378 2396 5.481473 ACTGCAAATCCACTTATCCAACAAT 59.519 36.000 0.00 0.00 0.00 2.71
2379 2397 4.832266 ACTGCAAATCCACTTATCCAACAA 59.168 37.500 0.00 0.00 0.00 2.83
2380 2398 4.406456 ACTGCAAATCCACTTATCCAACA 58.594 39.130 0.00 0.00 0.00 3.33
2381 2399 6.543831 AGATACTGCAAATCCACTTATCCAAC 59.456 38.462 5.33 0.00 0.00 3.77
2382 2400 6.662755 AGATACTGCAAATCCACTTATCCAA 58.337 36.000 5.33 0.00 0.00 3.53
2383 2401 6.126796 TGAGATACTGCAAATCCACTTATCCA 60.127 38.462 5.33 0.00 0.00 3.41
2384 2402 6.291377 TGAGATACTGCAAATCCACTTATCC 58.709 40.000 5.33 0.00 0.00 2.59
2385 2403 7.280876 TGTTGAGATACTGCAAATCCACTTATC 59.719 37.037 5.33 0.00 0.00 1.75
2386 2404 7.112122 TGTTGAGATACTGCAAATCCACTTAT 58.888 34.615 5.33 0.00 0.00 1.73
2387 2405 6.472016 TGTTGAGATACTGCAAATCCACTTA 58.528 36.000 5.33 0.00 0.00 2.24
2388 2406 5.316167 TGTTGAGATACTGCAAATCCACTT 58.684 37.500 5.33 0.00 0.00 3.16
2389 2407 4.910195 TGTTGAGATACTGCAAATCCACT 58.090 39.130 5.33 0.00 0.00 4.00
2390 2408 5.627499 TTGTTGAGATACTGCAAATCCAC 57.373 39.130 5.33 2.28 0.00 4.02
2391 2409 5.945191 TGATTGTTGAGATACTGCAAATCCA 59.055 36.000 5.33 1.96 0.00 3.41
2392 2410 6.317140 TCTGATTGTTGAGATACTGCAAATCC 59.683 38.462 5.33 0.00 0.00 3.01
2393 2411 7.312657 TCTGATTGTTGAGATACTGCAAATC 57.687 36.000 1.28 1.28 0.00 2.17
2394 2412 7.175467 TGTTCTGATTGTTGAGATACTGCAAAT 59.825 33.333 0.00 0.00 0.00 2.32
2395 2413 6.486320 TGTTCTGATTGTTGAGATACTGCAAA 59.514 34.615 0.00 0.00 0.00 3.68
2396 2414 5.997129 TGTTCTGATTGTTGAGATACTGCAA 59.003 36.000 0.00 0.00 0.00 4.08
2397 2415 5.550290 TGTTCTGATTGTTGAGATACTGCA 58.450 37.500 0.00 0.00 0.00 4.41
2398 2416 5.641209 ACTGTTCTGATTGTTGAGATACTGC 59.359 40.000 0.00 0.00 0.00 4.40
2399 2417 6.870439 TCACTGTTCTGATTGTTGAGATACTG 59.130 38.462 0.00 0.00 0.00 2.74
2400 2418 6.997655 TCACTGTTCTGATTGTTGAGATACT 58.002 36.000 0.00 0.00 0.00 2.12
2401 2419 7.658179 TTCACTGTTCTGATTGTTGAGATAC 57.342 36.000 0.00 0.00 0.00 2.24
2403 2421 9.458727 AATATTCACTGTTCTGATTGTTGAGAT 57.541 29.630 0.00 0.00 0.00 2.75
2404 2422 8.853077 AATATTCACTGTTCTGATTGTTGAGA 57.147 30.769 0.00 0.00 0.00 3.27
2405 2423 8.180267 GGAATATTCACTGTTCTGATTGTTGAG 58.820 37.037 17.07 0.00 0.00 3.02
2406 2424 7.665145 TGGAATATTCACTGTTCTGATTGTTGA 59.335 33.333 17.07 0.00 0.00 3.18
2407 2425 7.819644 TGGAATATTCACTGTTCTGATTGTTG 58.180 34.615 17.07 0.00 0.00 3.33
2408 2426 8.585471 ATGGAATATTCACTGTTCTGATTGTT 57.415 30.769 17.07 0.00 0.00 2.83
2409 2427 7.830697 TGATGGAATATTCACTGTTCTGATTGT 59.169 33.333 17.07 0.00 0.00 2.71
2410 2428 8.217131 TGATGGAATATTCACTGTTCTGATTG 57.783 34.615 17.07 0.00 0.00 2.67
2411 2429 8.991783 ATGATGGAATATTCACTGTTCTGATT 57.008 30.769 17.07 0.00 0.00 2.57
2412 2430 7.664731 GGATGATGGAATATTCACTGTTCTGAT 59.335 37.037 17.07 0.00 0.00 2.90
2413 2431 6.994496 GGATGATGGAATATTCACTGTTCTGA 59.006 38.462 17.07 0.00 0.00 3.27
2414 2432 6.769341 TGGATGATGGAATATTCACTGTTCTG 59.231 38.462 17.07 0.00 0.00 3.02
2415 2433 6.903516 TGGATGATGGAATATTCACTGTTCT 58.096 36.000 17.07 0.00 0.00 3.01
2416 2434 7.572523 TTGGATGATGGAATATTCACTGTTC 57.427 36.000 17.07 7.81 0.00 3.18
2417 2435 7.616935 AGTTTGGATGATGGAATATTCACTGTT 59.383 33.333 17.07 0.00 0.00 3.16
2418 2436 7.121382 AGTTTGGATGATGGAATATTCACTGT 58.879 34.615 17.07 0.00 0.00 3.55
2419 2437 7.578310 AGTTTGGATGATGGAATATTCACTG 57.422 36.000 17.07 0.00 0.00 3.66
2420 2438 9.347240 CTTAGTTTGGATGATGGAATATTCACT 57.653 33.333 17.07 9.68 0.00 3.41
2421 2439 8.078596 GCTTAGTTTGGATGATGGAATATTCAC 58.921 37.037 17.07 7.28 0.00 3.18
2422 2440 8.000709 AGCTTAGTTTGGATGATGGAATATTCA 58.999 33.333 17.07 4.18 0.00 2.57
2423 2441 8.401490 AGCTTAGTTTGGATGATGGAATATTC 57.599 34.615 6.93 6.93 0.00 1.75
2424 2442 8.773033 AAGCTTAGTTTGGATGATGGAATATT 57.227 30.769 0.00 0.00 0.00 1.28
2425 2443 7.449704 GGAAGCTTAGTTTGGATGATGGAATAT 59.550 37.037 0.00 0.00 0.00 1.28
2426 2444 6.772716 GGAAGCTTAGTTTGGATGATGGAATA 59.227 38.462 0.00 0.00 0.00 1.75
2427 2445 5.595952 GGAAGCTTAGTTTGGATGATGGAAT 59.404 40.000 0.00 0.00 0.00 3.01
2428 2446 4.949856 GGAAGCTTAGTTTGGATGATGGAA 59.050 41.667 0.00 0.00 0.00 3.53
2429 2447 4.228210 AGGAAGCTTAGTTTGGATGATGGA 59.772 41.667 0.00 0.00 0.00 3.41
2430 2448 4.530875 AGGAAGCTTAGTTTGGATGATGG 58.469 43.478 0.00 0.00 0.00 3.51
2431 2449 5.188434 TGAGGAAGCTTAGTTTGGATGATG 58.812 41.667 0.00 0.00 0.00 3.07
2432 2450 5.190528 TCTGAGGAAGCTTAGTTTGGATGAT 59.809 40.000 0.00 0.00 0.00 2.45
2433 2451 4.532126 TCTGAGGAAGCTTAGTTTGGATGA 59.468 41.667 0.00 0.00 0.00 2.92
2434 2452 4.836825 TCTGAGGAAGCTTAGTTTGGATG 58.163 43.478 0.00 0.00 0.00 3.51
2435 2453 5.397334 GGATCTGAGGAAGCTTAGTTTGGAT 60.397 44.000 0.00 0.00 0.00 3.41
2436 2454 4.080863 GGATCTGAGGAAGCTTAGTTTGGA 60.081 45.833 0.00 0.00 0.00 3.53
2437 2455 4.080638 AGGATCTGAGGAAGCTTAGTTTGG 60.081 45.833 0.00 0.00 0.00 3.28
2438 2456 5.096443 AGGATCTGAGGAAGCTTAGTTTG 57.904 43.478 0.00 0.00 0.00 2.93
2439 2457 6.352308 GGTTAGGATCTGAGGAAGCTTAGTTT 60.352 42.308 0.00 0.00 0.00 2.66
2440 2458 5.129650 GGTTAGGATCTGAGGAAGCTTAGTT 59.870 44.000 0.00 0.00 0.00 2.24
2441 2459 4.651962 GGTTAGGATCTGAGGAAGCTTAGT 59.348 45.833 0.00 0.00 0.00 2.24
2442 2460 4.039852 GGGTTAGGATCTGAGGAAGCTTAG 59.960 50.000 0.00 0.00 0.00 2.18
2443 2461 3.967987 GGGTTAGGATCTGAGGAAGCTTA 59.032 47.826 0.00 0.00 0.00 3.09
2444 2462 2.774809 GGGTTAGGATCTGAGGAAGCTT 59.225 50.000 0.00 0.00 0.00 3.74
2445 2463 2.293184 TGGGTTAGGATCTGAGGAAGCT 60.293 50.000 0.00 0.00 0.00 3.74
2446 2464 2.119495 TGGGTTAGGATCTGAGGAAGC 58.881 52.381 0.00 0.00 0.00 3.86
2447 2465 4.445448 CCAATGGGTTAGGATCTGAGGAAG 60.445 50.000 0.00 0.00 0.00 3.46
2448 2466 3.459598 CCAATGGGTTAGGATCTGAGGAA 59.540 47.826 0.00 0.00 0.00 3.36
2449 2467 3.048600 CCAATGGGTTAGGATCTGAGGA 58.951 50.000 0.00 0.00 0.00 3.71
2450 2468 3.498774 CCAATGGGTTAGGATCTGAGG 57.501 52.381 0.00 0.00 0.00 3.86
2463 2481 2.154462 GGCTCGATAATGACCAATGGG 58.846 52.381 3.55 0.00 41.29 4.00
2464 2482 3.070018 GAGGCTCGATAATGACCAATGG 58.930 50.000 0.00 0.00 0.00 3.16
2465 2483 2.733552 CGAGGCTCGATAATGACCAATG 59.266 50.000 32.07 0.00 43.74 2.82
2466 2484 2.365617 ACGAGGCTCGATAATGACCAAT 59.634 45.455 40.35 13.03 43.74 3.16
2467 2485 1.754803 ACGAGGCTCGATAATGACCAA 59.245 47.619 40.35 0.00 43.74 3.67
2468 2486 1.067060 CACGAGGCTCGATAATGACCA 59.933 52.381 40.35 0.00 43.74 4.02
2469 2487 1.337071 TCACGAGGCTCGATAATGACC 59.663 52.381 40.35 0.00 43.74 4.02
2470 2488 2.033550 AGTCACGAGGCTCGATAATGAC 59.966 50.000 40.35 36.17 43.74 3.06
2471 2489 2.290916 GAGTCACGAGGCTCGATAATGA 59.709 50.000 40.35 29.33 43.74 2.57
2472 2490 2.605823 GGAGTCACGAGGCTCGATAATG 60.606 54.545 40.35 27.64 43.74 1.90
2473 2491 1.609555 GGAGTCACGAGGCTCGATAAT 59.390 52.381 40.35 26.19 43.74 1.28
2474 2492 1.022735 GGAGTCACGAGGCTCGATAA 58.977 55.000 40.35 22.47 43.74 1.75
2475 2493 1.158484 CGGAGTCACGAGGCTCGATA 61.158 60.000 40.35 24.93 43.74 2.92
2476 2494 2.473760 CGGAGTCACGAGGCTCGAT 61.474 63.158 40.35 22.79 43.74 3.59
2477 2495 3.125573 CGGAGTCACGAGGCTCGA 61.126 66.667 40.35 19.05 43.74 4.04
2478 2496 4.180946 CCGGAGTCACGAGGCTCG 62.181 72.222 33.42 33.42 46.93 5.03
2479 2497 4.500116 GCCGGAGTCACGAGGCTC 62.500 72.222 5.05 5.85 45.67 4.70
2482 2500 3.374402 ACAGCCGGAGTCACGAGG 61.374 66.667 5.05 0.00 35.47 4.63
2483 2501 2.126307 CACAGCCGGAGTCACGAG 60.126 66.667 5.05 0.00 35.47 4.18
2484 2502 2.495409 AACACAGCCGGAGTCACGA 61.495 57.895 5.05 0.00 35.47 4.35
2485 2503 2.029073 AACACAGCCGGAGTCACG 59.971 61.111 5.05 0.00 0.00 4.35
2486 2504 0.320771 ATCAACACAGCCGGAGTCAC 60.321 55.000 5.05 0.00 0.00 3.67
2487 2505 1.262417 TATCAACACAGCCGGAGTCA 58.738 50.000 5.05 0.00 0.00 3.41
2488 2506 2.101582 AGATATCAACACAGCCGGAGTC 59.898 50.000 5.05 0.00 0.00 3.36
2489 2507 2.111384 AGATATCAACACAGCCGGAGT 58.889 47.619 5.05 0.00 0.00 3.85
2490 2508 2.898729 AGATATCAACACAGCCGGAG 57.101 50.000 5.05 0.00 0.00 4.63
2491 2509 2.481276 CGAAGATATCAACACAGCCGGA 60.481 50.000 5.05 0.00 0.00 5.14
2492 2510 1.860950 CGAAGATATCAACACAGCCGG 59.139 52.381 5.32 0.00 0.00 6.13
2493 2511 2.540515 ACGAAGATATCAACACAGCCG 58.459 47.619 5.32 0.00 0.00 5.52
2494 2512 6.145696 GGTAATACGAAGATATCAACACAGCC 59.854 42.308 5.32 0.00 0.00 4.85
2495 2513 6.924060 AGGTAATACGAAGATATCAACACAGC 59.076 38.462 5.32 0.00 0.00 4.40
2496 2514 7.921214 ACAGGTAATACGAAGATATCAACACAG 59.079 37.037 5.32 0.00 0.00 3.66
2497 2515 7.778083 ACAGGTAATACGAAGATATCAACACA 58.222 34.615 5.32 0.00 0.00 3.72
2498 2516 8.644318 AACAGGTAATACGAAGATATCAACAC 57.356 34.615 5.32 0.00 0.00 3.32
2517 2535 8.964533 ACCAGATAGATAGAATGATAACAGGT 57.035 34.615 0.00 0.00 0.00 4.00
2532 2550 9.632638 AACACATAAAGCAATAACCAGATAGAT 57.367 29.630 0.00 0.00 0.00 1.98
2533 2551 8.892723 CAACACATAAAGCAATAACCAGATAGA 58.107 33.333 0.00 0.00 0.00 1.98
2534 2552 8.131100 CCAACACATAAAGCAATAACCAGATAG 58.869 37.037 0.00 0.00 0.00 2.08
2535 2553 7.613801 ACCAACACATAAAGCAATAACCAGATA 59.386 33.333 0.00 0.00 0.00 1.98
2536 2554 6.437162 ACCAACACATAAAGCAATAACCAGAT 59.563 34.615 0.00 0.00 0.00 2.90
2537 2555 5.772672 ACCAACACATAAAGCAATAACCAGA 59.227 36.000 0.00 0.00 0.00 3.86
2538 2556 6.024552 ACCAACACATAAAGCAATAACCAG 57.975 37.500 0.00 0.00 0.00 4.00
2539 2557 6.219473 CAACCAACACATAAAGCAATAACCA 58.781 36.000 0.00 0.00 0.00 3.67
2540 2558 5.637387 CCAACCAACACATAAAGCAATAACC 59.363 40.000 0.00 0.00 0.00 2.85
2541 2559 6.220201 ACCAACCAACACATAAAGCAATAAC 58.780 36.000 0.00 0.00 0.00 1.89
2542 2560 6.412362 ACCAACCAACACATAAAGCAATAA 57.588 33.333 0.00 0.00 0.00 1.40
2543 2561 7.710676 ATACCAACCAACACATAAAGCAATA 57.289 32.000 0.00 0.00 0.00 1.90
2544 2562 4.953940 ACCAACCAACACATAAAGCAAT 57.046 36.364 0.00 0.00 0.00 3.56
2545 2563 6.412362 AATACCAACCAACACATAAAGCAA 57.588 33.333 0.00 0.00 0.00 3.91
2546 2564 6.040955 TGAAATACCAACCAACACATAAAGCA 59.959 34.615 0.00 0.00 0.00 3.91
2547 2565 6.364976 GTGAAATACCAACCAACACATAAAGC 59.635 38.462 0.00 0.00 0.00 3.51
2548 2566 7.657336 AGTGAAATACCAACCAACACATAAAG 58.343 34.615 0.00 0.00 0.00 1.85
2549 2567 7.589958 AGTGAAATACCAACCAACACATAAA 57.410 32.000 0.00 0.00 0.00 1.40
2550 2568 8.871629 ATAGTGAAATACCAACCAACACATAA 57.128 30.769 0.00 0.00 0.00 1.90
2551 2569 8.871629 AATAGTGAAATACCAACCAACACATA 57.128 30.769 0.00 0.00 0.00 2.29
2552 2570 7.775053 AATAGTGAAATACCAACCAACACAT 57.225 32.000 0.00 0.00 0.00 3.21
2553 2571 7.589958 AAATAGTGAAATACCAACCAACACA 57.410 32.000 0.00 0.00 0.00 3.72
2554 2572 9.620660 CTTAAATAGTGAAATACCAACCAACAC 57.379 33.333 0.00 0.00 0.00 3.32
2555 2573 9.357161 ACTTAAATAGTGAAATACCAACCAACA 57.643 29.630 0.00 0.00 35.19 3.33
2585 2603 8.037758 CCTTCAGTCAATAGAATCAGTAACTGT 58.962 37.037 0.00 0.00 35.53 3.55
2586 2604 8.253810 TCCTTCAGTCAATAGAATCAGTAACTG 58.746 37.037 0.00 0.00 35.38 3.16
2587 2605 8.367660 TCCTTCAGTCAATAGAATCAGTAACT 57.632 34.615 0.00 0.00 0.00 2.24
2588 2606 9.606631 AATCCTTCAGTCAATAGAATCAGTAAC 57.393 33.333 0.00 0.00 0.00 2.50
2589 2607 9.605275 CAATCCTTCAGTCAATAGAATCAGTAA 57.395 33.333 0.00 0.00 0.00 2.24
2590 2608 7.712639 GCAATCCTTCAGTCAATAGAATCAGTA 59.287 37.037 0.00 0.00 0.00 2.74
2591 2609 6.541641 GCAATCCTTCAGTCAATAGAATCAGT 59.458 38.462 0.00 0.00 0.00 3.41
2592 2610 6.766944 AGCAATCCTTCAGTCAATAGAATCAG 59.233 38.462 0.00 0.00 0.00 2.90
2593 2611 6.656902 AGCAATCCTTCAGTCAATAGAATCA 58.343 36.000 0.00 0.00 0.00 2.57
2594 2612 8.845413 ATAGCAATCCTTCAGTCAATAGAATC 57.155 34.615 0.00 0.00 0.00 2.52
2595 2613 9.064706 CAATAGCAATCCTTCAGTCAATAGAAT 57.935 33.333 0.00 0.00 0.00 2.40
2596 2614 7.012704 GCAATAGCAATCCTTCAGTCAATAGAA 59.987 37.037 0.00 0.00 41.58 2.10
2597 2615 6.484643 GCAATAGCAATCCTTCAGTCAATAGA 59.515 38.462 0.00 0.00 41.58 1.98
2598 2616 6.485984 AGCAATAGCAATCCTTCAGTCAATAG 59.514 38.462 0.00 0.00 45.49 1.73
2599 2617 6.261603 CAGCAATAGCAATCCTTCAGTCAATA 59.738 38.462 0.00 0.00 45.49 1.90
2600 2618 5.067413 CAGCAATAGCAATCCTTCAGTCAAT 59.933 40.000 0.00 0.00 45.49 2.57
2601 2619 4.397103 CAGCAATAGCAATCCTTCAGTCAA 59.603 41.667 0.00 0.00 45.49 3.18
2602 2620 3.943381 CAGCAATAGCAATCCTTCAGTCA 59.057 43.478 0.00 0.00 45.49 3.41
2603 2621 4.034975 GTCAGCAATAGCAATCCTTCAGTC 59.965 45.833 0.00 0.00 45.49 3.51
2604 2622 3.944015 GTCAGCAATAGCAATCCTTCAGT 59.056 43.478 0.00 0.00 45.49 3.41
2605 2623 3.943381 TGTCAGCAATAGCAATCCTTCAG 59.057 43.478 0.00 0.00 45.49 3.02
2606 2624 3.954200 TGTCAGCAATAGCAATCCTTCA 58.046 40.909 0.00 0.00 45.49 3.02
2607 2625 4.820716 AGATGTCAGCAATAGCAATCCTTC 59.179 41.667 0.00 0.00 45.49 3.46
2608 2626 4.789807 AGATGTCAGCAATAGCAATCCTT 58.210 39.130 0.00 0.00 45.49 3.36
2609 2627 4.434545 AGATGTCAGCAATAGCAATCCT 57.565 40.909 0.00 0.00 45.49 3.24
2610 2628 4.820716 AGAAGATGTCAGCAATAGCAATCC 59.179 41.667 0.00 0.00 45.49 3.01
2611 2629 5.296283 ACAGAAGATGTCAGCAATAGCAATC 59.704 40.000 0.00 0.00 40.16 2.67
2612 2630 5.066117 CACAGAAGATGTCAGCAATAGCAAT 59.934 40.000 0.00 0.00 41.41 3.56
2613 2631 4.393990 CACAGAAGATGTCAGCAATAGCAA 59.606 41.667 0.00 0.00 41.41 3.91
2614 2632 3.937079 CACAGAAGATGTCAGCAATAGCA 59.063 43.478 0.00 0.00 41.41 3.49
2615 2633 4.186926 TCACAGAAGATGTCAGCAATAGC 58.813 43.478 0.00 0.00 41.41 2.97
2616 2634 5.236695 CCATCACAGAAGATGTCAGCAATAG 59.763 44.000 0.00 0.00 41.41 1.73
2617 2635 5.104817 TCCATCACAGAAGATGTCAGCAATA 60.105 40.000 0.00 0.00 41.41 1.90
2618 2636 3.945921 CCATCACAGAAGATGTCAGCAAT 59.054 43.478 0.00 0.00 41.41 3.56
2619 2637 3.008266 TCCATCACAGAAGATGTCAGCAA 59.992 43.478 0.00 0.00 41.41 3.91
2620 2638 2.568509 TCCATCACAGAAGATGTCAGCA 59.431 45.455 0.00 0.00 41.41 4.41
2621 2639 3.257469 TCCATCACAGAAGATGTCAGC 57.743 47.619 0.00 0.00 41.41 4.26
2622 2640 3.622163 GCTTCCATCACAGAAGATGTCAG 59.378 47.826 4.75 0.00 42.80 3.51
2623 2641 3.603532 GCTTCCATCACAGAAGATGTCA 58.396 45.455 4.75 0.00 42.80 3.58
2624 2642 2.941720 GGCTTCCATCACAGAAGATGTC 59.058 50.000 4.75 0.00 42.80 3.06
2625 2643 2.679059 CGGCTTCCATCACAGAAGATGT 60.679 50.000 4.75 0.00 42.80 3.06
2626 2644 1.938577 CGGCTTCCATCACAGAAGATG 59.061 52.381 4.75 0.00 42.80 2.90
2627 2645 1.833630 TCGGCTTCCATCACAGAAGAT 59.166 47.619 4.75 0.00 42.80 2.40
2628 2646 1.205655 CTCGGCTTCCATCACAGAAGA 59.794 52.381 4.75 0.00 42.80 2.87
2629 2647 1.649664 CTCGGCTTCCATCACAGAAG 58.350 55.000 0.00 0.00 42.99 2.85
2630 2648 0.250234 CCTCGGCTTCCATCACAGAA 59.750 55.000 0.00 0.00 0.00 3.02
2631 2649 1.617018 CCCTCGGCTTCCATCACAGA 61.617 60.000 0.00 0.00 0.00 3.41
2632 2650 1.153289 CCCTCGGCTTCCATCACAG 60.153 63.158 0.00 0.00 0.00 3.66
2633 2651 1.198094 TTCCCTCGGCTTCCATCACA 61.198 55.000 0.00 0.00 0.00 3.58
2634 2652 0.035439 TTTCCCTCGGCTTCCATCAC 60.035 55.000 0.00 0.00 0.00 3.06
2635 2653 0.253044 CTTTCCCTCGGCTTCCATCA 59.747 55.000 0.00 0.00 0.00 3.07
2636 2654 0.464554 CCTTTCCCTCGGCTTCCATC 60.465 60.000 0.00 0.00 0.00 3.51
2637 2655 1.609783 CCTTTCCCTCGGCTTCCAT 59.390 57.895 0.00 0.00 0.00 3.41
2638 2656 3.077907 CCTTTCCCTCGGCTTCCA 58.922 61.111 0.00 0.00 0.00 3.53
2639 2657 2.438614 GCCTTTCCCTCGGCTTCC 60.439 66.667 0.00 0.00 42.98 3.46
2640 2658 2.438614 GGCCTTTCCCTCGGCTTC 60.439 66.667 0.00 0.00 45.57 3.86
2641 2659 3.256960 TGGCCTTTCCCTCGGCTT 61.257 61.111 3.32 0.00 45.57 4.35
2642 2660 4.035102 GTGGCCTTTCCCTCGGCT 62.035 66.667 3.32 0.00 45.57 5.52
2644 2662 3.204467 TTGGTGGCCTTTCCCTCGG 62.204 63.158 3.32 0.00 0.00 4.63
2645 2663 1.675641 CTTGGTGGCCTTTCCCTCG 60.676 63.158 3.32 0.00 0.00 4.63
2646 2664 0.322906 CTCTTGGTGGCCTTTCCCTC 60.323 60.000 3.32 0.00 0.00 4.30
2647 2665 0.772124 TCTCTTGGTGGCCTTTCCCT 60.772 55.000 3.32 0.00 0.00 4.20
2648 2666 0.332972 ATCTCTTGGTGGCCTTTCCC 59.667 55.000 3.32 0.00 0.00 3.97
2649 2667 2.095461 GAATCTCTTGGTGGCCTTTCC 58.905 52.381 3.32 4.67 0.00 3.13
2650 2668 1.740025 CGAATCTCTTGGTGGCCTTTC 59.260 52.381 3.32 0.00 0.00 2.62
2651 2669 1.614317 CCGAATCTCTTGGTGGCCTTT 60.614 52.381 3.32 0.00 0.00 3.11
2652 2670 0.035056 CCGAATCTCTTGGTGGCCTT 60.035 55.000 3.32 0.00 0.00 4.35
2653 2671 1.604378 CCGAATCTCTTGGTGGCCT 59.396 57.895 3.32 0.00 0.00 5.19
2654 2672 1.452108 CCCGAATCTCTTGGTGGCC 60.452 63.158 0.00 0.00 0.00 5.36
2655 2673 1.026718 CACCCGAATCTCTTGGTGGC 61.027 60.000 0.00 0.00 43.60 5.01
2656 2674 3.159298 CACCCGAATCTCTTGGTGG 57.841 57.895 0.00 0.00 43.60 4.61
2657 2675 0.392998 CCCACCCGAATCTCTTGGTG 60.393 60.000 0.00 0.00 46.22 4.17
2658 2676 0.840722 ACCCACCCGAATCTCTTGGT 60.841 55.000 0.00 0.00 0.00 3.67
2659 2677 0.107654 GACCCACCCGAATCTCTTGG 60.108 60.000 0.00 0.00 0.00 3.61
2660 2678 0.460284 CGACCCACCCGAATCTCTTG 60.460 60.000 0.00 0.00 0.00 3.02
2661 2679 1.614241 CCGACCCACCCGAATCTCTT 61.614 60.000 0.00 0.00 0.00 2.85
2662 2680 2.058595 CCGACCCACCCGAATCTCT 61.059 63.158 0.00 0.00 0.00 3.10
2663 2681 2.499685 CCGACCCACCCGAATCTC 59.500 66.667 0.00 0.00 0.00 2.75
2664 2682 3.782443 GCCGACCCACCCGAATCT 61.782 66.667 0.00 0.00 0.00 2.40
2665 2683 4.851179 GGCCGACCCACCCGAATC 62.851 72.222 0.00 0.00 0.00 2.52
2670 2688 0.761702 TATAGAAGGCCGACCCACCC 60.762 60.000 0.00 0.00 36.11 4.61
2671 2689 1.349067 ATATAGAAGGCCGACCCACC 58.651 55.000 0.00 0.00 36.11 4.61
2672 2690 3.306571 GGTAATATAGAAGGCCGACCCAC 60.307 52.174 0.00 0.00 36.11 4.61
2673 2691 2.901839 GGTAATATAGAAGGCCGACCCA 59.098 50.000 0.00 0.00 36.11 4.51
2674 2692 3.171528 AGGTAATATAGAAGGCCGACCC 58.828 50.000 0.00 0.00 36.11 4.46
2675 2693 5.015515 ACTAGGTAATATAGAAGGCCGACC 58.984 45.833 0.00 0.00 0.00 4.79
2676 2694 5.163774 CGACTAGGTAATATAGAAGGCCGAC 60.164 48.000 0.00 0.00 0.00 4.79
2677 2695 4.940046 CGACTAGGTAATATAGAAGGCCGA 59.060 45.833 0.00 0.00 0.00 5.54
2678 2696 4.438472 GCGACTAGGTAATATAGAAGGCCG 60.438 50.000 0.00 0.00 0.00 6.13
2679 2697 4.142204 GGCGACTAGGTAATATAGAAGGCC 60.142 50.000 0.00 0.00 0.00 5.19
2680 2698 4.142204 GGGCGACTAGGTAATATAGAAGGC 60.142 50.000 0.00 0.00 0.00 4.35
2681 2699 4.096081 CGGGCGACTAGGTAATATAGAAGG 59.904 50.000 0.00 0.00 0.00 3.46
2682 2700 4.699257 ACGGGCGACTAGGTAATATAGAAG 59.301 45.833 0.00 0.00 0.00 2.85
2683 2701 4.655963 ACGGGCGACTAGGTAATATAGAA 58.344 43.478 0.00 0.00 0.00 2.10
2684 2702 4.292186 ACGGGCGACTAGGTAATATAGA 57.708 45.455 0.00 0.00 0.00 1.98
2685 2703 5.446473 CGTAACGGGCGACTAGGTAATATAG 60.446 48.000 0.00 0.00 0.00 1.31
2686 2704 4.391830 CGTAACGGGCGACTAGGTAATATA 59.608 45.833 0.00 0.00 0.00 0.86
2687 2705 3.189287 CGTAACGGGCGACTAGGTAATAT 59.811 47.826 0.00 0.00 0.00 1.28
2688 2706 2.548057 CGTAACGGGCGACTAGGTAATA 59.452 50.000 0.00 0.00 0.00 0.98
2689 2707 1.334869 CGTAACGGGCGACTAGGTAAT 59.665 52.381 0.00 0.00 0.00 1.89
2690 2708 0.732571 CGTAACGGGCGACTAGGTAA 59.267 55.000 0.00 0.00 0.00 2.85
2691 2709 0.107897 TCGTAACGGGCGACTAGGTA 60.108 55.000 0.00 0.00 33.09 3.08
2692 2710 0.749454 ATCGTAACGGGCGACTAGGT 60.749 55.000 0.00 0.00 41.33 3.08
2693 2711 1.229428 TATCGTAACGGGCGACTAGG 58.771 55.000 0.00 0.00 41.33 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.