Multiple sequence alignment - TraesCS2B01G283300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G283300 chr2B 100.000 2234 0 0 1 2234 391144827 391142594 0.000000e+00 4126
1 TraesCS2B01G283300 chr2B 97.893 1566 28 2 1 1561 391225217 391226782 0.000000e+00 2704
2 TraesCS2B01G283300 chr6B 98.657 1564 18 2 1 1561 596601834 596603397 0.000000e+00 2769
3 TraesCS2B01G283300 chr6B 98.864 440 5 0 1795 2234 394416627 394417066 0.000000e+00 785
4 TraesCS2B01G283300 chr6B 98.864 440 5 0 1795 2234 596603449 596603888 0.000000e+00 785
5 TraesCS2B01G283300 chr6B 98.639 441 5 1 1795 2234 715992926 715993366 0.000000e+00 780
6 TraesCS2B01G283300 chr6B 98.636 440 5 1 1795 2234 503849007 503848569 0.000000e+00 778
7 TraesCS2B01G283300 chr6B 98.409 440 7 0 1795 2234 307026221 307025782 0.000000e+00 774
8 TraesCS2B01G283300 chr6B 97.321 224 6 0 1570 1793 551033909 551034132 4.500000e-102 381
9 TraesCS2B01G283300 chrUn 98.592 1563 20 1 1 1561 171008310 171006748 0.000000e+00 2763
10 TraesCS2B01G283300 chrUn 98.864 440 5 0 1795 2234 171006696 171006257 0.000000e+00 785
11 TraesCS2B01G283300 chr7A 98.465 1564 21 1 1 1561 638507640 638509203 0.000000e+00 2752
12 TraesCS2B01G283300 chr7A 98.146 1564 24 3 1 1561 708245649 708244088 0.000000e+00 2723
13 TraesCS2B01G283300 chr7A 98.864 440 5 0 1795 2234 638509255 638509694 0.000000e+00 785
14 TraesCS2B01G283300 chr7A 98.413 441 6 1 1795 2234 708244036 708243596 0.000000e+00 774
15 TraesCS2B01G283300 chr5B 98.339 1565 22 2 1 1561 567280020 567278456 0.000000e+00 2743
16 TraesCS2B01G283300 chr5B 96.413 223 8 0 1570 1792 462552702 462552924 3.500000e-98 368
17 TraesCS2B01G283300 chr1B 98.079 1562 28 2 1 1561 672541246 672539686 0.000000e+00 2717
18 TraesCS2B01G283300 chr1B 98.864 440 5 0 1795 2234 672539634 672539195 0.000000e+00 785
19 TraesCS2B01G283300 chr7D 97.954 1564 28 3 1 1561 382089823 382088261 0.000000e+00 2708
20 TraesCS2B01G283300 chr7D 97.829 1566 26 3 1 1561 626711171 626712733 0.000000e+00 2697
21 TraesCS2B01G283300 chr5A 96.875 224 2 2 1570 1793 587413337 587413119 9.740000e-99 370
22 TraesCS2B01G283300 chr5D 95.089 224 11 0 1571 1794 385114175 385114398 9.810000e-94 353
23 TraesCS2B01G283300 chr5D 89.333 225 21 2 1570 1794 11144771 11144992 1.690000e-71 279
24 TraesCS2B01G283300 chr3B 93.363 226 13 2 1570 1794 473185760 473185984 1.280000e-87 333
25 TraesCS2B01G283300 chr3A 94.118 204 9 3 1588 1790 484106936 484107137 7.750000e-80 307
26 TraesCS2B01G283300 chr3A 89.912 228 15 5 1570 1791 721451494 721451269 1.010000e-73 287
27 TraesCS2B01G283300 chr3A 89.035 228 17 6 1570 1791 721257311 721257536 2.190000e-70 276


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G283300 chr2B 391142594 391144827 2233 True 4126.0 4126 100.0000 1 2234 1 chr2B.!!$R1 2233
1 TraesCS2B01G283300 chr2B 391225217 391226782 1565 False 2704.0 2704 97.8930 1 1561 1 chr2B.!!$F1 1560
2 TraesCS2B01G283300 chr6B 596601834 596603888 2054 False 1777.0 2769 98.7605 1 2234 2 chr6B.!!$F4 2233
3 TraesCS2B01G283300 chrUn 171006257 171008310 2053 True 1774.0 2763 98.7280 1 2234 2 chrUn.!!$R1 2233
4 TraesCS2B01G283300 chr7A 638507640 638509694 2054 False 1768.5 2752 98.6645 1 2234 2 chr7A.!!$F1 2233
5 TraesCS2B01G283300 chr7A 708243596 708245649 2053 True 1748.5 2723 98.2795 1 2234 2 chr7A.!!$R1 2233
6 TraesCS2B01G283300 chr5B 567278456 567280020 1564 True 2743.0 2743 98.3390 1 1561 1 chr5B.!!$R1 1560
7 TraesCS2B01G283300 chr1B 672539195 672541246 2051 True 1751.0 2717 98.4715 1 2234 2 chr1B.!!$R1 2233
8 TraesCS2B01G283300 chr7D 382088261 382089823 1562 True 2708.0 2708 97.9540 1 1561 1 chr7D.!!$R1 1560
9 TraesCS2B01G283300 chr7D 626711171 626712733 1562 False 2697.0 2697 97.8290 1 1561 1 chr7D.!!$F1 1560

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
197 198 0.613853 TCCGGGTCGATCAGAGGTTT 60.614 55.0 0.0 0.0 0.0 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1563 1574 0.178301 CCCTCCTCCTTTACGGCTTC 59.822 60.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
197 198 0.613853 TCCGGGTCGATCAGAGGTTT 60.614 55.000 0.00 0.00 0.00 3.27
243 244 5.140454 GCCTATGAAATGGATAACCCTTGT 58.860 41.667 0.00 0.00 35.38 3.16
450 455 8.528044 TTTGGATATTAAGGAAGCCGTATTTT 57.472 30.769 0.00 0.00 0.00 1.82
602 607 2.368548 CCGATGGGTCTACATTCATCCA 59.631 50.000 0.00 0.00 34.24 3.41
1164 1175 0.543277 CTCATACAGCTCCCAGCCAA 59.457 55.000 0.00 0.00 43.77 4.52
1172 1183 2.598394 TCCCAGCCAACAAGCAGC 60.598 61.111 0.00 0.00 34.23 5.25
1484 1495 2.143925 GACGTAACCAGCTCTGCTTTT 58.856 47.619 0.00 0.00 36.40 2.27
1556 1567 1.557099 TTCCTTCTAAGCGAGCCTCA 58.443 50.000 0.00 0.00 0.00 3.86
1561 1572 2.386661 TCTAAGCGAGCCTCAAAAGG 57.613 50.000 0.00 0.00 46.44 3.11
1562 1573 1.899814 TCTAAGCGAGCCTCAAAAGGA 59.100 47.619 0.00 0.00 46.67 3.36
1563 1574 2.093973 TCTAAGCGAGCCTCAAAAGGAG 60.094 50.000 0.00 0.00 46.67 3.69
1575 1586 3.408634 TCAAAAGGAGAAGCCGTAAAGG 58.591 45.455 0.00 0.00 43.43 3.11
1576 1587 3.071892 TCAAAAGGAGAAGCCGTAAAGGA 59.928 43.478 0.00 0.00 45.00 3.36
1577 1588 3.336138 AAAGGAGAAGCCGTAAAGGAG 57.664 47.619 0.00 0.00 45.00 3.69
1578 1589 1.196012 AGGAGAAGCCGTAAAGGAGG 58.804 55.000 0.00 0.00 45.00 4.30
1580 1591 1.137282 GGAGAAGCCGTAAAGGAGGAG 59.863 57.143 0.00 0.00 45.00 3.69
1581 1592 1.137282 GAGAAGCCGTAAAGGAGGAGG 59.863 57.143 0.00 0.00 45.00 4.30
1582 1593 0.178301 GAAGCCGTAAAGGAGGAGGG 59.822 60.000 0.00 0.00 45.00 4.30
1583 1594 0.546988 AAGCCGTAAAGGAGGAGGGT 60.547 55.000 0.00 0.00 45.00 4.34
1584 1595 0.546988 AGCCGTAAAGGAGGAGGGTT 60.547 55.000 0.00 0.00 45.00 4.11
1585 1596 0.392595 GCCGTAAAGGAGGAGGGTTG 60.393 60.000 0.00 0.00 45.00 3.77
1586 1597 0.981943 CCGTAAAGGAGGAGGGTTGT 59.018 55.000 0.00 0.00 45.00 3.32
1587 1598 1.338769 CCGTAAAGGAGGAGGGTTGTG 60.339 57.143 0.00 0.00 45.00 3.33
1588 1599 1.621814 CGTAAAGGAGGAGGGTTGTGA 59.378 52.381 0.00 0.00 0.00 3.58
1589 1600 2.236395 CGTAAAGGAGGAGGGTTGTGAT 59.764 50.000 0.00 0.00 0.00 3.06
1590 1601 3.449737 CGTAAAGGAGGAGGGTTGTGATA 59.550 47.826 0.00 0.00 0.00 2.15
1591 1602 4.441634 CGTAAAGGAGGAGGGTTGTGATAG 60.442 50.000 0.00 0.00 0.00 2.08
1592 1603 2.182516 AGGAGGAGGGTTGTGATAGG 57.817 55.000 0.00 0.00 0.00 2.57
1593 1604 0.470341 GGAGGAGGGTTGTGATAGGC 59.530 60.000 0.00 0.00 0.00 3.93
1594 1605 1.501582 GAGGAGGGTTGTGATAGGCT 58.498 55.000 0.00 0.00 0.00 4.58
1596 1607 1.561542 AGGAGGGTTGTGATAGGCTTG 59.438 52.381 0.00 0.00 0.00 4.01
1597 1608 1.408822 GGAGGGTTGTGATAGGCTTGG 60.409 57.143 0.00 0.00 0.00 3.61
1599 1610 1.376609 GGGTTGTGATAGGCTTGGCG 61.377 60.000 0.00 0.00 0.00 5.69
1601 1612 1.009829 GTTGTGATAGGCTTGGCGAG 58.990 55.000 0.00 0.00 0.00 5.03
1612 1623 4.458666 TGGCGAGCCAACGTAAAA 57.541 50.000 15.24 0.00 44.12 1.52
1613 1624 2.704108 TGGCGAGCCAACGTAAAAA 58.296 47.368 15.24 0.00 44.12 1.94
1614 1625 0.308376 TGGCGAGCCAACGTAAAAAC 59.692 50.000 15.24 0.00 44.12 2.43
1615 1626 0.589708 GGCGAGCCAACGTAAAAACT 59.410 50.000 9.58 0.00 35.81 2.66
1616 1627 1.399343 GGCGAGCCAACGTAAAAACTC 60.399 52.381 9.58 0.00 35.81 3.01
1617 1628 1.262151 GCGAGCCAACGTAAAAACTCA 59.738 47.619 0.00 0.00 35.59 3.41
1618 1629 2.661979 GCGAGCCAACGTAAAAACTCAG 60.662 50.000 0.00 0.00 35.59 3.35
1619 1630 2.661979 CGAGCCAACGTAAAAACTCAGC 60.662 50.000 0.00 0.00 0.00 4.26
1620 1631 1.607148 AGCCAACGTAAAAACTCAGCC 59.393 47.619 0.00 0.00 0.00 4.85
1621 1632 1.335496 GCCAACGTAAAAACTCAGCCA 59.665 47.619 0.00 0.00 0.00 4.75
1622 1633 2.857104 GCCAACGTAAAAACTCAGCCAC 60.857 50.000 0.00 0.00 0.00 5.01
1623 1634 2.616842 CCAACGTAAAAACTCAGCCACT 59.383 45.455 0.00 0.00 0.00 4.00
1624 1635 3.303791 CCAACGTAAAAACTCAGCCACTC 60.304 47.826 0.00 0.00 0.00 3.51
1625 1636 3.470645 ACGTAAAAACTCAGCCACTCT 57.529 42.857 0.00 0.00 0.00 3.24
1626 1637 3.805207 ACGTAAAAACTCAGCCACTCTT 58.195 40.909 0.00 0.00 0.00 2.85
1627 1638 4.952460 ACGTAAAAACTCAGCCACTCTTA 58.048 39.130 0.00 0.00 0.00 2.10
1628 1639 5.548406 ACGTAAAAACTCAGCCACTCTTAT 58.452 37.500 0.00 0.00 0.00 1.73
1629 1640 5.408604 ACGTAAAAACTCAGCCACTCTTATG 59.591 40.000 0.00 0.00 0.00 1.90
1630 1641 5.163854 CGTAAAAACTCAGCCACTCTTATGG 60.164 44.000 0.00 0.00 43.26 2.74
1631 1642 4.640771 AAAACTCAGCCACTCTTATGGA 57.359 40.909 0.00 0.00 43.02 3.41
1632 1643 3.902881 AACTCAGCCACTCTTATGGAG 57.097 47.619 0.00 0.00 43.02 3.86
1633 1644 3.107402 ACTCAGCCACTCTTATGGAGA 57.893 47.619 0.00 0.00 44.45 3.71
1634 1645 3.652055 ACTCAGCCACTCTTATGGAGAT 58.348 45.455 0.00 0.00 44.45 2.75
1635 1646 3.387374 ACTCAGCCACTCTTATGGAGATG 59.613 47.826 0.00 0.00 44.45 2.90
1636 1647 3.640498 CTCAGCCACTCTTATGGAGATGA 59.360 47.826 0.00 0.00 44.45 2.92
1637 1648 4.033009 TCAGCCACTCTTATGGAGATGAA 58.967 43.478 0.00 0.00 44.45 2.57
1638 1649 4.471025 TCAGCCACTCTTATGGAGATGAAA 59.529 41.667 0.00 0.00 44.45 2.69
1639 1650 4.574013 CAGCCACTCTTATGGAGATGAAAC 59.426 45.833 0.00 0.00 44.45 2.78
1640 1651 3.879892 GCCACTCTTATGGAGATGAAACC 59.120 47.826 0.00 0.00 44.45 3.27
1641 1652 4.455606 CCACTCTTATGGAGATGAAACCC 58.544 47.826 4.83 0.00 44.45 4.11
1642 1653 4.080356 CCACTCTTATGGAGATGAAACCCA 60.080 45.833 4.83 0.00 44.45 4.51
1643 1654 5.500234 CACTCTTATGGAGATGAAACCCAA 58.500 41.667 4.83 0.00 44.45 4.12
1644 1655 5.945784 CACTCTTATGGAGATGAAACCCAAA 59.054 40.000 4.83 0.00 44.45 3.28
1645 1656 6.434028 CACTCTTATGGAGATGAAACCCAAAA 59.566 38.462 4.83 0.00 44.45 2.44
1646 1657 6.660949 ACTCTTATGGAGATGAAACCCAAAAG 59.339 38.462 4.83 0.00 44.45 2.27
1647 1658 6.789268 TCTTATGGAGATGAAACCCAAAAGA 58.211 36.000 0.00 0.00 33.15 2.52
1648 1659 7.237982 TCTTATGGAGATGAAACCCAAAAGAA 58.762 34.615 0.00 0.00 33.15 2.52
1649 1660 7.895429 TCTTATGGAGATGAAACCCAAAAGAAT 59.105 33.333 0.00 0.00 33.15 2.40
1650 1661 5.982890 TGGAGATGAAACCCAAAAGAATC 57.017 39.130 0.00 0.00 0.00 2.52
1651 1662 4.458989 TGGAGATGAAACCCAAAAGAATCG 59.541 41.667 0.00 0.00 0.00 3.34
1652 1663 4.700213 GGAGATGAAACCCAAAAGAATCGA 59.300 41.667 0.00 0.00 0.00 3.59
1653 1664 5.392057 GGAGATGAAACCCAAAAGAATCGAC 60.392 44.000 0.00 0.00 0.00 4.20
1654 1665 5.070001 AGATGAAACCCAAAAGAATCGACA 58.930 37.500 0.00 0.00 0.00 4.35
1655 1666 5.534654 AGATGAAACCCAAAAGAATCGACAA 59.465 36.000 0.00 0.00 0.00 3.18
1656 1667 5.584253 TGAAACCCAAAAGAATCGACAAA 57.416 34.783 0.00 0.00 0.00 2.83
1657 1668 5.967088 TGAAACCCAAAAGAATCGACAAAA 58.033 33.333 0.00 0.00 0.00 2.44
1658 1669 6.398918 TGAAACCCAAAAGAATCGACAAAAA 58.601 32.000 0.00 0.00 0.00 1.94
1659 1670 6.533367 TGAAACCCAAAAGAATCGACAAAAAG 59.467 34.615 0.00 0.00 0.00 2.27
1660 1671 4.368315 ACCCAAAAGAATCGACAAAAAGC 58.632 39.130 0.00 0.00 0.00 3.51
1661 1672 4.099419 ACCCAAAAGAATCGACAAAAAGCT 59.901 37.500 0.00 0.00 0.00 3.74
1662 1673 5.300792 ACCCAAAAGAATCGACAAAAAGCTA 59.699 36.000 0.00 0.00 0.00 3.32
1663 1674 5.858581 CCCAAAAGAATCGACAAAAAGCTAG 59.141 40.000 0.00 0.00 0.00 3.42
1664 1675 5.343325 CCAAAAGAATCGACAAAAAGCTAGC 59.657 40.000 6.62 6.62 0.00 3.42
1665 1676 5.948992 AAAGAATCGACAAAAAGCTAGCT 57.051 34.783 12.68 12.68 0.00 3.32
1666 1677 7.298122 CAAAAGAATCGACAAAAAGCTAGCTA 58.702 34.615 19.70 0.00 0.00 3.32
1667 1678 7.617041 AAAGAATCGACAAAAAGCTAGCTAT 57.383 32.000 19.70 7.46 0.00 2.97
1668 1679 6.595772 AGAATCGACAAAAAGCTAGCTATG 57.404 37.500 19.70 18.90 0.00 2.23
1669 1680 5.525378 AGAATCGACAAAAAGCTAGCTATGG 59.475 40.000 19.70 10.43 0.00 2.74
1670 1681 4.465632 TCGACAAAAAGCTAGCTATGGA 57.534 40.909 19.70 8.48 0.00 3.41
1671 1682 4.181578 TCGACAAAAAGCTAGCTATGGAC 58.818 43.478 19.70 13.83 0.00 4.02
1672 1683 3.932710 CGACAAAAAGCTAGCTATGGACA 59.067 43.478 19.70 0.00 0.00 4.02
1673 1684 4.033358 CGACAAAAAGCTAGCTATGGACAG 59.967 45.833 19.70 7.22 0.00 3.51
1674 1685 4.265073 ACAAAAAGCTAGCTATGGACAGG 58.735 43.478 19.70 5.24 0.00 4.00
1675 1686 3.567478 AAAAGCTAGCTATGGACAGGG 57.433 47.619 19.70 0.00 0.00 4.45
1676 1687 1.428869 AAGCTAGCTATGGACAGGGG 58.571 55.000 19.70 0.00 0.00 4.79
1677 1688 0.266152 AGCTAGCTATGGACAGGGGT 59.734 55.000 17.69 0.00 0.00 4.95
1678 1689 0.394565 GCTAGCTATGGACAGGGGTG 59.605 60.000 7.70 0.00 0.00 4.61
1679 1690 0.394565 CTAGCTATGGACAGGGGTGC 59.605 60.000 0.00 0.00 35.66 5.01
1680 1691 1.399744 TAGCTATGGACAGGGGTGCG 61.400 60.000 0.00 0.00 38.35 5.34
1681 1692 3.031417 GCTATGGACAGGGGTGCGT 62.031 63.158 0.00 0.00 38.35 5.24
1682 1693 1.153369 CTATGGACAGGGGTGCGTG 60.153 63.158 0.00 0.00 38.35 5.34
1683 1694 2.593468 CTATGGACAGGGGTGCGTGG 62.593 65.000 0.00 0.00 38.35 4.94
1685 1696 3.948719 GGACAGGGGTGCGTGGAA 61.949 66.667 0.00 0.00 0.00 3.53
1686 1697 2.358737 GACAGGGGTGCGTGGAAG 60.359 66.667 0.00 0.00 0.00 3.46
1687 1698 4.643387 ACAGGGGTGCGTGGAAGC 62.643 66.667 0.00 0.00 37.71 3.86
1688 1699 4.335647 CAGGGGTGCGTGGAAGCT 62.336 66.667 0.00 0.00 38.13 3.74
1689 1700 3.570212 AGGGGTGCGTGGAAGCTT 61.570 61.111 0.00 0.00 38.13 3.74
1690 1701 3.365265 GGGGTGCGTGGAAGCTTG 61.365 66.667 2.10 0.00 38.13 4.01
1691 1702 4.043200 GGGTGCGTGGAAGCTTGC 62.043 66.667 11.58 11.58 38.13 4.01
1692 1703 2.980233 GGTGCGTGGAAGCTTGCT 60.980 61.111 19.34 0.00 38.13 3.91
1693 1704 1.671054 GGTGCGTGGAAGCTTGCTA 60.671 57.895 19.34 2.82 38.13 3.49
1694 1705 1.026718 GGTGCGTGGAAGCTTGCTAT 61.027 55.000 19.34 0.00 38.13 2.97
1695 1706 0.375106 GTGCGTGGAAGCTTGCTATC 59.625 55.000 19.34 8.59 38.13 2.08
1696 1707 0.744414 TGCGTGGAAGCTTGCTATCC 60.744 55.000 19.34 6.99 38.13 2.59
1697 1708 0.744414 GCGTGGAAGCTTGCTATCCA 60.744 55.000 19.34 9.80 40.84 3.41
1698 1709 1.959042 CGTGGAAGCTTGCTATCCAT 58.041 50.000 19.34 0.00 44.55 3.41
1699 1710 1.600957 CGTGGAAGCTTGCTATCCATG 59.399 52.381 19.34 20.51 44.55 3.66
1700 1711 2.648059 GTGGAAGCTTGCTATCCATGT 58.352 47.619 19.34 0.00 44.55 3.21
1701 1712 2.357009 GTGGAAGCTTGCTATCCATGTG 59.643 50.000 19.34 0.00 44.55 3.21
1702 1713 1.336125 GGAAGCTTGCTATCCATGTGC 59.664 52.381 11.19 0.00 33.30 4.57
1703 1714 1.336125 GAAGCTTGCTATCCATGTGCC 59.664 52.381 2.10 0.00 0.00 5.01
1704 1715 0.256752 AGCTTGCTATCCATGTGCCA 59.743 50.000 0.00 0.00 0.00 4.92
1705 1716 0.666913 GCTTGCTATCCATGTGCCAG 59.333 55.000 0.00 0.00 0.00 4.85
1706 1717 1.748244 GCTTGCTATCCATGTGCCAGA 60.748 52.381 0.00 0.00 0.00 3.86
1707 1718 2.219458 CTTGCTATCCATGTGCCAGAG 58.781 52.381 0.00 0.00 0.00 3.35
1708 1719 0.179037 TGCTATCCATGTGCCAGAGC 60.179 55.000 0.00 0.00 40.48 4.09
1709 1720 0.888285 GCTATCCATGTGCCAGAGCC 60.888 60.000 0.00 0.00 38.69 4.70
1710 1721 0.471191 CTATCCATGTGCCAGAGCCA 59.529 55.000 0.00 0.00 38.69 4.75
1711 1722 1.073444 CTATCCATGTGCCAGAGCCAT 59.927 52.381 0.00 0.00 38.69 4.40
1712 1723 0.467474 ATCCATGTGCCAGAGCCATG 60.467 55.000 8.59 8.59 42.54 3.66
1713 1724 1.077285 CCATGTGCCAGAGCCATGA 60.077 57.895 14.22 0.00 44.14 3.07
1714 1725 1.101635 CCATGTGCCAGAGCCATGAG 61.102 60.000 14.22 5.17 44.14 2.90
1715 1726 0.393944 CATGTGCCAGAGCCATGAGT 60.394 55.000 0.00 0.00 44.14 3.41
1716 1727 0.330604 ATGTGCCAGAGCCATGAGTT 59.669 50.000 0.00 0.00 38.69 3.01
1717 1728 0.607217 TGTGCCAGAGCCATGAGTTG 60.607 55.000 0.00 0.00 38.69 3.16
1726 1737 3.231734 CCATGAGTTGGTTGCGAGA 57.768 52.632 0.00 0.00 40.99 4.04
1727 1738 1.742761 CCATGAGTTGGTTGCGAGAT 58.257 50.000 0.00 0.00 40.99 2.75
1728 1739 1.667724 CCATGAGTTGGTTGCGAGATC 59.332 52.381 0.00 0.00 40.99 2.75
1729 1740 2.625737 CATGAGTTGGTTGCGAGATCT 58.374 47.619 0.00 0.00 0.00 2.75
1730 1741 2.839486 TGAGTTGGTTGCGAGATCTT 57.161 45.000 0.00 0.00 0.00 2.40
1731 1742 3.953712 TGAGTTGGTTGCGAGATCTTA 57.046 42.857 0.00 0.00 0.00 2.10
1732 1743 4.471904 TGAGTTGGTTGCGAGATCTTAT 57.528 40.909 0.00 0.00 0.00 1.73
1733 1744 4.183865 TGAGTTGGTTGCGAGATCTTATG 58.816 43.478 0.00 0.00 0.00 1.90
1734 1745 3.535561 AGTTGGTTGCGAGATCTTATGG 58.464 45.455 0.00 0.00 0.00 2.74
1735 1746 2.614057 GTTGGTTGCGAGATCTTATGGG 59.386 50.000 0.00 0.00 0.00 4.00
1736 1747 1.837439 TGGTTGCGAGATCTTATGGGT 59.163 47.619 0.00 0.00 0.00 4.51
1737 1748 2.238646 TGGTTGCGAGATCTTATGGGTT 59.761 45.455 0.00 0.00 0.00 4.11
1738 1749 3.279434 GGTTGCGAGATCTTATGGGTTT 58.721 45.455 0.00 0.00 0.00 3.27
1739 1750 3.312697 GGTTGCGAGATCTTATGGGTTTC 59.687 47.826 0.00 0.00 0.00 2.78
1740 1751 3.904800 TGCGAGATCTTATGGGTTTCA 57.095 42.857 0.00 0.00 0.00 2.69
1741 1752 3.531538 TGCGAGATCTTATGGGTTTCAC 58.468 45.455 0.00 0.00 0.00 3.18
1742 1753 2.872858 GCGAGATCTTATGGGTTTCACC 59.127 50.000 0.00 0.00 37.60 4.02
1743 1754 3.432326 GCGAGATCTTATGGGTTTCACCT 60.432 47.826 0.00 0.00 38.64 4.00
1744 1755 4.372656 CGAGATCTTATGGGTTTCACCTC 58.627 47.826 0.00 0.00 38.64 3.85
1745 1756 4.100189 CGAGATCTTATGGGTTTCACCTCT 59.900 45.833 0.00 0.00 38.64 3.69
1746 1757 5.302059 CGAGATCTTATGGGTTTCACCTCTA 59.698 44.000 0.00 0.00 38.64 2.43
1747 1758 6.515862 CGAGATCTTATGGGTTTCACCTCTAG 60.516 46.154 0.00 0.00 38.64 2.43
1748 1759 4.755266 TCTTATGGGTTTCACCTCTAGC 57.245 45.455 0.00 0.00 38.64 3.42
1749 1760 3.454812 TCTTATGGGTTTCACCTCTAGCC 59.545 47.826 0.00 0.00 38.64 3.93
1750 1761 1.972588 ATGGGTTTCACCTCTAGCCT 58.027 50.000 0.00 0.00 38.64 4.58
1751 1762 2.634639 TGGGTTTCACCTCTAGCCTA 57.365 50.000 0.00 0.00 38.64 3.93
1752 1763 2.185387 TGGGTTTCACCTCTAGCCTAC 58.815 52.381 0.00 0.00 38.64 3.18
1753 1764 1.485480 GGGTTTCACCTCTAGCCTACC 59.515 57.143 0.00 0.00 38.64 3.18
1754 1765 1.485480 GGTTTCACCTCTAGCCTACCC 59.515 57.143 0.00 0.00 34.73 3.69
1755 1766 1.485480 GTTTCACCTCTAGCCTACCCC 59.515 57.143 0.00 0.00 0.00 4.95
1756 1767 0.714180 TTCACCTCTAGCCTACCCCA 59.286 55.000 0.00 0.00 0.00 4.96
1757 1768 0.714180 TCACCTCTAGCCTACCCCAA 59.286 55.000 0.00 0.00 0.00 4.12
1758 1769 0.831307 CACCTCTAGCCTACCCCAAC 59.169 60.000 0.00 0.00 0.00 3.77
1759 1770 0.717196 ACCTCTAGCCTACCCCAACT 59.283 55.000 0.00 0.00 0.00 3.16
1760 1771 1.080666 ACCTCTAGCCTACCCCAACTT 59.919 52.381 0.00 0.00 0.00 2.66
1761 1772 1.486726 CCTCTAGCCTACCCCAACTTG 59.513 57.143 0.00 0.00 0.00 3.16
1762 1773 0.909623 TCTAGCCTACCCCAACTTGC 59.090 55.000 0.00 0.00 0.00 4.01
1763 1774 0.912486 CTAGCCTACCCCAACTTGCT 59.088 55.000 0.00 0.00 0.00 3.91
1764 1775 1.282157 CTAGCCTACCCCAACTTGCTT 59.718 52.381 0.00 0.00 0.00 3.91
1765 1776 0.251341 AGCCTACCCCAACTTGCTTG 60.251 55.000 0.00 0.00 0.00 4.01
1774 1785 3.923017 CCAACTTGCTTGGGACTAAAG 57.077 47.619 0.00 0.00 45.46 1.85
1775 1786 2.558359 CCAACTTGCTTGGGACTAAAGG 59.442 50.000 0.00 0.00 45.46 3.11
1776 1787 1.911057 ACTTGCTTGGGACTAAAGGC 58.089 50.000 0.00 0.00 0.00 4.35
1777 1788 1.425448 ACTTGCTTGGGACTAAAGGCT 59.575 47.619 0.00 0.00 0.00 4.58
1778 1789 2.158460 ACTTGCTTGGGACTAAAGGCTT 60.158 45.455 0.00 0.00 0.00 4.35
1779 1790 2.675658 TGCTTGGGACTAAAGGCTTT 57.324 45.000 17.76 17.76 0.00 3.51
1780 1791 2.238521 TGCTTGGGACTAAAGGCTTTG 58.761 47.619 22.32 13.97 0.00 2.77
1781 1792 2.239400 GCTTGGGACTAAAGGCTTTGT 58.761 47.619 22.32 16.86 0.00 2.83
1782 1793 2.628178 GCTTGGGACTAAAGGCTTTGTT 59.372 45.455 22.32 8.73 0.00 2.83
1783 1794 3.552890 GCTTGGGACTAAAGGCTTTGTTG 60.553 47.826 22.32 13.85 0.00 3.33
1784 1795 3.306472 TGGGACTAAAGGCTTTGTTGT 57.694 42.857 22.32 16.69 0.00 3.32
1785 1796 3.637769 TGGGACTAAAGGCTTTGTTGTT 58.362 40.909 22.32 1.84 0.00 2.83
1786 1797 3.383185 TGGGACTAAAGGCTTTGTTGTTG 59.617 43.478 22.32 7.79 0.00 3.33
1787 1798 3.383505 GGGACTAAAGGCTTTGTTGTTGT 59.616 43.478 22.32 10.58 0.00 3.32
1788 1799 4.142026 GGGACTAAAGGCTTTGTTGTTGTT 60.142 41.667 22.32 0.00 0.00 2.83
1789 1800 4.803613 GGACTAAAGGCTTTGTTGTTGTTG 59.196 41.667 22.32 0.00 0.00 3.33
1790 1801 5.400066 ACTAAAGGCTTTGTTGTTGTTGT 57.600 34.783 22.32 0.00 0.00 3.32
1791 1802 5.789521 ACTAAAGGCTTTGTTGTTGTTGTT 58.210 33.333 22.32 0.00 0.00 2.83
1792 1803 5.637387 ACTAAAGGCTTTGTTGTTGTTGTTG 59.363 36.000 22.32 0.00 0.00 3.33
1793 1804 3.676291 AGGCTTTGTTGTTGTTGTTGT 57.324 38.095 0.00 0.00 0.00 3.32
1799 1810 6.128418 GGCTTTGTTGTTGTTGTTGTACAAAT 60.128 34.615 10.51 0.00 40.15 2.32
2060 2071 6.071616 GCTAGAGGTAATTTCGATGATCTCCT 60.072 42.308 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
197 198 2.858476 TGGGGGAGAAGCAAGCCA 60.858 61.111 0.00 0.00 0.00 4.75
602 607 4.405680 TGAAGAGTACCCGATGACATTCAT 59.594 41.667 0.00 0.00 40.34 2.57
1172 1183 5.596361 TCCATGACTTCTAGAGGAAAGCTAG 59.404 44.000 9.14 0.00 37.32 3.42
1507 1518 0.455410 AAAGCAACTGCAAGCGTTCA 59.545 45.000 4.22 0.00 45.16 3.18
1556 1567 3.559384 CCTCCTTTACGGCTTCTCCTTTT 60.559 47.826 0.00 0.00 0.00 2.27
1561 1572 1.137282 CCTCCTCCTTTACGGCTTCTC 59.863 57.143 0.00 0.00 0.00 2.87
1562 1573 1.196012 CCTCCTCCTTTACGGCTTCT 58.804 55.000 0.00 0.00 0.00 2.85
1563 1574 0.178301 CCCTCCTCCTTTACGGCTTC 59.822 60.000 0.00 0.00 0.00 3.86
1564 1575 0.546988 ACCCTCCTCCTTTACGGCTT 60.547 55.000 0.00 0.00 0.00 4.35
1565 1576 0.546988 AACCCTCCTCCTTTACGGCT 60.547 55.000 0.00 0.00 0.00 5.52
1566 1577 0.392595 CAACCCTCCTCCTTTACGGC 60.393 60.000 0.00 0.00 0.00 5.68
1568 1579 1.621814 TCACAACCCTCCTCCTTTACG 59.378 52.381 0.00 0.00 0.00 3.18
1569 1580 4.141688 CCTATCACAACCCTCCTCCTTTAC 60.142 50.000 0.00 0.00 0.00 2.01
1570 1581 4.037927 CCTATCACAACCCTCCTCCTTTA 58.962 47.826 0.00 0.00 0.00 1.85
1571 1582 2.846827 CCTATCACAACCCTCCTCCTTT 59.153 50.000 0.00 0.00 0.00 3.11
1573 1584 1.972207 GCCTATCACAACCCTCCTCCT 60.972 57.143 0.00 0.00 0.00 3.69
1574 1585 0.470341 GCCTATCACAACCCTCCTCC 59.530 60.000 0.00 0.00 0.00 4.30
1575 1586 1.501582 AGCCTATCACAACCCTCCTC 58.498 55.000 0.00 0.00 0.00 3.71
1576 1587 1.561542 CAAGCCTATCACAACCCTCCT 59.438 52.381 0.00 0.00 0.00 3.69
1577 1588 1.408822 CCAAGCCTATCACAACCCTCC 60.409 57.143 0.00 0.00 0.00 4.30
1578 1589 2.019156 GCCAAGCCTATCACAACCCTC 61.019 57.143 0.00 0.00 0.00 4.30
1580 1591 1.376609 CGCCAAGCCTATCACAACCC 61.377 60.000 0.00 0.00 0.00 4.11
1581 1592 0.392461 TCGCCAAGCCTATCACAACC 60.392 55.000 0.00 0.00 0.00 3.77
1582 1593 1.009829 CTCGCCAAGCCTATCACAAC 58.990 55.000 0.00 0.00 0.00 3.32
1583 1594 0.744414 GCTCGCCAAGCCTATCACAA 60.744 55.000 0.00 0.00 45.92 3.33
1584 1595 1.153369 GCTCGCCAAGCCTATCACA 60.153 57.895 0.00 0.00 45.92 3.58
1585 1596 3.724494 GCTCGCCAAGCCTATCAC 58.276 61.111 0.00 0.00 45.92 3.06
1596 1607 0.589708 AGTTTTTACGTTGGCTCGCC 59.410 50.000 0.00 0.00 0.00 5.54
1597 1608 1.262151 TGAGTTTTTACGTTGGCTCGC 59.738 47.619 0.00 0.00 0.00 5.03
1599 1610 2.350484 GGCTGAGTTTTTACGTTGGCTC 60.350 50.000 0.00 0.00 0.00 4.70
1601 1612 1.335496 TGGCTGAGTTTTTACGTTGGC 59.665 47.619 0.00 0.00 0.00 4.52
1602 1613 2.616842 AGTGGCTGAGTTTTTACGTTGG 59.383 45.455 0.00 0.00 0.00 3.77
1604 1615 3.805207 AGAGTGGCTGAGTTTTTACGTT 58.195 40.909 0.00 0.00 0.00 3.99
1605 1616 3.470645 AGAGTGGCTGAGTTTTTACGT 57.529 42.857 0.00 0.00 0.00 3.57
1607 1618 5.938125 TCCATAAGAGTGGCTGAGTTTTTAC 59.062 40.000 0.00 0.00 39.19 2.01
1608 1619 6.013725 TCTCCATAAGAGTGGCTGAGTTTTTA 60.014 38.462 0.00 0.00 43.71 1.52
1611 1622 3.840666 TCTCCATAAGAGTGGCTGAGTTT 59.159 43.478 0.00 0.00 43.71 2.66
1612 1623 3.445008 TCTCCATAAGAGTGGCTGAGTT 58.555 45.455 0.00 0.00 43.71 3.01
1613 1624 3.107402 TCTCCATAAGAGTGGCTGAGT 57.893 47.619 0.00 0.00 43.71 3.41
1614 1625 3.640498 TCATCTCCATAAGAGTGGCTGAG 59.360 47.826 0.00 0.00 43.71 3.35
1615 1626 3.646534 TCATCTCCATAAGAGTGGCTGA 58.353 45.455 0.00 0.00 43.71 4.26
1616 1627 4.412796 TTCATCTCCATAAGAGTGGCTG 57.587 45.455 0.00 0.00 43.71 4.85
1617 1628 4.384647 GGTTTCATCTCCATAAGAGTGGCT 60.385 45.833 0.00 0.00 43.71 4.75
1618 1629 3.879892 GGTTTCATCTCCATAAGAGTGGC 59.120 47.826 0.00 0.00 43.71 5.01
1619 1630 4.080356 TGGGTTTCATCTCCATAAGAGTGG 60.080 45.833 0.00 0.00 43.71 4.00
1620 1631 5.102953 TGGGTTTCATCTCCATAAGAGTG 57.897 43.478 0.00 0.00 43.71 3.51
1621 1632 5.779241 TTGGGTTTCATCTCCATAAGAGT 57.221 39.130 0.00 0.00 43.71 3.24
1622 1633 6.886459 TCTTTTGGGTTTCATCTCCATAAGAG 59.114 38.462 9.33 0.00 40.80 2.85
1623 1634 6.789268 TCTTTTGGGTTTCATCTCCATAAGA 58.211 36.000 9.33 9.33 42.22 2.10
1624 1635 7.466746 TTCTTTTGGGTTTCATCTCCATAAG 57.533 36.000 0.00 0.00 39.39 1.73
1625 1636 7.148086 CGATTCTTTTGGGTTTCATCTCCATAA 60.148 37.037 0.00 0.00 0.00 1.90
1626 1637 6.318648 CGATTCTTTTGGGTTTCATCTCCATA 59.681 38.462 0.00 0.00 0.00 2.74
1627 1638 5.126061 CGATTCTTTTGGGTTTCATCTCCAT 59.874 40.000 0.00 0.00 0.00 3.41
1628 1639 4.458989 CGATTCTTTTGGGTTTCATCTCCA 59.541 41.667 0.00 0.00 0.00 3.86
1629 1640 4.700213 TCGATTCTTTTGGGTTTCATCTCC 59.300 41.667 0.00 0.00 0.00 3.71
1630 1641 5.181245 TGTCGATTCTTTTGGGTTTCATCTC 59.819 40.000 0.00 0.00 0.00 2.75
1631 1642 5.070001 TGTCGATTCTTTTGGGTTTCATCT 58.930 37.500 0.00 0.00 0.00 2.90
1632 1643 5.371115 TGTCGATTCTTTTGGGTTTCATC 57.629 39.130 0.00 0.00 0.00 2.92
1633 1644 5.782893 TTGTCGATTCTTTTGGGTTTCAT 57.217 34.783 0.00 0.00 0.00 2.57
1634 1645 5.584253 TTTGTCGATTCTTTTGGGTTTCA 57.416 34.783 0.00 0.00 0.00 2.69
1635 1646 6.509517 GCTTTTTGTCGATTCTTTTGGGTTTC 60.510 38.462 0.00 0.00 0.00 2.78
1636 1647 5.293324 GCTTTTTGTCGATTCTTTTGGGTTT 59.707 36.000 0.00 0.00 0.00 3.27
1637 1648 4.808895 GCTTTTTGTCGATTCTTTTGGGTT 59.191 37.500 0.00 0.00 0.00 4.11
1638 1649 4.099419 AGCTTTTTGTCGATTCTTTTGGGT 59.901 37.500 0.00 0.00 0.00 4.51
1639 1650 4.620982 AGCTTTTTGTCGATTCTTTTGGG 58.379 39.130 0.00 0.00 0.00 4.12
1640 1651 5.343325 GCTAGCTTTTTGTCGATTCTTTTGG 59.657 40.000 7.70 0.00 0.00 3.28
1641 1652 6.145535 AGCTAGCTTTTTGTCGATTCTTTTG 58.854 36.000 12.68 0.00 0.00 2.44
1642 1653 6.319141 AGCTAGCTTTTTGTCGATTCTTTT 57.681 33.333 12.68 0.00 0.00 2.27
1643 1654 5.948992 AGCTAGCTTTTTGTCGATTCTTT 57.051 34.783 12.68 0.00 0.00 2.52
1644 1655 6.037610 CCATAGCTAGCTTTTTGTCGATTCTT 59.962 38.462 24.88 0.00 0.00 2.52
1645 1656 5.525378 CCATAGCTAGCTTTTTGTCGATTCT 59.475 40.000 24.88 0.00 0.00 2.40
1646 1657 5.523916 TCCATAGCTAGCTTTTTGTCGATTC 59.476 40.000 24.88 0.00 0.00 2.52
1647 1658 5.294552 GTCCATAGCTAGCTTTTTGTCGATT 59.705 40.000 24.88 0.00 0.00 3.34
1648 1659 4.811557 GTCCATAGCTAGCTTTTTGTCGAT 59.188 41.667 24.88 4.37 0.00 3.59
1649 1660 4.181578 GTCCATAGCTAGCTTTTTGTCGA 58.818 43.478 24.88 1.60 0.00 4.20
1650 1661 3.932710 TGTCCATAGCTAGCTTTTTGTCG 59.067 43.478 24.88 2.47 0.00 4.35
1651 1662 4.333926 CCTGTCCATAGCTAGCTTTTTGTC 59.666 45.833 24.88 13.00 0.00 3.18
1652 1663 4.265073 CCTGTCCATAGCTAGCTTTTTGT 58.735 43.478 24.88 0.00 0.00 2.83
1653 1664 3.629398 CCCTGTCCATAGCTAGCTTTTTG 59.371 47.826 24.88 17.31 0.00 2.44
1654 1665 3.372025 CCCCTGTCCATAGCTAGCTTTTT 60.372 47.826 24.88 5.58 0.00 1.94
1655 1666 2.173569 CCCCTGTCCATAGCTAGCTTTT 59.826 50.000 24.88 8.40 0.00 2.27
1656 1667 1.771255 CCCCTGTCCATAGCTAGCTTT 59.229 52.381 24.88 12.92 0.00 3.51
1657 1668 1.344496 ACCCCTGTCCATAGCTAGCTT 60.344 52.381 24.88 8.10 0.00 3.74
1658 1669 0.266152 ACCCCTGTCCATAGCTAGCT 59.734 55.000 23.12 23.12 0.00 3.32
1659 1670 0.394565 CACCCCTGTCCATAGCTAGC 59.605 60.000 6.62 6.62 0.00 3.42
1660 1671 0.394565 GCACCCCTGTCCATAGCTAG 59.605 60.000 0.00 0.00 0.00 3.42
1661 1672 1.399744 CGCACCCCTGTCCATAGCTA 61.400 60.000 0.00 0.00 0.00 3.32
1662 1673 2.735772 CGCACCCCTGTCCATAGCT 61.736 63.158 0.00 0.00 0.00 3.32
1663 1674 2.203070 CGCACCCCTGTCCATAGC 60.203 66.667 0.00 0.00 0.00 2.97
1664 1675 1.153369 CACGCACCCCTGTCCATAG 60.153 63.158 0.00 0.00 0.00 2.23
1665 1676 2.665089 CCACGCACCCCTGTCCATA 61.665 63.158 0.00 0.00 0.00 2.74
1666 1677 4.033776 CCACGCACCCCTGTCCAT 62.034 66.667 0.00 0.00 0.00 3.41
1668 1679 3.901797 CTTCCACGCACCCCTGTCC 62.902 68.421 0.00 0.00 0.00 4.02
1669 1680 2.358737 CTTCCACGCACCCCTGTC 60.359 66.667 0.00 0.00 0.00 3.51
1670 1681 4.643387 GCTTCCACGCACCCCTGT 62.643 66.667 0.00 0.00 0.00 4.00
1671 1682 3.850098 AAGCTTCCACGCACCCCTG 62.850 63.158 0.00 0.00 0.00 4.45
1672 1683 3.570212 AAGCTTCCACGCACCCCT 61.570 61.111 0.00 0.00 0.00 4.79
1673 1684 3.365265 CAAGCTTCCACGCACCCC 61.365 66.667 0.00 0.00 0.00 4.95
1674 1685 4.043200 GCAAGCTTCCACGCACCC 62.043 66.667 0.00 0.00 0.00 4.61
1675 1686 1.026718 ATAGCAAGCTTCCACGCACC 61.027 55.000 8.96 0.00 0.00 5.01
1676 1687 0.375106 GATAGCAAGCTTCCACGCAC 59.625 55.000 8.96 0.00 0.00 5.34
1677 1688 0.744414 GGATAGCAAGCTTCCACGCA 60.744 55.000 8.96 0.00 0.00 5.24
1678 1689 0.744414 TGGATAGCAAGCTTCCACGC 60.744 55.000 16.61 0.00 34.65 5.34
1679 1690 1.600957 CATGGATAGCAAGCTTCCACG 59.399 52.381 20.41 13.24 42.09 4.94
1680 1691 2.357009 CACATGGATAGCAAGCTTCCAC 59.643 50.000 20.41 0.00 42.09 4.02
1681 1692 2.646930 CACATGGATAGCAAGCTTCCA 58.353 47.619 20.33 20.33 43.37 3.53
1682 1693 1.336125 GCACATGGATAGCAAGCTTCC 59.664 52.381 0.00 7.95 0.00 3.46
1683 1694 1.336125 GGCACATGGATAGCAAGCTTC 59.664 52.381 0.00 0.00 0.00 3.86
1684 1695 1.341285 TGGCACATGGATAGCAAGCTT 60.341 47.619 0.00 0.00 0.00 3.74
1685 1696 0.256752 TGGCACATGGATAGCAAGCT 59.743 50.000 0.00 0.00 0.00 3.74
1686 1697 0.666913 CTGGCACATGGATAGCAAGC 59.333 55.000 0.00 0.00 38.20 4.01
1687 1698 2.219458 CTCTGGCACATGGATAGCAAG 58.781 52.381 0.00 0.00 38.20 4.01
1688 1699 1.748244 GCTCTGGCACATGGATAGCAA 60.748 52.381 0.00 0.00 38.20 3.91
1689 1700 0.179037 GCTCTGGCACATGGATAGCA 60.179 55.000 0.00 0.00 38.20 3.49
1690 1701 0.888285 GGCTCTGGCACATGGATAGC 60.888 60.000 0.00 0.00 38.20 2.97
1691 1702 0.471191 TGGCTCTGGCACATGGATAG 59.529 55.000 0.00 0.00 38.20 2.08
1692 1703 1.142936 ATGGCTCTGGCACATGGATA 58.857 50.000 0.00 0.00 41.84 2.59
1693 1704 0.467474 CATGGCTCTGGCACATGGAT 60.467 55.000 7.68 0.00 41.84 3.41
1694 1705 1.077285 CATGGCTCTGGCACATGGA 60.077 57.895 7.68 0.00 41.84 3.41
1695 1706 1.077285 TCATGGCTCTGGCACATGG 60.077 57.895 13.76 0.00 41.84 3.66
1696 1707 0.393944 ACTCATGGCTCTGGCACATG 60.394 55.000 8.97 8.97 41.84 3.21
1697 1708 0.330604 AACTCATGGCTCTGGCACAT 59.669 50.000 0.00 0.00 41.84 3.21
1698 1709 0.607217 CAACTCATGGCTCTGGCACA 60.607 55.000 0.00 0.00 41.84 4.57
1699 1710 1.310933 CCAACTCATGGCTCTGGCAC 61.311 60.000 0.00 0.00 43.80 5.01
1700 1711 1.001764 CCAACTCATGGCTCTGGCA 60.002 57.895 0.00 0.00 43.80 4.92
1701 1712 3.915575 CCAACTCATGGCTCTGGC 58.084 61.111 0.00 0.00 43.80 4.85
1709 1720 2.625737 AGATCTCGCAACCAACTCATG 58.374 47.619 0.00 0.00 0.00 3.07
1710 1721 3.340814 AAGATCTCGCAACCAACTCAT 57.659 42.857 0.00 0.00 0.00 2.90
1711 1722 2.839486 AAGATCTCGCAACCAACTCA 57.161 45.000 0.00 0.00 0.00 3.41
1712 1723 3.557595 CCATAAGATCTCGCAACCAACTC 59.442 47.826 0.00 0.00 0.00 3.01
1713 1724 3.535561 CCATAAGATCTCGCAACCAACT 58.464 45.455 0.00 0.00 0.00 3.16
1714 1725 2.614057 CCCATAAGATCTCGCAACCAAC 59.386 50.000 0.00 0.00 0.00 3.77
1715 1726 2.238646 ACCCATAAGATCTCGCAACCAA 59.761 45.455 0.00 0.00 0.00 3.67
1716 1727 1.837439 ACCCATAAGATCTCGCAACCA 59.163 47.619 0.00 0.00 0.00 3.67
1717 1728 2.622064 ACCCATAAGATCTCGCAACC 57.378 50.000 0.00 0.00 0.00 3.77
1718 1729 3.938963 TGAAACCCATAAGATCTCGCAAC 59.061 43.478 0.00 0.00 0.00 4.17
1719 1730 3.938963 GTGAAACCCATAAGATCTCGCAA 59.061 43.478 0.00 0.00 0.00 4.85
1720 1731 3.531538 GTGAAACCCATAAGATCTCGCA 58.468 45.455 0.00 0.00 0.00 5.10
1735 1746 1.485480 GGGGTAGGCTAGAGGTGAAAC 59.515 57.143 0.00 0.00 0.00 2.78
1736 1747 1.079825 TGGGGTAGGCTAGAGGTGAAA 59.920 52.381 0.00 0.00 0.00 2.69
1737 1748 0.714180 TGGGGTAGGCTAGAGGTGAA 59.286 55.000 0.00 0.00 0.00 3.18
1738 1749 0.714180 TTGGGGTAGGCTAGAGGTGA 59.286 55.000 0.00 0.00 0.00 4.02
1739 1750 0.831307 GTTGGGGTAGGCTAGAGGTG 59.169 60.000 0.00 0.00 0.00 4.00
1740 1751 0.717196 AGTTGGGGTAGGCTAGAGGT 59.283 55.000 0.00 0.00 0.00 3.85
1741 1752 1.486726 CAAGTTGGGGTAGGCTAGAGG 59.513 57.143 0.00 0.00 0.00 3.69
1742 1753 1.134371 GCAAGTTGGGGTAGGCTAGAG 60.134 57.143 4.75 0.00 0.00 2.43
1743 1754 0.909623 GCAAGTTGGGGTAGGCTAGA 59.090 55.000 4.75 0.00 0.00 2.43
1744 1755 0.912486 AGCAAGTTGGGGTAGGCTAG 59.088 55.000 4.75 0.00 0.00 3.42
1745 1756 1.004277 CAAGCAAGTTGGGGTAGGCTA 59.996 52.381 4.75 0.00 31.82 3.93
1746 1757 0.251341 CAAGCAAGTTGGGGTAGGCT 60.251 55.000 4.75 0.00 31.82 4.58
1747 1758 2.267045 CAAGCAAGTTGGGGTAGGC 58.733 57.895 4.75 0.00 31.82 3.93
1755 1766 2.029918 GCCTTTAGTCCCAAGCAAGTTG 60.030 50.000 0.00 0.00 35.71 3.16
1756 1767 2.158460 AGCCTTTAGTCCCAAGCAAGTT 60.158 45.455 0.00 0.00 0.00 2.66
1757 1768 1.425448 AGCCTTTAGTCCCAAGCAAGT 59.575 47.619 0.00 0.00 0.00 3.16
1758 1769 2.206576 AGCCTTTAGTCCCAAGCAAG 57.793 50.000 0.00 0.00 0.00 4.01
1759 1770 2.627699 CAAAGCCTTTAGTCCCAAGCAA 59.372 45.455 0.00 0.00 0.00 3.91
1760 1771 2.238521 CAAAGCCTTTAGTCCCAAGCA 58.761 47.619 0.00 0.00 0.00 3.91
1761 1772 2.239400 ACAAAGCCTTTAGTCCCAAGC 58.761 47.619 0.00 0.00 0.00 4.01
1762 1773 3.636764 ACAACAAAGCCTTTAGTCCCAAG 59.363 43.478 0.00 0.00 0.00 3.61
1763 1774 3.637769 ACAACAAAGCCTTTAGTCCCAA 58.362 40.909 0.00 0.00 0.00 4.12
1764 1775 3.306472 ACAACAAAGCCTTTAGTCCCA 57.694 42.857 0.00 0.00 0.00 4.37
1765 1776 3.383505 ACAACAACAAAGCCTTTAGTCCC 59.616 43.478 0.00 0.00 0.00 4.46
1766 1777 4.649088 ACAACAACAAAGCCTTTAGTCC 57.351 40.909 0.00 0.00 0.00 3.85
1767 1778 5.407502 ACAACAACAACAAAGCCTTTAGTC 58.592 37.500 0.00 0.00 0.00 2.59
1768 1779 5.400066 ACAACAACAACAAAGCCTTTAGT 57.600 34.783 0.00 0.00 0.00 2.24
1769 1780 5.637387 ACAACAACAACAACAAAGCCTTTAG 59.363 36.000 0.00 0.00 0.00 1.85
1770 1781 5.542779 ACAACAACAACAACAAAGCCTTTA 58.457 33.333 0.00 0.00 0.00 1.85
1771 1782 4.384940 ACAACAACAACAACAAAGCCTTT 58.615 34.783 0.00 0.00 0.00 3.11
1772 1783 4.001618 ACAACAACAACAACAAAGCCTT 57.998 36.364 0.00 0.00 0.00 4.35
1773 1784 3.676291 ACAACAACAACAACAAAGCCT 57.324 38.095 0.00 0.00 0.00 4.58
1774 1785 4.238514 TGTACAACAACAACAACAAAGCC 58.761 39.130 0.00 0.00 0.00 4.35
1775 1786 5.830900 TTGTACAACAACAACAACAAAGC 57.169 34.783 3.59 0.00 34.50 3.51
1776 1787 9.950858 CTAATTTGTACAACAACAACAACAAAG 57.049 29.630 8.07 0.00 37.90 2.77
1777 1788 9.692749 TCTAATTTGTACAACAACAACAACAAA 57.307 25.926 8.07 0.00 37.90 2.83
1778 1789 9.692749 TTCTAATTTGTACAACAACAACAACAA 57.307 25.926 8.07 0.00 37.90 2.83
1779 1790 9.130312 GTTCTAATTTGTACAACAACAACAACA 57.870 29.630 8.07 0.00 37.90 3.33
1780 1791 9.349145 AGTTCTAATTTGTACAACAACAACAAC 57.651 29.630 8.07 5.97 37.90 3.32
1781 1792 9.915629 AAGTTCTAATTTGTACAACAACAACAA 57.084 25.926 8.07 0.00 37.90 2.83
1782 1793 9.562583 GAAGTTCTAATTTGTACAACAACAACA 57.437 29.630 8.07 0.00 37.90 3.33
1783 1794 8.730427 CGAAGTTCTAATTTGTACAACAACAAC 58.270 33.333 8.07 7.94 37.90 3.32
1784 1795 8.452534 ACGAAGTTCTAATTTGTACAACAACAA 58.547 29.630 8.07 0.00 37.78 2.83
1785 1796 7.976826 ACGAAGTTCTAATTTGTACAACAACA 58.023 30.769 8.07 0.00 37.78 3.33
2060 2071 2.345991 CGAGGAACAAAGGGCCGA 59.654 61.111 0.00 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.