Multiple sequence alignment - TraesCS2B01G281900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G281900 chr2B 100.000 5057 0 0 1 5057 390366680 390361624 0.000000e+00 9339.0
1 TraesCS2B01G281900 chr2B 99.006 503 5 0 1 503 772347404 772346902 0.000000e+00 902.0
2 TraesCS2B01G281900 chr2B 98.406 502 7 1 3 503 593647060 593646559 0.000000e+00 881.0
3 TraesCS2B01G281900 chr2D 96.174 4025 83 17 555 4535 322125674 322121677 0.000000e+00 6514.0
4 TraesCS2B01G281900 chr2D 86.200 529 52 12 4545 5053 322121707 322121180 2.060000e-153 553.0
5 TraesCS2B01G281900 chr2D 90.036 281 22 2 37 311 24939501 24939221 4.810000e-95 359.0
6 TraesCS2B01G281900 chr2D 98.077 52 1 0 504 555 322128162 322128111 1.940000e-14 91.6
7 TraesCS2B01G281900 chr2A 95.341 3949 103 35 621 4535 409435939 409439840 0.000000e+00 6198.0
8 TraesCS2B01G281900 chr2A 87.078 503 50 9 13 503 74645656 74646155 5.720000e-154 555.0
9 TraesCS2B01G281900 chr2A 86.920 474 33 8 4573 5044 409440676 409441122 5.840000e-139 505.0
10 TraesCS2B01G281900 chr2A 90.351 114 11 0 369 482 767765561 767765674 3.150000e-32 150.0
11 TraesCS2B01G281900 chr2A 89.831 59 6 0 4474 4532 409439678 409439736 5.430000e-10 76.8
12 TraesCS2B01G281900 chr2A 97.222 36 1 0 466 501 767766417 767766452 1.520000e-05 62.1
13 TraesCS2B01G281900 chr6B 99.602 502 2 0 1 502 28223035 28222534 0.000000e+00 917.0
14 TraesCS2B01G281900 chr4A 99.203 502 4 0 2 503 607262415 607262916 0.000000e+00 905.0
15 TraesCS2B01G281900 chr6D 98.410 503 7 1 3 504 68970978 68971480 0.000000e+00 883.0
16 TraesCS2B01G281900 chr6D 98.406 502 7 1 3 503 345315404 345314903 0.000000e+00 881.0
17 TraesCS2B01G281900 chr7B 88.189 508 47 6 1 500 720176776 720177278 1.210000e-165 593.0
18 TraesCS2B01G281900 chr7B 83.019 424 69 2 2134 2554 1154504 1154927 1.030000e-101 381.0
19 TraesCS2B01G281900 chr7B 81.696 448 77 4 2135 2578 1020872 1021318 8.000000e-98 368.0
20 TraesCS2B01G281900 chr7B 82.311 424 71 3 2134 2554 229403 229825 1.030000e-96 364.0
21 TraesCS2B01G281900 chr5D 82.096 458 77 4 2134 2587 561803837 561803381 2.210000e-103 387.0
22 TraesCS2B01G281900 chr5D 82.838 437 67 6 2134 2564 562414392 562413958 7.940000e-103 385.0
23 TraesCS2B01G281900 chr5D 84.685 333 48 2 2133 2462 450204633 450204301 3.770000e-86 329.0
24 TraesCS2B01G281900 chr5B 82.258 434 73 3 2134 2564 711715205 711714773 6.180000e-99 372.0
25 TraesCS2B01G281900 chr7A 97.059 34 1 0 3775 3808 91362772 91362805 1.970000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G281900 chr2B 390361624 390366680 5056 True 9339.000000 9339 100.000000 1 5057 1 chr2B.!!$R1 5056
1 TraesCS2B01G281900 chr2B 772346902 772347404 502 True 902.000000 902 99.006000 1 503 1 chr2B.!!$R3 502
2 TraesCS2B01G281900 chr2B 593646559 593647060 501 True 881.000000 881 98.406000 3 503 1 chr2B.!!$R2 500
3 TraesCS2B01G281900 chr2D 322121180 322128162 6982 True 2386.200000 6514 93.483667 504 5053 3 chr2D.!!$R2 4549
4 TraesCS2B01G281900 chr2A 409435939 409441122 5183 False 2259.933333 6198 90.697333 621 5044 3 chr2A.!!$F2 4423
5 TraesCS2B01G281900 chr6B 28222534 28223035 501 True 917.000000 917 99.602000 1 502 1 chr6B.!!$R1 501
6 TraesCS2B01G281900 chr4A 607262415 607262916 501 False 905.000000 905 99.203000 2 503 1 chr4A.!!$F1 501
7 TraesCS2B01G281900 chr6D 68970978 68971480 502 False 883.000000 883 98.410000 3 504 1 chr6D.!!$F1 501
8 TraesCS2B01G281900 chr6D 345314903 345315404 501 True 881.000000 881 98.406000 3 503 1 chr6D.!!$R1 500
9 TraesCS2B01G281900 chr7B 720176776 720177278 502 False 593.000000 593 88.189000 1 500 1 chr7B.!!$F4 499

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
878 3333 0.179258 CATCACATCGCATCGCATCG 60.179 55.0 0.0 0.0 0.00 3.84 F
2130 4595 0.247460 TCTCCATGCTGTCCTTGTCG 59.753 55.0 0.0 0.0 0.00 4.35 F
2595 5060 0.248289 TCTCGAATTTCCCACCGTCC 59.752 55.0 0.0 0.0 0.00 4.79 F
3804 6269 1.222115 GCTTCGGTGTCGTCTTGCTT 61.222 55.0 0.0 0.0 37.69 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2778 5243 0.039764 TGAGATCTGTCAGGGACGGT 59.960 55.0 0.00 0.0 39.68 4.83 R
3303 5768 0.868406 CACCAGAAAGTCGCTTCACC 59.132 55.0 0.00 0.0 0.00 4.02 R
3984 6449 1.676678 GCCGAGGGTCAGTGCTGATA 61.677 60.0 5.11 0.0 42.18 2.15 R
4970 8300 0.035056 GACATCACCCCTTGACCTGG 60.035 60.0 0.00 0.0 36.92 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
545 555 2.280660 CCCTGGCTCGCAGCATAG 60.281 66.667 9.78 7.31 44.75 2.23
581 3028 2.126502 GCCAATTTCACACCGGCG 60.127 61.111 0.00 0.00 32.14 6.46
728 3182 4.391869 GGAACGGGGACTTTGGAC 57.608 61.111 0.00 0.00 0.00 4.02
729 3183 1.759236 GGAACGGGGACTTTGGACT 59.241 57.895 0.00 0.00 0.00 3.85
730 3184 0.605589 GGAACGGGGACTTTGGACTG 60.606 60.000 0.00 0.00 0.00 3.51
731 3185 1.228154 AACGGGGACTTTGGACTGC 60.228 57.895 0.00 0.00 0.00 4.40
732 3186 1.705997 AACGGGGACTTTGGACTGCT 61.706 55.000 0.00 0.00 0.00 4.24
733 3187 1.672356 CGGGGACTTTGGACTGCTG 60.672 63.158 0.00 0.00 0.00 4.41
734 3188 1.973812 GGGGACTTTGGACTGCTGC 60.974 63.158 0.00 0.00 0.00 5.25
735 3189 1.073897 GGGACTTTGGACTGCTGCT 59.926 57.895 0.00 0.00 0.00 4.24
791 3246 2.231721 GGAAGTGTGGAGTAGAGTGGAC 59.768 54.545 0.00 0.00 0.00 4.02
792 3247 2.982339 AGTGTGGAGTAGAGTGGACT 57.018 50.000 0.00 0.00 0.00 3.85
793 3248 3.246416 AGTGTGGAGTAGAGTGGACTT 57.754 47.619 0.00 0.00 0.00 3.01
878 3333 0.179258 CATCACATCGCATCGCATCG 60.179 55.000 0.00 0.00 0.00 3.84
936 3401 1.229082 AGCGTTACTCCCCACTCCA 60.229 57.895 0.00 0.00 0.00 3.86
1484 3949 1.757118 CAGCAATAACTCCCTCTCCGA 59.243 52.381 0.00 0.00 0.00 4.55
1671 4136 2.512515 GCAATCTTCGGCCTCGCT 60.513 61.111 0.00 0.00 36.13 4.93
1707 4172 2.044946 GTCGGCTCCAATGGGCTT 60.045 61.111 11.47 0.00 0.00 4.35
1983 4448 3.129287 CAGTGCTTGTTTCTGTTGACCTT 59.871 43.478 0.00 0.00 0.00 3.50
2060 4525 2.669569 GTCGCTCAGCCTTGCCAA 60.670 61.111 0.00 0.00 0.00 4.52
2130 4595 0.247460 TCTCCATGCTGTCCTTGTCG 59.753 55.000 0.00 0.00 0.00 4.35
2448 4913 3.742433 AACAATTCATTGGTTGGCGAA 57.258 38.095 4.58 0.00 41.96 4.70
2595 5060 0.248289 TCTCGAATTTCCCACCGTCC 59.752 55.000 0.00 0.00 0.00 4.79
3102 5567 1.274728 GAGGCCAGTGCTATCGATGAT 59.725 52.381 8.54 0.00 37.74 2.45
3303 5768 4.084888 GACGGAACAAAGGCGGCG 62.085 66.667 0.51 0.51 0.00 6.46
3660 6125 2.639327 GGCGCACCTGGCTGATTTT 61.639 57.895 10.83 0.00 41.67 1.82
3804 6269 1.222115 GCTTCGGTGTCGTCTTGCTT 61.222 55.000 0.00 0.00 37.69 3.91
3984 6449 2.616330 CGAAACGGCATGCAGGTGT 61.616 57.895 21.96 12.82 0.00 4.16
4090 6555 7.125053 TGTTATTTTCCCAGTTCTCTTTTGGTT 59.875 33.333 0.00 0.00 0.00 3.67
4312 6785 5.163581 GGTCTCTATGAAAATGTTGCTGCAT 60.164 40.000 1.84 0.00 0.00 3.96
4335 6809 4.399618 TCCTGAACTTACGATTCTCTCCTG 59.600 45.833 0.00 0.00 0.00 3.86
4403 6900 7.507733 AATGATGCTATCTCTTTTAGCTTGG 57.492 36.000 0.00 0.00 42.08 3.61
4464 6961 1.472878 GTCGCTATATGGCCTGATCGA 59.527 52.381 3.32 2.69 0.00 3.59
4480 6977 6.292919 GCCTGATCGACATAATAACCTTTGAC 60.293 42.308 0.00 0.00 0.00 3.18
4537 7034 6.453092 TGGTACAAGCTGTTTAGAGTAAGTC 58.547 40.000 0.00 0.00 31.92 3.01
4538 7035 6.041182 TGGTACAAGCTGTTTAGAGTAAGTCA 59.959 38.462 0.00 0.00 31.92 3.41
4539 7036 6.586844 GGTACAAGCTGTTTAGAGTAAGTCAG 59.413 42.308 0.00 0.00 0.00 3.51
4540 7037 4.991687 ACAAGCTGTTTAGAGTAAGTCAGC 59.008 41.667 6.83 6.83 42.27 4.26
4543 7040 6.591750 AGCTGTTTAGAGTAAGTCAGCTTA 57.408 37.500 10.95 0.00 45.73 3.09
4559 7056 9.502091 AAGTCAGCTTACATAATTGTTTGTAGA 57.498 29.630 0.03 0.00 37.28 2.59
4560 7057 9.502091 AGTCAGCTTACATAATTGTTTGTAGAA 57.498 29.630 0.03 0.00 37.28 2.10
4561 7058 9.760660 GTCAGCTTACATAATTGTTTGTAGAAG 57.239 33.333 0.00 0.00 37.28 2.85
4562 7059 8.450964 TCAGCTTACATAATTGTTTGTAGAAGC 58.549 33.333 12.74 12.74 38.98 3.86
4563 7060 8.454106 CAGCTTACATAATTGTTTGTAGAAGCT 58.546 33.333 15.27 15.27 44.88 3.74
4564 7061 8.454106 AGCTTACATAATTGTTTGTAGAAGCTG 58.546 33.333 17.87 0.00 43.51 4.24
4565 7062 8.237267 GCTTACATAATTGTTTGTAGAAGCTGT 58.763 33.333 13.07 0.00 37.15 4.40
4606 7901 6.507900 AGAGTCGCCATATTATAATGATCCG 58.492 40.000 8.28 6.23 0.00 4.18
4608 7903 5.050490 GTCGCCATATTATAATGATCCGCT 58.950 41.667 8.28 0.00 0.00 5.52
4730 8028 5.104900 ACTCAATAAATGGTCTCGTAGCCTT 60.105 40.000 0.00 0.00 0.00 4.35
4752 8051 2.489938 TATTTGGAGCTTGCGGAAGT 57.510 45.000 18.40 5.04 0.00 3.01
4760 8059 2.100916 GAGCTTGCGGAAGTCCAGTATA 59.899 50.000 18.40 0.00 35.14 1.47
4766 8065 2.362717 GCGGAAGTCCAGTATAGAGCTT 59.637 50.000 0.00 0.00 35.14 3.74
4821 8120 2.880890 GTTTCAGCTTCTTCCTGCTTGA 59.119 45.455 0.00 0.00 37.44 3.02
4832 8162 0.954449 CCTGCTTGAGCCACAGTCAG 60.954 60.000 0.00 0.00 41.18 3.51
4878 8208 0.591170 CACCACCGACAATCAACCAC 59.409 55.000 0.00 0.00 0.00 4.16
4880 8210 0.250727 CCACCGACAATCAACCACCT 60.251 55.000 0.00 0.00 0.00 4.00
4882 8212 0.472471 ACCGACAATCAACCACCTGT 59.528 50.000 0.00 0.00 0.00 4.00
4964 8294 2.568509 TGACATCATCTCCTGTCTTGCA 59.431 45.455 4.53 0.00 41.83 4.08
4970 8300 2.462456 TCTCCTGTCTTGCATGTGAC 57.538 50.000 7.73 7.73 0.00 3.67
4977 8307 0.764271 TCTTGCATGTGACCAGGTCA 59.236 50.000 19.21 19.21 40.50 4.02
4978 8308 1.142667 TCTTGCATGTGACCAGGTCAA 59.857 47.619 24.65 14.44 44.49 3.18
4980 8310 0.250858 TGCATGTGACCAGGTCAAGG 60.251 55.000 24.65 16.50 44.49 3.61
4998 8328 1.637553 AGGGGTGATGTCTGAGCAATT 59.362 47.619 0.00 0.00 0.00 2.32
5039 8369 1.536766 CTTTTCTCACCATGAAGCGCA 59.463 47.619 11.47 0.00 0.00 6.09
5044 8374 0.462581 TCACCATGAAGCGCATCCTC 60.463 55.000 11.47 0.45 34.15 3.71
5046 8376 0.254178 ACCATGAAGCGCATCCTCTT 59.746 50.000 11.47 0.00 34.15 2.85
5049 8379 2.740981 CCATGAAGCGCATCCTCTTATC 59.259 50.000 11.47 0.00 34.15 1.75
5053 8383 1.005630 GCGCATCCTCTTATCGCCT 60.006 57.895 0.30 0.00 39.91 5.52
5054 8384 1.011451 GCGCATCCTCTTATCGCCTC 61.011 60.000 0.30 0.00 39.91 4.70
5055 8385 0.389166 CGCATCCTCTTATCGCCTCC 60.389 60.000 0.00 0.00 0.00 4.30
5056 8386 0.972883 GCATCCTCTTATCGCCTCCT 59.027 55.000 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
545 555 1.079503 CCTGGACTTTACTTGCTCGC 58.920 55.000 0.00 0.00 0.00 5.03
599 3046 1.726322 GGCATCGCGTCTAGCTACG 60.726 63.158 5.77 4.64 45.59 3.51
730 3184 1.080705 CAGAAAGGCTTGCAGCAGC 60.081 57.895 8.21 1.52 44.75 5.25
731 3185 1.080705 GCAGAAAGGCTTGCAGCAG 60.081 57.895 16.99 0.64 44.75 4.24
732 3186 1.529948 AGCAGAAAGGCTTGCAGCA 60.530 52.632 22.84 0.00 44.75 4.41
733 3187 1.080705 CAGCAGAAAGGCTTGCAGC 60.081 57.895 14.37 14.37 42.71 5.25
734 3188 0.240411 GACAGCAGAAAGGCTTGCAG 59.760 55.000 8.21 4.22 42.71 4.41
735 3189 0.179009 AGACAGCAGAAAGGCTTGCA 60.179 50.000 8.21 0.00 42.71 4.08
954 3419 3.098774 AGTCAGAGAGAAGCCATCTGA 57.901 47.619 0.16 0.16 45.39 3.27
962 3427 6.372185 CAATTGCAAGAAAGTCAGAGAGAAG 58.628 40.000 4.94 0.00 0.00 2.85
1446 3911 0.469705 TGGCATTGAAGGCAACCAGT 60.470 50.000 3.66 0.00 41.47 4.00
1620 4085 3.294493 GCAAAGGAGTTGGCGCCA 61.294 61.111 29.03 29.03 37.73 5.69
1671 4136 1.881903 CGGAGAGCTTCTGCAGTCCA 61.882 60.000 14.67 0.00 41.01 4.02
1680 4145 2.103340 GAGCCGACGGAGAGCTTC 59.897 66.667 20.50 0.00 36.87 3.86
1810 4275 1.730064 GAAATGCTCCAGCGACGTTAA 59.270 47.619 0.00 0.00 45.83 2.01
1983 4448 1.411977 CCATTCAGGTGGTTTGTTGCA 59.588 47.619 0.00 0.00 34.46 4.08
2060 4525 4.581868 CAATTGCCCCATCAATTTGTTCT 58.418 39.130 0.00 0.00 42.21 3.01
2091 4556 2.799371 GACCTGAGACGGCCGTAG 59.201 66.667 34.36 24.95 0.00 3.51
2130 4595 2.276472 TGTTGTGCAAGCTGTTGTTC 57.724 45.000 0.00 0.00 35.92 3.18
2272 4737 1.798735 CACAATCGCCAAGAGCCAG 59.201 57.895 0.00 0.00 38.78 4.85
2448 4913 3.744530 GCTGTGTCAAACTCTTGGGTACT 60.745 47.826 0.00 0.00 33.01 2.73
2595 5060 6.016860 TCAGACCATTGTCATTCAAGAACAAG 60.017 38.462 0.00 0.00 44.33 3.16
2778 5243 0.039764 TGAGATCTGTCAGGGACGGT 59.960 55.000 0.00 0.00 39.68 4.83
3102 5567 3.691342 CCCCCAGCGTCGTCTTCA 61.691 66.667 0.00 0.00 0.00 3.02
3303 5768 0.868406 CACCAGAAAGTCGCTTCACC 59.132 55.000 0.00 0.00 0.00 4.02
3660 6125 2.104792 CTGTATTAGCCTTGCTAGCCCA 59.895 50.000 13.29 0.00 42.34 5.36
3804 6269 1.813178 CGTCTACCAGTGAGAAGCTCA 59.187 52.381 0.00 0.00 38.25 4.26
3984 6449 1.676678 GCCGAGGGTCAGTGCTGATA 61.677 60.000 5.11 0.00 42.18 2.15
4292 6765 4.951715 AGGATGCAGCAACATTTTCATAGA 59.048 37.500 3.51 0.00 0.00 1.98
4312 6785 4.399618 CAGGAGAGAATCGTAAGTTCAGGA 59.600 45.833 0.00 0.00 42.67 3.86
4335 6809 5.938125 TGGCTGTCCTTAAATCAGTTTCTAC 59.062 40.000 0.00 0.00 0.00 2.59
4403 6900 8.726988 TCTAAACAGCTTGTACCAACAATTATC 58.273 33.333 0.00 0.00 44.43 1.75
4449 6946 7.344612 AGGTTATTATGTCGATCAGGCCATATA 59.655 37.037 5.01 0.00 0.00 0.86
4493 6990 6.720112 ACCAACAATTATGCAAGCTGATAT 57.280 33.333 0.00 0.00 0.00 1.63
4495 6992 5.418524 TGTACCAACAATTATGCAAGCTGAT 59.581 36.000 0.00 0.00 30.91 2.90
4535 7032 9.760660 CTTCTACAAACAATTATGTAAGCTGAC 57.239 33.333 0.00 0.00 39.40 3.51
4537 7034 8.454106 AGCTTCTACAAACAATTATGTAAGCTG 58.546 33.333 18.15 3.51 45.41 4.24
4538 7035 8.454106 CAGCTTCTACAAACAATTATGTAAGCT 58.546 33.333 15.51 15.51 46.87 3.74
4539 7036 8.237267 ACAGCTTCTACAAACAATTATGTAAGC 58.763 33.333 12.95 12.95 41.04 3.09
4547 7044 8.451908 ACTCTAAACAGCTTCTACAAACAATT 57.548 30.769 0.00 0.00 0.00 2.32
4548 7045 9.555727 TTACTCTAAACAGCTTCTACAAACAAT 57.444 29.630 0.00 0.00 0.00 2.71
4549 7046 8.823818 GTTACTCTAAACAGCTTCTACAAACAA 58.176 33.333 0.00 0.00 0.00 2.83
4550 7047 8.202137 AGTTACTCTAAACAGCTTCTACAAACA 58.798 33.333 0.00 0.00 0.00 2.83
4551 7048 8.590719 AGTTACTCTAAACAGCTTCTACAAAC 57.409 34.615 0.00 0.00 0.00 2.93
4552 7049 8.639761 AGAGTTACTCTAAACAGCTTCTACAAA 58.360 33.333 13.84 0.00 39.28 2.83
4553 7050 8.179509 AGAGTTACTCTAAACAGCTTCTACAA 57.820 34.615 13.84 0.00 39.28 2.41
4554 7051 7.762588 AGAGTTACTCTAAACAGCTTCTACA 57.237 36.000 13.84 0.00 39.28 2.74
4557 7054 9.169592 CTACTAGAGTTACTCTAAACAGCTTCT 57.830 37.037 20.78 1.02 41.74 2.85
4559 7056 9.169592 CTCTACTAGAGTTACTCTAAACAGCTT 57.830 37.037 20.78 1.93 41.74 3.74
4560 7057 8.726870 CTCTACTAGAGTTACTCTAAACAGCT 57.273 38.462 20.78 6.81 41.74 4.24
4668 7966 1.112113 AACTATGCCGATCGACACCT 58.888 50.000 18.66 0.00 0.00 4.00
4730 8028 2.708216 TCCGCAAGCTCCAAATATGA 57.292 45.000 0.00 0.00 0.00 2.15
4752 8051 3.032265 TGGAGCAAGCTCTATACTGGA 57.968 47.619 20.26 0.00 42.38 3.86
4821 8120 2.435372 TTCAAAACCTGACTGTGGCT 57.565 45.000 0.00 0.00 32.21 4.75
4832 8162 2.802247 GAGGCTGCACAATTTCAAAACC 59.198 45.455 0.50 0.00 0.00 3.27
4865 8195 1.156736 GGACAGGTGGTTGATTGTCG 58.843 55.000 0.00 0.00 40.55 4.35
4868 8198 5.185635 ACATTAATGGACAGGTGGTTGATTG 59.814 40.000 19.37 0.00 0.00 2.67
4869 8199 5.332743 ACATTAATGGACAGGTGGTTGATT 58.667 37.500 19.37 0.00 0.00 2.57
4878 8208 3.016736 GGGTGTGACATTAATGGACAGG 58.983 50.000 19.37 0.00 0.00 4.00
4880 8210 2.705730 CGGGTGTGACATTAATGGACA 58.294 47.619 19.37 16.97 0.00 4.02
4882 8212 1.280710 AGCGGGTGTGACATTAATGGA 59.719 47.619 19.37 3.02 0.00 3.41
4964 8294 0.772124 ACCCCTTGACCTGGTCACAT 60.772 55.000 28.35 9.93 42.60 3.21
4970 8300 0.035056 GACATCACCCCTTGACCTGG 60.035 60.000 0.00 0.00 36.92 4.45
4977 8307 1.067295 TTGCTCAGACATCACCCCTT 58.933 50.000 0.00 0.00 0.00 3.95
4978 8308 1.293062 ATTGCTCAGACATCACCCCT 58.707 50.000 0.00 0.00 0.00 4.79
4980 8310 2.681848 CTCAATTGCTCAGACATCACCC 59.318 50.000 0.00 0.00 0.00 4.61
4998 8328 4.056125 CCACGCTCACGCCTCTCA 62.056 66.667 0.00 0.00 45.53 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.