Multiple sequence alignment - TraesCS2B01G282900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G282900 chr2B 100.000 3937 0 0 1 3937 391094410 391090474 0.000000e+00 7271.0
1 TraesCS2B01G282900 chr4D 98.539 3080 38 5 864 3937 123318784 123321862 0.000000e+00 5432.0
2 TraesCS2B01G282900 chrUn 98.537 3076 34 4 864 3937 206781971 206785037 0.000000e+00 5421.0
3 TraesCS2B01G282900 chrUn 98.261 115 2 0 410 524 453336764 453336650 6.670000e-48 202.0
4 TraesCS2B01G282900 chr1B 98.341 3075 41 6 864 3937 672570783 672567718 0.000000e+00 5387.0
5 TraesCS2B01G282900 chr7A 98.179 3075 45 4 864 3937 60262626 60265690 0.000000e+00 5358.0
6 TraesCS2B01G282900 chr7A 97.363 3034 68 6 912 3937 46420278 46423307 0.000000e+00 5149.0
7 TraesCS2B01G282900 chr3B 97.631 3082 61 5 864 3937 669797214 669794137 0.000000e+00 5276.0
8 TraesCS2B01G282900 chr3B 97.631 3082 60 5 864 3937 483384018 483387094 0.000000e+00 5275.0
9 TraesCS2B01G282900 chr3B 95.312 128 5 1 410 536 669774236 669774109 6.670000e-48 202.0
10 TraesCS2B01G282900 chr3B 100.000 47 0 0 864 910 575858214 575858168 1.950000e-13 87.9
11 TraesCS2B01G282900 chr5A 97.792 3034 54 8 912 3937 238849203 238846175 0.000000e+00 5219.0
12 TraesCS2B01G282900 chr6B 96.816 3078 85 9 864 3935 297456433 297459503 0.000000e+00 5129.0
13 TraesCS2B01G282900 chr6B 98.261 115 2 0 410 524 503847215 503847101 6.670000e-48 202.0
14 TraesCS2B01G282900 chr5B 98.264 576 9 1 1 576 567247369 567247943 0.000000e+00 1007.0
15 TraesCS2B01G282900 chr7D 98.261 115 2 0 410 524 203496262 203496376 6.670000e-48 202.0
16 TraesCS2B01G282900 chr7D 98.261 115 2 0 410 524 381916241 381916355 6.670000e-48 202.0
17 TraesCS2B01G282900 chr6D 98.261 115 2 0 410 524 425990233 425990119 6.670000e-48 202.0
18 TraesCS2B01G282900 chr6A 98.261 115 2 0 410 524 84399916 84399802 6.670000e-48 202.0
19 TraesCS2B01G282900 chr4B 95.312 128 5 1 410 536 209296092 209296219 6.670000e-48 202.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G282900 chr2B 391090474 391094410 3936 True 7271 7271 100.000 1 3937 1 chr2B.!!$R1 3936
1 TraesCS2B01G282900 chr4D 123318784 123321862 3078 False 5432 5432 98.539 864 3937 1 chr4D.!!$F1 3073
2 TraesCS2B01G282900 chrUn 206781971 206785037 3066 False 5421 5421 98.537 864 3937 1 chrUn.!!$F1 3073
3 TraesCS2B01G282900 chr1B 672567718 672570783 3065 True 5387 5387 98.341 864 3937 1 chr1B.!!$R1 3073
4 TraesCS2B01G282900 chr7A 60262626 60265690 3064 False 5358 5358 98.179 864 3937 1 chr7A.!!$F2 3073
5 TraesCS2B01G282900 chr7A 46420278 46423307 3029 False 5149 5149 97.363 912 3937 1 chr7A.!!$F1 3025
6 TraesCS2B01G282900 chr3B 669794137 669797214 3077 True 5276 5276 97.631 864 3937 1 chr3B.!!$R3 3073
7 TraesCS2B01G282900 chr3B 483384018 483387094 3076 False 5275 5275 97.631 864 3937 1 chr3B.!!$F1 3073
8 TraesCS2B01G282900 chr5A 238846175 238849203 3028 True 5219 5219 97.792 912 3937 1 chr5A.!!$R1 3025
9 TraesCS2B01G282900 chr6B 297456433 297459503 3070 False 5129 5129 96.816 864 3935 1 chr6B.!!$F1 3071
10 TraesCS2B01G282900 chr5B 567247369 567247943 574 False 1007 1007 98.264 1 576 1 chr5B.!!$F1 575

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
367 368 0.034337 TAGGTTCTCCGTTGGTGTGC 59.966 55.0 0.00 0.00 39.05 4.57 F
719 720 0.178929 GGACTCTCACCCCGGGATAT 60.179 60.0 26.32 3.49 0.00 1.63 F
2330 2346 0.107831 CCCTTTCCGTGGTGAACTGA 59.892 55.0 0.00 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1865 1870 1.254026 TGTGCGTGCTCTTACCTACT 58.746 50.000 0.0 0.0 0.0 2.57 R
2533 2550 0.977395 AAAGCTCTCCACGCCTACTT 59.023 50.000 0.0 0.0 0.0 2.24 R
3283 3300 1.134310 TCGCTCCTATGTAGTGGTCGA 60.134 52.381 0.0 0.0 0.0 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
132 133 1.931841 GTTTCTTCGGTTCGGCTATCC 59.068 52.381 0.00 0.00 0.00 2.59
152 153 4.272489 TCCGATGATGGATTGCTTCTTTT 58.728 39.130 0.00 0.00 31.53 2.27
178 179 7.330700 TCGGAAGTTTTTGGCAATGAATTTATC 59.669 33.333 0.00 0.00 0.00 1.75
203 204 8.218441 TCGTATAAGAACTTGTTTGTGATTTCG 58.782 33.333 0.00 0.00 0.00 3.46
231 232 3.370978 CGGCTACAAGTGTCGATGAAATT 59.629 43.478 0.00 0.00 0.00 1.82
251 252 3.699779 TGTGCGCATAAACTCAACAAA 57.300 38.095 15.91 0.00 0.00 2.83
333 334 9.781633 TCATTTTCATTTTCCATTCTGAAATGT 57.218 25.926 0.00 0.00 40.63 2.71
336 337 8.606040 TTTCATTTTCCATTCTGAAATGTTCC 57.394 30.769 0.00 0.00 40.63 3.62
337 338 6.700352 TCATTTTCCATTCTGAAATGTTCCC 58.300 36.000 0.00 0.00 40.63 3.97
338 339 6.497954 TCATTTTCCATTCTGAAATGTTCCCT 59.502 34.615 0.00 0.00 40.63 4.20
339 340 5.726980 TTTCCATTCTGAAATGTTCCCTG 57.273 39.130 0.00 0.00 40.63 4.45
340 341 4.387026 TCCATTCTGAAATGTTCCCTGT 57.613 40.909 0.00 0.00 40.63 4.00
341 342 5.512942 TCCATTCTGAAATGTTCCCTGTA 57.487 39.130 0.00 0.00 40.63 2.74
342 343 5.500234 TCCATTCTGAAATGTTCCCTGTAG 58.500 41.667 0.00 0.00 40.63 2.74
343 344 5.014123 TCCATTCTGAAATGTTCCCTGTAGT 59.986 40.000 0.00 0.00 40.63 2.73
344 345 6.214615 TCCATTCTGAAATGTTCCCTGTAGTA 59.785 38.462 0.00 0.00 40.63 1.82
345 346 7.056635 CCATTCTGAAATGTTCCCTGTAGTAT 58.943 38.462 0.00 0.00 40.63 2.12
346 347 8.210946 CCATTCTGAAATGTTCCCTGTAGTATA 58.789 37.037 0.00 0.00 40.63 1.47
347 348 9.265901 CATTCTGAAATGTTCCCTGTAGTATAG 57.734 37.037 0.00 0.00 37.97 1.31
348 349 7.973048 TCTGAAATGTTCCCTGTAGTATAGT 57.027 36.000 0.00 0.00 0.00 2.12
349 350 9.483489 TTCTGAAATGTTCCCTGTAGTATAGTA 57.517 33.333 0.00 0.00 0.00 1.82
350 351 9.132923 TCTGAAATGTTCCCTGTAGTATAGTAG 57.867 37.037 0.00 0.00 0.00 2.57
351 352 8.246430 TGAAATGTTCCCTGTAGTATAGTAGG 57.754 38.462 0.00 0.00 0.00 3.18
352 353 7.842743 TGAAATGTTCCCTGTAGTATAGTAGGT 59.157 37.037 0.00 0.00 0.00 3.08
353 354 8.619683 AAATGTTCCCTGTAGTATAGTAGGTT 57.380 34.615 0.00 0.00 0.00 3.50
354 355 7.836479 ATGTTCCCTGTAGTATAGTAGGTTC 57.164 40.000 0.00 0.00 0.00 3.62
355 356 6.978261 TGTTCCCTGTAGTATAGTAGGTTCT 58.022 40.000 0.00 0.00 0.00 3.01
356 357 7.059156 TGTTCCCTGTAGTATAGTAGGTTCTC 58.941 42.308 0.00 0.00 0.00 2.87
357 358 6.198237 TCCCTGTAGTATAGTAGGTTCTCC 57.802 45.833 0.00 0.00 0.00 3.71
358 359 5.002516 CCCTGTAGTATAGTAGGTTCTCCG 58.997 50.000 0.00 0.00 39.05 4.63
359 360 5.455899 CCCTGTAGTATAGTAGGTTCTCCGT 60.456 48.000 0.00 0.00 39.05 4.69
360 361 6.060788 CCTGTAGTATAGTAGGTTCTCCGTT 58.939 44.000 0.00 0.00 39.05 4.44
361 362 6.017275 CCTGTAGTATAGTAGGTTCTCCGTTG 60.017 46.154 0.00 0.00 39.05 4.10
362 363 5.824624 TGTAGTATAGTAGGTTCTCCGTTGG 59.175 44.000 0.00 0.00 39.05 3.77
363 364 4.864726 AGTATAGTAGGTTCTCCGTTGGT 58.135 43.478 0.00 0.00 39.05 3.67
364 365 4.643784 AGTATAGTAGGTTCTCCGTTGGTG 59.356 45.833 0.00 0.00 39.05 4.17
365 366 1.713297 AGTAGGTTCTCCGTTGGTGT 58.287 50.000 0.00 0.00 39.05 4.16
366 367 1.343465 AGTAGGTTCTCCGTTGGTGTG 59.657 52.381 0.00 0.00 39.05 3.82
367 368 0.034337 TAGGTTCTCCGTTGGTGTGC 59.966 55.000 0.00 0.00 39.05 4.57
368 369 1.227853 GGTTCTCCGTTGGTGTGCT 60.228 57.895 0.00 0.00 0.00 4.40
369 370 1.228657 GGTTCTCCGTTGGTGTGCTC 61.229 60.000 0.00 0.00 0.00 4.26
370 371 0.249911 GTTCTCCGTTGGTGTGCTCT 60.250 55.000 0.00 0.00 0.00 4.09
371 372 0.468226 TTCTCCGTTGGTGTGCTCTT 59.532 50.000 0.00 0.00 0.00 2.85
372 373 0.468226 TCTCCGTTGGTGTGCTCTTT 59.532 50.000 0.00 0.00 0.00 2.52
373 374 0.868406 CTCCGTTGGTGTGCTCTTTC 59.132 55.000 0.00 0.00 0.00 2.62
374 375 0.468226 TCCGTTGGTGTGCTCTTTCT 59.532 50.000 0.00 0.00 0.00 2.52
375 376 0.588252 CCGTTGGTGTGCTCTTTCTG 59.412 55.000 0.00 0.00 0.00 3.02
376 377 1.581934 CGTTGGTGTGCTCTTTCTGA 58.418 50.000 0.00 0.00 0.00 3.27
377 378 1.939934 CGTTGGTGTGCTCTTTCTGAA 59.060 47.619 0.00 0.00 0.00 3.02
378 379 2.549754 CGTTGGTGTGCTCTTTCTGAAT 59.450 45.455 0.00 0.00 0.00 2.57
379 380 3.003689 CGTTGGTGTGCTCTTTCTGAATT 59.996 43.478 0.00 0.00 0.00 2.17
380 381 4.213270 CGTTGGTGTGCTCTTTCTGAATTA 59.787 41.667 0.00 0.00 0.00 1.40
381 382 5.615544 CGTTGGTGTGCTCTTTCTGAATTAG 60.616 44.000 0.00 0.00 0.00 1.73
382 383 4.326826 TGGTGTGCTCTTTCTGAATTAGG 58.673 43.478 0.00 0.00 0.00 2.69
383 384 4.202461 TGGTGTGCTCTTTCTGAATTAGGT 60.202 41.667 0.00 0.00 0.00 3.08
384 385 4.762251 GGTGTGCTCTTTCTGAATTAGGTT 59.238 41.667 0.00 0.00 0.00 3.50
385 386 5.335191 GGTGTGCTCTTTCTGAATTAGGTTG 60.335 44.000 0.00 0.00 0.00 3.77
386 387 4.761739 TGTGCTCTTTCTGAATTAGGTTGG 59.238 41.667 0.00 0.00 0.00 3.77
387 388 4.762251 GTGCTCTTTCTGAATTAGGTTGGT 59.238 41.667 0.00 0.00 0.00 3.67
388 389 5.938125 GTGCTCTTTCTGAATTAGGTTGGTA 59.062 40.000 0.00 0.00 0.00 3.25
389 390 6.430000 GTGCTCTTTCTGAATTAGGTTGGTAA 59.570 38.462 0.00 0.00 0.00 2.85
390 391 7.121315 GTGCTCTTTCTGAATTAGGTTGGTAAT 59.879 37.037 0.00 0.00 0.00 1.89
391 392 7.669722 TGCTCTTTCTGAATTAGGTTGGTAATT 59.330 33.333 0.00 0.00 35.68 1.40
392 393 8.184848 GCTCTTTCTGAATTAGGTTGGTAATTC 58.815 37.037 8.71 8.71 44.55 2.17
393 394 9.454859 CTCTTTCTGAATTAGGTTGGTAATTCT 57.545 33.333 14.35 0.00 44.58 2.40
406 407 7.937394 AGGTTGGTAATTCTATTTTATCCTCCG 59.063 37.037 0.00 0.00 0.00 4.63
407 408 7.718314 GGTTGGTAATTCTATTTTATCCTCCGT 59.282 37.037 0.00 0.00 0.00 4.69
408 409 9.117183 GTTGGTAATTCTATTTTATCCTCCGTT 57.883 33.333 0.00 0.00 0.00 4.44
409 410 9.689501 TTGGTAATTCTATTTTATCCTCCGTTT 57.310 29.630 0.00 0.00 0.00 3.60
410 411 9.689501 TGGTAATTCTATTTTATCCTCCGTTTT 57.310 29.630 0.00 0.00 0.00 2.43
416 417 8.276252 TCTATTTTATCCTCCGTTTTTCTTGG 57.724 34.615 0.00 0.00 0.00 3.61
417 418 6.911250 ATTTTATCCTCCGTTTTTCTTGGT 57.089 33.333 0.00 0.00 0.00 3.67
418 419 6.718522 TTTTATCCTCCGTTTTTCTTGGTT 57.281 33.333 0.00 0.00 0.00 3.67
419 420 5.699097 TTATCCTCCGTTTTTCTTGGTTG 57.301 39.130 0.00 0.00 0.00 3.77
420 421 2.303175 TCCTCCGTTTTTCTTGGTTGG 58.697 47.619 0.00 0.00 0.00 3.77
421 422 2.092321 TCCTCCGTTTTTCTTGGTTGGA 60.092 45.455 0.00 0.00 0.00 3.53
422 423 2.034179 CCTCCGTTTTTCTTGGTTGGAC 59.966 50.000 0.00 0.00 0.00 4.02
423 424 2.025898 TCCGTTTTTCTTGGTTGGACC 58.974 47.619 0.00 0.00 39.22 4.46
434 435 2.196229 TTGGACCAACCCAACCGG 59.804 61.111 1.69 0.00 40.99 5.28
435 436 4.589675 TGGACCAACCCAACCGGC 62.590 66.667 0.00 0.00 38.00 6.13
437 438 4.629523 GACCAACCCAACCGGCGA 62.630 66.667 9.30 0.00 33.26 5.54
438 439 3.912745 GACCAACCCAACCGGCGAT 62.913 63.158 9.30 0.00 33.26 4.58
439 440 2.675075 CCAACCCAACCGGCGATT 60.675 61.111 9.30 0.00 33.26 3.34
440 441 2.272447 CCAACCCAACCGGCGATTT 61.272 57.895 9.30 0.00 33.26 2.17
441 442 1.211709 CAACCCAACCGGCGATTTC 59.788 57.895 9.30 0.00 33.26 2.17
442 443 1.974875 AACCCAACCGGCGATTTCC 60.975 57.895 9.30 0.00 33.26 3.13
454 455 3.105149 GCGATTTCCGACAAGTCTTTC 57.895 47.619 0.00 0.00 41.76 2.62
455 456 2.737252 GCGATTTCCGACAAGTCTTTCT 59.263 45.455 0.00 0.00 41.76 2.52
456 457 3.423645 GCGATTTCCGACAAGTCTTTCTG 60.424 47.826 0.00 0.00 41.76 3.02
457 458 3.423645 CGATTTCCGACAAGTCTTTCTGC 60.424 47.826 0.00 0.00 41.76 4.26
458 459 2.910688 TTCCGACAAGTCTTTCTGCT 57.089 45.000 0.00 0.00 0.00 4.24
459 460 2.910688 TCCGACAAGTCTTTCTGCTT 57.089 45.000 0.00 0.00 0.00 3.91
460 461 4.330944 TTCCGACAAGTCTTTCTGCTTA 57.669 40.909 0.00 0.00 0.00 3.09
461 462 3.914312 TCCGACAAGTCTTTCTGCTTAG 58.086 45.455 0.00 0.00 0.00 2.18
462 463 3.572682 TCCGACAAGTCTTTCTGCTTAGA 59.427 43.478 0.00 0.00 0.00 2.10
463 464 3.923461 CCGACAAGTCTTTCTGCTTAGAG 59.077 47.826 0.00 0.00 0.00 2.43
464 465 3.366422 CGACAAGTCTTTCTGCTTAGAGC 59.634 47.826 0.00 0.00 42.82 4.09
481 482 3.957383 GCAAGAAGCGGAACCAAAA 57.043 47.368 0.00 0.00 0.00 2.44
482 483 2.438868 GCAAGAAGCGGAACCAAAAT 57.561 45.000 0.00 0.00 0.00 1.82
483 484 3.569250 GCAAGAAGCGGAACCAAAATA 57.431 42.857 0.00 0.00 0.00 1.40
484 485 3.908213 GCAAGAAGCGGAACCAAAATAA 58.092 40.909 0.00 0.00 0.00 1.40
485 486 4.303282 GCAAGAAGCGGAACCAAAATAAA 58.697 39.130 0.00 0.00 0.00 1.40
486 487 4.385748 GCAAGAAGCGGAACCAAAATAAAG 59.614 41.667 0.00 0.00 0.00 1.85
487 488 4.174411 AGAAGCGGAACCAAAATAAAGC 57.826 40.909 0.00 0.00 0.00 3.51
488 489 3.826729 AGAAGCGGAACCAAAATAAAGCT 59.173 39.130 0.00 0.00 34.96 3.74
489 490 4.280929 AGAAGCGGAACCAAAATAAAGCTT 59.719 37.500 0.00 0.00 44.94 3.74
490 491 4.600692 AGCGGAACCAAAATAAAGCTTT 57.399 36.364 17.30 17.30 0.00 3.51
491 492 4.556233 AGCGGAACCAAAATAAAGCTTTC 58.444 39.130 16.57 0.00 0.00 2.62
492 493 4.280929 AGCGGAACCAAAATAAAGCTTTCT 59.719 37.500 16.57 2.47 0.00 2.52
493 494 4.988540 GCGGAACCAAAATAAAGCTTTCTT 59.011 37.500 16.57 9.67 0.00 2.52
494 495 5.465390 GCGGAACCAAAATAAAGCTTTCTTT 59.535 36.000 16.57 15.52 44.22 2.52
495 496 6.643360 GCGGAACCAAAATAAAGCTTTCTTTA 59.357 34.615 16.57 0.00 45.65 1.85
533 534 9.860898 GGATAACCAATTCATTTCTTATATGGC 57.139 33.333 0.00 0.00 35.97 4.40
536 537 6.752168 ACCAATTCATTTCTTATATGGCTGC 58.248 36.000 0.00 0.00 0.00 5.25
537 538 6.161381 CCAATTCATTTCTTATATGGCTGCC 58.839 40.000 12.87 12.87 0.00 4.85
538 539 5.633830 ATTCATTTCTTATATGGCTGCCG 57.366 39.130 14.98 0.00 0.00 5.69
539 540 3.411446 TCATTTCTTATATGGCTGCCGG 58.589 45.455 14.98 0.00 0.00 6.13
540 541 3.072330 TCATTTCTTATATGGCTGCCGGA 59.928 43.478 14.98 4.30 0.00 5.14
541 542 3.569194 TTTCTTATATGGCTGCCGGAA 57.431 42.857 14.98 0.00 0.00 4.30
542 543 3.788227 TTCTTATATGGCTGCCGGAAT 57.212 42.857 14.98 9.60 0.00 3.01
543 544 3.334583 TCTTATATGGCTGCCGGAATC 57.665 47.619 14.98 0.00 0.00 2.52
544 545 2.637382 TCTTATATGGCTGCCGGAATCA 59.363 45.455 14.98 0.00 0.00 2.57
545 546 3.264193 TCTTATATGGCTGCCGGAATCAT 59.736 43.478 14.98 4.45 0.00 2.45
546 547 2.592102 ATATGGCTGCCGGAATCATT 57.408 45.000 14.98 0.00 0.00 2.57
547 548 2.363306 TATGGCTGCCGGAATCATTT 57.637 45.000 14.98 0.00 0.00 2.32
548 549 1.488390 ATGGCTGCCGGAATCATTTT 58.512 45.000 14.98 0.00 0.00 1.82
549 550 1.265236 TGGCTGCCGGAATCATTTTT 58.735 45.000 14.98 0.00 0.00 1.94
585 586 2.885113 GCTTTTAAGGCGGGGCAG 59.115 61.111 0.00 0.00 0.00 4.85
586 587 2.885113 CTTTTAAGGCGGGGCAGC 59.115 61.111 0.00 0.00 0.00 5.25
587 588 1.678970 CTTTTAAGGCGGGGCAGCT 60.679 57.895 4.29 0.00 37.29 4.24
588 589 1.937546 CTTTTAAGGCGGGGCAGCTG 61.938 60.000 10.11 10.11 37.29 4.24
589 590 3.936772 TTTAAGGCGGGGCAGCTGG 62.937 63.158 17.12 0.00 37.29 4.85
597 598 4.357279 GGGCAGCTGGCTGGACTT 62.357 66.667 35.64 0.00 43.77 3.01
598 599 2.671070 GGCAGCTGGCTGGACTTA 59.329 61.111 31.40 0.00 43.77 2.24
599 600 1.451028 GGCAGCTGGCTGGACTTAG 60.451 63.158 31.40 0.00 43.77 2.18
600 601 1.599047 GCAGCTGGCTGGACTTAGA 59.401 57.895 21.76 0.00 43.77 2.10
601 602 0.179936 GCAGCTGGCTGGACTTAGAT 59.820 55.000 21.76 0.00 43.77 1.98
602 603 1.809651 GCAGCTGGCTGGACTTAGATC 60.810 57.143 21.76 0.86 43.77 2.75
603 604 1.483827 CAGCTGGCTGGACTTAGATCA 59.516 52.381 14.11 0.00 40.17 2.92
604 605 1.484240 AGCTGGCTGGACTTAGATCAC 59.516 52.381 0.00 0.00 0.00 3.06
605 606 1.474143 GCTGGCTGGACTTAGATCACC 60.474 57.143 0.00 0.00 0.00 4.02
606 607 1.139853 CTGGCTGGACTTAGATCACCC 59.860 57.143 0.00 0.00 0.00 4.61
607 608 0.470341 GGCTGGACTTAGATCACCCC 59.530 60.000 0.00 0.00 0.00 4.95
608 609 1.204146 GCTGGACTTAGATCACCCCA 58.796 55.000 0.00 0.00 0.00 4.96
609 610 1.771255 GCTGGACTTAGATCACCCCAT 59.229 52.381 0.00 0.00 0.00 4.00
610 611 2.486191 GCTGGACTTAGATCACCCCATG 60.486 54.545 0.00 0.00 0.00 3.66
611 612 3.041211 CTGGACTTAGATCACCCCATGA 58.959 50.000 0.00 0.00 43.13 3.07
612 613 3.455910 CTGGACTTAGATCACCCCATGAA 59.544 47.826 0.00 0.00 41.93 2.57
613 614 4.047166 TGGACTTAGATCACCCCATGAAT 58.953 43.478 0.00 0.00 41.93 2.57
614 615 4.478317 TGGACTTAGATCACCCCATGAATT 59.522 41.667 0.00 0.00 41.93 2.17
615 616 4.823989 GGACTTAGATCACCCCATGAATTG 59.176 45.833 0.00 0.00 41.93 2.32
616 617 4.796606 ACTTAGATCACCCCATGAATTGG 58.203 43.478 0.00 0.00 46.00 3.16
629 630 5.927281 CATGAATTGGATTTGGAAGTCCT 57.073 39.130 0.00 0.00 35.49 3.85
631 632 7.408756 CATGAATTGGATTTGGAAGTCCTAA 57.591 36.000 0.00 0.00 35.49 2.69
632 633 7.839907 CATGAATTGGATTTGGAAGTCCTAAA 58.160 34.615 0.00 0.00 34.62 1.85
633 634 7.847711 TGAATTGGATTTGGAAGTCCTAAAA 57.152 32.000 0.00 0.00 34.62 1.52
634 635 7.666623 TGAATTGGATTTGGAAGTCCTAAAAC 58.333 34.615 0.00 0.00 34.62 2.43
635 636 7.288852 TGAATTGGATTTGGAAGTCCTAAAACA 59.711 33.333 0.00 0.00 34.62 2.83
636 637 6.648879 TTGGATTTGGAAGTCCTAAAACAG 57.351 37.500 0.00 0.00 34.62 3.16
637 638 5.947663 TGGATTTGGAAGTCCTAAAACAGA 58.052 37.500 0.00 0.00 34.62 3.41
638 639 6.369629 TGGATTTGGAAGTCCTAAAACAGAA 58.630 36.000 0.00 0.00 34.62 3.02
639 640 6.836527 TGGATTTGGAAGTCCTAAAACAGAAA 59.163 34.615 0.00 0.00 34.62 2.52
640 641 7.343316 TGGATTTGGAAGTCCTAAAACAGAAAA 59.657 33.333 0.00 0.00 34.62 2.29
641 642 8.367911 GGATTTGGAAGTCCTAAAACAGAAAAT 58.632 33.333 0.00 0.00 34.62 1.82
642 643 9.196552 GATTTGGAAGTCCTAAAACAGAAAATG 57.803 33.333 0.00 0.00 34.62 2.32
643 644 6.648879 TGGAAGTCCTAAAACAGAAAATGG 57.351 37.500 0.00 0.00 36.82 3.16
644 645 6.369629 TGGAAGTCCTAAAACAGAAAATGGA 58.630 36.000 0.00 0.00 36.82 3.41
645 646 6.836527 TGGAAGTCCTAAAACAGAAAATGGAA 59.163 34.615 0.00 0.00 36.82 3.53
646 647 7.508977 TGGAAGTCCTAAAACAGAAAATGGAAT 59.491 33.333 0.00 0.00 36.82 3.01
647 648 8.029522 GGAAGTCCTAAAACAGAAAATGGAATC 58.970 37.037 0.00 0.00 0.00 2.52
648 649 8.712228 AAGTCCTAAAACAGAAAATGGAATCT 57.288 30.769 0.00 0.00 0.00 2.40
649 650 9.807921 AAGTCCTAAAACAGAAAATGGAATCTA 57.192 29.630 0.00 0.00 0.00 1.98
650 651 9.232473 AGTCCTAAAACAGAAAATGGAATCTAC 57.768 33.333 0.00 0.00 0.00 2.59
651 652 8.175716 GTCCTAAAACAGAAAATGGAATCTACG 58.824 37.037 0.00 0.00 0.00 3.51
652 653 6.967199 CCTAAAACAGAAAATGGAATCTACGC 59.033 38.462 0.00 0.00 0.00 4.42
653 654 6.575162 AAAACAGAAAATGGAATCTACGCT 57.425 33.333 0.00 0.00 0.00 5.07
654 655 7.681939 AAAACAGAAAATGGAATCTACGCTA 57.318 32.000 0.00 0.00 0.00 4.26
655 656 7.865706 AAACAGAAAATGGAATCTACGCTAT 57.134 32.000 0.00 0.00 0.00 2.97
656 657 6.851222 ACAGAAAATGGAATCTACGCTATG 57.149 37.500 0.00 0.00 0.00 2.23
657 658 5.760253 ACAGAAAATGGAATCTACGCTATGG 59.240 40.000 0.00 0.00 0.00 2.74
658 659 5.991606 CAGAAAATGGAATCTACGCTATGGA 59.008 40.000 0.00 0.00 0.00 3.41
659 660 6.146837 CAGAAAATGGAATCTACGCTATGGAG 59.853 42.308 0.00 0.00 0.00 3.86
660 661 5.808366 AAATGGAATCTACGCTATGGAGA 57.192 39.130 0.00 0.00 0.00 3.71
661 662 4.792521 ATGGAATCTACGCTATGGAGAC 57.207 45.455 0.00 0.00 0.00 3.36
662 663 3.833732 TGGAATCTACGCTATGGAGACT 58.166 45.455 0.00 0.00 0.00 3.24
663 664 4.215908 TGGAATCTACGCTATGGAGACTT 58.784 43.478 0.00 0.00 0.00 3.01
664 665 4.649674 TGGAATCTACGCTATGGAGACTTT 59.350 41.667 0.00 0.00 0.00 2.66
665 666 5.128827 TGGAATCTACGCTATGGAGACTTTT 59.871 40.000 0.00 0.00 0.00 2.27
666 667 5.463724 GGAATCTACGCTATGGAGACTTTTG 59.536 44.000 0.00 0.00 0.00 2.44
667 668 4.386867 TCTACGCTATGGAGACTTTTGG 57.613 45.455 0.00 0.00 0.00 3.28
668 669 4.021229 TCTACGCTATGGAGACTTTTGGA 58.979 43.478 0.00 0.00 0.00 3.53
669 670 3.252974 ACGCTATGGAGACTTTTGGAG 57.747 47.619 0.00 0.00 0.00 3.86
670 671 2.832129 ACGCTATGGAGACTTTTGGAGA 59.168 45.455 0.00 0.00 0.00 3.71
671 672 3.260884 ACGCTATGGAGACTTTTGGAGAA 59.739 43.478 0.00 0.00 0.00 2.87
672 673 4.253685 CGCTATGGAGACTTTTGGAGAAA 58.746 43.478 0.00 0.00 0.00 2.52
673 674 4.695455 CGCTATGGAGACTTTTGGAGAAAA 59.305 41.667 0.00 0.00 0.00 2.29
674 675 5.390991 CGCTATGGAGACTTTTGGAGAAAAC 60.391 44.000 0.00 0.00 0.00 2.43
675 676 5.707764 GCTATGGAGACTTTTGGAGAAAACT 59.292 40.000 0.00 0.00 0.00 2.66
676 677 6.128145 GCTATGGAGACTTTTGGAGAAAACTC 60.128 42.308 0.00 0.00 0.00 3.01
677 678 4.461198 TGGAGACTTTTGGAGAAAACTCC 58.539 43.478 9.07 9.07 41.02 3.85
678 679 3.498777 GGAGACTTTTGGAGAAAACTCCG 59.501 47.826 10.95 0.79 46.18 4.63
679 680 3.477530 AGACTTTTGGAGAAAACTCCGG 58.522 45.455 10.95 0.00 46.18 5.14
680 681 2.552743 GACTTTTGGAGAAAACTCCGGG 59.447 50.000 0.00 0.00 46.18 5.73
681 682 2.092049 ACTTTTGGAGAAAACTCCGGGT 60.092 45.455 0.00 0.00 46.18 5.28
682 683 3.136992 ACTTTTGGAGAAAACTCCGGGTA 59.863 43.478 0.00 0.00 46.18 3.69
683 684 3.860968 TTTGGAGAAAACTCCGGGTAA 57.139 42.857 0.00 0.00 46.18 2.85
684 685 4.376225 TTTGGAGAAAACTCCGGGTAAT 57.624 40.909 0.00 0.00 46.18 1.89
685 686 3.343941 TGGAGAAAACTCCGGGTAATG 57.656 47.619 0.00 0.00 46.18 1.90
686 687 2.640826 TGGAGAAAACTCCGGGTAATGT 59.359 45.455 0.00 0.00 46.18 2.71
687 688 3.268330 GGAGAAAACTCCGGGTAATGTC 58.732 50.000 0.00 0.00 33.39 3.06
688 689 3.268330 GAGAAAACTCCGGGTAATGTCC 58.732 50.000 0.00 0.00 0.00 4.02
689 690 2.640826 AGAAAACTCCGGGTAATGTCCA 59.359 45.455 0.00 0.00 0.00 4.02
690 691 3.073356 AGAAAACTCCGGGTAATGTCCAA 59.927 43.478 0.00 0.00 0.00 3.53
691 692 3.732048 AAACTCCGGGTAATGTCCAAT 57.268 42.857 0.00 0.00 0.00 3.16
692 693 3.732048 AACTCCGGGTAATGTCCAATT 57.268 42.857 0.00 0.00 0.00 2.32
693 694 4.847990 AACTCCGGGTAATGTCCAATTA 57.152 40.909 0.00 0.00 0.00 1.40
694 695 4.146745 ACTCCGGGTAATGTCCAATTAC 57.853 45.455 0.00 0.55 34.63 1.89
716 717 4.393778 GGGACTCTCACCCCGGGA 62.394 72.222 26.32 0.00 41.38 5.14
717 718 2.041819 GGACTCTCACCCCGGGAT 60.042 66.667 26.32 0.00 0.00 3.85
718 719 1.232216 GGACTCTCACCCCGGGATA 59.768 63.158 26.32 5.51 0.00 2.59
719 720 0.178929 GGACTCTCACCCCGGGATAT 60.179 60.000 26.32 3.49 0.00 1.63
720 721 1.258676 GACTCTCACCCCGGGATATC 58.741 60.000 26.32 5.55 0.00 1.63
721 722 0.861155 ACTCTCACCCCGGGATATCT 59.139 55.000 26.32 0.00 0.00 1.98
722 723 1.220750 ACTCTCACCCCGGGATATCTT 59.779 52.381 26.32 0.00 0.00 2.40
723 724 2.330216 CTCTCACCCCGGGATATCTTT 58.670 52.381 26.32 0.00 0.00 2.52
724 725 3.116862 ACTCTCACCCCGGGATATCTTTA 60.117 47.826 26.32 0.00 0.00 1.85
725 726 3.901844 CTCTCACCCCGGGATATCTTTAA 59.098 47.826 26.32 0.00 0.00 1.52
726 727 4.499472 TCTCACCCCGGGATATCTTTAAT 58.501 43.478 26.32 0.00 0.00 1.40
727 728 5.657446 TCTCACCCCGGGATATCTTTAATA 58.343 41.667 26.32 0.00 0.00 0.98
728 729 6.086095 TCTCACCCCGGGATATCTTTAATAA 58.914 40.000 26.32 0.00 0.00 1.40
729 730 6.559539 TCTCACCCCGGGATATCTTTAATAAA 59.440 38.462 26.32 0.00 0.00 1.40
730 731 7.072708 TCTCACCCCGGGATATCTTTAATAAAA 59.927 37.037 26.32 0.00 0.00 1.52
731 732 7.761608 TCACCCCGGGATATCTTTAATAAAAT 58.238 34.615 26.32 0.00 0.00 1.82
732 733 7.668052 TCACCCCGGGATATCTTTAATAAAATG 59.332 37.037 26.32 0.00 0.00 2.32
733 734 7.668052 CACCCCGGGATATCTTTAATAAAATGA 59.332 37.037 26.32 0.00 0.00 2.57
734 735 8.398743 ACCCCGGGATATCTTTAATAAAATGAT 58.601 33.333 26.32 0.00 0.00 2.45
735 736 9.255029 CCCCGGGATATCTTTAATAAAATGATT 57.745 33.333 26.32 0.00 0.00 2.57
747 748 9.959693 TTTAATAAAATGATTTATCCTGGGGGA 57.040 29.630 0.00 0.00 46.81 4.81
757 758 2.422939 TCCTGGGGGATCCATAGAAG 57.577 55.000 15.23 3.26 46.01 2.85
758 759 1.873049 TCCTGGGGGATCCATAGAAGA 59.127 52.381 15.23 0.00 46.01 2.87
759 760 2.252676 TCCTGGGGGATCCATAGAAGAA 59.747 50.000 15.23 0.00 46.01 2.52
760 761 2.373502 CCTGGGGGATCCATAGAAGAAC 59.626 54.545 15.23 0.00 46.01 3.01
761 762 3.048600 CTGGGGGATCCATAGAAGAACA 58.951 50.000 15.23 0.00 46.01 3.18
762 763 3.459598 CTGGGGGATCCATAGAAGAACAA 59.540 47.826 15.23 0.00 46.01 2.83
763 764 3.855599 TGGGGGATCCATAGAAGAACAAA 59.144 43.478 15.23 0.00 41.46 2.83
764 765 4.482025 TGGGGGATCCATAGAAGAACAAAT 59.518 41.667 15.23 0.00 41.46 2.32
765 766 5.043432 TGGGGGATCCATAGAAGAACAAATT 60.043 40.000 15.23 0.00 41.46 1.82
766 767 5.536538 GGGGGATCCATAGAAGAACAAATTC 59.463 44.000 15.23 0.00 35.00 2.17
767 768 6.638191 GGGGGATCCATAGAAGAACAAATTCT 60.638 42.308 15.23 0.00 40.26 2.40
768 769 7.421382 GGGGGATCCATAGAAGAACAAATTCTA 60.421 40.741 15.23 0.00 42.00 2.10
769 770 8.166726 GGGGATCCATAGAAGAACAAATTCTAT 58.833 37.037 15.23 3.04 44.82 1.98
770 771 9.225436 GGGATCCATAGAAGAACAAATTCTATC 57.775 37.037 15.23 0.00 44.82 2.08
771 772 9.784531 GGATCCATAGAAGAACAAATTCTATCA 57.215 33.333 6.95 0.00 44.82 2.15
812 813 9.194972 TCTTGATTTAATTAACCATGGCATACA 57.805 29.630 13.04 0.00 0.00 2.29
813 814 9.814899 CTTGATTTAATTAACCATGGCATACAA 57.185 29.630 13.04 3.76 0.00 2.41
815 816 9.814899 TGATTTAATTAACCATGGCATACAAAG 57.185 29.630 13.04 0.00 0.00 2.77
816 817 9.816354 GATTTAATTAACCATGGCATACAAAGT 57.184 29.630 13.04 0.00 0.00 2.66
820 821 7.954666 ATTAACCATGGCATACAAAGTAAGT 57.045 32.000 13.04 0.00 0.00 2.24
821 822 9.469097 AATTAACCATGGCATACAAAGTAAGTA 57.531 29.630 13.04 0.00 0.00 2.24
822 823 6.753107 AACCATGGCATACAAAGTAAGTAC 57.247 37.500 13.04 0.00 0.00 2.73
823 824 6.062258 ACCATGGCATACAAAGTAAGTACT 57.938 37.500 13.04 0.00 38.39 2.73
855 856 8.532977 TCTTTTTAAATGAATTAGCAGTTGCC 57.467 30.769 0.00 0.00 43.38 4.52
856 857 8.147058 TCTTTTTAAATGAATTAGCAGTTGCCA 58.853 29.630 0.00 0.00 43.38 4.92
857 858 7.650834 TTTTAAATGAATTAGCAGTTGCCAC 57.349 32.000 0.00 0.00 43.38 5.01
858 859 4.870123 AAATGAATTAGCAGTTGCCACA 57.130 36.364 0.00 0.00 43.38 4.17
859 860 3.855689 ATGAATTAGCAGTTGCCACAC 57.144 42.857 0.00 0.00 43.38 3.82
860 861 2.862541 TGAATTAGCAGTTGCCACACT 58.137 42.857 0.00 0.00 43.38 3.55
861 862 2.553602 TGAATTAGCAGTTGCCACACTG 59.446 45.455 0.00 3.91 46.15 3.66
862 863 2.276732 ATTAGCAGTTGCCACACTGT 57.723 45.000 0.00 1.02 45.31 3.55
966 967 5.859495 TCAGTCTCCTTTCCTTTCTCTTTC 58.141 41.667 0.00 0.00 0.00 2.62
1065 1070 2.409055 TGATGCTGCGGAACCATGC 61.409 57.895 0.00 0.00 0.00 4.06
1329 1334 6.258727 CGTTTGCTCTGTTATACTCAATGGAT 59.741 38.462 0.00 0.00 0.00 3.41
1599 1604 5.652014 CCATTCTTGTTATTGCTGGAGGTAA 59.348 40.000 0.00 0.00 0.00 2.85
1725 1730 2.228822 GTGGCATACAACTTTGGACCTG 59.771 50.000 0.00 0.00 0.00 4.00
1749 1754 1.004679 TGGTCCCGTTACCTTTCGC 60.005 57.895 5.17 0.00 40.44 4.70
1818 1823 1.059584 TGGGCCAAGAGAGGACAACA 61.060 55.000 2.13 0.00 38.98 3.33
2032 2037 6.880484 TCCTATGATCTAGATAGACTCCGTC 58.120 44.000 4.89 0.00 34.72 4.79
2088 2096 1.153086 GTGGGACCTGCTGGCATAG 60.153 63.158 9.95 0.00 36.63 2.23
2270 2286 5.596361 GGTGAGGAATCACTCTTGAGATCTA 59.404 44.000 8.18 0.00 40.28 1.98
2330 2346 0.107831 CCCTTTCCGTGGTGAACTGA 59.892 55.000 0.00 0.00 0.00 3.41
2363 2379 4.232221 CCTTCATTTTGTCTCATGTGTGC 58.768 43.478 0.00 0.00 0.00 4.57
2921 2938 4.634004 CGTGGAACTAATCATGCCTTTACA 59.366 41.667 0.00 0.00 31.75 2.41
2931 2948 3.449377 TCATGCCTTTACACCTATCGTCA 59.551 43.478 0.00 0.00 0.00 4.35
2934 2951 5.801531 TGCCTTTACACCTATCGTCATAT 57.198 39.130 0.00 0.00 0.00 1.78
3162 3179 5.008415 GCCTTACTACATGAGCTCGTAAGTA 59.992 44.000 24.56 22.07 36.78 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
132 133 4.277258 CGAAAAGAAGCAATCCATCATCG 58.723 43.478 0.00 0.00 0.00 3.84
147 148 4.457834 TTGCCAAAAACTTCCGAAAAGA 57.542 36.364 4.76 0.00 0.00 2.52
152 153 4.599047 ATTCATTGCCAAAAACTTCCGA 57.401 36.364 0.00 0.00 0.00 4.55
178 179 7.006210 GCGAAATCACAAACAAGTTCTTATACG 59.994 37.037 0.00 0.00 0.00 3.06
203 204 1.355066 GACACTTGTAGCCGAGCAGC 61.355 60.000 0.00 0.00 0.00 5.25
231 232 3.699779 TTTGTTGAGTTTATGCGCACA 57.300 38.095 14.90 0.00 0.00 4.57
332 333 6.489700 GGAGAACCTACTATACTACAGGGAAC 59.510 46.154 0.00 0.00 32.12 3.62
333 334 6.608922 GGAGAACCTACTATACTACAGGGAA 58.391 44.000 0.00 0.00 32.12 3.97
334 335 5.221803 CGGAGAACCTACTATACTACAGGGA 60.222 48.000 0.00 0.00 32.12 4.20
335 336 5.002516 CGGAGAACCTACTATACTACAGGG 58.997 50.000 0.00 0.00 32.12 4.45
336 337 5.619220 ACGGAGAACCTACTATACTACAGG 58.381 45.833 0.00 0.00 0.00 4.00
337 338 6.017275 CCAACGGAGAACCTACTATACTACAG 60.017 46.154 0.00 0.00 0.00 2.74
338 339 5.824624 CCAACGGAGAACCTACTATACTACA 59.175 44.000 0.00 0.00 0.00 2.74
339 340 5.825151 ACCAACGGAGAACCTACTATACTAC 59.175 44.000 0.00 0.00 0.00 2.73
340 341 5.824624 CACCAACGGAGAACCTACTATACTA 59.175 44.000 0.00 0.00 0.00 1.82
341 342 4.643784 CACCAACGGAGAACCTACTATACT 59.356 45.833 0.00 0.00 0.00 2.12
342 343 4.400567 ACACCAACGGAGAACCTACTATAC 59.599 45.833 0.00 0.00 0.00 1.47
343 344 4.400251 CACACCAACGGAGAACCTACTATA 59.600 45.833 0.00 0.00 0.00 1.31
344 345 3.194968 CACACCAACGGAGAACCTACTAT 59.805 47.826 0.00 0.00 0.00 2.12
345 346 2.559668 CACACCAACGGAGAACCTACTA 59.440 50.000 0.00 0.00 0.00 1.82
346 347 1.343465 CACACCAACGGAGAACCTACT 59.657 52.381 0.00 0.00 0.00 2.57
347 348 1.792006 CACACCAACGGAGAACCTAC 58.208 55.000 0.00 0.00 0.00 3.18
348 349 0.034337 GCACACCAACGGAGAACCTA 59.966 55.000 0.00 0.00 0.00 3.08
349 350 1.227853 GCACACCAACGGAGAACCT 60.228 57.895 0.00 0.00 0.00 3.50
350 351 1.227853 AGCACACCAACGGAGAACC 60.228 57.895 0.00 0.00 0.00 3.62
351 352 0.249911 AGAGCACACCAACGGAGAAC 60.250 55.000 0.00 0.00 0.00 3.01
352 353 0.468226 AAGAGCACACCAACGGAGAA 59.532 50.000 0.00 0.00 0.00 2.87
353 354 0.468226 AAAGAGCACACCAACGGAGA 59.532 50.000 0.00 0.00 0.00 3.71
354 355 0.868406 GAAAGAGCACACCAACGGAG 59.132 55.000 0.00 0.00 0.00 4.63
355 356 0.468226 AGAAAGAGCACACCAACGGA 59.532 50.000 0.00 0.00 0.00 4.69
356 357 0.588252 CAGAAAGAGCACACCAACGG 59.412 55.000 0.00 0.00 0.00 4.44
357 358 1.581934 TCAGAAAGAGCACACCAACG 58.418 50.000 0.00 0.00 0.00 4.10
358 359 4.574599 AATTCAGAAAGAGCACACCAAC 57.425 40.909 0.00 0.00 0.00 3.77
359 360 4.761739 CCTAATTCAGAAAGAGCACACCAA 59.238 41.667 0.00 0.00 0.00 3.67
360 361 4.202461 ACCTAATTCAGAAAGAGCACACCA 60.202 41.667 0.00 0.00 0.00 4.17
361 362 4.327680 ACCTAATTCAGAAAGAGCACACC 58.672 43.478 0.00 0.00 0.00 4.16
362 363 5.335191 CCAACCTAATTCAGAAAGAGCACAC 60.335 44.000 0.00 0.00 0.00 3.82
363 364 4.761739 CCAACCTAATTCAGAAAGAGCACA 59.238 41.667 0.00 0.00 0.00 4.57
364 365 4.762251 ACCAACCTAATTCAGAAAGAGCAC 59.238 41.667 0.00 0.00 0.00 4.40
365 366 4.985538 ACCAACCTAATTCAGAAAGAGCA 58.014 39.130 0.00 0.00 0.00 4.26
366 367 7.631717 ATTACCAACCTAATTCAGAAAGAGC 57.368 36.000 0.00 0.00 0.00 4.09
367 368 9.454859 AGAATTACCAACCTAATTCAGAAAGAG 57.545 33.333 12.10 0.00 42.21 2.85
380 381 7.937394 CGGAGGATAAAATAGAATTACCAACCT 59.063 37.037 0.00 0.00 0.00 3.50
381 382 7.718314 ACGGAGGATAAAATAGAATTACCAACC 59.282 37.037 0.00 0.00 0.00 3.77
382 383 8.672823 ACGGAGGATAAAATAGAATTACCAAC 57.327 34.615 0.00 0.00 0.00 3.77
383 384 9.689501 AAACGGAGGATAAAATAGAATTACCAA 57.310 29.630 0.00 0.00 0.00 3.67
384 385 9.689501 AAAACGGAGGATAAAATAGAATTACCA 57.310 29.630 0.00 0.00 0.00 3.25
390 391 8.736244 CCAAGAAAAACGGAGGATAAAATAGAA 58.264 33.333 0.00 0.00 0.00 2.10
391 392 7.886446 ACCAAGAAAAACGGAGGATAAAATAGA 59.114 33.333 0.00 0.00 0.00 1.98
392 393 8.051901 ACCAAGAAAAACGGAGGATAAAATAG 57.948 34.615 0.00 0.00 0.00 1.73
393 394 8.301002 CAACCAAGAAAAACGGAGGATAAAATA 58.699 33.333 0.00 0.00 0.00 1.40
394 395 6.911250 ACCAAGAAAAACGGAGGATAAAAT 57.089 33.333 0.00 0.00 0.00 1.82
395 396 6.461788 CCAACCAAGAAAAACGGAGGATAAAA 60.462 38.462 0.00 0.00 0.00 1.52
396 397 5.010213 CCAACCAAGAAAAACGGAGGATAAA 59.990 40.000 0.00 0.00 0.00 1.40
397 398 4.521256 CCAACCAAGAAAAACGGAGGATAA 59.479 41.667 0.00 0.00 0.00 1.75
398 399 4.076394 CCAACCAAGAAAAACGGAGGATA 58.924 43.478 0.00 0.00 0.00 2.59
399 400 2.890945 CCAACCAAGAAAAACGGAGGAT 59.109 45.455 0.00 0.00 0.00 3.24
400 401 2.092321 TCCAACCAAGAAAAACGGAGGA 60.092 45.455 0.00 0.00 0.00 3.71
401 402 2.034179 GTCCAACCAAGAAAAACGGAGG 59.966 50.000 0.00 0.00 0.00 4.30
402 403 2.034179 GGTCCAACCAAGAAAAACGGAG 59.966 50.000 0.00 0.00 38.42 4.63
403 404 2.025898 GGTCCAACCAAGAAAAACGGA 58.974 47.619 0.00 0.00 38.42 4.69
404 405 2.502213 GGTCCAACCAAGAAAAACGG 57.498 50.000 0.00 0.00 38.42 4.44
417 418 2.196229 CCGGTTGGGTTGGTCCAA 59.804 61.111 0.00 0.00 43.82 3.53
418 419 4.589675 GCCGGTTGGGTTGGTCCA 62.590 66.667 1.90 0.00 38.44 4.02
420 421 3.912745 ATCGCCGGTTGGGTTGGTC 62.913 63.158 1.90 0.00 38.44 4.02
421 422 2.987355 AAATCGCCGGTTGGGTTGGT 62.987 55.000 1.90 0.00 38.44 3.67
422 423 2.207788 GAAATCGCCGGTTGGGTTGG 62.208 60.000 1.90 0.00 38.44 3.77
423 424 1.211709 GAAATCGCCGGTTGGGTTG 59.788 57.895 1.90 0.00 38.44 3.77
424 425 1.974875 GGAAATCGCCGGTTGGGTT 60.975 57.895 1.90 0.00 38.44 4.11
425 426 2.360726 GGAAATCGCCGGTTGGGT 60.361 61.111 1.90 0.00 38.44 4.51
433 434 1.439679 AAGACTTGTCGGAAATCGCC 58.560 50.000 0.00 0.00 39.05 5.54
434 435 2.737252 AGAAAGACTTGTCGGAAATCGC 59.263 45.455 0.00 0.00 39.05 4.58
435 436 3.423645 GCAGAAAGACTTGTCGGAAATCG 60.424 47.826 0.00 0.00 40.90 3.34
436 437 3.748568 AGCAGAAAGACTTGTCGGAAATC 59.251 43.478 0.00 0.00 0.00 2.17
437 438 3.744660 AGCAGAAAGACTTGTCGGAAAT 58.255 40.909 0.00 0.00 0.00 2.17
438 439 3.194005 AGCAGAAAGACTTGTCGGAAA 57.806 42.857 0.00 0.00 0.00 3.13
439 440 2.910688 AGCAGAAAGACTTGTCGGAA 57.089 45.000 0.00 0.00 0.00 4.30
440 441 2.910688 AAGCAGAAAGACTTGTCGGA 57.089 45.000 0.00 0.00 0.00 4.55
441 442 3.914312 TCTAAGCAGAAAGACTTGTCGG 58.086 45.455 0.00 0.00 0.00 4.79
442 443 3.366422 GCTCTAAGCAGAAAGACTTGTCG 59.634 47.826 0.00 0.00 41.89 4.35
443 444 4.919677 GCTCTAAGCAGAAAGACTTGTC 57.080 45.455 0.00 0.00 41.89 3.18
456 457 1.395262 GTTCCGCTTCTTGCTCTAAGC 59.605 52.381 7.23 7.23 43.71 3.09
457 458 2.003301 GGTTCCGCTTCTTGCTCTAAG 58.997 52.381 0.00 0.00 40.11 2.18
458 459 1.346395 TGGTTCCGCTTCTTGCTCTAA 59.654 47.619 0.00 0.00 40.11 2.10
459 460 0.973632 TGGTTCCGCTTCTTGCTCTA 59.026 50.000 0.00 0.00 40.11 2.43
460 461 0.108585 TTGGTTCCGCTTCTTGCTCT 59.891 50.000 0.00 0.00 40.11 4.09
461 462 0.951558 TTTGGTTCCGCTTCTTGCTC 59.048 50.000 0.00 0.00 40.11 4.26
462 463 1.398692 TTTTGGTTCCGCTTCTTGCT 58.601 45.000 0.00 0.00 40.11 3.91
463 464 2.438868 ATTTTGGTTCCGCTTCTTGC 57.561 45.000 0.00 0.00 38.57 4.01
464 465 4.385748 GCTTTATTTTGGTTCCGCTTCTTG 59.614 41.667 0.00 0.00 0.00 3.02
465 466 4.280929 AGCTTTATTTTGGTTCCGCTTCTT 59.719 37.500 0.00 0.00 0.00 2.52
466 467 3.826729 AGCTTTATTTTGGTTCCGCTTCT 59.173 39.130 0.00 0.00 0.00 2.85
467 468 4.174411 AGCTTTATTTTGGTTCCGCTTC 57.826 40.909 0.00 0.00 0.00 3.86
468 469 4.600692 AAGCTTTATTTTGGTTCCGCTT 57.399 36.364 0.00 0.00 0.00 4.68
469 470 4.280929 AGAAAGCTTTATTTTGGTTCCGCT 59.719 37.500 12.68 0.00 0.00 5.52
470 471 4.556233 AGAAAGCTTTATTTTGGTTCCGC 58.444 39.130 12.68 0.00 0.00 5.54
507 508 9.860898 GCCATATAAGAAATGAATTGGTTATCC 57.139 33.333 0.00 0.00 0.00 2.59
510 511 8.359642 GCAGCCATATAAGAAATGAATTGGTTA 58.640 33.333 0.00 0.00 0.00 2.85
511 512 7.212274 GCAGCCATATAAGAAATGAATTGGTT 58.788 34.615 0.00 0.00 0.00 3.67
512 513 6.239402 GGCAGCCATATAAGAAATGAATTGGT 60.239 38.462 6.55 0.00 0.00 3.67
513 514 6.161381 GGCAGCCATATAAGAAATGAATTGG 58.839 40.000 6.55 0.00 0.00 3.16
514 515 5.860182 CGGCAGCCATATAAGAAATGAATTG 59.140 40.000 13.30 0.00 0.00 2.32
515 516 5.047802 CCGGCAGCCATATAAGAAATGAATT 60.048 40.000 13.30 0.00 0.00 2.17
516 517 4.460382 CCGGCAGCCATATAAGAAATGAAT 59.540 41.667 13.30 0.00 0.00 2.57
517 518 3.820467 CCGGCAGCCATATAAGAAATGAA 59.180 43.478 13.30 0.00 0.00 2.57
518 519 3.072330 TCCGGCAGCCATATAAGAAATGA 59.928 43.478 13.30 0.00 0.00 2.57
519 520 3.411446 TCCGGCAGCCATATAAGAAATG 58.589 45.455 13.30 0.00 0.00 2.32
520 521 3.788227 TCCGGCAGCCATATAAGAAAT 57.212 42.857 13.30 0.00 0.00 2.17
521 522 3.569194 TTCCGGCAGCCATATAAGAAA 57.431 42.857 13.30 0.00 0.00 2.52
522 523 3.072330 TGATTCCGGCAGCCATATAAGAA 59.928 43.478 13.30 4.48 0.00 2.52
523 524 2.637382 TGATTCCGGCAGCCATATAAGA 59.363 45.455 13.30 0.00 0.00 2.10
524 525 3.057969 TGATTCCGGCAGCCATATAAG 57.942 47.619 13.30 0.00 0.00 1.73
525 526 3.719268 ATGATTCCGGCAGCCATATAA 57.281 42.857 13.30 0.00 0.00 0.98
526 527 3.719268 AATGATTCCGGCAGCCATATA 57.281 42.857 13.30 0.00 0.00 0.86
527 528 2.592102 AATGATTCCGGCAGCCATAT 57.408 45.000 13.30 0.40 0.00 1.78
528 529 2.363306 AAATGATTCCGGCAGCCATA 57.637 45.000 13.30 0.00 0.00 2.74
529 530 1.488390 AAAATGATTCCGGCAGCCAT 58.512 45.000 13.30 0.00 0.00 4.40
530 531 1.265236 AAAAATGATTCCGGCAGCCA 58.735 45.000 13.30 0.00 0.00 4.75
568 569 2.885113 CTGCCCCGCCTTAAAAGC 59.115 61.111 0.00 0.00 0.00 3.51
569 570 1.678970 AGCTGCCCCGCCTTAAAAG 60.679 57.895 0.00 0.00 0.00 2.27
570 571 1.976474 CAGCTGCCCCGCCTTAAAA 60.976 57.895 0.00 0.00 0.00 1.52
571 572 2.361104 CAGCTGCCCCGCCTTAAA 60.361 61.111 0.00 0.00 0.00 1.52
572 573 4.424711 CCAGCTGCCCCGCCTTAA 62.425 66.667 8.66 0.00 0.00 1.85
580 581 2.883267 CTAAGTCCAGCCAGCTGCCC 62.883 65.000 14.26 6.42 42.35 5.36
581 582 1.451028 CTAAGTCCAGCCAGCTGCC 60.451 63.158 14.26 0.00 42.35 4.85
582 583 0.179936 ATCTAAGTCCAGCCAGCTGC 59.820 55.000 14.26 3.91 42.35 5.25
583 584 1.483827 TGATCTAAGTCCAGCCAGCTG 59.516 52.381 12.78 12.78 43.26 4.24
584 585 1.484240 GTGATCTAAGTCCAGCCAGCT 59.516 52.381 0.00 0.00 0.00 4.24
585 586 1.474143 GGTGATCTAAGTCCAGCCAGC 60.474 57.143 0.00 0.00 0.00 4.85
586 587 1.139853 GGGTGATCTAAGTCCAGCCAG 59.860 57.143 0.00 0.00 45.08 4.85
587 588 1.204146 GGGTGATCTAAGTCCAGCCA 58.796 55.000 0.00 0.00 45.08 4.75
588 589 0.470341 GGGGTGATCTAAGTCCAGCC 59.530 60.000 0.00 0.00 45.02 4.85
589 590 1.204146 TGGGGTGATCTAAGTCCAGC 58.796 55.000 0.00 0.00 0.00 4.85
590 591 3.041211 TCATGGGGTGATCTAAGTCCAG 58.959 50.000 0.00 0.00 0.00 3.86
591 592 3.129262 TCATGGGGTGATCTAAGTCCA 57.871 47.619 0.00 0.00 0.00 4.02
592 593 4.713792 ATTCATGGGGTGATCTAAGTCC 57.286 45.455 0.00 0.00 36.54 3.85
593 594 4.823989 CCAATTCATGGGGTGATCTAAGTC 59.176 45.833 0.00 0.00 46.27 3.01
594 595 4.796606 CCAATTCATGGGGTGATCTAAGT 58.203 43.478 0.00 0.00 46.27 2.24
604 605 7.143555 GGACTTCCAAATCCAATTCATGGGG 62.144 48.000 0.00 0.00 42.09 4.96
605 606 4.141869 GGACTTCCAAATCCAATTCATGGG 60.142 45.833 0.00 0.00 42.09 4.00
606 607 4.713321 AGGACTTCCAAATCCAATTCATGG 59.287 41.667 0.00 0.00 44.47 3.66
607 608 5.927281 AGGACTTCCAAATCCAATTCATG 57.073 39.130 0.00 0.00 37.47 3.07
608 609 8.314021 GTTTTAGGACTTCCAAATCCAATTCAT 58.686 33.333 0.00 0.00 37.47 2.57
609 610 7.288852 TGTTTTAGGACTTCCAAATCCAATTCA 59.711 33.333 0.00 0.00 37.47 2.57
610 611 7.666623 TGTTTTAGGACTTCCAAATCCAATTC 58.333 34.615 0.00 0.00 37.47 2.17
611 612 7.508977 TCTGTTTTAGGACTTCCAAATCCAATT 59.491 33.333 0.00 0.00 37.47 2.32
612 613 7.010160 TCTGTTTTAGGACTTCCAAATCCAAT 58.990 34.615 0.00 0.00 37.47 3.16
613 614 6.369629 TCTGTTTTAGGACTTCCAAATCCAA 58.630 36.000 0.00 0.00 37.47 3.53
614 615 5.947663 TCTGTTTTAGGACTTCCAAATCCA 58.052 37.500 0.00 0.00 37.47 3.41
615 616 6.894339 TTCTGTTTTAGGACTTCCAAATCC 57.106 37.500 0.00 0.00 38.89 3.01
616 617 9.196552 CATTTTCTGTTTTAGGACTTCCAAATC 57.803 33.333 0.00 0.00 38.89 2.17
617 618 8.150296 CCATTTTCTGTTTTAGGACTTCCAAAT 58.850 33.333 0.00 0.00 38.89 2.32
618 619 7.343316 TCCATTTTCTGTTTTAGGACTTCCAAA 59.657 33.333 0.00 0.00 38.89 3.28
619 620 6.836527 TCCATTTTCTGTTTTAGGACTTCCAA 59.163 34.615 0.00 0.00 38.89 3.53
620 621 6.369629 TCCATTTTCTGTTTTAGGACTTCCA 58.630 36.000 0.00 0.00 38.89 3.53
621 622 6.894339 TCCATTTTCTGTTTTAGGACTTCC 57.106 37.500 0.00 0.00 0.00 3.46
622 623 8.797438 AGATTCCATTTTCTGTTTTAGGACTTC 58.203 33.333 0.00 0.00 0.00 3.01
623 624 8.712228 AGATTCCATTTTCTGTTTTAGGACTT 57.288 30.769 0.00 0.00 0.00 3.01
624 625 9.232473 GTAGATTCCATTTTCTGTTTTAGGACT 57.768 33.333 0.00 0.00 0.00 3.85
625 626 8.175716 CGTAGATTCCATTTTCTGTTTTAGGAC 58.824 37.037 0.00 0.00 0.00 3.85
626 627 7.148306 GCGTAGATTCCATTTTCTGTTTTAGGA 60.148 37.037 0.00 0.00 0.00 2.94
627 628 6.967199 GCGTAGATTCCATTTTCTGTTTTAGG 59.033 38.462 0.00 0.00 0.00 2.69
628 629 7.752695 AGCGTAGATTCCATTTTCTGTTTTAG 58.247 34.615 0.00 0.00 0.00 1.85
629 630 7.681939 AGCGTAGATTCCATTTTCTGTTTTA 57.318 32.000 0.00 0.00 0.00 1.52
630 631 6.575162 AGCGTAGATTCCATTTTCTGTTTT 57.425 33.333 0.00 0.00 0.00 2.43
631 632 7.201732 CCATAGCGTAGATTCCATTTTCTGTTT 60.202 37.037 0.00 0.00 0.00 2.83
632 633 6.260936 CCATAGCGTAGATTCCATTTTCTGTT 59.739 38.462 0.00 0.00 0.00 3.16
633 634 5.760253 CCATAGCGTAGATTCCATTTTCTGT 59.240 40.000 0.00 0.00 0.00 3.41
634 635 5.991606 TCCATAGCGTAGATTCCATTTTCTG 59.008 40.000 0.00 0.00 0.00 3.02
635 636 6.042093 TCTCCATAGCGTAGATTCCATTTTCT 59.958 38.462 0.00 0.00 0.00 2.52
636 637 6.146347 GTCTCCATAGCGTAGATTCCATTTTC 59.854 42.308 0.00 0.00 0.00 2.29
637 638 5.992217 GTCTCCATAGCGTAGATTCCATTTT 59.008 40.000 0.00 0.00 0.00 1.82
638 639 5.305644 AGTCTCCATAGCGTAGATTCCATTT 59.694 40.000 0.00 0.00 0.00 2.32
639 640 4.835615 AGTCTCCATAGCGTAGATTCCATT 59.164 41.667 0.00 0.00 0.00 3.16
640 641 4.411927 AGTCTCCATAGCGTAGATTCCAT 58.588 43.478 0.00 0.00 0.00 3.41
641 642 3.833732 AGTCTCCATAGCGTAGATTCCA 58.166 45.455 0.00 0.00 0.00 3.53
642 643 4.857509 AAGTCTCCATAGCGTAGATTCC 57.142 45.455 0.00 0.00 0.00 3.01
643 644 5.463724 CCAAAAGTCTCCATAGCGTAGATTC 59.536 44.000 0.00 0.00 0.00 2.52
644 645 5.128827 TCCAAAAGTCTCCATAGCGTAGATT 59.871 40.000 0.00 0.00 0.00 2.40
645 646 4.649674 TCCAAAAGTCTCCATAGCGTAGAT 59.350 41.667 0.00 0.00 0.00 1.98
646 647 4.021229 TCCAAAAGTCTCCATAGCGTAGA 58.979 43.478 0.00 0.00 0.00 2.59
647 648 4.098044 TCTCCAAAAGTCTCCATAGCGTAG 59.902 45.833 0.00 0.00 0.00 3.51
648 649 4.021229 TCTCCAAAAGTCTCCATAGCGTA 58.979 43.478 0.00 0.00 0.00 4.42
649 650 2.832129 TCTCCAAAAGTCTCCATAGCGT 59.168 45.455 0.00 0.00 0.00 5.07
650 651 3.526931 TCTCCAAAAGTCTCCATAGCG 57.473 47.619 0.00 0.00 0.00 4.26
651 652 5.707764 AGTTTTCTCCAAAAGTCTCCATAGC 59.292 40.000 0.00 0.00 30.48 2.97
652 653 7.371126 GAGTTTTCTCCAAAAGTCTCCATAG 57.629 40.000 7.49 0.00 44.06 2.23
667 668 3.268330 GGACATTACCCGGAGTTTTCTC 58.732 50.000 0.73 0.00 45.49 2.87
668 669 2.640826 TGGACATTACCCGGAGTTTTCT 59.359 45.455 0.73 0.00 0.00 2.52
669 670 3.062122 TGGACATTACCCGGAGTTTTC 57.938 47.619 0.73 0.00 0.00 2.29
670 671 3.512219 TTGGACATTACCCGGAGTTTT 57.488 42.857 0.73 0.00 0.00 2.43
671 672 3.732048 ATTGGACATTACCCGGAGTTT 57.268 42.857 0.73 0.00 0.00 2.66
672 673 3.732048 AATTGGACATTACCCGGAGTT 57.268 42.857 0.73 0.00 0.00 3.01
673 674 3.118149 GGTAATTGGACATTACCCGGAGT 60.118 47.826 0.73 0.99 44.73 3.85
674 675 3.473625 GGTAATTGGACATTACCCGGAG 58.526 50.000 0.73 0.00 44.73 4.63
675 676 2.158928 CGGTAATTGGACATTACCCGGA 60.159 50.000 0.73 0.00 46.64 5.14
676 677 2.215196 CGGTAATTGGACATTACCCGG 58.785 52.381 15.19 0.00 46.64 5.73
677 678 2.158928 TCCGGTAATTGGACATTACCCG 60.159 50.000 15.19 10.51 46.64 5.28
678 679 3.473625 CTCCGGTAATTGGACATTACCC 58.526 50.000 15.19 2.27 46.64 3.69
679 680 3.473625 CCTCCGGTAATTGGACATTACC 58.526 50.000 12.12 12.12 46.16 2.85
680 681 3.135167 TCCCTCCGGTAATTGGACATTAC 59.865 47.826 0.00 0.00 34.63 1.89
681 682 3.135167 GTCCCTCCGGTAATTGGACATTA 59.865 47.826 18.75 0.00 43.92 1.90
682 683 2.092592 GTCCCTCCGGTAATTGGACATT 60.093 50.000 18.75 0.00 43.92 2.71
683 684 1.489230 GTCCCTCCGGTAATTGGACAT 59.511 52.381 18.75 0.00 43.92 3.06
684 685 0.906775 GTCCCTCCGGTAATTGGACA 59.093 55.000 18.75 0.00 43.92 4.02
685 686 1.138464 GAGTCCCTCCGGTAATTGGAC 59.862 57.143 17.06 17.06 44.64 4.02
686 687 1.007963 AGAGTCCCTCCGGTAATTGGA 59.992 52.381 0.00 0.00 0.00 3.53
687 688 1.413077 GAGAGTCCCTCCGGTAATTGG 59.587 57.143 0.00 0.00 35.87 3.16
688 689 2.108168 TGAGAGTCCCTCCGGTAATTG 58.892 52.381 0.00 0.00 41.25 2.32
689 690 2.108970 GTGAGAGTCCCTCCGGTAATT 58.891 52.381 0.00 0.00 41.25 1.40
690 691 1.688627 GGTGAGAGTCCCTCCGGTAAT 60.689 57.143 0.00 0.00 41.25 1.89
691 692 0.324091 GGTGAGAGTCCCTCCGGTAA 60.324 60.000 0.00 0.00 41.25 2.85
692 693 1.305623 GGTGAGAGTCCCTCCGGTA 59.694 63.158 0.00 0.00 41.25 4.02
693 694 2.037527 GGTGAGAGTCCCTCCGGT 59.962 66.667 0.00 0.00 41.25 5.28
694 695 2.760385 GGGTGAGAGTCCCTCCGG 60.760 72.222 0.00 0.00 41.25 5.14
695 696 2.760385 GGGGTGAGAGTCCCTCCG 60.760 72.222 0.96 0.00 44.07 4.63
696 697 2.760385 CGGGGTGAGAGTCCCTCC 60.760 72.222 0.96 0.00 44.07 4.30
697 698 2.760385 CCGGGGTGAGAGTCCCTC 60.760 72.222 0.00 0.00 44.07 4.30
698 699 4.400251 CCCGGGGTGAGAGTCCCT 62.400 72.222 14.71 0.00 44.07 4.20
699 700 2.308118 TATCCCGGGGTGAGAGTCCC 62.308 65.000 23.50 0.00 43.90 4.46
700 701 0.178929 ATATCCCGGGGTGAGAGTCC 60.179 60.000 23.50 0.00 0.00 3.85
701 702 1.203075 AGATATCCCGGGGTGAGAGTC 60.203 57.143 23.50 8.66 0.00 3.36
702 703 0.861155 AGATATCCCGGGGTGAGAGT 59.139 55.000 23.50 0.00 0.00 3.24
703 704 2.016905 AAGATATCCCGGGGTGAGAG 57.983 55.000 23.50 0.00 0.00 3.20
704 705 2.489528 AAAGATATCCCGGGGTGAGA 57.510 50.000 23.50 0.00 0.00 3.27
705 706 4.910458 ATTAAAGATATCCCGGGGTGAG 57.090 45.455 23.50 0.00 0.00 3.51
706 707 6.766997 TTTATTAAAGATATCCCGGGGTGA 57.233 37.500 23.50 6.49 0.00 4.02
707 708 7.668052 TCATTTTATTAAAGATATCCCGGGGTG 59.332 37.037 23.50 0.00 0.00 4.61
708 709 7.761608 TCATTTTATTAAAGATATCCCGGGGT 58.238 34.615 23.50 18.63 0.00 4.95
709 710 8.823220 ATCATTTTATTAAAGATATCCCGGGG 57.177 34.615 23.50 6.77 0.00 5.73
721 722 9.959693 TCCCCCAGGATAAATCATTTTATTAAA 57.040 29.630 0.00 0.00 37.98 1.52
742 743 4.519906 TTTGTTCTTCTATGGATCCCCC 57.480 45.455 9.90 0.00 0.00 5.40
743 744 6.368805 AGAATTTGTTCTTCTATGGATCCCC 58.631 40.000 9.90 0.00 31.27 4.81
744 745 9.225436 GATAGAATTTGTTCTTCTATGGATCCC 57.775 37.037 9.90 0.00 42.93 3.85
745 746 9.784531 TGATAGAATTTGTTCTTCTATGGATCC 57.215 33.333 4.20 4.20 42.93 3.36
786 787 9.194972 TGTATGCCATGGTTAATTAAATCAAGA 57.805 29.630 14.67 0.00 30.19 3.02
787 788 9.814899 TTGTATGCCATGGTTAATTAAATCAAG 57.185 29.630 14.67 0.00 30.19 3.02
789 790 9.814899 CTTTGTATGCCATGGTTAATTAAATCA 57.185 29.630 14.67 2.50 31.20 2.57
790 791 9.816354 ACTTTGTATGCCATGGTTAATTAAATC 57.184 29.630 14.67 0.00 0.00 2.17
794 795 9.469097 ACTTACTTTGTATGCCATGGTTAATTA 57.531 29.630 14.67 0.00 0.00 1.40
795 796 8.361169 ACTTACTTTGTATGCCATGGTTAATT 57.639 30.769 14.67 0.00 0.00 1.40
796 797 7.954666 ACTTACTTTGTATGCCATGGTTAAT 57.045 32.000 14.67 7.72 0.00 1.40
797 798 8.104566 AGTACTTACTTTGTATGCCATGGTTAA 58.895 33.333 14.67 0.00 31.13 2.01
798 799 7.626390 AGTACTTACTTTGTATGCCATGGTTA 58.374 34.615 14.67 3.18 31.13 2.85
799 800 6.481643 AGTACTTACTTTGTATGCCATGGTT 58.518 36.000 14.67 3.97 31.13 3.67
800 801 6.062258 AGTACTTACTTTGTATGCCATGGT 57.938 37.500 14.67 0.00 31.13 3.55
829 830 8.987890 GGCAACTGCTAATTCATTTAAAAAGAA 58.012 29.630 1.06 8.37 41.70 2.52
830 831 8.147058 TGGCAACTGCTAATTCATTTAAAAAGA 58.853 29.630 1.06 0.00 41.70 2.52
831 832 8.223100 GTGGCAACTGCTAATTCATTTAAAAAG 58.777 33.333 1.06 0.00 41.70 2.27
832 833 7.712639 TGTGGCAACTGCTAATTCATTTAAAAA 59.287 29.630 1.06 0.00 41.70 1.94
833 834 7.170658 GTGTGGCAACTGCTAATTCATTTAAAA 59.829 33.333 1.06 0.00 41.70 1.52
834 835 6.644592 GTGTGGCAACTGCTAATTCATTTAAA 59.355 34.615 1.06 0.00 41.70 1.52
835 836 6.015519 AGTGTGGCAACTGCTAATTCATTTAA 60.016 34.615 1.06 0.00 41.70 1.52
836 837 5.476599 AGTGTGGCAACTGCTAATTCATTTA 59.523 36.000 1.06 0.00 41.70 1.40
837 838 4.281688 AGTGTGGCAACTGCTAATTCATTT 59.718 37.500 1.06 0.00 41.70 2.32
838 839 3.828451 AGTGTGGCAACTGCTAATTCATT 59.172 39.130 1.06 0.00 41.70 2.57
839 840 3.192001 CAGTGTGGCAACTGCTAATTCAT 59.808 43.478 13.99 0.00 41.05 2.57
840 841 2.553602 CAGTGTGGCAACTGCTAATTCA 59.446 45.455 13.99 0.00 41.05 2.57
841 842 3.207474 CAGTGTGGCAACTGCTAATTC 57.793 47.619 13.99 0.00 41.05 2.17
854 855 1.001974 TGCTAGTTGCCTACAGTGTGG 59.998 52.381 5.88 2.03 42.00 4.17
855 856 2.455674 TGCTAGTTGCCTACAGTGTG 57.544 50.000 5.88 0.00 42.00 3.82
856 857 3.703001 AATGCTAGTTGCCTACAGTGT 57.297 42.857 0.00 0.00 42.00 3.55
857 858 4.216257 ACAAAATGCTAGTTGCCTACAGTG 59.784 41.667 0.00 0.00 42.00 3.66
858 859 4.398319 ACAAAATGCTAGTTGCCTACAGT 58.602 39.130 0.00 0.00 42.00 3.55
859 860 4.455533 TGACAAAATGCTAGTTGCCTACAG 59.544 41.667 0.00 0.00 42.00 2.74
860 861 4.393834 TGACAAAATGCTAGTTGCCTACA 58.606 39.130 0.00 0.00 42.00 2.74
861 862 5.335127 CATGACAAAATGCTAGTTGCCTAC 58.665 41.667 0.00 0.00 42.00 3.18
862 863 4.398988 CCATGACAAAATGCTAGTTGCCTA 59.601 41.667 0.00 0.00 42.00 3.93
966 967 0.606401 TTTTTCAGCTCTGCTCCCGG 60.606 55.000 0.00 0.00 36.40 5.73
1065 1070 3.797039 TGCGTCTTGAGATCCTAATTGG 58.203 45.455 0.00 0.00 37.10 3.16
1329 1334 3.116512 TGGCTGGATCTACTAATACCCCA 60.117 47.826 0.00 0.00 0.00 4.96
1599 1604 2.233922 CCACACCGAGAAGAGGTATGTT 59.766 50.000 0.00 0.00 40.59 2.71
1818 1823 1.366319 AGGAGGAGCAGGAACAACAT 58.634 50.000 0.00 0.00 0.00 2.71
1865 1870 1.254026 TGTGCGTGCTCTTACCTACT 58.746 50.000 0.00 0.00 0.00 2.57
1909 1914 2.131776 CTCGGTGGAGGAGTAGAAGT 57.868 55.000 0.00 0.00 36.61 3.01
2088 2096 2.345760 CCCATGTTCCAGCCTGCAC 61.346 63.158 0.00 0.00 0.00 4.57
2270 2286 4.686122 CGAAGTTGTAGGCCCCAATAGATT 60.686 45.833 8.55 2.99 0.00 2.40
2330 2346 3.245122 ACAAAATGAAGGTATGGGACGGT 60.245 43.478 0.00 0.00 0.00 4.83
2363 2379 3.045601 ACCGAGGAAGACAATGTTCAG 57.954 47.619 0.00 0.00 0.00 3.02
2533 2550 0.977395 AAAGCTCTCCACGCCTACTT 59.023 50.000 0.00 0.00 0.00 2.24
2921 2938 5.770663 AGTCACTGCTTATATGACGATAGGT 59.229 40.000 0.00 0.00 45.97 3.08
2934 2951 7.530010 GCATAATCTTTCAAAGTCACTGCTTA 58.470 34.615 0.00 0.00 0.00 3.09
3162 3179 1.227853 AAGGCTCGTTCCGTGCTTT 60.228 52.632 10.01 6.46 44.17 3.51
3283 3300 1.134310 TCGCTCCTATGTAGTGGTCGA 60.134 52.381 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.