Multiple sequence alignment - TraesCS2B01G281000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G281000 chr2B 100.000 5428 0 0 1 5428 387697566 387702993 0.000000e+00 10024.0
1 TraesCS2B01G281000 chr2B 100.000 3058 0 0 5817 8874 387703382 387706439 0.000000e+00 5648.0
2 TraesCS2B01G281000 chr2B 88.916 415 45 1 8459 8873 777132184 777132597 2.210000e-140 510.0
3 TraesCS2B01G281000 chr2B 82.772 534 58 12 8347 8874 470497366 470497871 6.320000e-121 446.0
4 TraesCS2B01G281000 chr2B 87.179 234 16 2 8353 8585 800045192 800044972 4.110000e-63 254.0
5 TraesCS2B01G281000 chr2B 93.182 176 5 4 4495 4663 547430819 547430994 1.480000e-62 252.0
6 TraesCS2B01G281000 chr2B 88.068 176 21 0 1000 1175 180059837 180059662 9.030000e-50 209.0
7 TraesCS2B01G281000 chr2B 92.105 114 7 2 4663 4776 254691728 254691617 9.220000e-35 159.0
8 TraesCS2B01G281000 chr2A 94.008 2737 90 28 1738 4433 411949320 411946617 0.000000e+00 4078.0
9 TraesCS2B01G281000 chr2A 95.059 2550 78 14 5817 8344 411945916 411943393 0.000000e+00 3967.0
10 TraesCS2B01G281000 chr2A 93.813 1778 52 22 1 1737 411951128 411949368 0.000000e+00 2621.0
11 TraesCS2B01G281000 chr2A 96.402 667 20 4 4765 5428 411946619 411945954 0.000000e+00 1096.0
12 TraesCS2B01G281000 chr2A 88.068 176 21 0 1000 1175 132876425 132876250 9.030000e-50 209.0
13 TraesCS2B01G281000 chr2D 94.918 2558 85 12 5817 8344 318914932 318917474 0.000000e+00 3962.0
14 TraesCS2B01G281000 chr2D 92.505 2735 108 43 1737 4433 318911447 318914122 0.000000e+00 3825.0
15 TraesCS2B01G281000 chr2D 93.782 1769 43 24 1 1731 318909647 318911386 0.000000e+00 2595.0
16 TraesCS2B01G281000 chr2D 95.567 564 22 3 4765 5326 318914120 318914682 0.000000e+00 900.0
17 TraesCS2B01G281000 chr2D 86.932 176 23 0 1000 1175 126149541 126149366 1.950000e-46 198.0
18 TraesCS2B01G281000 chr2D 94.340 106 2 4 5324 5428 318914791 318914893 9.220000e-35 159.0
19 TraesCS2B01G281000 chrUn 90.170 529 51 1 8347 8874 307327678 307328206 0.000000e+00 688.0
20 TraesCS2B01G281000 chrUn 95.930 172 5 1 4493 4662 79622480 79622651 2.440000e-70 278.0
21 TraesCS2B01G281000 chrUn 96.450 169 3 2 4494 4662 373622200 373622035 8.780000e-70 276.0
22 TraesCS2B01G281000 chrUn 89.286 84 5 3 4408 4488 74544583 74544665 1.580000e-17 102.0
23 TraesCS2B01G281000 chr7B 89.354 526 49 5 8350 8874 533845120 533844601 0.000000e+00 654.0
24 TraesCS2B01G281000 chr7B 86.604 530 64 6 8347 8874 552711523 552712047 5.970000e-161 579.0
25 TraesCS2B01G281000 chr7B 96.450 169 6 0 4494 4662 250750990 250751158 6.780000e-71 279.0
26 TraesCS2B01G281000 chr7B 96.078 102 4 0 4665 4766 718943186 718943287 5.510000e-37 167.0
27 TraesCS2B01G281000 chr7B 95.192 104 5 0 4663 4766 483770709 483770606 1.980000e-36 165.0
28 TraesCS2B01G281000 chr7B 95.192 104 5 0 4663 4766 710104988 710104885 1.980000e-36 165.0
29 TraesCS2B01G281000 chr7B 95.192 104 5 0 4663 4766 710116597 710116494 1.980000e-36 165.0
30 TraesCS2B01G281000 chr7B 95.192 104 5 0 4663 4766 710127697 710127594 1.980000e-36 165.0
31 TraesCS2B01G281000 chr7B 93.827 81 3 2 4416 4494 64695638 64695558 4.350000e-23 121.0
32 TraesCS2B01G281000 chr1B 90.426 470 35 5 8415 8874 642914224 642914693 2.120000e-170 610.0
33 TraesCS2B01G281000 chr1B 91.017 423 38 0 8452 8874 403201332 403200910 1.000000e-158 571.0
34 TraesCS2B01G281000 chr1B 95.283 106 5 0 4663 4768 338803965 338803860 1.530000e-37 169.0
35 TraesCS2B01G281000 chr4B 86.168 535 55 14 8347 8874 660392359 660392881 2.160000e-155 560.0
36 TraesCS2B01G281000 chr4B 92.982 171 10 1 4494 4662 527646925 527646755 1.910000e-61 248.0
37 TraesCS2B01G281000 chr4B 93.636 110 7 0 4663 4772 28073017 28072908 1.980000e-36 165.0
38 TraesCS2B01G281000 chr4A 86.168 535 53 14 8350 8874 677465792 677465269 7.780000e-155 558.0
39 TraesCS2B01G281000 chr4A 86.611 478 56 5 8399 8874 193075017 193075488 1.020000e-143 521.0
40 TraesCS2B01G281000 chr1A 97.647 170 4 0 4493 4662 534434717 534434548 8.710000e-75 292.0
41 TraesCS2B01G281000 chr3D 95.882 170 7 0 4494 4663 606630692 606630861 8.780000e-70 276.0
42 TraesCS2B01G281000 chr3D 89.655 87 3 6 4412 4494 341147668 341147584 1.220000e-18 106.0
43 TraesCS2B01G281000 chr5B 95.266 169 3 1 4494 4657 255199068 255199236 6.830000e-66 263.0
44 TraesCS2B01G281000 chr5B 90.741 54 5 0 7350 7403 573803766 573803713 1.240000e-08 73.1
45 TraesCS2B01G281000 chr6D 92.442 172 11 1 4493 4662 610147 610318 2.470000e-60 244.0
46 TraesCS2B01G281000 chr3B 96.154 104 4 0 4663 4766 760605075 760604972 4.260000e-38 171.0
47 TraesCS2B01G281000 chr3B 89.888 89 4 5 4409 4494 172174863 172174777 9.420000e-20 110.0
48 TraesCS2B01G281000 chr5D 94.521 73 2 2 4418 4488 451543503 451543575 2.620000e-20 111.0
49 TraesCS2B01G281000 chr5D 90.741 54 5 0 7350 7403 467177492 467177439 1.240000e-08 73.1
50 TraesCS2B01G281000 chr3A 94.444 72 1 3 4419 4488 582946250 582946320 3.390000e-19 108.0
51 TraesCS2B01G281000 chr5A 88.172 93 5 6 4402 4491 555280742 555280831 1.220000e-18 106.0
52 TraesCS2B01G281000 chr5A 90.741 54 5 0 7350 7403 587412352 587412299 1.240000e-08 73.1
53 TraesCS2B01G281000 chr6B 95.385 65 2 1 4431 4494 366784574 366784510 1.580000e-17 102.0
54 TraesCS2B01G281000 chr7D 87.234 94 5 6 4405 4494 39001475 39001385 5.670000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G281000 chr2B 387697566 387706439 8873 False 7836.0 10024 100.0000 1 8874 2 chr2B.!!$F4 8873
1 TraesCS2B01G281000 chr2B 470497366 470497871 505 False 446.0 446 82.7720 8347 8874 1 chr2B.!!$F1 527
2 TraesCS2B01G281000 chr2A 411943393 411951128 7735 True 2940.5 4078 94.8205 1 8344 4 chr2A.!!$R2 8343
3 TraesCS2B01G281000 chr2D 318909647 318917474 7827 False 2288.2 3962 94.2224 1 8344 5 chr2D.!!$F1 8343
4 TraesCS2B01G281000 chrUn 307327678 307328206 528 False 688.0 688 90.1700 8347 8874 1 chrUn.!!$F3 527
5 TraesCS2B01G281000 chr7B 533844601 533845120 519 True 654.0 654 89.3540 8350 8874 1 chr7B.!!$R3 524
6 TraesCS2B01G281000 chr7B 552711523 552712047 524 False 579.0 579 86.6040 8347 8874 1 chr7B.!!$F2 527
7 TraesCS2B01G281000 chr4B 660392359 660392881 522 False 560.0 560 86.1680 8347 8874 1 chr4B.!!$F1 527
8 TraesCS2B01G281000 chr4A 677465269 677465792 523 True 558.0 558 86.1680 8350 8874 1 chr4A.!!$R1 524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
129 150 0.036022 ACCTTGCACTGAAGAGAGGC 59.964 55.000 0.00 0.00 0.00 4.70 F
711 744 0.102481 GCCGCTGCTGCTACTACTAA 59.898 55.000 14.03 0.00 36.97 2.24 F
1472 1526 0.445436 CGCATGTGCTTCCTCACTTC 59.555 55.000 3.25 0.00 39.32 3.01 F
2713 2853 0.113190 CAGGCTTCTGGAACCCCTTT 59.887 55.000 0.00 0.00 34.96 3.11 F
3485 3641 3.002348 GGTTTCCGAATTAGAAGGATGCG 59.998 47.826 0.00 0.00 33.57 4.73 F
4528 4689 0.032130 CTAAGCATCTTAGCGGCGGA 59.968 55.000 9.78 0.00 40.15 5.54 F
4637 4798 0.171455 ATAGCGTGCTATAGCGGAGC 59.829 55.000 22.98 22.98 45.83 4.70 F
4664 4825 3.439129 GCGGGCTATTTAAAACAGTGAGT 59.561 43.478 0.00 0.00 0.00 3.41 F
6459 6737 3.929610 GTCTATAAGGAGCGCATGGATTC 59.070 47.826 11.47 0.00 0.00 2.52 F
6882 7160 4.676924 GGAACGAGCATATAATTTTGCAGC 59.323 41.667 9.49 0.00 41.35 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1655 1709 0.537188 GGATCAGTCGGAGGCAAGAA 59.463 55.000 0.00 0.00 0.00 2.52 R
1914 2027 0.676151 GCCCAGCTCACTTCTTGGAG 60.676 60.000 0.00 0.00 0.00 3.86 R
3367 3519 0.882042 GAGCCACTATGCCATGGTCG 60.882 60.000 14.67 1.94 38.34 4.79 R
4509 4670 0.032130 TCCGCCGCTAAGATGCTTAG 59.968 55.000 9.30 9.30 0.00 2.18 R
4750 4911 0.113776 TGTGTACTCCCTCCGTTCCT 59.886 55.000 0.00 0.00 0.00 3.36 R
6413 6691 3.773119 TGGAAGGAGGAGCTACGTAAATT 59.227 43.478 0.00 0.00 0.00 1.82 R
6459 6737 5.651139 AGTTGATGGTCAATGGAAATCTCAG 59.349 40.000 0.00 0.00 38.79 3.35 R
6603 6881 7.732025 TGTGAGTATATGGTAAGGTAATGTGG 58.268 38.462 0.00 0.00 0.00 4.17 R
7571 7881 1.483496 GGGTTGGTTTTGGGTATGGGT 60.483 52.381 0.00 0.00 0.00 4.51 R
8749 9121 0.463295 CCGGCTGCATCAGTCAGAAT 60.463 55.000 0.50 0.00 35.60 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 3.545703 ACCCAGAACTTCACTTGTCTTG 58.454 45.455 0.00 0.00 0.00 3.02
70 71 3.342377 TCACTTGTCTTGTCACCAACA 57.658 42.857 0.00 0.00 35.59 3.33
119 121 1.985159 TGGTTGGAGATACCTTGCACT 59.015 47.619 0.00 0.00 39.86 4.40
120 122 2.290260 TGGTTGGAGATACCTTGCACTG 60.290 50.000 0.00 0.00 39.86 3.66
129 150 0.036022 ACCTTGCACTGAAGAGAGGC 59.964 55.000 0.00 0.00 0.00 4.70
131 152 0.324285 CTTGCACTGAAGAGAGGCCT 59.676 55.000 3.86 3.86 0.00 5.19
204 225 1.004044 CTGGCACTCCTGGTTCTGATT 59.996 52.381 0.00 0.00 0.00 2.57
267 288 4.656112 AGTTAGCAGGCATGGTATCTACTT 59.344 41.667 16.97 0.00 39.08 2.24
272 293 7.502060 AGCAGGCATGGTATCTACTTATAAT 57.498 36.000 0.00 0.00 34.74 1.28
273 294 8.609617 AGCAGGCATGGTATCTACTTATAATA 57.390 34.615 0.00 0.00 34.74 0.98
274 295 9.218525 AGCAGGCATGGTATCTACTTATAATAT 57.781 33.333 0.00 0.00 34.74 1.28
275 296 9.265901 GCAGGCATGGTATCTACTTATAATATG 57.734 37.037 0.00 0.00 0.00 1.78
276 297 9.265901 CAGGCATGGTATCTACTTATAATATGC 57.734 37.037 0.00 0.00 34.92 3.14
337 358 9.745880 GTGTTACATGTATGTACTTGCTACTAT 57.254 33.333 6.36 0.00 42.48 2.12
524 546 3.169908 GAGAGAGAAAGAGGGACCAACT 58.830 50.000 0.00 0.00 0.00 3.16
564 586 5.635120 GGAGATACCCAAAGGCAGATTTAT 58.365 41.667 0.00 0.00 36.11 1.40
565 587 6.071320 GGAGATACCCAAAGGCAGATTTATT 58.929 40.000 0.00 0.00 36.11 1.40
711 744 0.102481 GCCGCTGCTGCTACTACTAA 59.898 55.000 14.03 0.00 36.97 2.24
713 746 2.194271 CCGCTGCTGCTACTACTAAAC 58.806 52.381 14.03 0.00 36.97 2.01
717 750 3.994392 GCTGCTGCTACTACTAAACACAA 59.006 43.478 8.53 0.00 36.03 3.33
718 751 4.631813 GCTGCTGCTACTACTAAACACAAT 59.368 41.667 8.53 0.00 36.03 2.71
720 753 6.019479 GCTGCTGCTACTACTAAACACAATAG 60.019 42.308 8.53 0.00 36.03 1.73
721 754 6.338146 TGCTGCTACTACTAAACACAATAGG 58.662 40.000 0.00 0.00 0.00 2.57
722 755 5.753921 GCTGCTACTACTAAACACAATAGGG 59.246 44.000 0.00 0.00 0.00 3.53
729 762 5.941555 ACTAAACACAATAGGGAGAGAGG 57.058 43.478 0.00 0.00 0.00 3.69
737 770 1.827792 TAGGGAGAGAGGGAGAGAGG 58.172 60.000 0.00 0.00 0.00 3.69
769 802 1.815817 GAGCGTGTGGGGCCATTTTT 61.816 55.000 4.39 0.00 0.00 1.94
860 893 5.410067 CAATTACACCACAAATCCATCCAC 58.590 41.667 0.00 0.00 0.00 4.02
1209 1244 0.834687 TCCCCACCCACGCCTATATC 60.835 60.000 0.00 0.00 0.00 1.63
1472 1526 0.445436 CGCATGTGCTTCCTCACTTC 59.555 55.000 3.25 0.00 39.32 3.01
1523 1577 2.434336 TCTGAGTTTGTGTGCTACAGGT 59.566 45.455 0.00 0.00 41.10 4.00
1595 1649 5.768980 TTGATTTTCTCCTCAGTCCTCAT 57.231 39.130 0.00 0.00 0.00 2.90
1655 1709 2.319844 CTCCCCACTTTTGCCTTTTCT 58.680 47.619 0.00 0.00 0.00 2.52
1766 1875 1.071071 CCCCGCGGGTAATTAGATGAA 59.929 52.381 40.52 0.00 38.25 2.57
1876 1986 4.751767 TGGCTTTTCTTGTGACCAAAAT 57.248 36.364 0.00 0.00 0.00 1.82
1877 1987 4.692228 TGGCTTTTCTTGTGACCAAAATC 58.308 39.130 0.00 0.00 0.00 2.17
1878 1988 4.161189 TGGCTTTTCTTGTGACCAAAATCA 59.839 37.500 0.00 0.00 0.00 2.57
2033 2157 0.518636 CATGCAGTGAACCCGACTTG 59.481 55.000 0.00 0.00 0.00 3.16
2155 2280 5.936956 TGGCTCTTCTTTGATCTTCTTCTTC 59.063 40.000 0.00 0.00 0.00 2.87
2156 2281 6.172630 GGCTCTTCTTTGATCTTCTTCTTCT 58.827 40.000 0.00 0.00 0.00 2.85
2157 2282 6.654582 GGCTCTTCTTTGATCTTCTTCTTCTT 59.345 38.462 0.00 0.00 0.00 2.52
2197 2323 6.946526 ACTCCTATTTATTTCTCCCCCTCTA 58.053 40.000 0.00 0.00 0.00 2.43
2200 2326 8.830084 TCCTATTTATTTCTCCCCCTCTATTT 57.170 34.615 0.00 0.00 0.00 1.40
2261 2396 8.456471 AGCTCGGTTTTATTTGGTAGAAATAAC 58.544 33.333 0.00 0.00 33.35 1.89
2313 2448 8.634444 AGTATAGTAGTACTGGATCTTTGCTTG 58.366 37.037 13.29 0.00 33.78 4.01
2379 2514 9.182214 AGAGAAATAAAGGTGTACGATGTACTA 57.818 33.333 8.41 0.00 0.00 1.82
2380 2515 9.230932 GAGAAATAAAGGTGTACGATGTACTAC 57.769 37.037 8.41 5.31 0.00 2.73
2382 2517 7.651027 AATAAAGGTGTACGATGTACTACCT 57.349 36.000 17.70 17.70 40.07 3.08
2383 2518 8.752005 AATAAAGGTGTACGATGTACTACCTA 57.248 34.615 20.93 12.97 37.55 3.08
2384 2519 6.690194 AAAGGTGTACGATGTACTACCTAG 57.310 41.667 20.93 0.00 37.55 3.02
2385 2520 4.133078 AGGTGTACGATGTACTACCTAGC 58.867 47.826 20.03 7.19 36.81 3.42
2386 2521 4.133078 GGTGTACGATGTACTACCTAGCT 58.867 47.826 15.36 0.00 0.00 3.32
2515 2651 7.655732 GGTAACAGTATGCATGTATGTATGTCA 59.344 37.037 10.16 0.00 42.53 3.58
2625 2764 6.770286 ATATGGTCTATATAAGGCATGGGG 57.230 41.667 0.00 0.00 30.12 4.96
2651 2791 8.150827 ACCTATGTGCCACATATATACAAGAT 57.849 34.615 17.40 0.00 40.01 2.40
2713 2853 0.113190 CAGGCTTCTGGAACCCCTTT 59.887 55.000 0.00 0.00 34.96 3.11
2771 2911 3.573538 AGGCTGCACATCTCTATAGTCTG 59.426 47.826 0.50 0.00 0.00 3.51
2843 2983 4.495911 TGACCGTACGTACAAACATACA 57.504 40.909 24.50 11.31 0.00 2.29
2845 2985 3.836949 ACCGTACGTACAAACATACAGG 58.163 45.455 24.50 15.80 30.01 4.00
2852 2992 7.325821 CGTACGTACAAACATACAGGTTAAGAA 59.674 37.037 24.50 0.00 0.00 2.52
2870 3010 3.695816 AGAACTTCTTCTTTTGTTGCGC 58.304 40.909 0.00 0.00 32.29 6.09
3050 3194 3.270027 CAGCCATCCATTCAACTCGTTA 58.730 45.455 0.00 0.00 0.00 3.18
3055 3202 6.772716 AGCCATCCATTCAACTCGTTAATAAT 59.227 34.615 0.00 0.00 0.00 1.28
3094 3241 3.786516 CATGCATGCATGTCCTGTAAA 57.213 42.857 40.30 10.25 46.20 2.01
3095 3242 4.316205 CATGCATGCATGTCCTGTAAAT 57.684 40.909 40.30 13.68 46.20 1.40
3096 3243 4.689071 CATGCATGCATGTCCTGTAAATT 58.311 39.130 40.30 13.48 46.20 1.82
3097 3244 4.112716 TGCATGCATGTCCTGTAAATTG 57.887 40.909 26.79 0.00 0.00 2.32
3146 3293 5.761726 ACCTTGATATCACATGTGTGCTATG 59.238 40.000 24.63 10.97 45.25 2.23
3226 3376 8.798859 AGATGGGTGAGATATATGTTTTATGC 57.201 34.615 0.00 0.00 0.00 3.14
3278 3430 7.345691 TCCAAGGCAATCAAGACTGATATTAA 58.654 34.615 0.00 0.00 41.66 1.40
3367 3519 7.823799 TGGGAATTTCTTATTTTTGATTGCTCC 59.176 33.333 0.00 0.00 0.00 4.70
3369 3521 7.759433 GGAATTTCTTATTTTTGATTGCTCCGA 59.241 33.333 0.00 0.00 0.00 4.55
3485 3641 3.002348 GGTTTCCGAATTAGAAGGATGCG 59.998 47.826 0.00 0.00 33.57 4.73
3513 3669 5.637006 TTGTACTCCAATACAATGCCAAC 57.363 39.130 0.00 0.00 39.56 3.77
3692 3848 7.708051 TGGACAAAATTCTTGAACGTTATGAA 58.292 30.769 0.00 6.67 0.00 2.57
3784 3940 8.607441 TGCTTTCGCTATTATGATGATTACTT 57.393 30.769 0.00 0.00 36.97 2.24
3864 4024 6.489675 CATTTCCATCTCCTTCACATAAACG 58.510 40.000 0.00 0.00 0.00 3.60
3869 4029 5.007039 CCATCTCCTTCACATAAACGTCATG 59.993 44.000 8.20 8.20 0.00 3.07
4132 4292 3.319137 TCTCGGATTTTGTCTCACCAG 57.681 47.619 0.00 0.00 0.00 4.00
4240 4400 5.927115 GGCAGATAAGATCGTTTAGTAAGGG 59.073 44.000 0.00 0.00 0.00 3.95
4367 4528 3.168292 AGAGATCATCGATGGGCATGTA 58.832 45.455 24.61 4.33 0.00 2.29
4379 4540 5.237996 CGATGGGCATGTATATTCATCATCC 59.762 44.000 12.74 7.20 32.88 3.51
4435 4596 8.226819 TCATAGCATGCAGTATATAGTACTCC 57.773 38.462 21.98 0.00 0.00 3.85
4436 4597 5.923733 AGCATGCAGTATATAGTACTCCC 57.076 43.478 21.98 0.00 0.00 4.30
4437 4598 5.584913 AGCATGCAGTATATAGTACTCCCT 58.415 41.667 21.98 0.00 0.00 4.20
4438 4599 5.654650 AGCATGCAGTATATAGTACTCCCTC 59.345 44.000 21.98 0.00 0.00 4.30
4439 4600 5.449314 GCATGCAGTATATAGTACTCCCTCG 60.449 48.000 14.21 0.00 0.00 4.63
4440 4601 5.238624 TGCAGTATATAGTACTCCCTCGT 57.761 43.478 0.00 0.00 0.00 4.18
4441 4602 5.628130 TGCAGTATATAGTACTCCCTCGTT 58.372 41.667 0.00 0.00 0.00 3.85
4442 4603 5.704515 TGCAGTATATAGTACTCCCTCGTTC 59.295 44.000 0.00 0.00 0.00 3.95
4443 4604 5.123661 GCAGTATATAGTACTCCCTCGTTCC 59.876 48.000 0.00 0.00 0.00 3.62
4444 4605 6.474630 CAGTATATAGTACTCCCTCGTTCCT 58.525 44.000 0.00 0.00 0.00 3.36
4445 4606 7.619050 CAGTATATAGTACTCCCTCGTTCCTA 58.381 42.308 0.00 0.00 0.00 2.94
4446 4607 8.099537 CAGTATATAGTACTCCCTCGTTCCTAA 58.900 40.741 0.00 0.00 0.00 2.69
4447 4608 8.664079 AGTATATAGTACTCCCTCGTTCCTAAA 58.336 37.037 0.00 0.00 0.00 1.85
4448 4609 9.460019 GTATATAGTACTCCCTCGTTCCTAAAT 57.540 37.037 0.00 0.00 0.00 1.40
4451 4612 8.953223 ATAGTACTCCCTCGTTCCTAAATATT 57.047 34.615 0.00 0.00 0.00 1.28
4452 4613 7.672122 AGTACTCCCTCGTTCCTAAATATTT 57.328 36.000 5.89 5.89 0.00 1.40
4453 4614 7.498443 AGTACTCCCTCGTTCCTAAATATTTG 58.502 38.462 11.05 1.40 0.00 2.32
4454 4615 6.309389 ACTCCCTCGTTCCTAAATATTTGT 57.691 37.500 11.05 0.00 0.00 2.83
4455 4616 6.346896 ACTCCCTCGTTCCTAAATATTTGTC 58.653 40.000 11.05 0.00 0.00 3.18
4456 4617 6.156429 ACTCCCTCGTTCCTAAATATTTGTCT 59.844 38.462 11.05 0.00 0.00 3.41
4457 4618 6.954232 TCCCTCGTTCCTAAATATTTGTCTT 58.046 36.000 11.05 0.00 0.00 3.01
4458 4619 7.399634 TCCCTCGTTCCTAAATATTTGTCTTT 58.600 34.615 11.05 0.00 0.00 2.52
4459 4620 7.551617 TCCCTCGTTCCTAAATATTTGTCTTTC 59.448 37.037 11.05 0.00 0.00 2.62
4460 4621 7.553044 CCCTCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
4461 4622 9.595823 CCTCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
4476 4637 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
4477 4638 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
4478 4639 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
4479 4640 9.213799 GTCTTTCTAGAGATTTCAACAAGTGAT 57.786 33.333 0.00 0.00 35.70 3.06
4480 4641 9.784531 TCTTTCTAGAGATTTCAACAAGTGATT 57.215 29.630 0.00 0.00 35.70 2.57
4483 4644 9.996554 TTCTAGAGATTTCAACAAGTGATTACA 57.003 29.630 0.00 0.00 35.70 2.41
4487 4648 8.873830 AGAGATTTCAACAAGTGATTACATACG 58.126 33.333 0.00 0.00 35.70 3.06
4488 4649 8.771920 AGATTTCAACAAGTGATTACATACGA 57.228 30.769 0.00 0.00 35.70 3.43
4489 4650 9.214957 AGATTTCAACAAGTGATTACATACGAA 57.785 29.630 0.00 0.00 35.70 3.85
4490 4651 9.478019 GATTTCAACAAGTGATTACATACGAAG 57.522 33.333 0.00 0.00 35.70 3.79
4491 4652 7.956420 TTCAACAAGTGATTACATACGAAGT 57.044 32.000 0.00 0.00 39.82 3.01
4492 4653 9.478768 TTTCAACAAGTGATTACATACGAAGTA 57.521 29.630 0.00 0.00 41.57 2.24
4493 4654 9.478768 TTCAACAAGTGATTACATACGAAGTAA 57.521 29.630 0.00 0.00 40.96 2.24
4508 4669 5.544621 ACGAAGTAAGTTTTAAATAGCGCG 58.455 37.500 0.00 0.00 41.94 6.86
4509 4670 4.429169 CGAAGTAAGTTTTAAATAGCGCGC 59.571 41.667 26.66 26.66 0.00 6.86
4510 4671 5.541098 AAGTAAGTTTTAAATAGCGCGCT 57.459 34.783 38.01 38.01 0.00 5.92
4511 4672 6.506827 CGAAGTAAGTTTTAAATAGCGCGCTA 60.507 38.462 39.72 39.72 0.00 4.26
4512 4673 6.651755 AGTAAGTTTTAAATAGCGCGCTAA 57.348 33.333 40.90 26.03 31.73 3.09
4513 4674 6.702897 AGTAAGTTTTAAATAGCGCGCTAAG 58.297 36.000 40.90 0.00 31.73 2.18
4514 4675 3.936661 AGTTTTAAATAGCGCGCTAAGC 58.063 40.909 40.90 27.92 43.95 3.09
4526 4687 1.856012 GCTAAGCATCTTAGCGGCG 59.144 57.895 18.95 0.51 38.12 6.46
4527 4688 1.560860 GCTAAGCATCTTAGCGGCGG 61.561 60.000 18.95 0.00 38.12 6.13
4528 4689 0.032130 CTAAGCATCTTAGCGGCGGA 59.968 55.000 9.78 0.00 40.15 5.54
4529 4690 0.249322 TAAGCATCTTAGCGGCGGAC 60.249 55.000 9.78 0.00 40.15 4.79
4530 4691 2.925162 AAGCATCTTAGCGGCGGACC 62.925 60.000 9.78 0.00 40.15 4.46
4531 4692 2.815308 CATCTTAGCGGCGGACCT 59.185 61.111 9.78 0.00 0.00 3.85
4532 4693 1.300233 CATCTTAGCGGCGGACCTC 60.300 63.158 9.78 0.00 0.00 3.85
4533 4694 1.455959 ATCTTAGCGGCGGACCTCT 60.456 57.895 9.78 0.00 34.60 3.69
4534 4695 1.043673 ATCTTAGCGGCGGACCTCTT 61.044 55.000 9.78 0.00 31.87 2.85
4535 4696 1.227002 CTTAGCGGCGGACCTCTTC 60.227 63.158 9.78 0.00 31.87 2.87
4536 4697 2.630592 CTTAGCGGCGGACCTCTTCC 62.631 65.000 9.78 0.00 41.75 3.46
4537 4698 3.949885 TAGCGGCGGACCTCTTCCA 62.950 63.158 9.78 0.00 46.29 3.53
4538 4699 4.388499 GCGGCGGACCTCTTCCAA 62.388 66.667 9.78 0.00 46.29 3.53
4539 4700 2.345991 CGGCGGACCTCTTCCAAA 59.654 61.111 0.00 0.00 46.29 3.28
4540 4701 1.078426 CGGCGGACCTCTTCCAAAT 60.078 57.895 0.00 0.00 46.29 2.32
4541 4702 1.369091 CGGCGGACCTCTTCCAAATG 61.369 60.000 0.00 0.00 46.29 2.32
4542 4703 1.657751 GGCGGACCTCTTCCAAATGC 61.658 60.000 0.00 0.00 46.29 3.56
4543 4704 0.678048 GCGGACCTCTTCCAAATGCT 60.678 55.000 0.00 0.00 46.29 3.79
4544 4705 1.406887 GCGGACCTCTTCCAAATGCTA 60.407 52.381 0.00 0.00 46.29 3.49
4545 4706 2.746472 GCGGACCTCTTCCAAATGCTAT 60.746 50.000 0.00 0.00 46.29 2.97
4546 4707 3.494398 GCGGACCTCTTCCAAATGCTATA 60.494 47.826 0.00 0.00 46.29 1.31
4547 4708 4.310769 CGGACCTCTTCCAAATGCTATAG 58.689 47.826 0.00 0.00 46.29 1.31
4548 4709 4.068599 GGACCTCTTCCAAATGCTATAGC 58.931 47.826 18.18 18.18 45.10 2.97
4549 4710 3.733337 ACCTCTTCCAAATGCTATAGCG 58.267 45.455 19.55 5.29 45.83 4.26
4550 4711 2.481952 CCTCTTCCAAATGCTATAGCGC 59.518 50.000 19.55 0.00 45.83 5.92
4551 4712 2.135139 TCTTCCAAATGCTATAGCGCG 58.865 47.619 19.55 0.00 45.83 6.86
4552 4713 0.586319 TTCCAAATGCTATAGCGCGC 59.414 50.000 26.66 26.66 45.83 6.86
4553 4714 0.249868 TCCAAATGCTATAGCGCGCT 60.250 50.000 38.01 38.01 45.83 5.92
4554 4715 1.000394 TCCAAATGCTATAGCGCGCTA 60.000 47.619 39.72 39.72 45.83 4.26
4555 4716 2.002586 CCAAATGCTATAGCGCGCTAT 58.997 47.619 44.16 44.16 45.83 2.97
4556 4717 2.416547 CCAAATGCTATAGCGCGCTATT 59.583 45.455 46.76 32.87 45.83 1.73
4557 4718 3.120199 CCAAATGCTATAGCGCGCTATTT 60.120 43.478 46.76 35.69 45.83 1.40
4558 4719 4.092821 CCAAATGCTATAGCGCGCTATTTA 59.907 41.667 46.76 34.35 45.83 1.40
4559 4720 5.390461 CCAAATGCTATAGCGCGCTATTTAA 60.390 40.000 46.76 33.89 45.83 1.52
4560 4721 5.856126 AATGCTATAGCGCGCTATTTAAA 57.144 34.783 46.76 32.21 45.83 1.52
4561 4722 5.856126 ATGCTATAGCGCGCTATTTAAAA 57.144 34.783 46.76 31.88 45.83 1.52
4562 4723 5.856126 TGCTATAGCGCGCTATTTAAAAT 57.144 34.783 46.76 31.12 45.83 1.82
4563 4724 5.617609 TGCTATAGCGCGCTATTTAAAATG 58.382 37.500 46.76 29.61 45.83 2.32
4564 4725 5.178623 TGCTATAGCGCGCTATTTAAAATGT 59.821 36.000 46.76 28.88 45.83 2.71
4565 4726 6.077838 GCTATAGCGCGCTATTTAAAATGTT 58.922 36.000 46.76 28.22 39.65 2.71
4566 4727 6.577427 GCTATAGCGCGCTATTTAAAATGTTT 59.423 34.615 46.76 27.75 39.65 2.83
4567 4728 6.732181 ATAGCGCGCTATTTAAAATGTTTG 57.268 33.333 40.32 0.00 35.92 2.93
4568 4729 4.481463 AGCGCGCTATTTAAAATGTTTGT 58.519 34.783 35.79 0.63 0.00 2.83
4569 4730 4.920927 AGCGCGCTATTTAAAATGTTTGTT 59.079 33.333 35.79 0.18 0.00 2.83
4570 4731 5.060446 AGCGCGCTATTTAAAATGTTTGTTC 59.940 36.000 35.79 0.00 0.00 3.18
4571 4732 5.164138 GCGCGCTATTTAAAATGTTTGTTCA 60.164 36.000 26.67 0.00 0.00 3.18
4572 4733 6.453659 GCGCGCTATTTAAAATGTTTGTTCAT 60.454 34.615 26.67 0.00 0.00 2.57
4573 4734 7.444245 CGCGCTATTTAAAATGTTTGTTCATT 58.556 30.769 5.56 0.00 39.35 2.57
4574 4735 7.949428 CGCGCTATTTAAAATGTTTGTTCATTT 59.051 29.630 5.56 0.00 45.94 2.32
4575 4736 9.039500 GCGCTATTTAAAATGTTTGTTCATTTG 57.961 29.630 0.00 0.00 44.10 2.32
4583 4744 6.676237 AATGTTTGTTCATTTGTTTGGACC 57.324 33.333 0.00 0.00 34.86 4.46
4584 4745 5.152623 TGTTTGTTCATTTGTTTGGACCA 57.847 34.783 0.00 0.00 0.00 4.02
4585 4746 5.551233 TGTTTGTTCATTTGTTTGGACCAA 58.449 33.333 1.69 1.69 0.00 3.67
4586 4747 5.997746 TGTTTGTTCATTTGTTTGGACCAAA 59.002 32.000 15.89 15.89 36.34 3.28
4587 4748 6.148480 TGTTTGTTCATTTGTTTGGACCAAAG 59.852 34.615 20.14 8.25 35.45 2.77
4588 4749 5.413309 TGTTCATTTGTTTGGACCAAAGT 57.587 34.783 20.14 4.29 35.45 2.66
4589 4750 5.415221 TGTTCATTTGTTTGGACCAAAGTC 58.585 37.500 20.14 10.01 42.73 3.01
4590 4751 5.186797 TGTTCATTTGTTTGGACCAAAGTCT 59.813 36.000 20.14 2.95 43.05 3.24
4591 4752 5.514274 TCATTTGTTTGGACCAAAGTCTC 57.486 39.130 20.14 8.94 43.05 3.36
4592 4753 5.200483 TCATTTGTTTGGACCAAAGTCTCT 58.800 37.500 20.14 1.91 43.05 3.10
4593 4754 5.656416 TCATTTGTTTGGACCAAAGTCTCTT 59.344 36.000 20.14 1.05 43.05 2.85
4594 4755 6.831353 TCATTTGTTTGGACCAAAGTCTCTTA 59.169 34.615 20.14 1.24 43.05 2.10
4595 4756 6.693315 TTTGTTTGGACCAAAGTCTCTTAG 57.307 37.500 20.14 0.00 43.05 2.18
4596 4757 4.134563 TGTTTGGACCAAAGTCTCTTAGC 58.865 43.478 20.14 5.76 43.05 3.09
4597 4758 2.743636 TGGACCAAAGTCTCTTAGCG 57.256 50.000 0.00 0.00 43.05 4.26
4598 4759 1.337823 TGGACCAAAGTCTCTTAGCGC 60.338 52.381 0.00 0.00 43.05 5.92
4599 4760 1.337823 GGACCAAAGTCTCTTAGCGCA 60.338 52.381 11.47 0.00 43.05 6.09
4600 4761 2.413837 GACCAAAGTCTCTTAGCGCAA 58.586 47.619 11.47 0.50 40.10 4.85
4601 4762 2.413453 GACCAAAGTCTCTTAGCGCAAG 59.587 50.000 11.47 11.67 40.10 4.01
4602 4763 2.037251 ACCAAAGTCTCTTAGCGCAAGA 59.963 45.455 11.47 15.40 41.10 3.02
4603 4764 2.413453 CCAAAGTCTCTTAGCGCAAGAC 59.587 50.000 11.47 16.26 38.39 3.01
4604 4765 2.371910 AAGTCTCTTAGCGCAAGACC 57.628 50.000 21.13 13.52 40.21 3.85
4605 4766 1.551452 AGTCTCTTAGCGCAAGACCT 58.449 50.000 21.13 14.93 40.21 3.85
4606 4767 1.896465 AGTCTCTTAGCGCAAGACCTT 59.104 47.619 21.13 7.87 40.21 3.50
4607 4768 2.300437 AGTCTCTTAGCGCAAGACCTTT 59.700 45.455 21.13 7.34 40.21 3.11
4608 4769 3.067833 GTCTCTTAGCGCAAGACCTTTT 58.932 45.455 11.47 0.00 38.39 2.27
4609 4770 3.067106 TCTCTTAGCGCAAGACCTTTTG 58.933 45.455 11.47 4.34 38.39 2.44
4610 4771 2.808543 CTCTTAGCGCAAGACCTTTTGT 59.191 45.455 11.47 0.00 38.39 2.83
4611 4772 3.994392 CTCTTAGCGCAAGACCTTTTGTA 59.006 43.478 11.47 0.00 38.39 2.41
4612 4773 4.382291 TCTTAGCGCAAGACCTTTTGTAA 58.618 39.130 11.47 0.00 38.39 2.41
4613 4774 4.817464 TCTTAGCGCAAGACCTTTTGTAAA 59.183 37.500 11.47 0.00 38.39 2.01
4614 4775 3.349488 AGCGCAAGACCTTTTGTAAAC 57.651 42.857 11.47 0.00 43.02 2.01
4615 4776 2.041244 GCGCAAGACCTTTTGTAAACG 58.959 47.619 0.30 0.00 43.02 3.60
4616 4777 2.041244 CGCAAGACCTTTTGTAAACGC 58.959 47.619 0.00 0.00 43.02 4.84
4617 4778 2.286772 CGCAAGACCTTTTGTAAACGCT 60.287 45.455 0.00 0.00 43.02 5.07
4618 4779 3.059461 CGCAAGACCTTTTGTAAACGCTA 60.059 43.478 0.00 0.00 43.02 4.26
4619 4780 4.378046 CGCAAGACCTTTTGTAAACGCTAT 60.378 41.667 0.00 0.00 43.02 2.97
4620 4781 5.163933 CGCAAGACCTTTTGTAAACGCTATA 60.164 40.000 0.00 0.00 43.02 1.31
4621 4782 6.248631 GCAAGACCTTTTGTAAACGCTATAG 58.751 40.000 0.00 0.00 0.00 1.31
4622 4783 6.248631 CAAGACCTTTTGTAAACGCTATAGC 58.751 40.000 15.09 15.09 37.78 2.97
4636 4797 3.326733 CTATAGCGTGCTATAGCGGAG 57.673 52.381 27.04 13.65 46.26 4.63
4637 4798 0.171455 ATAGCGTGCTATAGCGGAGC 59.829 55.000 22.98 22.98 45.83 4.70
4658 4819 5.934935 GCTATAGCGGGCTATTTAAAACA 57.065 39.130 17.49 0.00 39.65 2.83
4659 4820 5.928153 GCTATAGCGGGCTATTTAAAACAG 58.072 41.667 17.49 8.76 39.65 3.16
4660 4821 5.469084 GCTATAGCGGGCTATTTAAAACAGT 59.531 40.000 17.49 0.00 39.65 3.55
4661 4822 5.751243 ATAGCGGGCTATTTAAAACAGTG 57.249 39.130 7.36 0.00 35.92 3.66
4662 4823 3.681593 AGCGGGCTATTTAAAACAGTGA 58.318 40.909 0.00 0.00 0.00 3.41
4663 4824 3.689649 AGCGGGCTATTTAAAACAGTGAG 59.310 43.478 0.00 0.00 0.00 3.51
4664 4825 3.439129 GCGGGCTATTTAAAACAGTGAGT 59.561 43.478 0.00 0.00 0.00 3.41
4665 4826 4.632688 GCGGGCTATTTAAAACAGTGAGTA 59.367 41.667 0.00 0.00 0.00 2.59
4666 4827 5.122711 GCGGGCTATTTAAAACAGTGAGTAA 59.877 40.000 0.00 0.00 0.00 2.24
4667 4828 6.348704 GCGGGCTATTTAAAACAGTGAGTAAA 60.349 38.462 0.00 0.00 0.00 2.01
4668 4829 7.586747 CGGGCTATTTAAAACAGTGAGTAAAA 58.413 34.615 0.00 0.00 0.00 1.52
4669 4830 8.241367 CGGGCTATTTAAAACAGTGAGTAAAAT 58.759 33.333 0.00 0.77 0.00 1.82
4670 4831 9.353999 GGGCTATTTAAAACAGTGAGTAAAATG 57.646 33.333 0.00 0.00 0.00 2.32
4679 4840 8.682936 AAACAGTGAGTAAAATGAGTGAATCT 57.317 30.769 0.00 0.00 0.00 2.40
4680 4841 9.778741 AAACAGTGAGTAAAATGAGTGAATCTA 57.221 29.630 0.00 0.00 0.00 1.98
4681 4842 8.764524 ACAGTGAGTAAAATGAGTGAATCTAC 57.235 34.615 0.00 0.00 0.00 2.59
4682 4843 8.367911 ACAGTGAGTAAAATGAGTGAATCTACA 58.632 33.333 0.00 0.00 0.00 2.74
4683 4844 9.376075 CAGTGAGTAAAATGAGTGAATCTACAT 57.624 33.333 0.00 0.00 0.00 2.29
4684 4845 9.950496 AGTGAGTAAAATGAGTGAATCTACATT 57.050 29.630 0.00 0.00 34.99 2.71
4721 4882 5.467705 GGATACATCCGTATGTTGTAGTCC 58.532 45.833 0.00 0.00 44.07 3.85
4722 4883 5.010314 GGATACATCCGTATGTTGTAGTCCA 59.990 44.000 0.00 0.00 44.07 4.02
4723 4884 6.295123 GGATACATCCGTATGTTGTAGTCCAT 60.295 42.308 0.00 0.00 44.07 3.41
4724 4885 7.094075 GGATACATCCGTATGTTGTAGTCCATA 60.094 40.741 0.00 0.00 44.07 2.74
4725 4886 6.665992 ACATCCGTATGTTGTAGTCCATAT 57.334 37.500 0.00 0.00 44.07 1.78
4726 4887 6.455647 ACATCCGTATGTTGTAGTCCATATG 58.544 40.000 0.00 0.00 44.07 1.78
4727 4888 6.266786 ACATCCGTATGTTGTAGTCCATATGA 59.733 38.462 3.65 0.00 44.07 2.15
4728 4889 6.718522 TCCGTATGTTGTAGTCCATATGAA 57.281 37.500 3.65 0.00 34.07 2.57
4729 4890 7.297936 TCCGTATGTTGTAGTCCATATGAAT 57.702 36.000 3.65 0.00 34.07 2.57
4730 4891 7.151976 TCCGTATGTTGTAGTCCATATGAATG 58.848 38.462 3.65 0.00 34.07 2.67
4731 4892 6.929049 CCGTATGTTGTAGTCCATATGAATGT 59.071 38.462 3.65 0.00 34.07 2.71
4732 4893 7.116376 CCGTATGTTGTAGTCCATATGAATGTC 59.884 40.741 3.65 0.00 34.07 3.06
4733 4894 7.867909 CGTATGTTGTAGTCCATATGAATGTCT 59.132 37.037 3.65 0.00 34.07 3.41
4736 4897 8.533569 TGTTGTAGTCCATATGAATGTCTAGA 57.466 34.615 3.65 0.00 0.00 2.43
4737 4898 8.977412 TGTTGTAGTCCATATGAATGTCTAGAA 58.023 33.333 3.65 0.00 0.00 2.10
4738 4899 9.817809 GTTGTAGTCCATATGAATGTCTAGAAA 57.182 33.333 3.65 0.00 30.57 2.52
4740 4901 9.421399 TGTAGTCCATATGAATGTCTAGAAAGA 57.579 33.333 3.65 0.00 0.00 2.52
4760 4921 9.780186 AGAAAGATAAATATTTAGGAACGGAGG 57.220 33.333 13.15 0.00 0.00 4.30
4761 4922 8.919777 AAAGATAAATATTTAGGAACGGAGGG 57.080 34.615 13.15 0.00 0.00 4.30
4762 4923 7.867160 AGATAAATATTTAGGAACGGAGGGA 57.133 36.000 13.15 0.00 0.00 4.20
4763 4924 7.908453 AGATAAATATTTAGGAACGGAGGGAG 58.092 38.462 13.15 0.00 0.00 4.30
4977 5139 6.531240 ACAAAATAGCCTTTGTATTCGCATTG 59.469 34.615 7.24 0.00 45.44 2.82
5081 5244 4.718961 ACATGAACTTGGCTTGTAAGAGT 58.281 39.130 0.00 0.00 0.00 3.24
5851 6128 8.927675 TTTTATGGTAAACAAGTAGACATGGT 57.072 30.769 0.00 0.00 0.00 3.55
5859 6136 4.985538 ACAAGTAGACATGGTTTGATGGT 58.014 39.130 0.00 0.00 0.00 3.55
6294 6572 8.159344 AGCATCTTATGGTAAATTTCTGCTAC 57.841 34.615 0.00 0.00 39.58 3.58
6328 6606 8.311109 TGTCTGCTGTTCTAGTATCATTGTTTA 58.689 33.333 0.00 0.00 0.00 2.01
6350 6628 4.305989 TGACAAAATGCAAGAAGTGACC 57.694 40.909 0.00 0.00 0.00 4.02
6413 6691 6.012858 TGAACTTCTCCTAAAATGGAAGCCTA 60.013 38.462 0.00 0.00 38.81 3.93
6419 6697 8.747538 TCTCCTAAAATGGAAGCCTAATTTAC 57.252 34.615 0.00 0.00 35.43 2.01
6423 6701 8.557029 CCTAAAATGGAAGCCTAATTTACGTAG 58.443 37.037 0.00 0.00 0.00 3.51
6425 6703 4.748277 TGGAAGCCTAATTTACGTAGCT 57.252 40.909 0.00 0.00 0.00 3.32
6459 6737 3.929610 GTCTATAAGGAGCGCATGGATTC 59.070 47.826 11.47 0.00 0.00 2.52
6620 6898 8.164733 TGTTCTTTTCCACATTACCTTACCATA 58.835 33.333 0.00 0.00 0.00 2.74
6720 6998 5.488341 ACGTTCATTCTTGTACTTGCCTAT 58.512 37.500 0.00 0.00 0.00 2.57
6864 7142 8.741101 TTTGAATTCTGAATAATTGTGGAACG 57.259 30.769 7.05 0.00 42.39 3.95
6882 7160 4.676924 GGAACGAGCATATAATTTTGCAGC 59.323 41.667 9.49 0.00 41.35 5.25
7214 7518 4.678509 TCCGATCATTTGTAACTGCAAC 57.321 40.909 0.00 0.00 0.00 4.17
7571 7881 1.570857 CCAAGCCCAGACCACCCATA 61.571 60.000 0.00 0.00 0.00 2.74
7664 7974 1.308069 CCATGCCCCTCAACAGAACG 61.308 60.000 0.00 0.00 0.00 3.95
8089 8404 0.918619 GCAAACATGCATGCTTAGCG 59.081 50.000 26.53 10.08 39.46 4.26
8149 8464 6.321435 GGCTTAATTATGGAAAGCTAGGTTGT 59.679 38.462 8.16 0.00 44.00 3.32
8298 8613 1.139853 CAACATGGAGGCCCTAGAGAC 59.860 57.143 0.00 0.00 0.00 3.36
8322 8637 1.596727 GCCATCTCTTCGTGAAGATGC 59.403 52.381 12.39 9.43 45.40 3.91
8348 8663 9.896645 CATATACATATGGTTCTAGAATTGGCT 57.103 33.333 8.75 0.00 37.16 4.75
8380 8695 1.892441 AACTCCCTCCTCCTCTCCCC 61.892 65.000 0.00 0.00 0.00 4.81
8516 8836 2.356793 GATCTGGGATCTGCGGCG 60.357 66.667 0.51 0.51 0.00 6.46
8517 8837 3.157217 GATCTGGGATCTGCGGCGT 62.157 63.158 9.37 0.00 0.00 5.68
8610 8950 2.283101 GTCATGGGTGGCTGCCAA 60.283 61.111 25.23 8.73 34.18 4.52
8744 9116 2.668632 GGTGGCACCTCCGATCAA 59.331 61.111 29.22 0.00 37.80 2.57
8749 9121 2.115427 TGGCACCTCCGATCAAATCTA 58.885 47.619 0.00 0.00 37.80 1.98
8757 9129 5.600484 ACCTCCGATCAAATCTATTCTGACT 59.400 40.000 0.00 0.00 0.00 3.41
8759 9131 6.239148 CCTCCGATCAAATCTATTCTGACTGA 60.239 42.308 0.00 0.00 0.00 3.41
8852 9224 2.970639 GTCGTCTGGCACCAGCTA 59.029 61.111 12.03 0.00 43.31 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 1.064240 TGCATCTTCATGAGGGTGCAT 60.064 47.619 34.39 6.31 40.20 3.96
61 62 1.733526 GGTGTGCCTTGTTGGTGAC 59.266 57.895 0.00 0.00 38.35 3.67
70 71 2.433436 GAAATAGGTTCGGTGTGCCTT 58.567 47.619 0.00 0.00 34.07 4.35
119 121 2.217510 AGAACGTAGGCCTCTCTTCA 57.782 50.000 9.68 0.00 0.00 3.02
120 122 2.358582 GGTAGAACGTAGGCCTCTCTTC 59.641 54.545 9.68 8.39 0.00 2.87
129 150 5.936686 TCATAATCGAGGTAGAACGTAGG 57.063 43.478 0.00 0.00 0.00 3.18
204 225 3.947612 ATTAGGGTCGTAGTCTGGAGA 57.052 47.619 0.00 0.00 0.00 3.71
250 271 9.265901 GCATATTATAAGTAGATACCATGCCTG 57.734 37.037 0.00 0.00 29.93 4.85
272 293 9.489084 AATTCAACGAAATACTAGCATAGCATA 57.511 29.630 0.00 0.00 44.39 3.14
273 294 7.969536 ATTCAACGAAATACTAGCATAGCAT 57.030 32.000 0.00 0.00 44.39 3.79
274 295 7.786178 AATTCAACGAAATACTAGCATAGCA 57.214 32.000 0.00 0.00 44.39 3.49
275 296 9.503427 AAAAATTCAACGAAATACTAGCATAGC 57.497 29.630 0.00 0.00 44.39 2.97
349 370 6.385537 AGTTCAGCAACGTACTAATTAACG 57.614 37.500 7.90 7.90 44.47 3.18
362 383 7.698836 AATGACAACATTTAAGTTCAGCAAC 57.301 32.000 0.00 0.00 43.17 4.17
479 501 1.202818 ACTGGAACCTCTTTGACTGGC 60.203 52.381 0.00 0.00 0.00 4.85
524 546 4.866508 TCTCCGCTTTCTTGTCTCTTAA 57.133 40.909 0.00 0.00 0.00 1.85
564 586 5.631119 CCCCTCTTCACTTCTTTTCCTTAA 58.369 41.667 0.00 0.00 0.00 1.85
565 587 4.506802 GCCCCTCTTCACTTCTTTTCCTTA 60.507 45.833 0.00 0.00 0.00 2.69
711 744 3.012959 TCTCCCTCTCTCCCTATTGTGTT 59.987 47.826 0.00 0.00 0.00 3.32
713 746 3.117322 TCTCTCCCTCTCTCCCTATTGTG 60.117 52.174 0.00 0.00 0.00 3.33
717 750 2.358258 CCTCTCTCCCTCTCTCCCTAT 58.642 57.143 0.00 0.00 0.00 2.57
718 751 1.700907 CCCTCTCTCCCTCTCTCCCTA 60.701 61.905 0.00 0.00 0.00 3.53
720 753 0.996762 TCCCTCTCTCCCTCTCTCCC 60.997 65.000 0.00 0.00 0.00 4.30
721 754 0.478507 CTCCCTCTCTCCCTCTCTCC 59.521 65.000 0.00 0.00 0.00 3.71
722 755 1.143073 GTCTCCCTCTCTCCCTCTCTC 59.857 61.905 0.00 0.00 0.00 3.20
729 762 1.564348 AGTCTCAGTCTCCCTCTCTCC 59.436 57.143 0.00 0.00 0.00 3.71
737 770 0.170116 CACGCTCAGTCTCAGTCTCC 59.830 60.000 0.00 0.00 0.00 3.71
860 893 2.188818 AAGATGGGAGAGGAAGAGGG 57.811 55.000 0.00 0.00 0.00 4.30
1209 1244 2.835580 ATGGATCGAGATGGAAGCTG 57.164 50.000 0.00 0.00 22.26 4.24
1315 1367 4.087892 GCTGGCGGAGGAAGAGCA 62.088 66.667 0.00 0.00 0.00 4.26
1472 1526 1.474143 GCTGGGGCTAGCAGTAGAAAG 60.474 57.143 18.24 4.89 43.17 2.62
1523 1577 3.490249 GCAGCAGCAGCATAAAATCATCA 60.490 43.478 4.63 0.00 45.49 3.07
1595 1649 1.202582 GAAGACGAGCCAGCTAGTGAA 59.797 52.381 10.25 0.00 32.22 3.18
1655 1709 0.537188 GGATCAGTCGGAGGCAAGAA 59.463 55.000 0.00 0.00 0.00 2.52
1753 1862 9.803315 GAAAGGGACAAAATTCATCTAATTACC 57.197 33.333 0.00 0.00 36.76 2.85
1766 1875 5.147032 TGTGGATGAAGAAAGGGACAAAAT 58.853 37.500 0.00 0.00 0.00 1.82
1914 2027 0.676151 GCCCAGCTCACTTCTTGGAG 60.676 60.000 0.00 0.00 0.00 3.86
1993 2117 5.140747 TGTTTAGAGAGGCAGAAGAAGAC 57.859 43.478 0.00 0.00 0.00 3.01
2033 2157 0.852777 CGTAGCGATGTACCATGCAC 59.147 55.000 0.00 0.00 0.00 4.57
2155 2280 6.850752 AGGAGTAAGAGGAAAGAGAAGAAG 57.149 41.667 0.00 0.00 0.00 2.85
2156 2281 8.903059 AATAGGAGTAAGAGGAAAGAGAAGAA 57.097 34.615 0.00 0.00 0.00 2.52
2157 2282 8.903059 AAATAGGAGTAAGAGGAAAGAGAAGA 57.097 34.615 0.00 0.00 0.00 2.87
2190 2316 5.046288 AGCATCAAAGAGAAATAGAGGGG 57.954 43.478 0.00 0.00 0.00 4.79
2197 2323 5.707066 AGAGGGTAGCATCAAAGAGAAAT 57.293 39.130 9.49 0.00 0.00 2.17
2200 2326 4.219115 CCTAGAGGGTAGCATCAAAGAGA 58.781 47.826 9.49 0.00 0.00 3.10
2261 2396 2.687700 AGCTGTGAAGCTGGTCTATG 57.312 50.000 0.00 0.00 44.44 2.23
2313 2448 5.594926 CAAATTGCTCCCTATCAATGAACC 58.405 41.667 0.00 0.00 33.61 3.62
2383 2518 7.013655 AATGGTTTCATCATTAGCGATTTAGCT 59.986 33.333 0.00 0.00 40.73 3.32
2384 2519 6.060028 TGGTTTCATCATTAGCGATTTAGC 57.940 37.500 0.00 0.00 37.41 3.09
2385 2520 8.961092 CAAATGGTTTCATCATTAGCGATTTAG 58.039 33.333 0.00 0.00 34.15 1.85
2386 2521 7.434897 GCAAATGGTTTCATCATTAGCGATTTA 59.565 33.333 0.00 0.00 34.15 1.40
2515 2651 4.935352 TGAAAACAGGCATAAAAGTGCT 57.065 36.364 0.00 0.00 44.45 4.40
2564 2700 2.949451 AGAGATGAGACGCAACGAAT 57.051 45.000 0.00 0.00 0.00 3.34
2566 2702 2.229062 AGAAAGAGATGAGACGCAACGA 59.771 45.455 0.00 0.00 0.00 3.85
2625 2764 7.611770 TCTTGTATATATGTGGCACATAGGTC 58.388 38.462 35.36 26.08 43.51 3.85
2651 2791 1.305633 CCAGAGAGAGGCCAGGTCA 60.306 63.158 5.01 0.00 0.00 4.02
2740 2880 6.924913 AGAGATGTGCAGCCTATTTATCTA 57.075 37.500 0.00 0.00 0.00 1.98
2852 2992 3.715628 ATGCGCAACAAAAGAAGAAGT 57.284 38.095 17.11 0.00 0.00 3.01
3093 3240 9.754382 GTGGATAATGATTGAAGCATTACAATT 57.246 29.630 16.92 2.71 40.02 2.32
3094 3241 8.916062 TGTGGATAATGATTGAAGCATTACAAT 58.084 29.630 16.92 4.03 40.02 2.71
3095 3242 8.291191 TGTGGATAATGATTGAAGCATTACAA 57.709 30.769 16.92 4.51 40.02 2.41
3096 3243 7.878547 TGTGGATAATGATTGAAGCATTACA 57.121 32.000 16.92 10.92 40.02 2.41
3097 3244 9.023967 GTTTGTGGATAATGATTGAAGCATTAC 57.976 33.333 16.92 8.59 40.02 1.89
3226 3376 1.208614 GCCAGCTTCAAAGAGCACG 59.791 57.895 0.00 0.00 45.12 5.34
3278 3430 5.417580 TGCTCCTTTACTGTTCAAAGTGTTT 59.582 36.000 3.21 0.00 32.23 2.83
3367 3519 0.882042 GAGCCACTATGCCATGGTCG 60.882 60.000 14.67 1.94 38.34 4.79
3369 3521 0.921896 AAGAGCCACTATGCCATGGT 59.078 50.000 14.67 0.00 38.34 3.55
3394 3546 4.614555 TGCAATAGCTTATCACAAACCG 57.385 40.909 0.00 0.00 42.74 4.44
3596 3752 1.550072 CAAATCCCGGTCCTTTGCAAT 59.450 47.619 0.00 0.00 0.00 3.56
3646 3802 2.098614 TGCTGCAAGGAAAACTCACAA 58.901 42.857 0.00 0.00 0.00 3.33
3692 3848 4.184629 CCTTTTCAGCATAAGAGTAGCGT 58.815 43.478 0.00 0.00 0.00 5.07
3784 3940 9.022915 CGATTCAAAATATATGAAAGCAGCAAA 57.977 29.630 7.67 0.00 39.98 3.68
3864 4024 7.440523 ACAAGAAGGTTAATTCAGACATGAC 57.559 36.000 0.00 0.00 34.35 3.06
3869 4029 6.918022 CCAACAACAAGAAGGTTAATTCAGAC 59.082 38.462 0.00 0.00 0.00 3.51
4132 4292 4.615912 GCATCCACACATTACAAGTTGTCC 60.616 45.833 12.82 0.00 0.00 4.02
4320 4481 3.393687 TCATCTACCTAGGTGGCCAAAT 58.606 45.455 25.33 8.00 40.22 2.32
4379 4540 9.987272 TTCTATGTATAGTGGACATCATTCAAG 57.013 33.333 0.00 0.00 38.47 3.02
4429 4590 7.270779 ACAAATATTTAGGAACGAGGGAGTAC 58.729 38.462 0.00 0.00 0.00 2.73
4430 4591 7.343833 AGACAAATATTTAGGAACGAGGGAGTA 59.656 37.037 0.00 0.00 0.00 2.59
4431 4592 6.156429 AGACAAATATTTAGGAACGAGGGAGT 59.844 38.462 0.00 0.00 0.00 3.85
4432 4593 6.583562 AGACAAATATTTAGGAACGAGGGAG 58.416 40.000 0.00 0.00 0.00 4.30
4433 4594 6.555463 AGACAAATATTTAGGAACGAGGGA 57.445 37.500 0.00 0.00 0.00 4.20
4434 4595 7.553044 AGAAAGACAAATATTTAGGAACGAGGG 59.447 37.037 0.00 0.00 0.00 4.30
4435 4596 8.494016 AGAAAGACAAATATTTAGGAACGAGG 57.506 34.615 0.00 0.00 0.00 4.63
4450 4611 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
4451 4612 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
4452 4613 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
4453 4614 8.594881 TCACTTGTTGAAATCTCTAGAAAGAC 57.405 34.615 0.00 0.00 0.00 3.01
4454 4615 9.784531 AATCACTTGTTGAAATCTCTAGAAAGA 57.215 29.630 0.00 0.00 37.92 2.52
4457 4618 9.996554 TGTAATCACTTGTTGAAATCTCTAGAA 57.003 29.630 0.00 0.00 37.92 2.10
4461 4622 8.873830 CGTATGTAATCACTTGTTGAAATCTCT 58.126 33.333 0.00 0.00 37.92 3.10
4462 4623 8.869897 TCGTATGTAATCACTTGTTGAAATCTC 58.130 33.333 0.00 0.00 37.92 2.75
4463 4624 8.771920 TCGTATGTAATCACTTGTTGAAATCT 57.228 30.769 0.00 0.00 37.92 2.40
4464 4625 9.478019 CTTCGTATGTAATCACTTGTTGAAATC 57.522 33.333 0.00 0.00 37.92 2.17
4465 4626 8.999431 ACTTCGTATGTAATCACTTGTTGAAAT 58.001 29.630 0.00 0.00 37.92 2.17
4466 4627 8.373048 ACTTCGTATGTAATCACTTGTTGAAA 57.627 30.769 0.00 0.00 37.92 2.69
4467 4628 7.956420 ACTTCGTATGTAATCACTTGTTGAA 57.044 32.000 0.00 0.00 37.92 2.69
4468 4629 9.135843 CTTACTTCGTATGTAATCACTTGTTGA 57.864 33.333 0.00 0.00 39.11 3.18
4469 4630 8.922676 ACTTACTTCGTATGTAATCACTTGTTG 58.077 33.333 0.00 0.00 30.73 3.33
4470 4631 9.485206 AACTTACTTCGTATGTAATCACTTGTT 57.515 29.630 0.00 0.00 30.73 2.83
4471 4632 9.485206 AAACTTACTTCGTATGTAATCACTTGT 57.515 29.630 0.00 0.00 30.73 3.16
4481 4642 8.112449 GCGCTATTTAAAACTTACTTCGTATGT 58.888 33.333 0.00 0.00 0.00 2.29
4482 4643 7.314944 CGCGCTATTTAAAACTTACTTCGTATG 59.685 37.037 5.56 0.00 0.00 2.39
4483 4644 7.332530 CGCGCTATTTAAAACTTACTTCGTAT 58.667 34.615 5.56 0.00 0.00 3.06
4484 4645 6.685767 CGCGCTATTTAAAACTTACTTCGTA 58.314 36.000 5.56 0.00 0.00 3.43
4485 4646 5.544621 CGCGCTATTTAAAACTTACTTCGT 58.455 37.500 5.56 0.00 0.00 3.85
4486 4647 4.429169 GCGCGCTATTTAAAACTTACTTCG 59.571 41.667 26.67 0.00 0.00 3.79
4487 4648 5.557388 AGCGCGCTATTTAAAACTTACTTC 58.443 37.500 35.79 0.00 0.00 3.01
4488 4649 5.541098 AGCGCGCTATTTAAAACTTACTT 57.459 34.783 35.79 0.63 0.00 2.24
4489 4650 6.651755 TTAGCGCGCTATTTAAAACTTACT 57.348 33.333 38.51 12.56 0.00 2.24
4490 4651 5.391721 GCTTAGCGCGCTATTTAAAACTTAC 59.608 40.000 38.51 14.40 0.00 2.34
4491 4652 5.063691 TGCTTAGCGCGCTATTTAAAACTTA 59.936 36.000 38.51 19.93 43.27 2.24
4492 4653 4.142773 TGCTTAGCGCGCTATTTAAAACTT 60.143 37.500 38.51 13.94 43.27 2.66
4493 4654 3.372822 TGCTTAGCGCGCTATTTAAAACT 59.627 39.130 38.51 14.50 43.27 2.66
4494 4655 3.676540 TGCTTAGCGCGCTATTTAAAAC 58.323 40.909 38.51 22.00 43.27 2.43
4495 4656 4.272504 AGATGCTTAGCGCGCTATTTAAAA 59.727 37.500 38.51 24.43 43.27 1.52
4496 4657 3.807622 AGATGCTTAGCGCGCTATTTAAA 59.192 39.130 38.51 25.16 43.27 1.52
4497 4658 3.390135 AGATGCTTAGCGCGCTATTTAA 58.610 40.909 38.51 25.53 43.27 1.52
4498 4659 3.026630 AGATGCTTAGCGCGCTATTTA 57.973 42.857 38.51 26.65 43.27 1.40
4499 4660 1.871080 AGATGCTTAGCGCGCTATTT 58.129 45.000 38.51 23.54 43.27 1.40
4500 4661 1.871080 AAGATGCTTAGCGCGCTATT 58.129 45.000 38.51 26.01 43.27 1.73
4501 4662 2.600731 CTAAGATGCTTAGCGCGCTAT 58.399 47.619 38.51 26.50 43.27 2.97
4502 4663 1.930817 GCTAAGATGCTTAGCGCGCTA 60.931 52.381 35.48 35.48 43.27 4.26
4503 4664 1.218230 GCTAAGATGCTTAGCGCGCT 61.218 55.000 38.01 38.01 43.27 5.92
4504 4665 1.202816 GCTAAGATGCTTAGCGCGC 59.797 57.895 26.66 26.66 43.27 6.86
4508 4669 1.560860 CCGCCGCTAAGATGCTTAGC 61.561 60.000 22.75 22.75 42.82 3.09
4509 4670 0.032130 TCCGCCGCTAAGATGCTTAG 59.968 55.000 9.30 9.30 0.00 2.18
4510 4671 0.249322 GTCCGCCGCTAAGATGCTTA 60.249 55.000 0.00 0.00 0.00 3.09
4511 4672 1.521681 GTCCGCCGCTAAGATGCTT 60.522 57.895 0.00 0.00 0.00 3.91
4512 4673 2.107141 GTCCGCCGCTAAGATGCT 59.893 61.111 0.00 0.00 0.00 3.79
4513 4674 2.967615 GGTCCGCCGCTAAGATGC 60.968 66.667 0.00 0.00 0.00 3.91
4514 4675 1.300233 GAGGTCCGCCGCTAAGATG 60.300 63.158 0.00 0.00 40.50 2.90
4515 4676 1.043673 AAGAGGTCCGCCGCTAAGAT 61.044 55.000 0.00 0.00 44.34 2.40
4516 4677 1.664321 GAAGAGGTCCGCCGCTAAGA 61.664 60.000 0.00 0.00 44.34 2.10
4517 4678 1.227002 GAAGAGGTCCGCCGCTAAG 60.227 63.158 0.00 0.00 44.34 2.18
4518 4679 2.718073 GGAAGAGGTCCGCCGCTAA 61.718 63.158 0.00 0.00 44.34 3.09
4519 4680 3.145551 GGAAGAGGTCCGCCGCTA 61.146 66.667 0.00 0.00 44.34 4.26
4525 4686 5.330561 GCTATAGCATTTGGAAGAGGTCCG 61.331 50.000 20.01 0.00 44.91 4.79
4526 4687 4.068599 GCTATAGCATTTGGAAGAGGTCC 58.931 47.826 20.01 0.00 43.38 4.46
4527 4688 3.743396 CGCTATAGCATTTGGAAGAGGTC 59.257 47.826 23.99 0.00 42.21 3.85
4528 4689 3.733337 CGCTATAGCATTTGGAAGAGGT 58.267 45.455 23.99 0.00 42.21 3.85
4529 4690 2.481952 GCGCTATAGCATTTGGAAGAGG 59.518 50.000 23.99 4.68 42.21 3.69
4530 4691 2.156504 CGCGCTATAGCATTTGGAAGAG 59.843 50.000 23.99 5.18 42.21 2.85
4531 4692 2.135139 CGCGCTATAGCATTTGGAAGA 58.865 47.619 23.99 0.00 42.21 2.87
4532 4693 1.398960 GCGCGCTATAGCATTTGGAAG 60.399 52.381 26.67 6.58 42.21 3.46
4533 4694 0.586319 GCGCGCTATAGCATTTGGAA 59.414 50.000 26.67 0.00 42.21 3.53
4534 4695 0.249868 AGCGCGCTATAGCATTTGGA 60.250 50.000 35.79 0.00 42.21 3.53
4535 4696 1.428448 TAGCGCGCTATAGCATTTGG 58.572 50.000 35.48 8.71 42.21 3.28
4536 4697 3.729526 AATAGCGCGCTATAGCATTTG 57.270 42.857 43.81 9.08 42.21 2.32
4537 4698 5.856126 TTAAATAGCGCGCTATAGCATTT 57.144 34.783 43.81 36.41 42.21 2.32
4538 4699 5.856126 TTTAAATAGCGCGCTATAGCATT 57.144 34.783 43.81 35.46 42.21 3.56
4539 4700 5.856126 TTTTAAATAGCGCGCTATAGCAT 57.144 34.783 43.81 32.14 42.21 3.79
4540 4701 5.178623 ACATTTTAAATAGCGCGCTATAGCA 59.821 36.000 43.81 30.83 42.21 3.49
4541 4702 5.618561 ACATTTTAAATAGCGCGCTATAGC 58.381 37.500 43.81 15.09 38.20 2.97
4542 4703 7.586300 ACAAACATTTTAAATAGCGCGCTATAG 59.414 33.333 43.81 29.40 38.20 1.31
4543 4704 7.411274 ACAAACATTTTAAATAGCGCGCTATA 58.589 30.769 43.81 31.73 38.20 1.31
4544 4705 6.262601 ACAAACATTTTAAATAGCGCGCTAT 58.737 32.000 40.32 40.32 40.63 2.97
4545 4706 5.632959 ACAAACATTTTAAATAGCGCGCTA 58.367 33.333 39.72 39.72 0.00 4.26
4546 4707 4.481463 ACAAACATTTTAAATAGCGCGCT 58.519 34.783 38.01 38.01 0.00 5.92
4547 4708 4.816277 ACAAACATTTTAAATAGCGCGC 57.184 36.364 26.66 26.66 0.00 6.86
4548 4709 6.369326 TGAACAAACATTTTAAATAGCGCG 57.631 33.333 0.00 0.00 0.00 6.86
4549 4710 9.039500 CAAATGAACAAACATTTTAAATAGCGC 57.961 29.630 0.00 0.00 44.63 5.92
4557 4718 8.669243 GGTCCAAACAAATGAACAAACATTTTA 58.331 29.630 0.00 0.00 44.63 1.52
4558 4719 7.175641 TGGTCCAAACAAATGAACAAACATTTT 59.824 29.630 0.00 0.00 44.63 1.82
4559 4720 6.656693 TGGTCCAAACAAATGAACAAACATTT 59.343 30.769 0.00 0.00 46.85 2.32
4560 4721 6.176183 TGGTCCAAACAAATGAACAAACATT 58.824 32.000 0.00 0.00 41.43 2.71
4561 4722 5.738909 TGGTCCAAACAAATGAACAAACAT 58.261 33.333 0.00 0.00 0.00 2.71
4562 4723 5.152623 TGGTCCAAACAAATGAACAAACA 57.847 34.783 0.00 0.00 0.00 2.83
4563 4724 6.148645 ACTTTGGTCCAAACAAATGAACAAAC 59.851 34.615 13.26 0.00 39.91 2.93
4564 4725 6.234177 ACTTTGGTCCAAACAAATGAACAAA 58.766 32.000 13.26 0.00 41.86 2.83
4565 4726 5.799213 ACTTTGGTCCAAACAAATGAACAA 58.201 33.333 13.26 0.00 37.22 2.83
4566 4727 5.186797 AGACTTTGGTCCAAACAAATGAACA 59.813 36.000 13.26 0.00 43.05 3.18
4567 4728 5.660460 AGACTTTGGTCCAAACAAATGAAC 58.340 37.500 13.26 4.31 43.05 3.18
4568 4729 5.656416 AGAGACTTTGGTCCAAACAAATGAA 59.344 36.000 13.26 0.00 43.05 2.57
4569 4730 5.200483 AGAGACTTTGGTCCAAACAAATGA 58.800 37.500 13.26 0.00 43.05 2.57
4570 4731 5.520376 AGAGACTTTGGTCCAAACAAATG 57.480 39.130 13.26 6.01 43.05 2.32
4571 4732 6.239036 GCTAAGAGACTTTGGTCCAAACAAAT 60.239 38.462 13.26 0.00 43.05 2.32
4572 4733 5.067283 GCTAAGAGACTTTGGTCCAAACAAA 59.933 40.000 13.26 0.00 43.05 2.83
4573 4734 4.578928 GCTAAGAGACTTTGGTCCAAACAA 59.421 41.667 13.26 0.00 43.05 2.83
4574 4735 4.134563 GCTAAGAGACTTTGGTCCAAACA 58.865 43.478 13.26 0.00 43.05 2.83
4575 4736 3.186613 CGCTAAGAGACTTTGGTCCAAAC 59.813 47.826 13.26 4.96 43.05 2.93
4576 4737 3.399330 CGCTAAGAGACTTTGGTCCAAA 58.601 45.455 16.26 16.26 43.05 3.28
4577 4738 2.870435 GCGCTAAGAGACTTTGGTCCAA 60.870 50.000 0.00 0.00 43.05 3.53
4578 4739 1.337823 GCGCTAAGAGACTTTGGTCCA 60.338 52.381 0.00 0.00 43.05 4.02
4579 4740 1.337823 TGCGCTAAGAGACTTTGGTCC 60.338 52.381 9.73 0.00 43.05 4.46
4580 4741 2.080286 TGCGCTAAGAGACTTTGGTC 57.920 50.000 9.73 0.00 42.41 4.02
4581 4742 2.037251 TCTTGCGCTAAGAGACTTTGGT 59.963 45.455 9.73 0.00 40.43 3.67
4582 4743 2.413453 GTCTTGCGCTAAGAGACTTTGG 59.587 50.000 18.44 0.00 45.71 3.28
4583 4744 2.413453 GGTCTTGCGCTAAGAGACTTTG 59.587 50.000 22.91 0.00 45.71 2.77
4584 4745 2.300437 AGGTCTTGCGCTAAGAGACTTT 59.700 45.455 22.91 14.31 45.71 2.66
4585 4746 1.896465 AGGTCTTGCGCTAAGAGACTT 59.104 47.619 22.91 17.23 45.71 3.01
4586 4747 1.551452 AGGTCTTGCGCTAAGAGACT 58.449 50.000 22.91 18.83 45.71 3.24
4587 4748 2.371910 AAGGTCTTGCGCTAAGAGAC 57.628 50.000 18.44 18.59 45.71 3.36
4588 4749 3.067106 CAAAAGGTCTTGCGCTAAGAGA 58.933 45.455 18.44 9.99 45.71 3.10
4589 4750 2.808543 ACAAAAGGTCTTGCGCTAAGAG 59.191 45.455 18.44 10.73 45.71 2.85
4590 4751 2.846193 ACAAAAGGTCTTGCGCTAAGA 58.154 42.857 9.73 13.31 43.01 2.10
4591 4752 4.742438 TTACAAAAGGTCTTGCGCTAAG 57.258 40.909 9.73 11.02 37.76 2.18
4592 4753 4.553156 CGTTTACAAAAGGTCTTGCGCTAA 60.553 41.667 9.73 0.00 0.00 3.09
4593 4754 3.059461 CGTTTACAAAAGGTCTTGCGCTA 60.059 43.478 9.73 0.00 0.00 4.26
4594 4755 2.286772 CGTTTACAAAAGGTCTTGCGCT 60.287 45.455 9.73 0.00 0.00 5.92
4595 4756 2.041244 CGTTTACAAAAGGTCTTGCGC 58.959 47.619 0.00 0.00 0.00 6.09
4596 4757 2.041244 GCGTTTACAAAAGGTCTTGCG 58.959 47.619 0.00 0.00 0.00 4.85
4597 4758 3.349488 AGCGTTTACAAAAGGTCTTGC 57.651 42.857 0.00 0.00 0.00 4.01
4598 4759 6.248631 GCTATAGCGTTTACAAAAGGTCTTG 58.751 40.000 9.40 0.00 31.10 3.02
4599 4760 6.418585 GCTATAGCGTTTACAAAAGGTCTT 57.581 37.500 9.40 0.00 31.10 3.01
4617 4778 1.400846 GCTCCGCTATAGCACGCTATA 59.599 52.381 23.99 15.99 42.21 1.31
4618 4779 0.171455 GCTCCGCTATAGCACGCTAT 59.829 55.000 23.99 15.45 42.21 2.97
4619 4780 0.889638 AGCTCCGCTATAGCACGCTA 60.890 55.000 23.99 0.39 42.62 4.26
4620 4781 0.889638 TAGCTCCGCTATAGCACGCT 60.890 55.000 25.78 25.78 42.62 5.07
4621 4782 1.579932 TAGCTCCGCTATAGCACGC 59.420 57.895 23.99 20.26 42.62 5.34
4629 4790 2.341101 GCCCGCTATAGCTCCGCTA 61.341 63.158 21.98 0.00 45.55 4.26
4630 4791 2.766306 TAGCCCGCTATAGCTCCGCT 62.766 60.000 24.41 24.41 43.41 5.52
4631 4792 1.668101 ATAGCCCGCTATAGCTCCGC 61.668 60.000 21.98 18.46 40.56 5.54
4632 4793 0.818296 AATAGCCCGCTATAGCTCCG 59.182 55.000 21.98 10.15 40.56 4.63
4633 4794 4.467198 TTAAATAGCCCGCTATAGCTCC 57.533 45.455 21.98 10.06 40.56 4.70
4634 4795 5.699458 TGTTTTAAATAGCCCGCTATAGCTC 59.301 40.000 21.98 11.04 40.56 4.09
4635 4796 5.617252 TGTTTTAAATAGCCCGCTATAGCT 58.383 37.500 21.98 6.31 43.20 3.32
4636 4797 5.469084 ACTGTTTTAAATAGCCCGCTATAGC 59.531 40.000 15.09 15.09 38.20 2.97
4637 4798 6.704493 TCACTGTTTTAAATAGCCCGCTATAG 59.296 38.462 9.56 4.62 38.20 1.31
4638 4799 6.584488 TCACTGTTTTAAATAGCCCGCTATA 58.416 36.000 9.56 0.00 38.20 1.31
4639 4800 5.433526 TCACTGTTTTAAATAGCCCGCTAT 58.566 37.500 3.31 3.31 40.63 2.97
4640 4801 4.834534 TCACTGTTTTAAATAGCCCGCTA 58.165 39.130 0.00 0.00 0.00 4.26
4641 4802 3.681593 TCACTGTTTTAAATAGCCCGCT 58.318 40.909 1.36 0.00 0.00 5.52
4642 4803 3.439129 ACTCACTGTTTTAAATAGCCCGC 59.561 43.478 1.36 0.00 0.00 6.13
4643 4804 6.730960 TTACTCACTGTTTTAAATAGCCCG 57.269 37.500 1.36 0.00 0.00 6.13
4644 4805 9.353999 CATTTTACTCACTGTTTTAAATAGCCC 57.646 33.333 1.36 0.00 0.00 5.19
4653 4814 9.125026 AGATTCACTCATTTTACTCACTGTTTT 57.875 29.630 0.00 0.00 0.00 2.43
4654 4815 8.682936 AGATTCACTCATTTTACTCACTGTTT 57.317 30.769 0.00 0.00 0.00 2.83
4655 4816 9.209175 GTAGATTCACTCATTTTACTCACTGTT 57.791 33.333 0.00 0.00 0.00 3.16
4656 4817 8.367911 TGTAGATTCACTCATTTTACTCACTGT 58.632 33.333 0.00 0.00 0.00 3.55
4657 4818 8.763049 TGTAGATTCACTCATTTTACTCACTG 57.237 34.615 0.00 0.00 0.00 3.66
4658 4819 9.950496 AATGTAGATTCACTCATTTTACTCACT 57.050 29.630 0.00 0.00 0.00 3.41
4688 4849 8.375506 AACATACGGATGTATCCAGACATATTT 58.624 33.333 15.10 0.00 45.93 1.40
4689 4850 7.819415 CAACATACGGATGTATCCAGACATATT 59.181 37.037 15.10 0.00 45.93 1.28
4690 4851 7.039011 ACAACATACGGATGTATCCAGACATAT 60.039 37.037 15.10 0.00 45.93 1.78
4691 4852 6.266786 ACAACATACGGATGTATCCAGACATA 59.733 38.462 15.10 0.00 45.93 2.29
4692 4853 5.070446 ACAACATACGGATGTATCCAGACAT 59.930 40.000 15.10 0.00 45.93 3.06
4693 4854 4.404394 ACAACATACGGATGTATCCAGACA 59.596 41.667 15.10 0.00 45.93 3.41
4694 4855 4.945246 ACAACATACGGATGTATCCAGAC 58.055 43.478 15.10 0.00 45.93 3.51
4695 4856 5.831525 ACTACAACATACGGATGTATCCAGA 59.168 40.000 15.10 0.00 45.93 3.86
4696 4857 6.085555 ACTACAACATACGGATGTATCCAG 57.914 41.667 15.10 11.29 45.93 3.86
4697 4858 5.010314 GGACTACAACATACGGATGTATCCA 59.990 44.000 15.10 0.00 45.93 3.41
4698 4859 5.010314 TGGACTACAACATACGGATGTATCC 59.990 44.000 15.10 15.54 45.93 2.59
4699 4860 6.080648 TGGACTACAACATACGGATGTATC 57.919 41.667 15.10 6.98 45.93 2.24
4700 4861 6.665992 ATGGACTACAACATACGGATGTAT 57.334 37.500 15.10 8.21 45.93 2.29
4701 4862 7.449086 TCATATGGACTACAACATACGGATGTA 59.551 37.037 15.10 0.00 45.93 2.29
4703 4864 6.687604 TCATATGGACTACAACATACGGATG 58.312 40.000 5.94 5.94 39.16 3.51
4704 4865 6.911250 TCATATGGACTACAACATACGGAT 57.089 37.500 2.13 0.00 32.87 4.18
4705 4866 6.718522 TTCATATGGACTACAACATACGGA 57.281 37.500 2.13 0.00 32.87 4.69
4706 4867 6.929049 ACATTCATATGGACTACAACATACGG 59.071 38.462 2.13 0.00 36.01 4.02
4707 4868 7.867909 AGACATTCATATGGACTACAACATACG 59.132 37.037 2.13 0.00 36.01 3.06
4710 4871 9.147732 TCTAGACATTCATATGGACTACAACAT 57.852 33.333 2.13 0.00 36.01 2.71
4711 4872 8.533569 TCTAGACATTCATATGGACTACAACA 57.466 34.615 2.13 0.00 36.01 3.33
4712 4873 9.817809 TTTCTAGACATTCATATGGACTACAAC 57.182 33.333 2.13 0.00 36.01 3.32
4714 4875 9.421399 TCTTTCTAGACATTCATATGGACTACA 57.579 33.333 2.13 0.00 36.01 2.74
4734 4895 9.780186 CCTCCGTTCCTAAATATTTATCTTTCT 57.220 33.333 8.34 0.00 0.00 2.52
4735 4896 9.000486 CCCTCCGTTCCTAAATATTTATCTTTC 58.000 37.037 8.34 0.00 0.00 2.62
4736 4897 8.720537 TCCCTCCGTTCCTAAATATTTATCTTT 58.279 33.333 8.34 0.00 0.00 2.52
4737 4898 8.271398 TCCCTCCGTTCCTAAATATTTATCTT 57.729 34.615 8.34 0.00 0.00 2.40
4738 4899 7.513091 ACTCCCTCCGTTCCTAAATATTTATCT 59.487 37.037 8.34 0.00 0.00 1.98
4739 4900 7.677892 ACTCCCTCCGTTCCTAAATATTTATC 58.322 38.462 8.34 0.61 0.00 1.75
4740 4901 7.628501 ACTCCCTCCGTTCCTAAATATTTAT 57.371 36.000 8.34 0.00 0.00 1.40
4741 4902 7.564660 TGTACTCCCTCCGTTCCTAAATATTTA 59.435 37.037 7.66 7.66 0.00 1.40
4742 4903 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
4743 4904 5.901276 TGTACTCCCTCCGTTCCTAAATATT 59.099 40.000 0.00 0.00 0.00 1.28
4744 4905 5.303845 GTGTACTCCCTCCGTTCCTAAATAT 59.696 44.000 0.00 0.00 0.00 1.28
4745 4906 4.646492 GTGTACTCCCTCCGTTCCTAAATA 59.354 45.833 0.00 0.00 0.00 1.40
4746 4907 3.450096 GTGTACTCCCTCCGTTCCTAAAT 59.550 47.826 0.00 0.00 0.00 1.40
4747 4908 2.827921 GTGTACTCCCTCCGTTCCTAAA 59.172 50.000 0.00 0.00 0.00 1.85
4748 4909 2.225091 TGTGTACTCCCTCCGTTCCTAA 60.225 50.000 0.00 0.00 0.00 2.69
4749 4910 1.355381 TGTGTACTCCCTCCGTTCCTA 59.645 52.381 0.00 0.00 0.00 2.94
4750 4911 0.113776 TGTGTACTCCCTCCGTTCCT 59.886 55.000 0.00 0.00 0.00 3.36
4751 4912 0.971386 TTGTGTACTCCCTCCGTTCC 59.029 55.000 0.00 0.00 0.00 3.62
4752 4913 4.667519 ATATTGTGTACTCCCTCCGTTC 57.332 45.455 0.00 0.00 0.00 3.95
4753 4914 5.011738 CCATATATTGTGTACTCCCTCCGTT 59.988 44.000 0.00 0.00 0.00 4.44
4754 4915 4.527038 CCATATATTGTGTACTCCCTCCGT 59.473 45.833 0.00 0.00 0.00 4.69
4755 4916 4.081642 CCCATATATTGTGTACTCCCTCCG 60.082 50.000 0.00 0.00 0.00 4.63
4756 4917 5.091552 TCCCATATATTGTGTACTCCCTCC 58.908 45.833 0.00 0.00 0.00 4.30
4757 4918 6.644347 CATCCCATATATTGTGTACTCCCTC 58.356 44.000 0.00 0.00 0.00 4.30
4758 4919 5.045578 GCATCCCATATATTGTGTACTCCCT 60.046 44.000 0.00 0.00 0.00 4.20
4759 4920 5.186198 GCATCCCATATATTGTGTACTCCC 58.814 45.833 0.00 0.00 0.00 4.30
4760 4921 5.804639 TGCATCCCATATATTGTGTACTCC 58.195 41.667 0.00 0.00 0.00 3.85
4761 4922 7.105588 TCATGCATCCCATATATTGTGTACTC 58.894 38.462 0.00 0.00 31.47 2.59
4762 4923 7.019656 TCATGCATCCCATATATTGTGTACT 57.980 36.000 0.00 0.00 31.47 2.73
4763 4924 7.686438 TTCATGCATCCCATATATTGTGTAC 57.314 36.000 0.00 0.00 31.47 2.90
4909 5070 9.477484 ACGTTTGTGGCAAAACATATAATTTTA 57.523 25.926 18.50 0.00 39.53 1.52
4934 5096 7.683437 ATTTTGTGAAGCTTAGGTAGGTTAC 57.317 36.000 0.00 0.00 44.30 2.50
4977 5139 3.893326 ATGAAAGGGCCAAATACAAGC 57.107 42.857 6.18 0.00 0.00 4.01
5046 5208 8.408601 AGCCAAGTTCATGTAAATTCATATGAC 58.591 33.333 4.48 0.00 29.96 3.06
5081 5244 5.611374 GCCATCTGCTACTTCAATAACCTA 58.389 41.667 0.00 0.00 36.87 3.08
5213 5376 9.155053 GAACGATGGTCGATATTTTCATTTTAC 57.845 33.333 6.34 0.00 43.74 2.01
5278 5441 4.743057 AAGCAAAATAATCCTGCCCTTC 57.257 40.909 0.00 0.00 36.73 3.46
5851 6128 6.602410 TCAGCCAAATTCATAACCATCAAA 57.398 33.333 0.00 0.00 0.00 2.69
5905 6182 9.638239 TTGACTTTGAACTTTTTATATCATGGC 57.362 29.630 0.00 0.00 0.00 4.40
6101 6378 4.789012 ATGTTTAGGTTCAATGTGCAGG 57.211 40.909 0.00 0.00 0.00 4.85
6294 6572 3.883830 AGAACAGCAGACATGTAGGAG 57.116 47.619 0.00 0.00 0.00 3.69
6328 6606 4.586001 AGGTCACTTCTTGCATTTTGTCAT 59.414 37.500 0.00 0.00 0.00 3.06
6350 6628 4.501559 CACTCACACTTGCATTTTTGTCAG 59.498 41.667 0.00 0.00 0.00 3.51
6413 6691 3.773119 TGGAAGGAGGAGCTACGTAAATT 59.227 43.478 0.00 0.00 0.00 1.82
6459 6737 5.651139 AGTTGATGGTCAATGGAAATCTCAG 59.349 40.000 0.00 0.00 38.79 3.35
6599 6877 9.841295 GAGTATATGGTAAGGTAATGTGGAAAA 57.159 33.333 0.00 0.00 0.00 2.29
6603 6881 7.732025 TGTGAGTATATGGTAAGGTAATGTGG 58.268 38.462 0.00 0.00 0.00 4.17
6694 6972 4.024387 GGCAAGTACAAGAATGAACGTTCA 60.024 41.667 31.41 31.41 42.14 3.18
6864 7142 5.345202 GCTCATGCTGCAAAATTATATGCTC 59.655 40.000 6.36 5.18 42.97 4.26
6928 7208 2.036098 CCCATGAGGTGCCTGCAA 59.964 61.111 0.00 0.00 0.00 4.08
7214 7518 1.674962 GCTCTGCAAATAGAGGCAAGG 59.325 52.381 5.09 0.00 43.49 3.61
7408 7712 5.937975 ATTATAGGTGCTTTGTTTGGCAT 57.062 34.783 0.00 0.00 40.66 4.40
7522 7826 1.664659 TGCATTTGTTGTTGTTGCTGC 59.335 42.857 0.00 0.00 34.47 5.25
7523 7827 2.931325 ACTGCATTTGTTGTTGTTGCTG 59.069 40.909 0.00 0.00 37.98 4.41
7524 7828 2.931325 CACTGCATTTGTTGTTGTTGCT 59.069 40.909 0.00 0.00 34.47 3.91
7571 7881 1.483496 GGGTTGGTTTTGGGTATGGGT 60.483 52.381 0.00 0.00 0.00 4.51
7687 7997 6.200100 ACGCATAGTATCTTAAGTGACTTCG 58.800 40.000 0.00 15.72 0.00 3.79
7691 8003 7.861372 ACATGTACGCATAGTATCTTAAGTGAC 59.139 37.037 0.00 2.12 37.69 3.67
7737 8049 5.175859 GGTAGCTACTGCATACACAAGAAA 58.824 41.667 22.74 0.00 42.74 2.52
7810 8125 2.047465 CGAAGCTGAGCCTGCTGT 60.047 61.111 0.00 0.21 38.59 4.40
7998 8313 4.020928 CAGCATTCCTGATATCTCTGCTCT 60.021 45.833 3.98 0.00 44.64 4.09
8008 8323 3.264193 ACAGTGAACCAGCATTCCTGATA 59.736 43.478 0.00 0.00 44.64 2.15
8089 8404 4.097892 CCATGCTAAGGTAATTGGTTGGTC 59.902 45.833 0.00 0.00 0.00 4.02
8298 8613 3.329386 TCTTCACGAAGAGATGGCTTTG 58.671 45.455 5.38 0.00 42.06 2.77
8322 8637 9.896645 AGCCAATTCTAGAACCATATGTATATG 57.103 33.333 7.48 5.14 39.80 1.78
8720 9092 4.436998 GAGGTGCCACCGACGAGG 62.437 72.222 8.52 0.00 44.90 4.63
8729 9101 0.911769 AGATTTGATCGGAGGTGCCA 59.088 50.000 0.00 0.00 35.94 4.92
8744 9116 4.387598 GGCTGCATCAGTCAGAATAGATT 58.612 43.478 0.50 0.00 35.96 2.40
8749 9121 0.463295 CCGGCTGCATCAGTCAGAAT 60.463 55.000 0.50 0.00 35.60 2.40
8838 9210 1.153745 CTCGTAGCTGGTGCCAGAC 60.154 63.158 21.34 12.34 46.30 3.51
8852 9224 1.449246 CTACGTCTCCCCGACTCGT 60.449 63.158 0.00 0.00 40.59 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.