Multiple sequence alignment - TraesCS2B01G280800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G280800 chr2B 100.000 2620 0 0 1 2620 387154148 387151529 0 4839
1 TraesCS2B01G280800 chr2D 91.675 2006 144 8 1 2004 318716626 318714642 0 2758
2 TraesCS2B01G280800 chr2A 92.645 1210 66 7 686 1893 412370770 412371958 0 1720
3 TraesCS2B01G280800 chr2A 98.384 495 8 0 2126 2620 542560249 542559755 0 870
4 TraesCS2B01G280800 chr2A 88.141 683 78 3 1 682 412368390 412369070 0 809
5 TraesCS2B01G280800 chr1A 98.990 495 5 0 2126 2620 441796474 441795980 0 887
6 TraesCS2B01G280800 chr1A 97.813 503 8 2 2118 2620 182073744 182074243 0 865
7 TraesCS2B01G280800 chr4B 98.214 504 7 2 2119 2620 519386260 519386763 0 880
8 TraesCS2B01G280800 chr7B 97.830 507 9 1 2116 2620 477781349 477781855 0 874
9 TraesCS2B01G280800 chr7B 97.595 499 12 0 2122 2620 18101158 18101656 0 856
10 TraesCS2B01G280800 chr4A 98.016 504 8 2 2119 2620 657989112 657989615 0 874
11 TraesCS2B01G280800 chr3A 98.182 495 9 0 2126 2620 499682404 499681910 0 865
12 TraesCS2B01G280800 chr1B 97.206 501 13 1 2120 2620 579936791 579936292 0 846


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G280800 chr2B 387151529 387154148 2619 True 4839.0 4839 100.000 1 2620 1 chr2B.!!$R1 2619
1 TraesCS2B01G280800 chr2D 318714642 318716626 1984 True 2758.0 2758 91.675 1 2004 1 chr2D.!!$R1 2003
2 TraesCS2B01G280800 chr2A 412368390 412371958 3568 False 1264.5 1720 90.393 1 1893 2 chr2A.!!$F1 1892
3 TraesCS2B01G280800 chr4B 519386260 519386763 503 False 880.0 880 98.214 2119 2620 1 chr4B.!!$F1 501
4 TraesCS2B01G280800 chr7B 477781349 477781855 506 False 874.0 874 97.830 2116 2620 1 chr7B.!!$F2 504
5 TraesCS2B01G280800 chr4A 657989112 657989615 503 False 874.0 874 98.016 2119 2620 1 chr4A.!!$F1 501

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
434 436 0.249447 CGAGCGCATTCTATCCACCA 60.249 55.0 11.47 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2083 3783 0.030235 GCACGGAACACAAAAGGACC 59.97 55.0 0.0 0.0 0.0 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.691342 CTCCCAGGAACACGGCGA 61.691 66.667 16.62 0.00 0.00 5.54
126 127 2.740714 GACGGTTGCGTGCTGATCC 61.741 63.158 0.00 0.00 0.00 3.36
132 133 2.279517 GCGTGCTGATCCGGGTAG 60.280 66.667 0.00 0.00 0.00 3.18
156 157 1.544724 GCCCTTGTACATTCCAGCAA 58.455 50.000 0.00 0.00 0.00 3.91
167 168 7.669427 TGTACATTCCAGCAAAGAAAATTGAT 58.331 30.769 0.00 0.00 31.84 2.57
213 214 2.109181 GATCCCTAGCACACGGCC 59.891 66.667 0.00 0.00 46.50 6.13
235 236 1.205064 CAGCCAGAGTTGAAACGCG 59.795 57.895 3.53 3.53 33.71 6.01
242 243 0.517316 GAGTTGAAACGCGGCAAGAT 59.483 50.000 12.47 3.67 0.00 2.40
247 248 1.463056 TGAAACGCGGCAAGATTACAG 59.537 47.619 12.47 0.00 0.00 2.74
261 262 7.369803 CAAGATTACAGACTTGCACTAACAT 57.630 36.000 0.00 0.00 37.32 2.71
263 264 8.935844 CAAGATTACAGACTTGCACTAACATAA 58.064 33.333 0.00 0.00 37.32 1.90
332 333 2.760385 GCACGGGGACTAGCTCCT 60.760 66.667 0.00 0.00 39.39 3.69
367 368 5.122554 TCGGTGAACGCATTAACATAACAAT 59.877 36.000 0.00 0.00 43.86 2.71
369 370 6.627276 CGGTGAACGCATTAACATAACAATAG 59.373 38.462 0.00 0.00 34.82 1.73
379 380 9.897744 CATTAACATAACAATAGCATAACCCTG 57.102 33.333 0.00 0.00 0.00 4.45
387 388 6.186957 ACAATAGCATAACCCTGATCAACAA 58.813 36.000 0.00 0.00 0.00 2.83
393 394 5.105797 GCATAACCCTGATCAACAACATCAA 60.106 40.000 0.00 0.00 29.74 2.57
397 398 3.256383 CCCTGATCAACAACATCAAGCAA 59.744 43.478 0.00 0.00 29.74 3.91
428 430 0.595053 CGTGGTCGAGCGCATTCTAT 60.595 55.000 25.91 0.00 39.71 1.98
434 436 0.249447 CGAGCGCATTCTATCCACCA 60.249 55.000 11.47 0.00 0.00 4.17
436 438 2.498167 GAGCGCATTCTATCCACCATT 58.502 47.619 11.47 0.00 0.00 3.16
440 442 3.470709 CGCATTCTATCCACCATTGAGT 58.529 45.455 0.00 0.00 0.00 3.41
504 506 4.072913 CGATCACGTCGTCAAGGG 57.927 61.111 0.00 0.00 45.19 3.95
532 534 7.007815 GCGATTCTTGAATTTCTTGCTAAGTTC 59.992 37.037 0.00 0.00 0.00 3.01
537 539 7.667219 TCTTGAATTTCTTGCTAAGTTCTCCAT 59.333 33.333 0.00 0.00 0.00 3.41
540 542 8.321353 TGAATTTCTTGCTAAGTTCTCCATAGA 58.679 33.333 0.00 0.00 0.00 1.98
556 558 2.420058 TAGAGAGCTCGGTGATGTCA 57.580 50.000 8.37 0.00 34.09 3.58
581 583 2.078392 CATTTTGAACAATGCCCAGGC 58.922 47.619 0.38 0.38 42.35 4.85
602 604 4.329545 GGCACACGAGGGCCTCAA 62.330 66.667 31.69 0.00 46.74 3.02
626 628 0.609957 CTTGGCCACAGGAGCATGAA 60.610 55.000 3.88 0.00 0.00 2.57
629 631 0.682209 GGCCACAGGAGCATGAACAT 60.682 55.000 0.00 0.00 0.00 2.71
632 634 2.439409 CCACAGGAGCATGAACATCAA 58.561 47.619 0.00 0.00 0.00 2.57
633 635 2.163010 CCACAGGAGCATGAACATCAAC 59.837 50.000 0.00 0.00 0.00 3.18
669 671 7.037586 TGTTGGTAGAAGGGTTCTTGAATAGAT 60.038 37.037 0.00 0.00 41.14 1.98
670 672 7.125792 TGGTAGAAGGGTTCTTGAATAGATC 57.874 40.000 0.00 0.00 41.14 2.75
684 2382 4.411869 TGAATAGATCCAATGTAGCACCCA 59.588 41.667 0.00 0.00 0.00 4.51
687 2385 2.846206 AGATCCAATGTAGCACCCAAGA 59.154 45.455 0.00 0.00 0.00 3.02
734 2432 3.056678 AGAATGTTGATGCGGCATTTTCA 60.057 39.130 17.78 15.34 33.56 2.69
736 2434 1.612950 TGTTGATGCGGCATTTTCAGT 59.387 42.857 17.78 0.00 0.00 3.41
779 2477 2.747446 TCGGAAGTGCTAGATTTTTGCC 59.253 45.455 0.00 0.00 0.00 4.52
783 2481 4.574828 GGAAGTGCTAGATTTTTGCCGATA 59.425 41.667 0.00 0.00 0.00 2.92
843 2542 2.112297 TTCCACAAGACACGGCCC 59.888 61.111 0.00 0.00 0.00 5.80
866 2565 2.868583 CGAATCATTACACCAGAGGCTG 59.131 50.000 0.00 0.00 0.00 4.85
914 2613 6.062749 CCTCATCATTCTGGTGATCATTTCT 58.937 40.000 0.00 0.00 36.82 2.52
915 2614 7.222161 CCTCATCATTCTGGTGATCATTTCTA 58.778 38.462 0.00 0.00 36.82 2.10
934 2633 4.985538 TCTAGCCTCCAACAAGAACAAAT 58.014 39.130 0.00 0.00 0.00 2.32
944 2643 6.098124 TCCAACAAGAACAAATGAGAATTGGT 59.902 34.615 0.00 0.00 35.46 3.67
948 2647 6.127366 ACAAGAACAAATGAGAATTGGTGTGT 60.127 34.615 0.00 0.00 32.02 3.72
950 2649 7.581213 AGAACAAATGAGAATTGGTGTGTAA 57.419 32.000 0.00 0.00 32.02 2.41
957 2656 5.996219 TGAGAATTGGTGTGTAAACATTCG 58.004 37.500 0.00 0.00 0.00 3.34
987 2686 6.917477 TCAGATCAACAACAACAATTAGCAAC 59.083 34.615 0.00 0.00 0.00 4.17
1014 2713 2.761195 CGAGATGACGTCGGAGCCA 61.761 63.158 11.62 0.00 33.66 4.75
1030 2729 2.304056 CCAGTGCCTCCAGGGATGT 61.304 63.158 0.00 0.00 38.01 3.06
1041 2740 4.166011 GGGATGTTGAGCGTGCGC 62.166 66.667 8.67 8.67 42.33 6.09
1069 2768 0.392595 GGGGATCAACCTCGTGAACC 60.393 60.000 0.00 0.00 39.21 3.62
1074 2773 0.249155 TCAACCTCGTGAACCGTGAC 60.249 55.000 0.00 0.00 37.94 3.67
1076 2775 2.008268 AACCTCGTGAACCGTGACGT 62.008 55.000 3.64 0.00 36.91 4.34
1078 2777 2.051971 TCGTGAACCGTGACGTCG 60.052 61.111 11.62 0.00 36.91 5.12
1099 2798 2.280552 GGCAGTGACCCCTACGTCA 61.281 63.158 0.00 0.00 40.44 4.35
1227 2926 6.477033 CACCGATCAAGATAGTAAGTTGAAGG 59.523 42.308 14.54 14.54 37.73 3.46
1261 2960 6.072728 GGTCATATAGATGTTTTTGCCGCATA 60.073 38.462 0.00 0.00 34.41 3.14
1282 2981 4.952262 ACTGCATGCATACAACTTAGTG 57.048 40.909 22.97 7.24 0.00 2.74
1305 3004 4.827692 ACATGAATCCTAACGTACTTGCA 58.172 39.130 0.00 0.00 0.00 4.08
1361 3060 2.549754 CAAGTTCAGCAAGGACGACAAT 59.450 45.455 0.00 0.00 0.00 2.71
1392 3091 4.640690 AGGTGGACCTGGAGCCGT 62.641 66.667 0.00 0.00 46.55 5.68
1395 3094 2.847234 TGGACCTGGAGCCGTTGT 60.847 61.111 0.00 0.00 0.00 3.32
1406 3105 2.629656 GCCGTTGTTGCAGATGGCT 61.630 57.895 17.79 0.00 45.15 4.75
1416 3115 2.037620 GCAGATGGCTCGGATGGACT 62.038 60.000 0.00 0.00 40.25 3.85
1622 3321 7.451255 TGGGTCAAAATACCATCATTATGATCC 59.549 37.037 4.51 0.00 41.67 3.36
1624 3323 9.028284 GGTCAAAATACCATCATTATGATCCAT 57.972 33.333 4.51 0.00 39.50 3.41
1690 3390 8.883954 TTTGTGTTGATTAATTTCTTCATGCA 57.116 26.923 0.00 0.00 0.00 3.96
1691 3391 9.491675 TTTGTGTTGATTAATTTCTTCATGCAT 57.508 25.926 0.00 0.00 0.00 3.96
1692 3392 9.491675 TTGTGTTGATTAATTTCTTCATGCATT 57.508 25.926 0.00 0.00 0.00 3.56
1693 3393 9.142515 TGTGTTGATTAATTTCTTCATGCATTC 57.857 29.630 0.00 0.00 0.00 2.67
1694 3394 8.598075 GTGTTGATTAATTTCTTCATGCATTCC 58.402 33.333 0.00 0.00 0.00 3.01
1695 3395 7.488792 TGTTGATTAATTTCTTCATGCATTCCG 59.511 33.333 0.00 0.00 0.00 4.30
1696 3396 7.099266 TGATTAATTTCTTCATGCATTCCGT 57.901 32.000 0.00 0.00 0.00 4.69
1697 3397 7.195646 TGATTAATTTCTTCATGCATTCCGTC 58.804 34.615 0.00 0.00 0.00 4.79
1698 3398 3.680642 ATTTCTTCATGCATTCCGTCG 57.319 42.857 0.00 0.00 0.00 5.12
1699 3399 2.093306 TTCTTCATGCATTCCGTCGT 57.907 45.000 0.00 0.00 0.00 4.34
1745 3445 4.387559 TCGATCCATGTTAAGTTTGTGTCG 59.612 41.667 0.00 0.00 0.00 4.35
1807 3507 5.681105 CGACGTCAATTTTCATGTGTTCTTT 59.319 36.000 17.16 0.00 0.00 2.52
1875 3575 7.038231 ACCTATCATGTTAATACTAAGGCCTCC 60.038 40.741 5.23 0.00 0.00 4.30
1904 3604 8.384607 ACTCAAAGAAAGAAATACCAAGTCTC 57.615 34.615 0.00 0.00 0.00 3.36
1910 3610 8.768501 AGAAAGAAATACCAAGTCTCCTTTTT 57.231 30.769 0.00 0.00 0.00 1.94
1916 3616 7.669089 AATACCAAGTCTCCTTTTTCCAAAA 57.331 32.000 0.00 0.00 0.00 2.44
1946 3646 1.043816 ATACTAGCATGCAGAGGCGT 58.956 50.000 21.98 9.30 45.35 5.68
1947 3647 0.385751 TACTAGCATGCAGAGGCGTC 59.614 55.000 21.98 0.00 45.35 5.19
1949 3649 0.249784 CTAGCATGCAGAGGCGTCAT 60.250 55.000 21.98 0.00 45.35 3.06
1954 3654 2.743538 GCAGAGGCGTCATGTGCA 60.744 61.111 9.41 0.00 34.18 4.57
1955 3655 2.747822 GCAGAGGCGTCATGTGCAG 61.748 63.158 9.41 3.36 34.18 4.41
1976 3676 2.690778 GCGCCCGTCAAAGAGCATT 61.691 57.895 0.00 0.00 0.00 3.56
1979 3679 0.733909 GCCCGTCAAAGAGCATTTGC 60.734 55.000 9.00 0.00 42.49 3.68
1999 3699 4.382291 TGCGTGTATGTAGGTTGTCTTTT 58.618 39.130 0.00 0.00 0.00 2.27
2004 3704 7.190871 CGTGTATGTAGGTTGTCTTTTGTTTT 58.809 34.615 0.00 0.00 0.00 2.43
2005 3705 8.336806 CGTGTATGTAGGTTGTCTTTTGTTTTA 58.663 33.333 0.00 0.00 0.00 1.52
2009 3709 7.995463 TGTAGGTTGTCTTTTGTTTTAATGC 57.005 32.000 0.00 0.00 0.00 3.56
2010 3710 6.693545 TGTAGGTTGTCTTTTGTTTTAATGCG 59.306 34.615 0.00 0.00 0.00 4.73
2011 3711 5.897050 AGGTTGTCTTTTGTTTTAATGCGA 58.103 33.333 0.00 0.00 0.00 5.10
2012 3712 6.334202 AGGTTGTCTTTTGTTTTAATGCGAA 58.666 32.000 0.00 0.00 0.00 4.70
2013 3713 6.475402 AGGTTGTCTTTTGTTTTAATGCGAAG 59.525 34.615 0.00 0.00 0.00 3.79
2014 3714 6.474102 GGTTGTCTTTTGTTTTAATGCGAAGA 59.526 34.615 0.00 0.00 0.00 2.87
2015 3715 7.305993 GGTTGTCTTTTGTTTTAATGCGAAGAG 60.306 37.037 0.00 0.00 0.00 2.85
2016 3716 7.022055 TGTCTTTTGTTTTAATGCGAAGAGA 57.978 32.000 0.00 0.00 0.00 3.10
2017 3717 7.648142 TGTCTTTTGTTTTAATGCGAAGAGAT 58.352 30.769 0.00 0.00 0.00 2.75
2018 3718 7.591057 TGTCTTTTGTTTTAATGCGAAGAGATG 59.409 33.333 0.00 0.00 0.00 2.90
2019 3719 6.582295 TCTTTTGTTTTAATGCGAAGAGATGC 59.418 34.615 0.00 0.00 0.00 3.91
2020 3720 4.002267 TGTTTTAATGCGAAGAGATGCG 57.998 40.909 0.00 0.00 0.00 4.73
2021 3721 3.181511 TGTTTTAATGCGAAGAGATGCGG 60.182 43.478 0.00 0.00 0.00 5.69
2022 3722 0.937304 TTAATGCGAAGAGATGCGGC 59.063 50.000 0.00 0.00 0.00 6.53
2023 3723 0.179086 TAATGCGAAGAGATGCGGCA 60.179 50.000 4.58 4.58 38.09 5.69
2024 3724 1.434622 AATGCGAAGAGATGCGGCAG 61.435 55.000 9.25 0.00 37.01 4.85
2025 3725 2.510238 GCGAAGAGATGCGGCAGT 60.510 61.111 9.25 0.00 0.00 4.40
2026 3726 2.806856 GCGAAGAGATGCGGCAGTG 61.807 63.158 9.25 0.00 0.00 3.66
2027 3727 2.169789 CGAAGAGATGCGGCAGTGG 61.170 63.158 9.25 0.00 0.00 4.00
2028 3728 1.219124 GAAGAGATGCGGCAGTGGA 59.781 57.895 9.25 0.00 0.00 4.02
2029 3729 0.179062 GAAGAGATGCGGCAGTGGAT 60.179 55.000 9.25 0.00 0.00 3.41
2030 3730 0.254178 AAGAGATGCGGCAGTGGATT 59.746 50.000 9.25 0.00 0.00 3.01
2031 3731 0.254178 AGAGATGCGGCAGTGGATTT 59.746 50.000 9.25 0.00 0.00 2.17
2032 3732 0.379669 GAGATGCGGCAGTGGATTTG 59.620 55.000 9.25 0.00 0.00 2.32
2033 3733 0.035152 AGATGCGGCAGTGGATTTGA 60.035 50.000 9.25 0.00 0.00 2.69
2034 3734 0.379669 GATGCGGCAGTGGATTTGAG 59.620 55.000 9.25 0.00 0.00 3.02
2035 3735 1.033746 ATGCGGCAGTGGATTTGAGG 61.034 55.000 9.25 0.00 0.00 3.86
2036 3736 2.409870 GCGGCAGTGGATTTGAGGG 61.410 63.158 0.00 0.00 0.00 4.30
2037 3737 1.002134 CGGCAGTGGATTTGAGGGT 60.002 57.895 0.00 0.00 0.00 4.34
2038 3738 1.308069 CGGCAGTGGATTTGAGGGTG 61.308 60.000 0.00 0.00 0.00 4.61
2039 3739 0.038166 GGCAGTGGATTTGAGGGTGA 59.962 55.000 0.00 0.00 0.00 4.02
2040 3740 1.457346 GCAGTGGATTTGAGGGTGAG 58.543 55.000 0.00 0.00 0.00 3.51
2041 3741 1.457346 CAGTGGATTTGAGGGTGAGC 58.543 55.000 0.00 0.00 0.00 4.26
2042 3742 1.004044 CAGTGGATTTGAGGGTGAGCT 59.996 52.381 0.00 0.00 0.00 4.09
2043 3743 1.280421 AGTGGATTTGAGGGTGAGCTC 59.720 52.381 6.82 6.82 0.00 4.09
2044 3744 1.003580 GTGGATTTGAGGGTGAGCTCA 59.996 52.381 13.74 13.74 0.00 4.26
2045 3745 1.918262 TGGATTTGAGGGTGAGCTCAT 59.082 47.619 21.47 3.30 0.00 2.90
2046 3746 2.295885 GGATTTGAGGGTGAGCTCATG 58.704 52.381 21.47 0.00 0.00 3.07
2047 3747 2.092753 GGATTTGAGGGTGAGCTCATGA 60.093 50.000 21.47 0.00 0.00 3.07
2048 3748 2.479566 TTTGAGGGTGAGCTCATGAC 57.520 50.000 21.47 13.17 0.00 3.06
2049 3749 1.351076 TTGAGGGTGAGCTCATGACA 58.649 50.000 21.47 14.57 0.00 3.58
2050 3750 1.576577 TGAGGGTGAGCTCATGACAT 58.423 50.000 21.47 11.21 0.00 3.06
2051 3751 2.750814 TGAGGGTGAGCTCATGACATA 58.249 47.619 21.47 2.56 0.00 2.29
2052 3752 3.311990 TGAGGGTGAGCTCATGACATAT 58.688 45.455 21.47 1.95 0.00 1.78
2053 3753 4.482990 TGAGGGTGAGCTCATGACATATA 58.517 43.478 21.47 1.94 0.00 0.86
2054 3754 5.089434 TGAGGGTGAGCTCATGACATATAT 58.911 41.667 21.47 0.00 0.00 0.86
2055 3755 5.046807 TGAGGGTGAGCTCATGACATATATG 60.047 44.000 21.47 11.29 0.00 1.78
2056 3756 4.842948 AGGGTGAGCTCATGACATATATGT 59.157 41.667 21.47 18.31 45.16 2.29
2057 3757 5.309020 AGGGTGAGCTCATGACATATATGTT 59.691 40.000 21.47 1.98 41.95 2.71
2058 3758 5.641209 GGGTGAGCTCATGACATATATGTTC 59.359 44.000 21.47 11.29 41.95 3.18
2059 3759 6.462500 GGTGAGCTCATGACATATATGTTCT 58.538 40.000 21.47 7.45 41.95 3.01
2060 3760 6.933521 GGTGAGCTCATGACATATATGTTCTT 59.066 38.462 21.47 8.36 41.95 2.52
2061 3761 8.090831 GGTGAGCTCATGACATATATGTTCTTA 58.909 37.037 21.47 7.49 41.95 2.10
2062 3762 9.650539 GTGAGCTCATGACATATATGTTCTTAT 57.349 33.333 21.47 9.25 41.95 1.73
2088 3788 9.914834 TTTGTTAGTTATATTAATGCAGGTCCT 57.085 29.630 0.00 0.00 0.00 3.85
2089 3789 9.914834 TTGTTAGTTATATTAATGCAGGTCCTT 57.085 29.630 0.00 0.00 0.00 3.36
2090 3790 9.914834 TGTTAGTTATATTAATGCAGGTCCTTT 57.085 29.630 0.00 0.00 0.00 3.11
2093 3793 8.823220 AGTTATATTAATGCAGGTCCTTTTGT 57.177 30.769 0.00 0.00 0.00 2.83
2094 3794 8.686334 AGTTATATTAATGCAGGTCCTTTTGTG 58.314 33.333 0.00 0.00 0.00 3.33
2095 3795 8.466798 GTTATATTAATGCAGGTCCTTTTGTGT 58.533 33.333 0.00 0.00 0.00 3.72
2096 3796 5.806654 ATTAATGCAGGTCCTTTTGTGTT 57.193 34.783 0.00 0.00 0.00 3.32
2097 3797 3.733443 AATGCAGGTCCTTTTGTGTTC 57.267 42.857 0.00 0.00 0.00 3.18
2098 3798 1.398692 TGCAGGTCCTTTTGTGTTCC 58.601 50.000 0.00 0.00 0.00 3.62
2099 3799 0.310854 GCAGGTCCTTTTGTGTTCCG 59.689 55.000 0.00 0.00 0.00 4.30
2100 3800 1.675552 CAGGTCCTTTTGTGTTCCGT 58.324 50.000 0.00 0.00 0.00 4.69
2101 3801 1.333619 CAGGTCCTTTTGTGTTCCGTG 59.666 52.381 0.00 0.00 0.00 4.94
2102 3802 0.030235 GGTCCTTTTGTGTTCCGTGC 59.970 55.000 0.00 0.00 0.00 5.34
2103 3803 0.736053 GTCCTTTTGTGTTCCGTGCA 59.264 50.000 0.00 0.00 0.00 4.57
2104 3804 1.336755 GTCCTTTTGTGTTCCGTGCAT 59.663 47.619 0.00 0.00 0.00 3.96
2105 3805 1.606668 TCCTTTTGTGTTCCGTGCATC 59.393 47.619 0.00 0.00 0.00 3.91
2106 3806 1.336440 CCTTTTGTGTTCCGTGCATCA 59.664 47.619 0.00 0.00 0.00 3.07
2107 3807 2.030007 CCTTTTGTGTTCCGTGCATCAT 60.030 45.455 0.00 0.00 0.00 2.45
2108 3808 2.702898 TTTGTGTTCCGTGCATCATG 57.297 45.000 0.00 0.00 0.00 3.07
2109 3809 1.889545 TTGTGTTCCGTGCATCATGA 58.110 45.000 0.00 0.00 0.00 3.07
2110 3810 2.112380 TGTGTTCCGTGCATCATGAT 57.888 45.000 1.18 1.18 0.00 2.45
2111 3811 1.738908 TGTGTTCCGTGCATCATGATG 59.261 47.619 28.04 28.04 41.60 3.07
2384 4086 1.256812 GGCTAGTGTGTGGGCATTTT 58.743 50.000 0.00 0.00 31.56 1.82
2530 4234 2.294791 CCCGAGTTGCCATGTGTTTTTA 59.705 45.455 0.00 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 8.915057 AAATTAGATCAGATCGACCAATTCAT 57.085 30.769 4.67 0.00 0.00 2.57
74 75 7.172875 CCATCTCTACATCCTCATGTCAAATTC 59.827 40.741 0.00 0.00 42.66 2.17
82 83 4.987285 CGAAACCATCTCTACATCCTCATG 59.013 45.833 0.00 0.00 35.92 3.07
84 85 4.023980 ACGAAACCATCTCTACATCCTCA 58.976 43.478 0.00 0.00 0.00 3.86
132 133 1.092348 GGAATGTACAAGGGCCGAAC 58.908 55.000 0.00 0.00 0.00 3.95
156 157 8.934023 TGGTAGAACAACCTATCAATTTTCTT 57.066 30.769 0.00 0.00 40.44 2.52
167 168 5.163184 TGTGTCCAAATGGTAGAACAACCTA 60.163 40.000 0.00 0.00 40.44 3.08
213 214 1.466167 CGTTTCAACTCTGGCTGATGG 59.534 52.381 0.00 0.00 0.00 3.51
242 243 8.258007 AGCTATTATGTTAGTGCAAGTCTGTAA 58.742 33.333 0.00 0.00 0.00 2.41
247 248 8.552034 CCTTTAGCTATTATGTTAGTGCAAGTC 58.448 37.037 0.00 0.00 0.00 3.01
276 277 4.037565 GGCTGTTTGTAGGTTGTTTAAGCT 59.962 41.667 0.00 0.00 45.82 3.74
286 287 2.229792 CATGTGTGGCTGTTTGTAGGT 58.770 47.619 0.00 0.00 0.00 3.08
332 333 0.108520 GTTCACCGAGGGTTATGCGA 60.109 55.000 0.00 0.00 31.02 5.10
367 368 5.172687 TGTTGTTGATCAGGGTTATGCTA 57.827 39.130 0.00 0.00 0.00 3.49
369 370 4.398988 TGATGTTGTTGATCAGGGTTATGC 59.601 41.667 0.00 0.00 0.00 3.14
379 380 4.614284 CGAAGTTGCTTGATGTTGTTGATC 59.386 41.667 0.00 0.00 0.00 2.92
387 388 1.526887 CGACACGAAGTTGCTTGATGT 59.473 47.619 0.00 0.00 41.61 3.06
440 442 0.522626 CGATGCCAATGTCAGTGCAA 59.477 50.000 0.00 0.00 37.27 4.08
504 506 3.119352 AGCAAGAAATTCAAGAATCGCCC 60.119 43.478 0.00 0.00 0.00 6.13
532 534 1.974265 TCACCGAGCTCTCTATGGAG 58.026 55.000 12.85 0.00 40.73 3.86
537 539 2.420058 TGACATCACCGAGCTCTCTA 57.580 50.000 12.85 0.00 0.00 2.43
540 542 1.478631 TGATGACATCACCGAGCTCT 58.521 50.000 14.24 0.00 33.59 4.09
556 558 3.327172 TGGGCATTGTTCAAAATGGTGAT 59.673 39.130 0.00 0.00 37.89 3.06
565 567 1.818959 GCAGCCTGGGCATTGTTCAA 61.819 55.000 14.39 0.00 44.88 2.69
602 604 1.763770 CTCCTGTGGCCAAGAAGGT 59.236 57.895 23.23 0.00 40.61 3.50
632 634 5.301805 CCCTTCTACCAACATTTTCAAGTGT 59.698 40.000 0.00 0.00 0.00 3.55
633 635 5.301805 ACCCTTCTACCAACATTTTCAAGTG 59.698 40.000 0.00 0.00 0.00 3.16
669 671 2.575735 TGATCTTGGGTGCTACATTGGA 59.424 45.455 0.00 0.00 0.00 3.53
670 672 2.684881 GTGATCTTGGGTGCTACATTGG 59.315 50.000 0.00 0.00 0.00 3.16
684 2382 0.951558 GTGGTTGCGGTTGTGATCTT 59.048 50.000 0.00 0.00 0.00 2.40
687 2385 1.227704 TCGTGGTTGCGGTTGTGAT 60.228 52.632 0.00 0.00 0.00 3.06
734 2432 3.069016 TCCTCACGTCACATTGTTGTACT 59.931 43.478 0.00 0.00 33.76 2.73
736 2434 3.069016 AGTCCTCACGTCACATTGTTGTA 59.931 43.478 0.00 0.00 33.76 2.41
843 2542 2.609459 GCCTCTGGTGTAATGATTCGTG 59.391 50.000 0.00 0.00 0.00 4.35
914 2613 4.724399 TCATTTGTTCTTGTTGGAGGCTA 58.276 39.130 0.00 0.00 0.00 3.93
915 2614 3.565307 TCATTTGTTCTTGTTGGAGGCT 58.435 40.909 0.00 0.00 0.00 4.58
934 2633 5.760743 TCGAATGTTTACACACCAATTCTCA 59.239 36.000 0.00 0.00 35.03 3.27
944 2643 7.096551 TGATCTGATCTTCGAATGTTTACACA 58.903 34.615 17.82 0.00 37.31 3.72
948 2647 8.443160 GTTGTTGATCTGATCTTCGAATGTTTA 58.557 33.333 17.82 0.00 0.00 2.01
950 2649 6.427853 TGTTGTTGATCTGATCTTCGAATGTT 59.572 34.615 17.82 0.00 0.00 2.71
957 2656 9.552114 CTAATTGTTGTTGTTGATCTGATCTTC 57.448 33.333 17.82 11.20 0.00 2.87
987 2686 2.115595 GACGTCATCTCGATTGCTCTG 58.884 52.381 11.55 0.00 34.70 3.35
1020 2719 1.296392 CACGCTCAACATCCCTGGA 59.704 57.895 0.00 0.00 0.00 3.86
1023 2722 2.434884 CGCACGCTCAACATCCCT 60.435 61.111 0.00 0.00 0.00 4.20
1030 2729 4.292208 CAACACGCGCACGCTCAA 62.292 61.111 13.70 0.00 45.53 3.02
1041 2740 2.359354 TTGATCCCCCGCAACACG 60.359 61.111 0.00 0.00 43.15 4.49
1045 2744 2.674754 GAGGTTGATCCCCCGCAA 59.325 61.111 0.00 0.00 36.75 4.85
1069 2768 4.678269 ACTGCCGTCGACGTCACG 62.678 66.667 33.49 22.71 37.74 4.35
1076 2775 3.572447 TAGGGGTCACTGCCGTCGA 62.572 63.158 0.00 0.00 0.00 4.20
1078 2777 2.577593 GTAGGGGTCACTGCCGTC 59.422 66.667 0.00 0.00 0.00 4.79
1099 2798 0.111061 TGGTTGTCCAGCTCAAGCAT 59.889 50.000 12.86 0.00 44.51 3.79
1127 2826 3.566523 GTCTTCTTGATGACGTTCGTCT 58.433 45.455 22.49 10.79 33.66 4.18
1261 2960 4.393062 GTCACTAAGTTGTATGCATGCAGT 59.607 41.667 26.69 15.95 0.00 4.40
1282 2981 4.868171 TGCAAGTACGTTAGGATTCATGTC 59.132 41.667 0.00 0.00 0.00 3.06
1361 3060 4.468769 ACCTCCGCGTCCCCCATA 62.469 66.667 4.92 0.00 0.00 2.74
1392 3091 0.035152 ATCCGAGCCATCTGCAACAA 60.035 50.000 0.00 0.00 44.83 2.83
1395 3094 1.153107 CCATCCGAGCCATCTGCAA 60.153 57.895 0.00 0.00 44.83 4.08
1406 3105 0.252057 TGTCCTCCAAGTCCATCCGA 60.252 55.000 0.00 0.00 0.00 4.55
1416 3115 2.721167 CGCTCCGGATGTCCTCCAA 61.721 63.158 3.57 0.00 45.24 3.53
1622 3321 7.692460 TGAGCTGCCATATAATTAAGGAATG 57.308 36.000 0.00 1.46 0.00 2.67
1624 3323 7.944000 TCATTGAGCTGCCATATAATTAAGGAA 59.056 33.333 0.00 0.00 0.00 3.36
1683 3383 0.952984 TGCACGACGGAATGCATGAA 60.953 50.000 0.00 0.00 46.63 2.57
1688 3388 1.439353 ATGGATGCACGACGGAATGC 61.439 55.000 0.00 0.25 42.40 3.56
1689 3389 0.305617 CATGGATGCACGACGGAATG 59.694 55.000 0.00 0.00 0.00 2.67
1690 3390 0.107703 ACATGGATGCACGACGGAAT 60.108 50.000 0.00 0.00 0.00 3.01
1691 3391 0.321210 AACATGGATGCACGACGGAA 60.321 50.000 0.00 0.00 0.00 4.30
1692 3392 0.321210 AAACATGGATGCACGACGGA 60.321 50.000 0.00 0.00 0.00 4.69
1693 3393 0.521291 AAAACATGGATGCACGACGG 59.479 50.000 0.00 0.00 0.00 4.79
1694 3394 1.605500 CAAAACATGGATGCACGACG 58.394 50.000 0.00 0.00 0.00 5.12
1695 3395 1.068333 AGCAAAACATGGATGCACGAC 60.068 47.619 18.01 0.00 42.45 4.34
1696 3396 1.068402 CAGCAAAACATGGATGCACGA 60.068 47.619 18.01 0.00 42.45 4.35
1697 3397 1.342555 CAGCAAAACATGGATGCACG 58.657 50.000 18.01 8.00 42.45 5.34
1698 3398 1.273048 TCCAGCAAAACATGGATGCAC 59.727 47.619 18.01 0.00 40.70 4.57
1699 3399 1.630223 TCCAGCAAAACATGGATGCA 58.370 45.000 18.01 0.00 40.70 3.96
1745 3445 7.420002 TGCATGCATGACTAAATGTAGAAATC 58.580 34.615 30.64 6.47 0.00 2.17
1775 3475 0.590682 AAATTGACGTCGTGCATGCA 59.409 45.000 18.46 18.46 0.00 3.96
1777 3477 2.914861 TGAAAATTGACGTCGTGCATG 58.085 42.857 11.62 0.00 0.00 4.06
1778 3478 3.058293 ACATGAAAATTGACGTCGTGCAT 60.058 39.130 11.62 3.68 32.57 3.96
1779 3479 2.289274 ACATGAAAATTGACGTCGTGCA 59.711 40.909 11.62 1.23 32.57 4.57
1780 3480 2.651703 CACATGAAAATTGACGTCGTGC 59.348 45.455 11.62 0.00 32.57 5.34
1781 3481 3.872354 ACACATGAAAATTGACGTCGTG 58.128 40.909 11.62 11.43 34.97 4.35
1782 3482 4.272504 AGAACACATGAAAATTGACGTCGT 59.727 37.500 11.62 0.00 0.00 4.34
1783 3483 4.772434 AGAACACATGAAAATTGACGTCG 58.228 39.130 11.62 0.00 0.00 5.12
1784 3484 6.074888 CCAAAGAACACATGAAAATTGACGTC 60.075 38.462 9.11 9.11 0.00 4.34
1785 3485 5.748152 CCAAAGAACACATGAAAATTGACGT 59.252 36.000 0.00 0.00 0.00 4.34
1824 3524 7.672983 ATGGTATGAATCGATCAATAACCAC 57.327 36.000 16.91 3.34 44.95 4.16
1825 3525 7.822334 GGTATGGTATGAATCGATCAATAACCA 59.178 37.037 16.89 16.89 45.59 3.67
1875 3575 9.067986 ACTTGGTATTTCTTTCTTTGAGTTAGG 57.932 33.333 0.00 0.00 0.00 2.69
1922 3622 5.047306 ACGCCTCTGCATGCTAGTATATAAA 60.047 40.000 20.33 0.00 37.32 1.40
1939 3639 2.435586 GCTGCACATGACGCCTCT 60.436 61.111 0.00 0.00 0.00 3.69
1976 3676 3.671008 AGACAACCTACATACACGCAA 57.329 42.857 0.00 0.00 0.00 4.85
1979 3679 5.917541 ACAAAAGACAACCTACATACACG 57.082 39.130 0.00 0.00 0.00 4.49
1999 3699 3.181511 CCGCATCTCTTCGCATTAAAACA 60.182 43.478 0.00 0.00 0.00 2.83
2004 3704 0.179086 TGCCGCATCTCTTCGCATTA 60.179 50.000 0.00 0.00 0.00 1.90
2005 3705 1.434622 CTGCCGCATCTCTTCGCATT 61.435 55.000 0.00 0.00 0.00 3.56
2006 3706 1.886313 CTGCCGCATCTCTTCGCAT 60.886 57.895 0.00 0.00 0.00 4.73
2007 3707 2.510012 CTGCCGCATCTCTTCGCA 60.510 61.111 0.00 0.00 0.00 5.10
2008 3708 2.510238 ACTGCCGCATCTCTTCGC 60.510 61.111 0.00 0.00 0.00 4.70
2009 3709 2.169789 CCACTGCCGCATCTCTTCG 61.170 63.158 0.00 0.00 0.00 3.79
2010 3710 0.179062 ATCCACTGCCGCATCTCTTC 60.179 55.000 0.00 0.00 0.00 2.87
2011 3711 0.254178 AATCCACTGCCGCATCTCTT 59.746 50.000 0.00 0.00 0.00 2.85
2012 3712 0.254178 AAATCCACTGCCGCATCTCT 59.746 50.000 0.00 0.00 0.00 3.10
2013 3713 0.379669 CAAATCCACTGCCGCATCTC 59.620 55.000 0.00 0.00 0.00 2.75
2014 3714 0.035152 TCAAATCCACTGCCGCATCT 60.035 50.000 0.00 0.00 0.00 2.90
2015 3715 0.379669 CTCAAATCCACTGCCGCATC 59.620 55.000 0.00 0.00 0.00 3.91
2016 3716 1.033746 CCTCAAATCCACTGCCGCAT 61.034 55.000 0.00 0.00 0.00 4.73
2017 3717 1.675310 CCTCAAATCCACTGCCGCA 60.675 57.895 0.00 0.00 0.00 5.69
2018 3718 2.409870 CCCTCAAATCCACTGCCGC 61.410 63.158 0.00 0.00 0.00 6.53
2019 3719 1.002134 ACCCTCAAATCCACTGCCG 60.002 57.895 0.00 0.00 0.00 5.69
2020 3720 0.038166 TCACCCTCAAATCCACTGCC 59.962 55.000 0.00 0.00 0.00 4.85
2021 3721 1.457346 CTCACCCTCAAATCCACTGC 58.543 55.000 0.00 0.00 0.00 4.40
2022 3722 1.004044 AGCTCACCCTCAAATCCACTG 59.996 52.381 0.00 0.00 0.00 3.66
2023 3723 1.280421 GAGCTCACCCTCAAATCCACT 59.720 52.381 9.40 0.00 0.00 4.00
2024 3724 1.003580 TGAGCTCACCCTCAAATCCAC 59.996 52.381 13.74 0.00 38.81 4.02
2025 3725 1.361204 TGAGCTCACCCTCAAATCCA 58.639 50.000 13.74 0.00 38.81 3.41
2026 3726 2.092753 TCATGAGCTCACCCTCAAATCC 60.093 50.000 20.97 0.00 44.34 3.01
2027 3727 2.941720 GTCATGAGCTCACCCTCAAATC 59.058 50.000 20.97 0.00 44.34 2.17
2028 3728 2.306805 TGTCATGAGCTCACCCTCAAAT 59.693 45.455 20.97 0.00 44.34 2.32
2029 3729 1.699083 TGTCATGAGCTCACCCTCAAA 59.301 47.619 20.97 0.00 44.34 2.69
2030 3730 1.351076 TGTCATGAGCTCACCCTCAA 58.649 50.000 20.97 0.00 44.34 3.02
2031 3731 1.576577 ATGTCATGAGCTCACCCTCA 58.423 50.000 20.97 15.74 45.16 3.86
2032 3732 5.046735 ACATATATGTCATGAGCTCACCCTC 60.047 44.000 20.97 10.51 35.87 4.30
2033 3733 4.842948 ACATATATGTCATGAGCTCACCCT 59.157 41.667 20.97 0.00 35.87 4.34
2034 3734 5.157940 ACATATATGTCATGAGCTCACCC 57.842 43.478 20.97 10.30 35.87 4.61
2035 3735 6.462500 AGAACATATATGTCATGAGCTCACC 58.538 40.000 20.97 10.69 40.80 4.02
2036 3736 7.959689 AAGAACATATATGTCATGAGCTCAC 57.040 36.000 20.97 7.27 40.80 3.51
2062 3762 9.914834 AGGACCTGCATTAATATAACTAACAAA 57.085 29.630 0.00 0.00 0.00 2.83
2063 3763 9.914834 AAGGACCTGCATTAATATAACTAACAA 57.085 29.630 0.00 0.00 0.00 2.83
2064 3764 9.914834 AAAGGACCTGCATTAATATAACTAACA 57.085 29.630 0.00 0.00 0.00 2.41
2067 3767 9.914834 ACAAAAGGACCTGCATTAATATAACTA 57.085 29.630 0.00 0.00 0.00 2.24
2068 3768 8.686334 CACAAAAGGACCTGCATTAATATAACT 58.314 33.333 0.00 0.00 0.00 2.24
2069 3769 8.466798 ACACAAAAGGACCTGCATTAATATAAC 58.533 33.333 0.00 0.00 0.00 1.89
2070 3770 8.588290 ACACAAAAGGACCTGCATTAATATAA 57.412 30.769 0.00 0.00 0.00 0.98
2071 3771 8.588290 AACACAAAAGGACCTGCATTAATATA 57.412 30.769 0.00 0.00 0.00 0.86
2072 3772 7.363793 GGAACACAAAAGGACCTGCATTAATAT 60.364 37.037 0.00 0.00 0.00 1.28
2073 3773 6.071616 GGAACACAAAAGGACCTGCATTAATA 60.072 38.462 0.00 0.00 0.00 0.98
2074 3774 5.279456 GGAACACAAAAGGACCTGCATTAAT 60.279 40.000 0.00 0.00 0.00 1.40
2075 3775 4.038642 GGAACACAAAAGGACCTGCATTAA 59.961 41.667 0.00 0.00 0.00 1.40
2076 3776 3.572255 GGAACACAAAAGGACCTGCATTA 59.428 43.478 0.00 0.00 0.00 1.90
2077 3777 2.365293 GGAACACAAAAGGACCTGCATT 59.635 45.455 0.00 0.00 0.00 3.56
2078 3778 1.963515 GGAACACAAAAGGACCTGCAT 59.036 47.619 0.00 0.00 0.00 3.96
2079 3779 1.398692 GGAACACAAAAGGACCTGCA 58.601 50.000 0.00 0.00 0.00 4.41
2080 3780 0.310854 CGGAACACAAAAGGACCTGC 59.689 55.000 0.00 0.00 0.00 4.85
2081 3781 1.333619 CACGGAACACAAAAGGACCTG 59.666 52.381 0.00 0.00 0.00 4.00
2082 3782 1.675552 CACGGAACACAAAAGGACCT 58.324 50.000 0.00 0.00 0.00 3.85
2083 3783 0.030235 GCACGGAACACAAAAGGACC 59.970 55.000 0.00 0.00 0.00 4.46
2084 3784 0.736053 TGCACGGAACACAAAAGGAC 59.264 50.000 0.00 0.00 0.00 3.85
2085 3785 1.606668 GATGCACGGAACACAAAAGGA 59.393 47.619 0.00 0.00 0.00 3.36
2086 3786 1.336440 TGATGCACGGAACACAAAAGG 59.664 47.619 0.00 0.00 0.00 3.11
2087 3787 2.772568 TGATGCACGGAACACAAAAG 57.227 45.000 0.00 0.00 0.00 2.27
2088 3788 2.620585 TCATGATGCACGGAACACAAAA 59.379 40.909 0.00 0.00 0.00 2.44
2089 3789 2.225467 TCATGATGCACGGAACACAAA 58.775 42.857 0.00 0.00 0.00 2.83
2090 3790 1.889545 TCATGATGCACGGAACACAA 58.110 45.000 0.00 0.00 0.00 3.33
2091 3791 1.738908 CATCATGATGCACGGAACACA 59.261 47.619 22.20 0.00 31.39 3.72
2092 3792 2.463553 CATCATGATGCACGGAACAC 57.536 50.000 22.20 0.00 31.39 3.32
2102 3802 8.724229 TCCGAATAAAATTCTAGCATCATGATG 58.276 33.333 28.04 28.04 41.60 3.07
2103 3803 8.853077 TCCGAATAAAATTCTAGCATCATGAT 57.147 30.769 1.18 1.18 0.00 2.45
2104 3804 8.675705 TTCCGAATAAAATTCTAGCATCATGA 57.324 30.769 0.00 0.00 0.00 3.07
2105 3805 9.903682 ATTTCCGAATAAAATTCTAGCATCATG 57.096 29.630 0.00 0.00 0.00 3.07
2106 3806 9.903682 CATTTCCGAATAAAATTCTAGCATCAT 57.096 29.630 0.00 0.00 0.00 2.45
2107 3807 8.902806 ACATTTCCGAATAAAATTCTAGCATCA 58.097 29.630 0.00 0.00 0.00 3.07
2108 3808 9.736023 AACATTTCCGAATAAAATTCTAGCATC 57.264 29.630 0.00 0.00 0.00 3.91
2113 3813 9.493206 GCGTTAACATTTCCGAATAAAATTCTA 57.507 29.630 6.39 0.00 0.00 2.10
2114 3814 7.486870 GGCGTTAACATTTCCGAATAAAATTCT 59.513 33.333 6.39 0.00 0.00 2.40
2115 3815 7.253850 GGGCGTTAACATTTCCGAATAAAATTC 60.254 37.037 6.39 0.00 0.00 2.17
2116 3816 6.532302 GGGCGTTAACATTTCCGAATAAAATT 59.468 34.615 6.39 0.00 0.00 1.82
2117 3817 6.037726 GGGCGTTAACATTTCCGAATAAAAT 58.962 36.000 6.39 0.00 0.00 1.82
2384 4086 2.994995 ACGTGTGGGCGAGATGGA 60.995 61.111 0.00 0.00 35.59 3.41
2530 4234 1.070786 CAGTTGCCGTGTACCCTGT 59.929 57.895 0.00 0.00 0.00 4.00
2568 4272 4.222145 ACTCGGTAAAAGAGAGTTGCCATA 59.778 41.667 0.00 0.00 41.93 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.