Multiple sequence alignment - TraesCS2B01G282300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G282300 chr2B 100.000 5729 0 0 2249 7977 390811091 390805363 0.000000e+00 10580.0
1 TraesCS2B01G282300 chr2B 100.000 2039 0 0 1 2039 390813339 390811301 0.000000e+00 3766.0
2 TraesCS2B01G282300 chr2B 90.795 239 22 0 1 239 8253348 8253110 3.590000e-83 320.0
3 TraesCS2B01G282300 chr2B 95.349 43 0 2 7531 7572 390805308 390805349 5.170000e-07 67.6
4 TraesCS2B01G282300 chr2D 95.076 4915 130 21 2288 7142 322863887 322859025 0.000000e+00 7633.0
5 TraesCS2B01G282300 chr2D 93.430 1385 47 19 683 2039 322865281 322863913 0.000000e+00 2013.0
6 TraesCS2B01G282300 chr2D 88.285 717 33 20 7271 7977 322858822 322858147 0.000000e+00 811.0
7 TraesCS2B01G282300 chr2D 91.051 447 32 4 250 696 322865734 322865296 1.480000e-166 597.0
8 TraesCS2B01G282300 chr2D 96.512 86 2 1 7194 7278 322859006 322858921 3.000000e-29 141.0
9 TraesCS2B01G282300 chr2D 92.857 84 4 2 2342 2425 44530074 44530155 3.910000e-23 121.0
10 TraesCS2B01G282300 chr2D 95.349 43 0 2 7531 7572 322858092 322858133 5.170000e-07 67.6
11 TraesCS2B01G282300 chr2A 95.463 3901 93 23 3304 7155 408080553 408084418 0.000000e+00 6146.0
12 TraesCS2B01G282300 chr2A 91.518 1344 50 29 716 2016 408078249 408079571 0.000000e+00 1792.0
13 TraesCS2B01G282300 chr2A 92.908 987 45 7 2249 3230 408079589 408080555 0.000000e+00 1411.0
14 TraesCS2B01G282300 chr2A 97.108 415 12 0 7563 7977 408086917 408087331 0.000000e+00 701.0
15 TraesCS2B01G282300 chr2A 83.983 462 66 5 259 717 398856836 398857292 3.420000e-118 436.0
16 TraesCS2B01G282300 chr2A 83.766 462 67 5 259 717 398458737 398458281 1.590000e-116 431.0
17 TraesCS2B01G282300 chr2A 89.340 197 8 3 7271 7454 408084808 408085004 1.340000e-57 235.0
18 TraesCS2B01G282300 chr2A 89.286 140 3 6 7150 7278 408084446 408084584 1.780000e-36 165.0
19 TraesCS2B01G282300 chr2A 94.286 70 4 0 7462 7531 408086846 408086915 3.040000e-19 108.0
20 TraesCS2B01G282300 chr2A 97.297 37 0 1 7531 7566 408087386 408087350 2.400000e-05 62.1
21 TraesCS2B01G282300 chr5B 85.153 458 61 5 262 713 591580981 591580525 5.640000e-126 462.0
22 TraesCS2B01G282300 chr7A 83.700 454 70 4 250 701 121934436 121934887 7.400000e-115 425.0
23 TraesCS2B01G282300 chr7A 79.641 167 23 6 1849 2009 268888700 268888539 8.460000e-20 110.0
24 TraesCS2B01G282300 chr5D 83.514 461 64 9 258 712 61052077 61051623 3.440000e-113 420.0
25 TraesCS2B01G282300 chr5D 81.111 180 28 5 1846 2022 410181772 410181596 1.080000e-28 139.0
26 TraesCS2B01G282300 chr5D 73.778 225 45 12 2695 2912 319253482 319253265 8.580000e-10 76.8
27 TraesCS2B01G282300 chr3A 83.298 467 67 8 250 710 584952255 584952716 3.440000e-113 420.0
28 TraesCS2B01G282300 chr3A 91.837 49 4 0 1962 2010 52322649 52322697 1.440000e-07 69.4
29 TraesCS2B01G282300 chr1A 83.298 467 67 11 250 710 20970987 20971448 3.440000e-113 420.0
30 TraesCS2B01G282300 chr1B 83.262 466 66 10 250 710 520375647 520376105 1.240000e-112 418.0
31 TraesCS2B01G282300 chr7B 90.984 244 21 1 1 244 58434456 58434214 2.150000e-85 327.0
32 TraesCS2B01G282300 chr1D 91.561 237 20 0 1 237 401204807 401204571 2.150000e-85 327.0
33 TraesCS2B01G282300 chr3D 91.525 236 20 0 1 236 87391764 87391999 7.720000e-85 326.0
34 TraesCS2B01G282300 chr3D 79.839 124 19 5 1871 1989 520727675 520727797 1.430000e-12 86.1
35 TraesCS2B01G282300 chr3D 89.831 59 6 0 1962 2020 40229863 40229921 8.580000e-10 76.8
36 TraesCS2B01G282300 chr3B 89.723 253 24 2 1 251 30080710 30080458 9.990000e-84 322.0
37 TraesCS2B01G282300 chr3B 91.102 236 21 0 1 236 772187453 772187218 3.590000e-83 320.0
38 TraesCS2B01G282300 chr6D 91.102 236 21 0 1 236 94757209 94757444 3.590000e-83 320.0
39 TraesCS2B01G282300 chr6A 90.795 239 22 0 1 239 70420565 70420803 3.590000e-83 320.0
40 TraesCS2B01G282300 chr4D 89.879 247 21 4 1 245 96888145 96888389 1.670000e-81 315.0
41 TraesCS2B01G282300 chrUn 92.857 84 4 2 2342 2425 399660435 399660516 3.910000e-23 121.0
42 TraesCS2B01G282300 chr4A 82.609 138 17 6 2313 2445 579105528 579105393 1.820000e-21 115.0
43 TraesCS2B01G282300 chr5A 81.250 144 24 3 2287 2428 708531010 708531152 6.540000e-21 113.0
44 TraesCS2B01G282300 chr5A 78.443 167 33 1 1846 2009 521681544 521681378 1.090000e-18 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G282300 chr2B 390805363 390813339 7976 True 7173.000000 10580 100.000000 1 7977 2 chr2B.!!$R2 7976
1 TraesCS2B01G282300 chr2D 322858147 322865734 7587 True 2239.000000 7633 92.870800 250 7977 5 chr2D.!!$R1 7727
2 TraesCS2B01G282300 chr2A 408078249 408087331 9082 False 1508.285714 6146 92.844143 716 7977 7 chr2A.!!$F2 7261

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
316 317 1.086696 CTATGTGGTGGAAAGGTGCG 58.913 55.000 0.0 0.0 0.00 5.34 F
865 904 1.163309 ACCATCCCCTCTCCCACAA 59.837 57.895 0.0 0.0 0.00 3.33 F
2032 2105 0.167908 GTGTGTGTGTGTGTGTGTGG 59.832 55.000 0.0 0.0 0.00 4.17 F
2592 2667 0.389391 CACTCGCCTAATCCGTCCAT 59.611 55.000 0.0 0.0 0.00 3.41 F
3335 3417 1.523758 AAGTTTGCCCTCTACAAGCG 58.476 50.000 0.0 0.0 33.93 4.68 F
3646 3728 1.909302 CTGGGGCGAATACAGGGATAT 59.091 52.381 0.0 0.0 0.00 1.63 F
3954 4078 2.221169 TGTTGAGTGTGGAATCTGCAC 58.779 47.619 0.0 0.0 39.30 4.57 F
4998 5122 2.225242 TGGATGGTAGTTTTGCCCATGT 60.225 45.455 0.0 0.0 39.06 3.21 F
5375 5501 4.526262 AGAGGACTCCATCTCATTATTCCG 59.474 45.833 0.0 0.0 32.76 4.30 F
6606 6734 1.398960 GCATGTTTCTGACACTCACGC 60.399 52.381 0.0 0.0 42.04 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1236 1280 0.032813 CGGAGTGGGTAGGGTTAGGA 60.033 60.000 0.00 0.00 0.00 2.94 R
2718 2793 0.110486 TCTCCACCCAAAAGACTGCC 59.890 55.000 0.00 0.00 0.00 4.85 R
2858 2938 1.134491 AGGAACTTAGCGCCGCTATTT 60.134 47.619 20.79 15.69 41.01 1.40 R
4420 4544 1.482182 TCCACTGACCCGAATCATCAG 59.518 52.381 5.06 5.06 44.49 2.90 R
4942 5066 2.057922 ACAGGAACAGATGACCAAGGT 58.942 47.619 0.00 0.00 0.00 3.50 R
5375 5501 4.740268 TGAAGCATCAAAATCAGCATCAC 58.260 39.130 0.00 0.00 30.85 3.06 R
5863 5990 4.152647 TCACACATCCACACTAGAAGTCT 58.847 43.478 0.00 0.00 0.00 3.24 R
6606 6734 1.203052 AGCCAAAAATCTGCATGGACG 59.797 47.619 5.94 0.00 34.82 4.79 R
6845 6976 1.270550 CTCAAATGTTCCCACCTGCAC 59.729 52.381 0.00 0.00 0.00 4.57 R
7535 9806 0.320334 TGTCAGCGGTGTACATGGTG 60.320 55.000 15.22 18.71 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.782656 TTCCTACTTTGTTGGAGGGTC 57.217 47.619 1.74 0.00 38.51 4.46
21 22 2.696775 TCCTACTTTGTTGGAGGGTCA 58.303 47.619 0.00 0.00 33.01 4.02
22 23 3.050089 TCCTACTTTGTTGGAGGGTCAA 58.950 45.455 0.00 0.00 33.01 3.18
23 24 3.460340 TCCTACTTTGTTGGAGGGTCAAA 59.540 43.478 0.00 0.00 33.01 2.69
24 25 3.568430 CCTACTTTGTTGGAGGGTCAAAC 59.432 47.826 0.00 0.00 30.33 2.93
25 26 3.382083 ACTTTGTTGGAGGGTCAAACT 57.618 42.857 0.00 0.00 0.00 2.66
26 27 4.513406 ACTTTGTTGGAGGGTCAAACTA 57.487 40.909 0.00 0.00 0.00 2.24
27 28 5.061721 ACTTTGTTGGAGGGTCAAACTAT 57.938 39.130 0.00 0.00 0.00 2.12
28 29 5.070685 ACTTTGTTGGAGGGTCAAACTATC 58.929 41.667 0.00 0.00 0.00 2.08
29 30 4.993705 TTGTTGGAGGGTCAAACTATCT 57.006 40.909 0.00 0.00 0.00 1.98
30 31 4.553330 TGTTGGAGGGTCAAACTATCTC 57.447 45.455 0.00 0.00 0.00 2.75
31 32 3.907474 TGTTGGAGGGTCAAACTATCTCA 59.093 43.478 0.00 0.00 0.00 3.27
32 33 4.349636 TGTTGGAGGGTCAAACTATCTCAA 59.650 41.667 0.00 0.00 0.00 3.02
33 34 5.163141 TGTTGGAGGGTCAAACTATCTCAAA 60.163 40.000 0.00 0.00 0.00 2.69
34 35 5.165961 TGGAGGGTCAAACTATCTCAAAG 57.834 43.478 0.00 0.00 0.00 2.77
35 36 4.597507 TGGAGGGTCAAACTATCTCAAAGT 59.402 41.667 0.00 0.00 0.00 2.66
36 37 5.073144 TGGAGGGTCAAACTATCTCAAAGTT 59.927 40.000 0.00 0.00 38.82 2.66
37 38 6.004574 GGAGGGTCAAACTATCTCAAAGTTT 58.995 40.000 0.00 0.00 45.64 2.66
45 46 7.881775 AAACTATCTCAAAGTTTGACCAAGT 57.118 32.000 14.35 13.40 43.66 3.16
46 47 7.881775 AACTATCTCAAAGTTTGACCAAGTT 57.118 32.000 14.35 17.60 33.39 2.66
47 48 7.881775 ACTATCTCAAAGTTTGACCAAGTTT 57.118 32.000 14.35 1.42 38.38 2.66
48 49 8.974060 ACTATCTCAAAGTTTGACCAAGTTTA 57.026 30.769 14.35 2.36 36.07 2.01
49 50 9.574516 ACTATCTCAAAGTTTGACCAAGTTTAT 57.425 29.630 14.35 0.00 36.07 1.40
50 51 9.831737 CTATCTCAAAGTTTGACCAAGTTTATG 57.168 33.333 14.35 1.47 36.07 1.90
51 52 6.503524 TCTCAAAGTTTGACCAAGTTTATGC 58.496 36.000 14.35 0.00 36.07 3.14
52 53 6.096141 TCTCAAAGTTTGACCAAGTTTATGCA 59.904 34.615 14.35 0.00 36.07 3.96
53 54 6.634805 TCAAAGTTTGACCAAGTTTATGCAA 58.365 32.000 14.35 0.00 36.07 4.08
54 55 7.099764 TCAAAGTTTGACCAAGTTTATGCAAA 58.900 30.769 14.35 0.00 36.07 3.68
55 56 7.604164 TCAAAGTTTGACCAAGTTTATGCAAAA 59.396 29.630 14.35 0.00 36.07 2.44
56 57 7.913674 AAGTTTGACCAAGTTTATGCAAAAA 57.086 28.000 0.00 0.00 0.00 1.94
57 58 8.504812 AAGTTTGACCAAGTTTATGCAAAAAT 57.495 26.923 0.00 0.00 0.00 1.82
58 59 9.606631 AAGTTTGACCAAGTTTATGCAAAAATA 57.393 25.926 0.00 0.00 0.00 1.40
59 60 9.777297 AGTTTGACCAAGTTTATGCAAAAATAT 57.223 25.926 0.00 0.00 0.00 1.28
89 90 9.744468 AATGTTTGTGAAACCAAATAGTTCTAC 57.256 29.630 0.00 0.00 40.67 2.59
90 91 7.411274 TGTTTGTGAAACCAAATAGTTCTACG 58.589 34.615 0.00 0.00 40.67 3.51
91 92 7.280428 TGTTTGTGAAACCAAATAGTTCTACGA 59.720 33.333 0.00 0.00 40.67 3.43
92 93 7.972832 TTGTGAAACCAAATAGTTCTACGAT 57.027 32.000 0.00 0.00 34.36 3.73
93 94 7.359262 TGTGAAACCAAATAGTTCTACGATG 57.641 36.000 0.00 0.00 34.36 3.84
94 95 7.156000 TGTGAAACCAAATAGTTCTACGATGA 58.844 34.615 0.00 0.00 34.36 2.92
95 96 7.658167 TGTGAAACCAAATAGTTCTACGATGAA 59.342 33.333 0.00 0.00 34.36 2.57
96 97 8.500773 GTGAAACCAAATAGTTCTACGATGAAA 58.499 33.333 0.00 0.00 0.00 2.69
97 98 9.058174 TGAAACCAAATAGTTCTACGATGAAAA 57.942 29.630 0.00 0.00 0.00 2.29
203 204 8.445275 AAAAAGTTTGACTTTCCAACAAAGTT 57.555 26.923 6.53 0.00 46.78 2.66
204 205 7.420184 AAAGTTTGACTTTCCAACAAAGTTG 57.580 32.000 0.00 3.00 44.47 3.16
205 206 5.478407 AGTTTGACTTTCCAACAAAGTTGG 58.522 37.500 20.09 20.09 40.27 3.77
206 207 5.245075 AGTTTGACTTTCCAACAAAGTTGGA 59.755 36.000 23.64 23.64 46.08 3.53
214 215 4.850680 TCCAACAAAGTTGGAAGTACACT 58.149 39.130 24.83 0.00 44.90 3.55
215 216 4.879545 TCCAACAAAGTTGGAAGTACACTC 59.120 41.667 24.83 0.00 44.90 3.51
216 217 4.881850 CCAACAAAGTTGGAAGTACACTCT 59.118 41.667 21.24 0.00 42.06 3.24
217 218 5.357032 CCAACAAAGTTGGAAGTACACTCTT 59.643 40.000 21.24 0.00 42.06 2.85
218 219 6.127730 CCAACAAAGTTGGAAGTACACTCTTT 60.128 38.462 21.24 0.00 42.06 2.52
219 220 7.312899 CAACAAAGTTGGAAGTACACTCTTTT 58.687 34.615 2.05 0.00 0.00 2.27
220 221 8.455682 CAACAAAGTTGGAAGTACACTCTTTTA 58.544 33.333 2.05 0.00 0.00 1.52
221 222 8.570068 ACAAAGTTGGAAGTACACTCTTTTAA 57.430 30.769 0.00 0.00 0.00 1.52
222 223 8.674607 ACAAAGTTGGAAGTACACTCTTTTAAG 58.325 33.333 0.00 0.00 0.00 1.85
223 224 7.803279 AAGTTGGAAGTACACTCTTTTAAGG 57.197 36.000 0.00 0.00 0.00 2.69
224 225 7.133133 AGTTGGAAGTACACTCTTTTAAGGA 57.867 36.000 0.00 0.00 0.00 3.36
225 226 6.990939 AGTTGGAAGTACACTCTTTTAAGGAC 59.009 38.462 0.00 0.00 0.00 3.85
226 227 5.535333 TGGAAGTACACTCTTTTAAGGACG 58.465 41.667 0.00 0.00 0.00 4.79
227 228 4.928020 GGAAGTACACTCTTTTAAGGACGG 59.072 45.833 0.00 0.00 0.00 4.79
228 229 5.279156 GGAAGTACACTCTTTTAAGGACGGA 60.279 44.000 0.00 0.00 0.00 4.69
229 230 5.388408 AGTACACTCTTTTAAGGACGGAG 57.612 43.478 0.00 0.00 0.00 4.63
230 231 5.075493 AGTACACTCTTTTAAGGACGGAGA 58.925 41.667 0.00 0.00 0.00 3.71
231 232 4.522722 ACACTCTTTTAAGGACGGAGAG 57.477 45.455 0.00 0.00 39.69 3.20
232 233 4.150359 ACACTCTTTTAAGGACGGAGAGA 58.850 43.478 5.75 0.00 37.77 3.10
233 234 4.218852 ACACTCTTTTAAGGACGGAGAGAG 59.781 45.833 5.75 0.00 37.77 3.20
234 235 4.218852 CACTCTTTTAAGGACGGAGAGAGT 59.781 45.833 5.75 0.00 42.05 3.24
235 236 5.415077 CACTCTTTTAAGGACGGAGAGAGTA 59.585 44.000 5.75 0.00 40.05 2.59
236 237 6.095720 CACTCTTTTAAGGACGGAGAGAGTAT 59.904 42.308 5.75 0.00 40.05 2.12
237 238 7.282675 CACTCTTTTAAGGACGGAGAGAGTATA 59.717 40.741 5.75 0.00 40.05 1.47
238 239 8.000127 ACTCTTTTAAGGACGGAGAGAGTATAT 59.000 37.037 5.75 0.00 40.20 0.86
239 240 8.763984 TCTTTTAAGGACGGAGAGAGTATATT 57.236 34.615 0.00 0.00 0.00 1.28
240 241 9.198475 TCTTTTAAGGACGGAGAGAGTATATTT 57.802 33.333 0.00 0.00 0.00 1.40
246 247 8.754991 AGGACGGAGAGAGTATATTTATATGG 57.245 38.462 0.00 0.00 0.00 2.74
247 248 7.780745 AGGACGGAGAGAGTATATTTATATGGG 59.219 40.741 0.00 0.00 0.00 4.00
248 249 7.778853 GGACGGAGAGAGTATATTTATATGGGA 59.221 40.741 0.00 0.00 0.00 4.37
266 267 8.985315 ATATGGGAGCATGTATTATATTGGTG 57.015 34.615 0.00 0.00 0.00 4.17
308 309 6.007076 TGCTTTATTTTGTCTATGTGGTGGA 58.993 36.000 0.00 0.00 0.00 4.02
316 317 1.086696 CTATGTGGTGGAAAGGTGCG 58.913 55.000 0.00 0.00 0.00 5.34
318 319 4.025401 GTGGTGGAAAGGTGCGCG 62.025 66.667 0.00 0.00 0.00 6.86
329 330 3.688694 AAGGTGCGCGGGATTAATATA 57.311 42.857 8.83 0.00 0.00 0.86
330 331 3.906720 AGGTGCGCGGGATTAATATAT 57.093 42.857 8.83 0.00 0.00 0.86
331 332 4.216411 AGGTGCGCGGGATTAATATATT 57.784 40.909 8.83 2.97 0.00 1.28
332 333 4.585879 AGGTGCGCGGGATTAATATATTT 58.414 39.130 8.83 0.00 0.00 1.40
333 334 5.007682 AGGTGCGCGGGATTAATATATTTT 58.992 37.500 8.83 0.00 0.00 1.82
334 335 5.475564 AGGTGCGCGGGATTAATATATTTTT 59.524 36.000 8.83 0.00 0.00 1.94
335 336 6.655848 AGGTGCGCGGGATTAATATATTTTTA 59.344 34.615 8.83 0.00 0.00 1.52
336 337 7.338449 AGGTGCGCGGGATTAATATATTTTTAT 59.662 33.333 8.83 0.00 0.00 1.40
337 338 8.614346 GGTGCGCGGGATTAATATATTTTTATA 58.386 33.333 8.83 0.00 0.00 0.98
338 339 9.646336 GTGCGCGGGATTAATATATTTTTATAG 57.354 33.333 8.83 0.00 0.00 1.31
340 341 9.048446 GCGCGGGATTAATATATTTTTATAGGA 57.952 33.333 8.83 0.00 0.00 2.94
354 355 7.828508 TTTTTATAGGATGATTGCTGCTGAT 57.171 32.000 0.00 0.00 0.00 2.90
477 478 9.692325 AGAATTAAAAGAATTGCATAGGAGAGT 57.308 29.630 0.00 0.00 0.00 3.24
499 500 6.552008 AGTTCCTTGAGAAATTATTGACCCA 58.448 36.000 0.00 0.00 35.85 4.51
500 501 6.660949 AGTTCCTTGAGAAATTATTGACCCAG 59.339 38.462 0.00 0.00 35.85 4.45
526 527 6.833416 TCAAAATCGGATGAACCAATCCTAAT 59.167 34.615 0.00 0.00 43.53 1.73
552 553 4.675063 AGACCCAATTAATTGTGAGGGT 57.325 40.909 21.25 21.25 36.06 4.34
609 610 7.941431 AAGAATTGAATGAGAGAGCTTTGAT 57.059 32.000 0.00 0.00 0.00 2.57
624 625 4.764823 AGCTTTGATAAATTGTTGACCCGA 59.235 37.500 0.00 0.00 0.00 5.14
626 627 5.743872 GCTTTGATAAATTGTTGACCCGATC 59.256 40.000 0.00 0.00 0.00 3.69
675 676 2.821969 AGACCTCAATTGAATGTGTGCC 59.178 45.455 9.88 0.00 0.00 5.01
676 677 1.895131 ACCTCAATTGAATGTGTGCCC 59.105 47.619 9.88 0.00 0.00 5.36
713 742 7.202011 GGGAGCTTAGTGTTATAGAGGATTTGA 60.202 40.741 0.00 0.00 0.00 2.69
714 743 8.204836 GGAGCTTAGTGTTATAGAGGATTTGAA 58.795 37.037 0.00 0.00 0.00 2.69
865 904 1.163309 ACCATCCCCTCTCCCACAA 59.837 57.895 0.00 0.00 0.00 3.33
889 928 4.452733 CGCGACCACCCCCTCTTC 62.453 72.222 0.00 0.00 0.00 2.87
914 953 1.765230 TTTCTCTACCCTCTCCTCGC 58.235 55.000 0.00 0.00 0.00 5.03
1236 1280 2.588877 GCCATCATACGCGCCACT 60.589 61.111 5.73 0.00 0.00 4.00
1268 1312 2.178521 CTCCGACGAGGACAACGG 59.821 66.667 0.00 0.00 45.98 4.44
1428 1472 0.322277 TCCGCTACCTCGAGTTCTGT 60.322 55.000 12.31 4.45 0.00 3.41
1494 1538 0.173935 TACCTGTCCACAATACGGCG 59.826 55.000 4.80 4.80 0.00 6.46
1515 1559 4.394795 CGTCAAATAGTGCTTAGTTGTGC 58.605 43.478 8.21 0.00 38.25 4.57
1519 1563 2.074547 TAGTGCTTAGTTGTGCCGAC 57.925 50.000 0.00 0.00 0.00 4.79
1546 1591 7.624549 AGGATCAAAGTTGTCAGCTTTCTATA 58.375 34.615 11.34 0.00 34.32 1.31
1607 1652 0.251916 TATTTAGGGCTGCAGCGTGT 59.748 50.000 31.19 20.15 43.26 4.49
1642 1687 3.118371 AGAGGTTATGATTGGGGTTCGTC 60.118 47.826 0.00 0.00 0.00 4.20
1662 1708 3.064408 GTCATGCTTGATTTCATCGCTGA 59.936 43.478 5.49 0.00 33.56 4.26
1680 1726 3.124976 GCTGATGAGTTGCTCTTGTTCTC 59.875 47.826 0.00 0.00 0.00 2.87
1735 1782 1.668419 AATAGTTTAGCAGCGGCCTG 58.332 50.000 4.82 0.00 42.56 4.85
1802 1867 5.934402 AAAAACGAGGAAGAGGCTATCTA 57.066 39.130 0.00 0.00 37.23 1.98
1803 1868 5.934402 AAAACGAGGAAGAGGCTATCTAA 57.066 39.130 0.00 0.00 37.23 2.10
1804 1869 5.934402 AAACGAGGAAGAGGCTATCTAAA 57.066 39.130 0.00 0.00 37.23 1.85
1805 1870 4.922471 ACGAGGAAGAGGCTATCTAAAC 57.078 45.455 0.00 0.00 37.23 2.01
1806 1871 4.538738 ACGAGGAAGAGGCTATCTAAACT 58.461 43.478 0.00 0.00 37.23 2.66
1807 1872 5.692928 ACGAGGAAGAGGCTATCTAAACTA 58.307 41.667 0.00 0.00 37.23 2.24
1808 1873 6.127793 ACGAGGAAGAGGCTATCTAAACTAA 58.872 40.000 0.00 0.00 37.23 2.24
1809 1874 6.778559 ACGAGGAAGAGGCTATCTAAACTAAT 59.221 38.462 0.00 0.00 37.23 1.73
1810 1875 7.288158 ACGAGGAAGAGGCTATCTAAACTAATT 59.712 37.037 0.00 0.00 37.23 1.40
1811 1876 8.145122 CGAGGAAGAGGCTATCTAAACTAATTT 58.855 37.037 0.00 0.00 37.23 1.82
1812 1877 9.267084 GAGGAAGAGGCTATCTAAACTAATTTG 57.733 37.037 0.00 0.00 37.23 2.32
1813 1878 8.773216 AGGAAGAGGCTATCTAAACTAATTTGT 58.227 33.333 0.00 0.00 37.23 2.83
1814 1879 8.831550 GGAAGAGGCTATCTAAACTAATTTGTG 58.168 37.037 0.00 0.00 37.23 3.33
1951 2024 0.875040 CGCTGATCTGATTCGCTGCT 60.875 55.000 3.42 0.00 0.00 4.24
1992 2065 1.200519 TGGGTTTGTCCTAGCGCTAT 58.799 50.000 19.19 0.00 36.25 2.97
2032 2105 0.167908 GTGTGTGTGTGTGTGTGTGG 59.832 55.000 0.00 0.00 0.00 4.17
2036 2109 1.377856 TGTGTGTGTGTGTGGGTGG 60.378 57.895 0.00 0.00 0.00 4.61
2278 2351 4.776322 CCATCCCGCGTTGGCAGA 62.776 66.667 4.92 0.00 39.92 4.26
2295 2368 2.094675 CAGATTTTGGTCTTCCGCCAT 58.905 47.619 0.00 0.00 35.71 4.40
2310 2383 1.734477 CCATCTCCGCGCCTATTCG 60.734 63.158 0.00 0.00 0.00 3.34
2348 2422 4.114997 CCGTGTCCCATTTGCGCC 62.115 66.667 4.18 0.00 0.00 6.53
2431 2505 2.034558 GCTGCTTTAAGGTTTGTGAGCA 59.965 45.455 0.00 0.00 37.76 4.26
2510 2585 1.971505 TTGAGGGATGCAGCCTACCG 61.972 60.000 22.39 0.00 0.00 4.02
2579 2654 1.218316 CTTACTGGGACCCACTCGC 59.782 63.158 9.95 0.00 0.00 5.03
2587 2662 1.067582 GACCCACTCGCCTAATCCG 59.932 63.158 0.00 0.00 0.00 4.18
2592 2667 0.389391 CACTCGCCTAATCCGTCCAT 59.611 55.000 0.00 0.00 0.00 3.41
2618 2693 3.561143 CACCAGACTACCAGAGAGCTAT 58.439 50.000 0.00 0.00 0.00 2.97
2849 2929 5.537188 CTTCTTTTCTAGCACTCTGACTGT 58.463 41.667 0.00 0.00 0.00 3.55
2858 2938 4.454678 AGCACTCTGACTGTCAAATTTGA 58.545 39.130 16.91 16.91 34.20 2.69
2874 2954 2.018542 TTGAAATAGCGGCGCTAAGT 57.981 45.000 40.67 31.13 44.62 2.24
3126 3208 6.095440 TGGATTGGTGAGCTTAGAAATTTAGC 59.905 38.462 3.65 3.65 35.16 3.09
3214 3296 7.217200 GTCCAATTGCTATACATTAGACTGGA 58.783 38.462 0.00 0.00 0.00 3.86
3228 3310 4.843220 AGACTGGAAAATTCAACTGCTG 57.157 40.909 0.00 0.00 0.00 4.41
3238 3320 2.116125 AACTGCTGGTTCCAGGCC 59.884 61.111 18.81 0.00 34.65 5.19
3285 3367 4.023707 GGTTGAGTTCTGAAAGTGGTCATG 60.024 45.833 0.00 0.00 33.76 3.07
3335 3417 1.523758 AAGTTTGCCCTCTACAAGCG 58.476 50.000 0.00 0.00 33.93 4.68
3351 3433 2.335316 AGCGGGTAAACAGTTGTTGA 57.665 45.000 0.00 0.00 38.44 3.18
3386 3468 9.479549 AATTGTTTCCTGGTTAATGATGAGTAT 57.520 29.630 0.00 0.00 0.00 2.12
3513 3595 3.396260 TGGGTGAAGGTTTTCGTAGAG 57.604 47.619 0.00 0.00 38.43 2.43
3556 3638 3.637694 GCCAAAAGTTAAACCCCTGTACA 59.362 43.478 0.00 0.00 0.00 2.90
3646 3728 1.909302 CTGGGGCGAATACAGGGATAT 59.091 52.381 0.00 0.00 0.00 1.63
3804 3925 9.781834 GTGTTTCATTTCGGATTATCATGTAAA 57.218 29.630 0.00 0.00 0.00 2.01
3951 4075 3.559655 TCGTTTGTTGAGTGTGGAATCTG 59.440 43.478 0.00 0.00 0.00 2.90
3954 4078 2.221169 TGTTGAGTGTGGAATCTGCAC 58.779 47.619 0.00 0.00 39.30 4.57
4340 4464 7.840342 AGATATGTGGATTGAATATCTTCGC 57.160 36.000 0.00 0.00 39.49 4.70
4568 4692 4.199310 GGCAGCAAGGAGTGTTAATCATA 58.801 43.478 0.00 0.00 0.00 2.15
4909 5033 9.981114 GGAAGTAAATCTTTTTGAATTCCTTCA 57.019 29.630 2.27 0.00 36.73 3.02
4942 5066 8.574251 AAGGCACATACTTGTTGATTAATGTA 57.426 30.769 0.00 0.00 32.34 2.29
4998 5122 2.225242 TGGATGGTAGTTTTGCCCATGT 60.225 45.455 0.00 0.00 39.06 3.21
5137 5262 4.957327 CCCTATAGCTAGTAGCCCCTTAAG 59.043 50.000 18.65 7.81 43.77 1.85
5375 5501 4.526262 AGAGGACTCCATCTCATTATTCCG 59.474 45.833 0.00 0.00 32.76 4.30
5419 5545 6.045318 TCAGAATTCACTTCAGCTATACTGC 58.955 40.000 8.44 0.00 46.76 4.40
5785 5911 6.182627 TCTTGTGCTTTCCTAATGATCATGT 58.817 36.000 9.46 2.46 0.00 3.21
5797 5923 9.206690 TCCTAATGATCATGTCTCTCTAGTTTT 57.793 33.333 9.46 0.00 0.00 2.43
5821 5947 9.496873 TTTCAGAAATTTATTCCGTTGTCTCTA 57.503 29.630 0.00 0.00 0.00 2.43
5861 5988 8.648557 AAAAATTAACTTTTGCTCCTCTGTTC 57.351 30.769 0.00 0.00 37.14 3.18
5862 5989 7.588497 AAATTAACTTTTGCTCCTCTGTTCT 57.412 32.000 0.00 0.00 0.00 3.01
5863 5990 8.691661 AAATTAACTTTTGCTCCTCTGTTCTA 57.308 30.769 0.00 0.00 0.00 2.10
5864 5991 7.913674 ATTAACTTTTGCTCCTCTGTTCTAG 57.086 36.000 0.00 0.00 0.00 2.43
5865 5992 5.552870 AACTTTTGCTCCTCTGTTCTAGA 57.447 39.130 0.00 0.00 0.00 2.43
5866 5993 4.888917 ACTTTTGCTCCTCTGTTCTAGAC 58.111 43.478 0.00 0.00 0.00 2.59
5938 6065 5.997746 TCAACTTTAGTATGGCATATGCTCC 59.002 40.000 26.12 11.96 41.70 4.70
6182 6309 5.220710 AGCTTCAGTCTCTTCAGCTTTTA 57.779 39.130 0.00 0.00 37.56 1.52
6390 6518 9.950680 CATGCTATGAATTAACGGTTTTAGATT 57.049 29.630 0.00 0.00 0.00 2.40
6430 6558 8.264347 AGAGAGGTTCCTTCAGAAATATTTCTC 58.736 37.037 24.72 13.27 45.23 2.87
6496 6624 8.929827 TTCATTACAATTAACTCATGCATTGG 57.070 30.769 0.00 0.00 31.94 3.16
6606 6734 1.398960 GCATGTTTCTGACACTCACGC 60.399 52.381 0.00 0.00 42.04 5.34
6689 6820 2.877097 TGGAAGCTAACCTTGCATCA 57.123 45.000 10.52 0.00 45.45 3.07
6991 7132 2.557869 AGTTAGCAACCTGTCCCCATA 58.442 47.619 0.00 0.00 0.00 2.74
7081 7222 6.280643 ACTTGACATAAGTTTTGGCTTTTCC 58.719 36.000 0.68 0.00 0.00 3.13
7268 7460 5.010922 CAGCTAGAACAGAGGATTAGCATCT 59.989 44.000 0.00 0.00 39.27 2.90
7269 7461 5.243730 AGCTAGAACAGAGGATTAGCATCTC 59.756 44.000 0.00 0.00 39.27 2.75
7271 7463 4.293494 AGAACAGAGGATTAGCATCTCCA 58.707 43.478 1.91 0.00 34.98 3.86
7274 7466 5.643421 ACAGAGGATTAGCATCTCCAAAT 57.357 39.130 1.91 0.00 34.98 2.32
7276 7468 5.826737 ACAGAGGATTAGCATCTCCAAATTG 59.173 40.000 1.91 0.00 34.98 2.32
7277 7469 4.826183 AGAGGATTAGCATCTCCAAATTGC 59.174 41.667 1.91 0.00 30.45 3.56
7281 7704 5.751990 GGATTAGCATCTCCAAATTGCTTTG 59.248 40.000 1.62 0.00 43.94 2.77
7352 7788 4.499758 GCAGCTAGTACTGTTCGTATTCAC 59.500 45.833 5.39 0.00 39.96 3.18
7361 7798 6.354039 ACTGTTCGTATTCACTTTTTCGTT 57.646 33.333 0.00 0.00 0.00 3.85
7400 7837 5.060662 TCCTCTGTTCTGTTCGTATTCAG 57.939 43.478 0.00 0.00 0.00 3.02
7419 7856 3.082548 CAGTTCTTCTGACCCTACGAGA 58.917 50.000 0.00 0.00 46.27 4.04
7456 9727 0.525761 TCCGCAATTAAGCCTGCAAC 59.474 50.000 7.50 0.00 38.52 4.17
7459 9730 1.067635 CGCAATTAAGCCTGCAACCTT 60.068 47.619 7.50 4.22 38.52 3.50
7460 9731 2.610232 CGCAATTAAGCCTGCAACCTTT 60.610 45.455 4.10 0.00 38.52 3.11
7527 9798 1.621072 CCACCTGCTCCTACTCCTCTT 60.621 57.143 0.00 0.00 0.00 2.85
7530 9801 1.621072 CCTGCTCCTACTCCTCTTGGT 60.621 57.143 0.00 0.00 34.23 3.67
7531 9802 1.754226 CTGCTCCTACTCCTCTTGGTC 59.246 57.143 0.00 0.00 34.23 4.02
7532 9803 1.116308 GCTCCTACTCCTCTTGGTCC 58.884 60.000 0.00 0.00 34.23 4.46
7533 9804 1.619977 GCTCCTACTCCTCTTGGTCCA 60.620 57.143 0.00 0.00 34.23 4.02
7534 9805 2.383855 CTCCTACTCCTCTTGGTCCAG 58.616 57.143 0.00 0.00 34.23 3.86
7535 9806 0.827368 CCTACTCCTCTTGGTCCAGC 59.173 60.000 0.00 0.00 34.23 4.85
7536 9807 1.561643 CTACTCCTCTTGGTCCAGCA 58.438 55.000 0.00 0.00 34.23 4.41
7537 9808 1.205893 CTACTCCTCTTGGTCCAGCAC 59.794 57.143 0.00 0.00 34.23 4.40
7546 9817 2.854522 GGTCCAGCACCATGTACAC 58.145 57.895 0.00 0.00 45.98 2.90
7547 9818 0.676782 GGTCCAGCACCATGTACACC 60.677 60.000 0.00 0.00 45.98 4.16
7548 9819 1.019278 GTCCAGCACCATGTACACCG 61.019 60.000 0.00 0.00 0.00 4.94
7549 9820 2.398554 CCAGCACCATGTACACCGC 61.399 63.158 0.00 0.00 0.00 5.68
7550 9821 1.375908 CAGCACCATGTACACCGCT 60.376 57.895 0.00 0.61 0.00 5.52
7551 9822 1.375908 AGCACCATGTACACCGCTG 60.376 57.895 0.00 0.00 0.00 5.18
7552 9823 1.375396 GCACCATGTACACCGCTGA 60.375 57.895 0.00 0.00 0.00 4.26
7553 9824 1.635663 GCACCATGTACACCGCTGAC 61.636 60.000 0.00 0.00 0.00 3.51
7554 9825 0.320334 CACCATGTACACCGCTGACA 60.320 55.000 0.00 0.00 0.00 3.58
7555 9826 0.320421 ACCATGTACACCGCTGACAC 60.320 55.000 0.00 0.00 0.00 3.67
7556 9827 1.351430 CCATGTACACCGCTGACACG 61.351 60.000 0.00 0.00 0.00 4.49
7557 9828 0.666274 CATGTACACCGCTGACACGT 60.666 55.000 0.00 0.00 0.00 4.49
7558 9829 0.388134 ATGTACACCGCTGACACGTC 60.388 55.000 0.00 0.00 0.00 4.34
7559 9830 1.731969 GTACACCGCTGACACGTCC 60.732 63.158 0.00 0.00 0.00 4.79
7735 10006 1.800315 CTACTTCGGTGACACGGCG 60.800 63.158 4.80 4.80 0.00 6.46
7872 10143 3.399181 GGTGATCACCGAGGGGCA 61.399 66.667 28.52 0.00 42.29 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.050089 TGACCCTCCAACAAAGTAGGAA 58.950 45.455 0.00 0.00 0.00 3.36
1 2 2.696775 TGACCCTCCAACAAAGTAGGA 58.303 47.619 0.00 0.00 0.00 2.94
3 4 4.461198 AGTTTGACCCTCCAACAAAGTAG 58.539 43.478 0.00 0.00 36.05 2.57
4 5 4.513406 AGTTTGACCCTCCAACAAAGTA 57.487 40.909 0.00 0.00 36.05 2.24
5 6 3.382083 AGTTTGACCCTCCAACAAAGT 57.618 42.857 0.00 0.00 34.86 2.66
6 7 5.316987 AGATAGTTTGACCCTCCAACAAAG 58.683 41.667 0.00 0.00 34.86 2.77
7 8 5.163141 TGAGATAGTTTGACCCTCCAACAAA 60.163 40.000 0.00 0.00 0.00 2.83
8 9 4.349636 TGAGATAGTTTGACCCTCCAACAA 59.650 41.667 0.00 0.00 0.00 2.83
9 10 3.907474 TGAGATAGTTTGACCCTCCAACA 59.093 43.478 0.00 0.00 0.00 3.33
10 11 4.553330 TGAGATAGTTTGACCCTCCAAC 57.447 45.455 0.00 0.00 0.00 3.77
11 12 5.073144 ACTTTGAGATAGTTTGACCCTCCAA 59.927 40.000 0.00 0.00 0.00 3.53
12 13 4.597507 ACTTTGAGATAGTTTGACCCTCCA 59.402 41.667 0.00 0.00 0.00 3.86
13 14 5.167303 ACTTTGAGATAGTTTGACCCTCC 57.833 43.478 0.00 0.00 0.00 4.30
21 22 7.881775 ACTTGGTCAAACTTTGAGATAGTTT 57.118 32.000 4.36 0.00 44.38 2.66
22 23 7.881775 AACTTGGTCAAACTTTGAGATAGTT 57.118 32.000 4.36 10.51 41.01 2.24
23 24 7.881775 AAACTTGGTCAAACTTTGAGATAGT 57.118 32.000 4.36 5.71 41.01 2.12
24 25 9.831737 CATAAACTTGGTCAAACTTTGAGATAG 57.168 33.333 4.36 5.16 41.01 2.08
25 26 8.296713 GCATAAACTTGGTCAAACTTTGAGATA 58.703 33.333 4.36 0.00 41.01 1.98
26 27 7.147976 GCATAAACTTGGTCAAACTTTGAGAT 58.852 34.615 4.36 0.00 41.01 2.75
27 28 6.096141 TGCATAAACTTGGTCAAACTTTGAGA 59.904 34.615 4.36 0.00 41.01 3.27
28 29 6.272318 TGCATAAACTTGGTCAAACTTTGAG 58.728 36.000 4.36 0.00 41.01 3.02
29 30 6.214191 TGCATAAACTTGGTCAAACTTTGA 57.786 33.333 0.00 0.00 37.33 2.69
30 31 6.900568 TTGCATAAACTTGGTCAAACTTTG 57.099 33.333 0.00 0.00 0.00 2.77
31 32 7.913674 TTTTGCATAAACTTGGTCAAACTTT 57.086 28.000 0.00 0.00 0.00 2.66
32 33 7.913674 TTTTTGCATAAACTTGGTCAAACTT 57.086 28.000 0.00 0.00 0.00 2.66
33 34 9.777297 ATATTTTTGCATAAACTTGGTCAAACT 57.223 25.926 4.36 0.00 0.00 2.66
63 64 9.744468 GTAGAACTATTTGGTTTCACAAACATT 57.256 29.630 1.78 0.00 42.51 2.71
64 65 8.073768 CGTAGAACTATTTGGTTTCACAAACAT 58.926 33.333 1.78 0.00 42.51 2.71
65 66 7.280428 TCGTAGAACTATTTGGTTTCACAAACA 59.720 33.333 1.78 0.00 42.51 2.83
66 67 7.632721 TCGTAGAACTATTTGGTTTCACAAAC 58.367 34.615 0.00 0.00 42.51 2.93
67 68 7.789273 TCGTAGAACTATTTGGTTTCACAAA 57.211 32.000 0.00 0.00 43.69 2.83
68 69 7.658167 TCATCGTAGAACTATTTGGTTTCACAA 59.342 33.333 0.00 0.00 43.58 3.33
69 70 7.156000 TCATCGTAGAACTATTTGGTTTCACA 58.844 34.615 0.00 0.00 43.58 3.58
70 71 7.591006 TCATCGTAGAACTATTTGGTTTCAC 57.409 36.000 0.00 0.00 43.58 3.18
71 72 8.610248 TTTCATCGTAGAACTATTTGGTTTCA 57.390 30.769 0.00 0.00 43.58 2.69
181 182 5.931724 CCAACTTTGTTGGAAAGTCAAACTT 59.068 36.000 21.06 0.00 42.06 2.66
182 183 5.245075 TCCAACTTTGTTGGAAAGTCAAACT 59.755 36.000 24.52 0.00 44.90 2.66
183 184 5.474825 TCCAACTTTGTTGGAAAGTCAAAC 58.525 37.500 24.52 0.00 44.90 2.93
184 185 5.730296 TCCAACTTTGTTGGAAAGTCAAA 57.270 34.783 24.52 4.81 44.90 2.69
192 193 4.850680 AGTGTACTTCCAACTTTGTTGGA 58.149 39.130 23.38 23.38 46.08 3.53
193 194 4.881850 AGAGTGTACTTCCAACTTTGTTGG 59.118 41.667 19.97 19.97 40.87 3.77
194 195 6.436843 AAGAGTGTACTTCCAACTTTGTTG 57.563 37.500 3.69 3.69 0.00 3.33
195 196 7.462571 AAAAGAGTGTACTTCCAACTTTGTT 57.537 32.000 0.00 0.00 0.00 2.83
196 197 8.570068 TTAAAAGAGTGTACTTCCAACTTTGT 57.430 30.769 0.00 0.00 0.00 2.83
197 198 8.129211 CCTTAAAAGAGTGTACTTCCAACTTTG 58.871 37.037 0.00 0.00 0.00 2.77
198 199 8.050930 TCCTTAAAAGAGTGTACTTCCAACTTT 58.949 33.333 0.00 0.00 0.00 2.66
199 200 7.498239 GTCCTTAAAAGAGTGTACTTCCAACTT 59.502 37.037 0.00 0.00 0.00 2.66
200 201 6.990939 GTCCTTAAAAGAGTGTACTTCCAACT 59.009 38.462 0.00 0.00 0.00 3.16
201 202 6.073927 CGTCCTTAAAAGAGTGTACTTCCAAC 60.074 42.308 0.00 0.00 0.00 3.77
202 203 5.987347 CGTCCTTAAAAGAGTGTACTTCCAA 59.013 40.000 0.00 0.00 0.00 3.53
203 204 5.510179 CCGTCCTTAAAAGAGTGTACTTCCA 60.510 44.000 0.00 0.00 0.00 3.53
204 205 4.928020 CCGTCCTTAAAAGAGTGTACTTCC 59.072 45.833 0.00 0.00 0.00 3.46
205 206 5.776744 TCCGTCCTTAAAAGAGTGTACTTC 58.223 41.667 0.00 0.00 0.00 3.01
206 207 5.537674 TCTCCGTCCTTAAAAGAGTGTACTT 59.462 40.000 0.00 0.00 0.00 2.24
207 208 5.075493 TCTCCGTCCTTAAAAGAGTGTACT 58.925 41.667 0.00 0.00 0.00 2.73
208 209 5.182760 TCTCTCCGTCCTTAAAAGAGTGTAC 59.817 44.000 0.00 0.00 35.91 2.90
209 210 5.319453 TCTCTCCGTCCTTAAAAGAGTGTA 58.681 41.667 0.00 0.00 35.91 2.90
210 211 4.150359 TCTCTCCGTCCTTAAAAGAGTGT 58.850 43.478 0.00 0.00 35.91 3.55
211 212 4.218852 ACTCTCTCCGTCCTTAAAAGAGTG 59.781 45.833 0.00 0.00 40.20 3.51
212 213 4.409187 ACTCTCTCCGTCCTTAAAAGAGT 58.591 43.478 0.00 0.00 37.70 3.24
213 214 6.702716 ATACTCTCTCCGTCCTTAAAAGAG 57.297 41.667 0.00 0.00 35.80 2.85
214 215 8.763984 AATATACTCTCTCCGTCCTTAAAAGA 57.236 34.615 0.00 0.00 0.00 2.52
220 221 9.191479 CCATATAAATATACTCTCTCCGTCCTT 57.809 37.037 0.00 0.00 0.00 3.36
221 222 7.780745 CCCATATAAATATACTCTCTCCGTCCT 59.219 40.741 0.00 0.00 0.00 3.85
222 223 7.778853 TCCCATATAAATATACTCTCTCCGTCC 59.221 40.741 0.00 0.00 0.00 4.79
223 224 8.749026 TCCCATATAAATATACTCTCTCCGTC 57.251 38.462 0.00 0.00 0.00 4.79
224 225 7.285858 GCTCCCATATAAATATACTCTCTCCGT 59.714 40.741 0.00 0.00 0.00 4.69
225 226 7.285629 TGCTCCCATATAAATATACTCTCTCCG 59.714 40.741 0.00 0.00 0.00 4.63
226 227 8.540507 TGCTCCCATATAAATATACTCTCTCC 57.459 38.462 0.00 0.00 0.00 3.71
227 228 9.979578 CATGCTCCCATATAAATATACTCTCTC 57.020 37.037 0.00 0.00 0.00 3.20
228 229 9.499369 ACATGCTCCCATATAAATATACTCTCT 57.501 33.333 0.00 0.00 0.00 3.10
241 242 8.560039 ACACCAATATAATACATGCTCCCATAT 58.440 33.333 0.00 0.00 0.00 1.78
242 243 7.927788 ACACCAATATAATACATGCTCCCATA 58.072 34.615 0.00 0.00 0.00 2.74
243 244 6.793478 ACACCAATATAATACATGCTCCCAT 58.207 36.000 0.00 0.00 0.00 4.00
244 245 6.199557 ACACCAATATAATACATGCTCCCA 57.800 37.500 0.00 0.00 0.00 4.37
245 246 7.663905 TGTAACACCAATATAATACATGCTCCC 59.336 37.037 0.00 0.00 0.00 4.30
246 247 8.615878 TGTAACACCAATATAATACATGCTCC 57.384 34.615 0.00 0.00 0.00 4.70
308 309 2.335316 TATTAATCCCGCGCACCTTT 57.665 45.000 8.75 0.00 0.00 3.11
329 330 7.828508 TCAGCAGCAATCATCCTATAAAAAT 57.171 32.000 0.00 0.00 0.00 1.82
330 331 7.828508 ATCAGCAGCAATCATCCTATAAAAA 57.171 32.000 0.00 0.00 0.00 1.94
331 332 7.503230 TCAATCAGCAGCAATCATCCTATAAAA 59.497 33.333 0.00 0.00 0.00 1.52
332 333 6.999871 TCAATCAGCAGCAATCATCCTATAAA 59.000 34.615 0.00 0.00 0.00 1.40
333 334 6.536447 TCAATCAGCAGCAATCATCCTATAA 58.464 36.000 0.00 0.00 0.00 0.98
334 335 6.117975 TCAATCAGCAGCAATCATCCTATA 57.882 37.500 0.00 0.00 0.00 1.31
335 336 4.981812 TCAATCAGCAGCAATCATCCTAT 58.018 39.130 0.00 0.00 0.00 2.57
336 337 4.426736 TCAATCAGCAGCAATCATCCTA 57.573 40.909 0.00 0.00 0.00 2.94
337 338 3.292492 TCAATCAGCAGCAATCATCCT 57.708 42.857 0.00 0.00 0.00 3.24
338 339 4.585955 AATCAATCAGCAGCAATCATCC 57.414 40.909 0.00 0.00 0.00 3.51
340 341 5.592104 TCAAATCAATCAGCAGCAATCAT 57.408 34.783 0.00 0.00 0.00 2.45
341 342 5.394224 TTCAAATCAATCAGCAGCAATCA 57.606 34.783 0.00 0.00 0.00 2.57
342 343 6.715344 TTTTCAAATCAATCAGCAGCAATC 57.285 33.333 0.00 0.00 0.00 2.67
343 344 7.681939 ATTTTTCAAATCAATCAGCAGCAAT 57.318 28.000 0.00 0.00 0.00 3.56
344 345 7.499321 AATTTTTCAAATCAATCAGCAGCAA 57.501 28.000 0.00 0.00 0.00 3.91
345 346 8.780846 ATAATTTTTCAAATCAATCAGCAGCA 57.219 26.923 0.00 0.00 0.00 4.41
346 347 9.485591 CAATAATTTTTCAAATCAATCAGCAGC 57.514 29.630 0.00 0.00 0.00 5.25
347 348 9.982291 CCAATAATTTTTCAAATCAATCAGCAG 57.018 29.630 0.00 0.00 0.00 4.24
412 413 6.889301 TTGAAGCTCTTTCATTCAGTTCAT 57.111 33.333 0.00 0.00 44.90 2.57
414 415 8.585189 AATTTTGAAGCTCTTTCATTCAGTTC 57.415 30.769 0.00 0.00 44.90 3.01
455 456 8.281212 GGAACTCTCCTATGCAATTCTTTTAA 57.719 34.615 0.00 0.00 38.88 1.52
477 478 6.552008 ACTGGGTCAATAATTTCTCAAGGAA 58.448 36.000 0.00 0.00 0.00 3.36
479 480 5.945784 TGACTGGGTCAATAATTTCTCAAGG 59.054 40.000 0.00 0.00 39.78 3.61
499 500 4.399303 GGATTGGTTCATCCGATTTTGACT 59.601 41.667 0.00 0.00 40.23 3.41
500 501 4.399303 AGGATTGGTTCATCCGATTTTGAC 59.601 41.667 0.00 0.00 40.23 3.18
526 527 6.014669 CCCTCACAATTAATTGGGTCTTCAAA 60.015 38.462 25.80 7.74 41.80 2.69
583 584 8.174733 TCAAAGCTCTCTCATTCAATTCTTTT 57.825 30.769 0.00 0.00 0.00 2.27
609 610 6.318628 CGATTTTGATCGGGTCAACAATTTA 58.681 36.000 2.53 0.00 46.14 1.40
624 625 9.889128 ATTAAAATTTGGTCATCCGATTTTGAT 57.111 25.926 15.01 11.74 39.75 2.57
626 627 9.757859 CAATTAAAATTTGGTCATCCGATTTTG 57.242 29.630 15.01 0.00 39.75 2.44
675 676 6.473758 ACACTAAGCTCCCTAGTTTTAAAGG 58.526 40.000 0.00 0.00 0.00 3.11
676 677 7.981102 AACACTAAGCTCCCTAGTTTTAAAG 57.019 36.000 0.00 0.00 0.00 1.85
737 767 8.405531 CACTTGAGGTCATTCTTGTTCTAAAAA 58.594 33.333 0.00 0.00 0.00 1.94
887 926 4.773149 GGAGAGGGTAGAGAAAAGAGTGAA 59.227 45.833 0.00 0.00 0.00 3.18
888 927 4.044825 AGGAGAGGGTAGAGAAAAGAGTGA 59.955 45.833 0.00 0.00 0.00 3.41
889 928 4.349365 AGGAGAGGGTAGAGAAAAGAGTG 58.651 47.826 0.00 0.00 0.00 3.51
924 963 4.890306 GGAGGGGAGGGGAGAGCC 62.890 77.778 0.00 0.00 0.00 4.70
1236 1280 0.032813 CGGAGTGGGTAGGGTTAGGA 60.033 60.000 0.00 0.00 0.00 2.94
1268 1312 1.573829 TTTGCCATCCTCGTTCGTGC 61.574 55.000 0.00 0.00 0.00 5.34
1494 1538 4.669197 CGGCACAACTAAGCACTATTTGAC 60.669 45.833 3.83 0.00 0.00 3.18
1515 1559 1.993370 GACAACTTTGATCCTCGTCGG 59.007 52.381 0.00 0.00 0.00 4.79
1519 1563 2.693069 AGCTGACAACTTTGATCCTCG 58.307 47.619 0.00 0.00 0.00 4.63
1546 1591 0.820226 TGCTGCACGAAGAGCTCTAT 59.180 50.000 18.59 7.42 46.38 1.98
1607 1652 0.541392 AACCTCTCACTGTGTGTGCA 59.459 50.000 7.79 0.00 45.81 4.57
1613 1658 4.194640 CCCAATCATAACCTCTCACTGTG 58.805 47.826 0.17 0.17 0.00 3.66
1622 1667 2.574369 TGACGAACCCCAATCATAACCT 59.426 45.455 0.00 0.00 0.00 3.50
1642 1687 3.685836 TCAGCGATGAAATCAAGCATG 57.314 42.857 0.00 0.00 45.97 4.06
1662 1708 3.006323 AGTCGAGAACAAGAGCAACTCAT 59.994 43.478 0.00 0.00 32.06 2.90
1680 1726 5.840940 AATACCTCGAACTTTTCAAGTCG 57.159 39.130 0.00 0.00 41.91 4.18
1695 1741 4.861102 TTAGCCCGCTACTTAATACCTC 57.139 45.455 0.00 0.00 0.00 3.85
1735 1782 0.903454 TTCCCCTAGCCCGCTATAGC 60.903 60.000 15.09 15.09 37.78 2.97
1737 1784 1.361543 AGATTCCCCTAGCCCGCTATA 59.638 52.381 0.00 0.00 0.00 1.31
1738 1785 0.117340 AGATTCCCCTAGCCCGCTAT 59.883 55.000 0.00 0.00 0.00 2.97
1739 1786 0.781920 TAGATTCCCCTAGCCCGCTA 59.218 55.000 0.00 0.00 0.00 4.26
1742 1789 2.047830 AGTTTAGATTCCCCTAGCCCG 58.952 52.381 0.00 0.00 0.00 6.13
1743 1790 5.095097 AGATAGTTTAGATTCCCCTAGCCC 58.905 45.833 0.00 0.00 0.00 5.19
1786 1851 9.267084 CAAATTAGTTTAGATAGCCTCTTCCTC 57.733 37.037 0.00 0.00 35.28 3.71
1787 1852 8.773216 ACAAATTAGTTTAGATAGCCTCTTCCT 58.227 33.333 0.00 0.00 35.28 3.36
1789 1854 8.831550 CCACAAATTAGTTTAGATAGCCTCTTC 58.168 37.037 0.00 0.00 35.28 2.87
1790 1855 7.775561 CCCACAAATTAGTTTAGATAGCCTCTT 59.224 37.037 0.00 0.00 35.28 2.85
1792 1857 7.280356 TCCCACAAATTAGTTTAGATAGCCTC 58.720 38.462 0.00 0.00 0.00 4.70
1794 1859 7.875327 TTCCCACAAATTAGTTTAGATAGCC 57.125 36.000 0.00 0.00 0.00 3.93
1795 1860 9.736023 CATTTCCCACAAATTAGTTTAGATAGC 57.264 33.333 0.00 0.00 0.00 2.97
1798 1863 8.971073 CCTCATTTCCCACAAATTAGTTTAGAT 58.029 33.333 0.00 0.00 0.00 1.98
1802 1867 7.610580 TTCCTCATTTCCCACAAATTAGTTT 57.389 32.000 0.00 0.00 0.00 2.66
1803 1868 7.797121 ATTCCTCATTTCCCACAAATTAGTT 57.203 32.000 0.00 0.00 0.00 2.24
1804 1869 7.797121 AATTCCTCATTTCCCACAAATTAGT 57.203 32.000 0.00 0.00 0.00 2.24
1805 1870 7.064966 GCAAATTCCTCATTTCCCACAAATTAG 59.935 37.037 0.00 0.00 32.24 1.73
1806 1871 6.878389 GCAAATTCCTCATTTCCCACAAATTA 59.122 34.615 0.00 0.00 32.24 1.40
1807 1872 5.706833 GCAAATTCCTCATTTCCCACAAATT 59.293 36.000 0.00 0.00 32.24 1.82
1808 1873 5.221884 TGCAAATTCCTCATTTCCCACAAAT 60.222 36.000 0.00 0.00 32.24 2.32
1809 1874 4.102210 TGCAAATTCCTCATTTCCCACAAA 59.898 37.500 0.00 0.00 32.24 2.83
1810 1875 3.645212 TGCAAATTCCTCATTTCCCACAA 59.355 39.130 0.00 0.00 32.24 3.33
1811 1876 3.006752 GTGCAAATTCCTCATTTCCCACA 59.993 43.478 0.00 0.00 35.78 4.17
1812 1877 3.006752 TGTGCAAATTCCTCATTTCCCAC 59.993 43.478 0.00 0.00 36.02 4.61
1813 1878 3.237746 TGTGCAAATTCCTCATTTCCCA 58.762 40.909 0.00 0.00 32.24 4.37
1814 1879 3.959535 TGTGCAAATTCCTCATTTCCC 57.040 42.857 0.00 0.00 32.24 3.97
1951 2024 0.535780 CTCAGTTCTTGGCACCAGCA 60.536 55.000 0.00 0.00 44.61 4.41
1992 2065 2.683362 CACACATCTACTCGCTCACCTA 59.317 50.000 0.00 0.00 0.00 3.08
2006 2079 1.737236 ACACACACACACACACACATC 59.263 47.619 0.00 0.00 0.00 3.06
2272 2345 1.533625 CGGAAGACCAAAATCTGCCA 58.466 50.000 0.76 0.00 44.11 4.92
2278 2351 2.369394 GAGATGGCGGAAGACCAAAAT 58.631 47.619 0.00 0.00 39.67 1.82
2295 2368 2.719979 GACGAATAGGCGCGGAGA 59.280 61.111 8.83 0.00 33.86 3.71
2340 2413 3.127533 GCTGAGTCGGGCGCAAAT 61.128 61.111 10.83 0.00 0.00 2.32
2348 2422 2.718731 CGAGCTAGGCTGAGTCGG 59.281 66.667 0.00 0.00 39.88 4.79
2543 2618 6.307800 CCAGTAAGAGTGTGTTTGTTGTTTTG 59.692 38.462 0.00 0.00 0.00 2.44
2579 2654 2.146342 GTGCATCATGGACGGATTAGG 58.854 52.381 0.00 0.00 0.00 2.69
2587 2662 2.555199 GTAGTCTGGTGCATCATGGAC 58.445 52.381 10.58 10.58 38.03 4.02
2592 2667 1.827344 CTCTGGTAGTCTGGTGCATCA 59.173 52.381 0.00 0.00 0.00 3.07
2676 2751 1.580845 GCGGCTGCTTCAGTGAACAT 61.581 55.000 11.21 0.00 38.39 2.71
2718 2793 0.110486 TCTCCACCCAAAAGACTGCC 59.890 55.000 0.00 0.00 0.00 4.85
2765 2841 5.221303 CCATAAACCAGCACCAATGATTAGG 60.221 44.000 0.00 0.00 0.00 2.69
2849 2929 2.163412 AGCGCCGCTATTTCAAATTTGA 59.837 40.909 11.29 16.91 36.99 2.69
2858 2938 1.134491 AGGAACTTAGCGCCGCTATTT 60.134 47.619 20.79 15.69 41.01 1.40
2874 2954 5.450818 AAATACCATAGCAGTTGGAGGAA 57.549 39.130 6.60 0.00 37.69 3.36
2967 3047 5.522460 GCACCTGTATAGCATTTTAGACGAA 59.478 40.000 0.00 0.00 0.00 3.85
3214 3296 3.070015 CCTGGAACCAGCAGTTGAATTTT 59.930 43.478 14.66 0.00 42.35 1.82
3228 3310 2.757099 CCATGCAGGCCTGGAACC 60.757 66.667 31.97 16.04 34.28 3.62
3238 3320 4.365723 GCACCTTAATCAATTCCATGCAG 58.634 43.478 0.00 0.00 0.00 4.41
3245 3327 3.442273 TCAACCGGCACCTTAATCAATTC 59.558 43.478 0.00 0.00 0.00 2.17
3285 3367 4.016444 TGCCATTCCAAATCAGTAAGGTC 58.984 43.478 0.00 0.00 0.00 3.85
3299 3381 5.979517 GCAAACTTTCAGTATATGCCATTCC 59.020 40.000 0.00 0.00 30.81 3.01
3335 3417 2.029380 GGGCATCAACAACTGTTTACCC 60.029 50.000 0.00 0.00 35.83 3.69
3351 3433 4.103342 ACCAGGAAACAATTATTGGGCAT 58.897 39.130 9.88 0.00 34.12 4.40
3386 3468 1.146774 TGTTTGGGAGGCAAATCAGGA 59.853 47.619 0.00 0.00 0.00 3.86
3513 3595 3.119424 GCTCAAGATATCCCTACGCCTAC 60.119 52.174 0.00 0.00 0.00 3.18
3556 3638 5.249393 CCACCTCCATAATCCATAGCTAGTT 59.751 44.000 0.00 0.00 0.00 2.24
3715 3822 3.760151 CCAGAAATCCTCAAACTGATGCA 59.240 43.478 0.00 0.00 0.00 3.96
3804 3925 7.336931 CCTCATAGTGCCACAAAACTTATAAGT 59.663 37.037 12.50 12.50 42.04 2.24
3822 3946 3.309296 CCCTACATGGTGACCTCATAGT 58.691 50.000 2.11 0.00 0.00 2.12
3951 4075 9.902196 GATAGACTCTAACCTAAATCTTAGTGC 57.098 37.037 0.00 0.00 0.00 4.40
3996 4120 5.043248 AGGCACAAAAGAACAAGAAAATCG 58.957 37.500 0.00 0.00 0.00 3.34
4160 4284 4.119136 GCGCCATAACCTGCAAATAAAAT 58.881 39.130 0.00 0.00 0.00 1.82
4340 4464 5.353394 TGTTAAGGTAGGTAAGCTCCATG 57.647 43.478 0.00 0.00 33.87 3.66
4420 4544 1.482182 TCCACTGACCCGAATCATCAG 59.518 52.381 5.06 5.06 44.49 2.90
4568 4692 6.238731 CCATAGCACCATGATAAATTGTTCGT 60.239 38.462 0.00 0.00 0.00 3.85
4909 5033 6.265196 TCAACAAGTATGTGCCTTTTTCATCT 59.735 34.615 0.00 0.00 40.46 2.90
4942 5066 2.057922 ACAGGAACAGATGACCAAGGT 58.942 47.619 0.00 0.00 0.00 3.50
4998 5122 7.877612 TGAACATCAACTTAGCACTAATCAAGA 59.122 33.333 0.00 0.00 0.00 3.02
5212 5338 8.864069 ACGTTCAAAATATTGTGTTCAATGAA 57.136 26.923 5.52 0.00 43.17 2.57
5375 5501 4.740268 TGAAGCATCAAAATCAGCATCAC 58.260 39.130 0.00 0.00 30.85 3.06
5419 5545 6.842282 CACGATTCAGCATTTTCAAAAACTTG 59.158 34.615 0.00 0.00 0.00 3.16
5797 5923 8.528643 TCTAGAGACAACGGAATAAATTTCTGA 58.471 33.333 0.00 0.00 0.00 3.27
5859 5986 6.010850 ACACATCCACACTAGAAGTCTAGAA 58.989 40.000 19.82 3.08 46.80 2.10
5860 5987 5.416013 CACACATCCACACTAGAAGTCTAGA 59.584 44.000 19.82 0.00 46.80 2.43
5862 5989 5.321927 TCACACATCCACACTAGAAGTCTA 58.678 41.667 0.00 0.00 0.00 2.59
5863 5990 4.152647 TCACACATCCACACTAGAAGTCT 58.847 43.478 0.00 0.00 0.00 3.24
5864 5991 4.521130 TCACACATCCACACTAGAAGTC 57.479 45.455 0.00 0.00 0.00 3.01
5865 5992 5.489792 AATCACACATCCACACTAGAAGT 57.510 39.130 0.00 0.00 0.00 3.01
5866 5993 6.481313 CCATAATCACACATCCACACTAGAAG 59.519 42.308 0.00 0.00 0.00 2.85
6182 6309 2.214376 TTCTGCAAAACCCATCCGAT 57.786 45.000 0.00 0.00 0.00 4.18
6390 6518 4.623932 ACCTCTCTGCACTTATGACAAA 57.376 40.909 0.00 0.00 0.00 2.83
6496 6624 7.399245 ACTAAACTCATCTCTGTTAGACCTC 57.601 40.000 0.00 0.00 36.93 3.85
6606 6734 1.203052 AGCCAAAAATCTGCATGGACG 59.797 47.619 5.94 0.00 34.82 4.79
6687 6818 2.426738 GGCCATCATTGTTTCCGATTGA 59.573 45.455 0.00 0.00 0.00 2.57
6688 6819 2.428171 AGGCCATCATTGTTTCCGATTG 59.572 45.455 5.01 0.00 0.00 2.67
6689 6820 2.738743 AGGCCATCATTGTTTCCGATT 58.261 42.857 5.01 0.00 0.00 3.34
6734 6865 2.367894 TGGATAGAGGCTGATTGCTGAG 59.632 50.000 0.00 0.00 42.39 3.35
6845 6976 1.270550 CTCAAATGTTCCCACCTGCAC 59.729 52.381 0.00 0.00 0.00 4.57
7192 7375 1.279271 ACAGAAACTGCCCTTATCGCT 59.721 47.619 0.00 0.00 34.37 4.93
7268 7460 4.869297 CACACAAGAACAAAGCAATTTGGA 59.131 37.500 5.77 0.00 36.30 3.53
7269 7461 4.494526 GCACACAAGAACAAAGCAATTTGG 60.495 41.667 5.77 0.00 36.30 3.28
7271 7463 4.252073 TGCACACAAGAACAAAGCAATTT 58.748 34.783 0.00 0.00 0.00 1.82
7274 7466 3.523606 ATGCACACAAGAACAAAGCAA 57.476 38.095 0.00 0.00 33.91 3.91
7276 7468 4.863152 AAAATGCACACAAGAACAAAGC 57.137 36.364 0.00 0.00 0.00 3.51
7299 7723 4.635765 GTCCAGCAGTAAAATATGAGCACA 59.364 41.667 0.00 0.00 0.00 4.57
7316 7740 3.261933 GCTGCTTCAGTGTCCAGC 58.738 61.111 13.57 13.57 43.10 4.85
7352 7788 4.324267 ACCATCCCTGTCTAACGAAAAAG 58.676 43.478 0.00 0.00 0.00 2.27
7400 7837 4.276431 CCTATCTCGTAGGGTCAGAAGAAC 59.724 50.000 0.00 0.00 45.38 3.01
7419 7856 3.069729 GCGGAGTAATTGTGGAGTCCTAT 59.930 47.826 11.33 0.00 33.60 2.57
7433 7870 2.014128 GCAGGCTTAATTGCGGAGTAA 58.986 47.619 0.00 0.00 35.99 2.24
7456 9727 1.703411 TGGGTTGGAGAAAGCAAAGG 58.297 50.000 0.00 0.00 38.05 3.11
7459 9730 2.238521 GTGATGGGTTGGAGAAAGCAA 58.761 47.619 0.00 0.00 38.05 3.91
7460 9731 1.144708 TGTGATGGGTTGGAGAAAGCA 59.855 47.619 0.00 0.00 38.05 3.91
7530 9801 1.295101 CGGTGTACATGGTGCTGGA 59.705 57.895 0.00 0.00 0.00 3.86
7531 9802 2.398554 GCGGTGTACATGGTGCTGG 61.399 63.158 0.00 0.00 0.00 4.85
7532 9803 1.375908 AGCGGTGTACATGGTGCTG 60.376 57.895 11.64 0.13 0.00 4.41
7533 9804 1.375908 CAGCGGTGTACATGGTGCT 60.376 57.895 14.61 11.30 0.00 4.40
7534 9805 1.375396 TCAGCGGTGTACATGGTGC 60.375 57.895 15.22 12.38 0.00 5.01
7535 9806 0.320334 TGTCAGCGGTGTACATGGTG 60.320 55.000 15.22 18.71 0.00 4.17
7536 9807 0.320421 GTGTCAGCGGTGTACATGGT 60.320 55.000 15.22 0.00 0.00 3.55
7537 9808 1.351430 CGTGTCAGCGGTGTACATGG 61.351 60.000 21.43 14.10 0.00 3.66
7538 9809 0.666274 ACGTGTCAGCGGTGTACATG 60.666 55.000 24.67 24.67 36.44 3.21
7539 9810 0.388134 GACGTGTCAGCGGTGTACAT 60.388 55.000 15.22 3.78 35.98 2.29
7540 9811 1.008194 GACGTGTCAGCGGTGTACA 60.008 57.895 15.22 14.14 35.98 2.90
7541 9812 1.731969 GGACGTGTCAGCGGTGTAC 60.732 63.158 15.22 13.57 35.98 2.90
7542 9813 1.859427 GAGGACGTGTCAGCGGTGTA 61.859 60.000 15.22 2.24 35.98 2.90
7543 9814 3.208884 GAGGACGTGTCAGCGGTGT 62.209 63.158 15.22 0.00 35.98 4.16
7544 9815 2.430921 GAGGACGTGTCAGCGGTG 60.431 66.667 8.67 8.67 35.98 4.94
7545 9816 4.039357 CGAGGACGTGTCAGCGGT 62.039 66.667 0.00 0.00 35.98 5.68
7556 9827 4.415332 TTGAGCGACGGCGAGGAC 62.415 66.667 18.90 1.71 46.35 3.85
7557 9828 4.415332 GTTGAGCGACGGCGAGGA 62.415 66.667 18.90 0.00 46.35 3.71
7558 9829 4.421479 AGTTGAGCGACGGCGAGG 62.421 66.667 18.90 5.63 46.35 4.63
7559 9830 2.876645 GAGTTGAGCGACGGCGAG 60.877 66.667 18.90 8.50 46.35 5.03
7711 9982 0.541063 TGTCACCGAAGTAGCTCCCA 60.541 55.000 0.00 0.00 0.00 4.37
7735 10006 1.030488 TCAGGAGGTCGTCGATCACC 61.030 60.000 13.50 13.50 0.00 4.02
7872 10143 3.066198 GGGTGCTCCCGTTGTACT 58.934 61.111 8.37 0.00 44.74 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.