Multiple sequence alignment - TraesCS2B01G280600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G280600 chr2B 100.000 6964 0 0 1 6964 387109560 387102597 0.000000e+00 12861.0
1 TraesCS2B01G280600 chr2B 87.368 190 17 6 4908 5091 708240684 708240496 1.970000e-50 211.0
2 TraesCS2B01G280600 chr2B 97.368 76 2 0 318 393 387109175 387109100 5.670000e-26 130.0
3 TraesCS2B01G280600 chr2B 97.368 76 2 0 386 461 387109243 387109168 5.670000e-26 130.0
4 TraesCS2B01G280600 chr2B 100.000 55 0 0 6910 6964 387087992 387087938 1.240000e-17 102.0
5 TraesCS2B01G280600 chr2B 84.444 90 12 2 5267 5356 775106366 775106453 3.460000e-13 87.9
6 TraesCS2B01G280600 chr2B 95.455 44 2 0 960 1003 130141978 130141935 3.480000e-08 71.3
7 TraesCS2B01G280600 chr2D 93.910 3366 132 47 491 3828 318568176 318564856 0.000000e+00 5012.0
8 TraesCS2B01G280600 chr2D 92.883 2178 85 32 3959 6102 318564846 318562705 0.000000e+00 3099.0
9 TraesCS2B01G280600 chr2D 93.875 702 31 8 6115 6814 318562445 318561754 0.000000e+00 1048.0
10 TraesCS2B01G280600 chr2D 93.571 140 3 1 130 269 318568525 318568392 3.290000e-48 204.0
11 TraesCS2B01G280600 chr2D 91.729 133 8 3 261 393 318568372 318568243 1.540000e-41 182.0
12 TraesCS2B01G280600 chr2D 96.386 83 2 1 6828 6909 318561579 318561497 1.220000e-27 135.0
13 TraesCS2B01G280600 chr2D 89.655 87 9 0 3 89 318568611 318568525 2.050000e-20 111.0
14 TraesCS2B01G280600 chr2A 96.494 2139 45 15 1713 3829 412471647 412473777 0.000000e+00 3507.0
15 TraesCS2B01G280600 chr2A 94.952 2199 65 13 3941 6102 412473774 412475963 0.000000e+00 3404.0
16 TraesCS2B01G280600 chr2A 94.337 1236 28 13 491 1714 412470338 412471543 0.000000e+00 1857.0
17 TraesCS2B01G280600 chr2A 92.059 340 13 7 6149 6487 412476223 412476549 3.800000e-127 466.0
18 TraesCS2B01G280600 chr2A 91.915 235 9 8 130 360 412469597 412469825 3.130000e-83 320.0
19 TraesCS2B01G280600 chr2A 97.458 118 3 0 3826 3943 175483356 175483473 1.180000e-47 202.0
20 TraesCS2B01G280600 chr2A 89.655 87 9 0 3 89 412469511 412469597 2.050000e-20 111.0
21 TraesCS2B01G280600 chr2A 97.674 43 1 0 386 428 412469783 412469825 2.690000e-09 75.0
22 TraesCS2B01G280600 chr2A 93.182 44 3 0 960 1003 377016221 377016178 1.620000e-06 65.8
23 TraesCS2B01G280600 chr7D 93.252 163 7 2 4913 5071 566026575 566026737 3.250000e-58 237.0
24 TraesCS2B01G280600 chr5D 92.638 163 8 1 4913 5071 461072763 461072601 1.510000e-56 231.0
25 TraesCS2B01G280600 chr7A 90.698 172 11 3 4904 5071 652302162 652302332 2.530000e-54 224.0
26 TraesCS2B01G280600 chr7A 91.781 73 4 2 491 562 23555548 23555477 4.440000e-17 100.0
27 TraesCS2B01G280600 chr7A 88.000 75 2 4 491 563 688310229 688310298 1.610000e-11 82.4
28 TraesCS2B01G280600 chr7A 97.674 43 1 0 961 1003 23555475 23555433 2.690000e-09 75.0
29 TraesCS2B01G280600 chr4D 91.566 166 9 2 4912 5072 378279919 378280084 2.530000e-54 224.0
30 TraesCS2B01G280600 chr4D 93.333 135 8 1 3826 3960 15768159 15768026 1.530000e-46 198.0
31 TraesCS2B01G280600 chr3A 90.909 165 11 2 4911 5071 600920853 600921017 1.180000e-52 219.0
32 TraesCS2B01G280600 chr3A 96.800 125 4 0 3822 3946 455781532 455781656 7.080000e-50 209.0
33 TraesCS2B01G280600 chr3A 96.226 53 2 0 6910 6962 708848039 708847987 3.460000e-13 87.9
34 TraesCS2B01G280600 chr1A 98.333 120 2 0 3823 3942 23099110 23098991 1.970000e-50 211.0
35 TraesCS2B01G280600 chr1A 94.444 126 7 0 3826 3951 266770380 266770505 1.980000e-45 195.0
36 TraesCS2B01G280600 chr7B 88.636 176 15 3 4908 5079 41526902 41526728 7.080000e-50 209.0
37 TraesCS2B01G280600 chr7B 95.041 121 6 0 3823 3943 290000917 290001037 2.560000e-44 191.0
38 TraesCS2B01G280600 chr7B 98.148 54 0 1 6910 6962 621785023 621785076 7.440000e-15 93.5
39 TraesCS2B01G280600 chr7B 98.148 54 0 1 6910 6962 621788792 621788845 7.440000e-15 93.5
40 TraesCS2B01G280600 chr6D 93.023 129 9 0 3826 3954 9063690 9063562 9.220000e-44 189.0
41 TraesCS2B01G280600 chr3D 94.958 119 6 0 3825 3943 182423694 182423812 3.320000e-43 187.0
42 TraesCS2B01G280600 chr1D 92.366 131 10 0 3812 3942 471126475 471126605 3.320000e-43 187.0
43 TraesCS2B01G280600 chr4A 98.148 54 0 1 6910 6962 736438509 736438456 7.440000e-15 93.5
44 TraesCS2B01G280600 chr4A 96.364 55 1 1 6909 6962 736455381 736455327 9.620000e-14 89.8
45 TraesCS2B01G280600 chr4A 97.727 44 1 0 960 1003 706702715 706702758 7.490000e-10 76.8
46 TraesCS2B01G280600 chr4A 93.182 44 3 0 960 1003 677473886 677473929 1.620000e-06 65.8
47 TraesCS2B01G280600 chr4A 91.304 46 2 2 28 72 498691140 498691184 2.100000e-05 62.1
48 TraesCS2B01G280600 chr3B 96.364 55 2 0 6910 6964 789409894 789409840 2.670000e-14 91.6
49 TraesCS2B01G280600 chr1B 95.455 44 2 0 960 1003 544766823 544766780 3.480000e-08 71.3
50 TraesCS2B01G280600 chr4B 100.000 31 0 0 42 72 656974915 656974885 2.710000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G280600 chr2B 387102597 387109560 6963 True 4373.666667 12861 98.245333 1 6964 3 chr2B.!!$R4 6963
1 TraesCS2B01G280600 chr2D 318561497 318568611 7114 True 1398.714286 5012 93.144143 3 6909 7 chr2D.!!$R1 6906
2 TraesCS2B01G280600 chr2A 412469511 412476549 7038 False 1391.428571 3507 93.869429 3 6487 7 chr2A.!!$F2 6484

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
122 123 0.037447 TGGAACACCCGCATGAATGA 59.963 50.000 0.00 0.00 37.93 2.57 F
953 1435 0.107945 ACAAGGAATCTCGCTGCCTC 60.108 55.000 0.00 0.00 0.00 4.70 F
954 1436 0.177604 CAAGGAATCTCGCTGCCTCT 59.822 55.000 0.00 0.00 0.00 3.69 F
1490 1985 0.321475 CACCCGGCGGTTTAGGTAAA 60.321 55.000 26.32 0.00 42.04 2.01 F
1491 1986 0.399833 ACCCGGCGGTTTAGGTAAAA 59.600 50.000 26.32 0.00 40.58 1.52 F
2119 2741 0.544697 GCCGTATCTTTCCCCCAGAA 59.455 55.000 0.00 0.00 0.00 3.02 F
3145 3778 0.961019 AATTGCGCTGACCACAATGT 59.039 45.000 9.73 0.00 34.38 2.71 F
3258 3891 0.987294 ATTGGGGAGAGTGTGGACAG 59.013 55.000 0.00 0.00 0.00 3.51 F
3681 4324 1.405821 GTATGTCACCAGTCCCTCGAG 59.594 57.143 5.13 5.13 0.00 4.04 F
5109 5771 1.915489 TGGGCATATGAGAACAGTGGT 59.085 47.619 6.97 0.00 0.00 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1394 1889 0.103026 CGTTGGGATCATCGAGCAGA 59.897 55.000 0.0 0.0 38.07 4.26 R
1942 2563 1.613630 TGTGAGGAGGGAGGAAGGC 60.614 63.158 0.0 0.0 0.00 4.35 R
2384 3013 6.611613 TTTCTGATGAGTATGGAAGACAGT 57.388 37.500 0.0 0.0 0.00 3.55 R
3258 3891 1.310904 TTTCAAAGTACCCACCACGC 58.689 50.000 0.0 0.0 0.00 5.34 R
3446 4088 4.205587 CAAGGCTAGGAAATTCTGATGCT 58.794 43.478 0.0 0.0 0.00 3.79 R
4007 4651 0.376852 GCGCGATTGATGCAACCTTA 59.623 50.000 12.1 0.0 0.00 2.69 R
4156 4800 1.202770 ACAGGGAAAACGAGGTTCTGG 60.203 52.381 0.0 0.0 0.00 3.86 R
4423 5071 1.493772 TACTGCAACGTCGGTTTGAG 58.506 50.000 0.0 0.0 32.98 3.02 R
5448 6110 0.535102 CTTCGTGTGGAAACAGGGCT 60.535 55.000 0.0 0.0 44.46 5.19 R
6818 7754 0.037326 AGATGAGGTTTCTTGCGCGA 60.037 50.000 12.1 0.0 0.00 5.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 1.035139 TTTACTCGGCGGGATACTCC 58.965 55.000 16.65 0.00 35.23 3.85
88 89 5.755861 CAGTTAGAAATACCCTAAGAGCAGC 59.244 44.000 0.00 0.00 0.00 5.25
89 90 5.663556 AGTTAGAAATACCCTAAGAGCAGCT 59.336 40.000 0.00 0.00 0.00 4.24
90 91 6.157123 AGTTAGAAATACCCTAAGAGCAGCTT 59.843 38.462 0.00 0.00 40.68 3.74
91 92 4.775236 AGAAATACCCTAAGAGCAGCTTG 58.225 43.478 0.00 0.00 37.42 4.01
92 93 3.567478 AATACCCTAAGAGCAGCTTGG 57.433 47.619 0.00 0.00 37.42 3.61
111 112 3.426615 TGGGACAACATAATGGAACACC 58.573 45.455 0.00 0.00 36.40 4.16
112 113 3.816118 TGGGACAACATAATGGAACACCC 60.816 47.826 0.00 0.00 36.40 4.61
121 122 2.565647 TGGAACACCCGCATGAATG 58.434 52.632 0.00 0.00 37.93 2.67
122 123 0.037447 TGGAACACCCGCATGAATGA 59.963 50.000 0.00 0.00 37.93 2.57
123 124 1.173043 GGAACACCCGCATGAATGAA 58.827 50.000 0.00 0.00 0.00 2.57
124 125 1.133025 GGAACACCCGCATGAATGAAG 59.867 52.381 0.00 0.00 0.00 3.02
125 126 1.812571 GAACACCCGCATGAATGAAGT 59.187 47.619 0.00 0.00 0.00 3.01
126 127 1.167851 ACACCCGCATGAATGAAGTG 58.832 50.000 0.00 0.00 33.01 3.16
127 128 1.271325 ACACCCGCATGAATGAAGTGA 60.271 47.619 0.00 0.00 31.96 3.41
128 129 1.811965 CACCCGCATGAATGAAGTGAA 59.188 47.619 0.00 0.00 0.00 3.18
172 173 5.722021 ACCTGTTTGTTTCACCCATATTC 57.278 39.130 0.00 0.00 0.00 1.75
181 182 4.563337 TTCACCCATATTCTCGAGTACG 57.437 45.455 13.13 0.00 41.26 3.67
182 183 3.548770 TCACCCATATTCTCGAGTACGT 58.451 45.455 13.13 0.00 40.69 3.57
183 184 4.707105 TCACCCATATTCTCGAGTACGTA 58.293 43.478 13.13 0.00 40.69 3.57
184 185 4.512944 TCACCCATATTCTCGAGTACGTAC 59.487 45.833 18.10 18.10 40.69 3.67
185 186 4.514441 CACCCATATTCTCGAGTACGTACT 59.486 45.833 27.71 27.71 40.69 2.73
186 187 5.698089 CACCCATATTCTCGAGTACGTACTA 59.302 44.000 27.44 12.67 40.69 1.82
317 344 1.064240 TCAGCAAGCACCATGATCCAT 60.064 47.619 0.00 0.00 0.00 3.41
318 345 1.337071 CAGCAAGCACCATGATCCATC 59.663 52.381 0.00 0.00 0.00 3.51
319 346 0.672342 GCAAGCACCATGATCCATCC 59.328 55.000 0.00 0.00 0.00 3.51
320 347 1.325355 CAAGCACCATGATCCATCCC 58.675 55.000 0.00 0.00 0.00 3.85
321 348 1.133575 CAAGCACCATGATCCATCCCT 60.134 52.381 0.00 0.00 0.00 4.20
322 349 2.107031 CAAGCACCATGATCCATCCCTA 59.893 50.000 0.00 0.00 0.00 3.53
323 350 1.983691 AGCACCATGATCCATCCCTAG 59.016 52.381 0.00 0.00 0.00 3.02
324 351 1.701847 GCACCATGATCCATCCCTAGT 59.298 52.381 0.00 0.00 0.00 2.57
325 352 2.107204 GCACCATGATCCATCCCTAGTT 59.893 50.000 0.00 0.00 0.00 2.24
326 353 3.748083 CACCATGATCCATCCCTAGTTG 58.252 50.000 0.00 0.00 0.00 3.16
327 354 2.713167 ACCATGATCCATCCCTAGTTGG 59.287 50.000 0.00 0.00 34.59 3.77
328 355 2.713167 CCATGATCCATCCCTAGTTGGT 59.287 50.000 0.00 0.00 34.84 3.67
329 356 3.139025 CCATGATCCATCCCTAGTTGGTT 59.861 47.826 0.00 0.00 34.84 3.67
330 357 4.392940 CATGATCCATCCCTAGTTGGTTC 58.607 47.826 0.00 5.90 34.84 3.62
331 358 3.736094 TGATCCATCCCTAGTTGGTTCT 58.264 45.455 12.36 0.00 34.58 3.01
332 359 3.455910 TGATCCATCCCTAGTTGGTTCTG 59.544 47.826 12.36 0.38 34.58 3.02
333 360 3.199442 TCCATCCCTAGTTGGTTCTGA 57.801 47.619 4.16 0.00 34.84 3.27
334 361 3.526899 TCCATCCCTAGTTGGTTCTGAA 58.473 45.455 4.16 0.00 34.84 3.02
335 362 4.111577 TCCATCCCTAGTTGGTTCTGAAT 58.888 43.478 0.00 0.00 34.84 2.57
336 363 4.540099 TCCATCCCTAGTTGGTTCTGAATT 59.460 41.667 0.00 0.00 34.84 2.17
337 364 5.015178 TCCATCCCTAGTTGGTTCTGAATTT 59.985 40.000 0.00 0.00 34.84 1.82
338 365 5.126061 CCATCCCTAGTTGGTTCTGAATTTG 59.874 44.000 0.00 0.00 0.00 2.32
339 366 4.079253 TCCCTAGTTGGTTCTGAATTTGC 58.921 43.478 0.00 0.00 0.00 3.68
340 367 3.826157 CCCTAGTTGGTTCTGAATTTGCA 59.174 43.478 0.00 0.00 0.00 4.08
341 368 4.082571 CCCTAGTTGGTTCTGAATTTGCAG 60.083 45.833 0.00 0.00 37.24 4.41
342 369 4.520492 CCTAGTTGGTTCTGAATTTGCAGT 59.480 41.667 0.00 0.00 37.20 4.40
343 370 4.311816 AGTTGGTTCTGAATTTGCAGTG 57.688 40.909 0.00 0.00 37.20 3.66
344 371 3.068590 AGTTGGTTCTGAATTTGCAGTGG 59.931 43.478 0.00 0.00 37.20 4.00
345 372 2.942804 TGGTTCTGAATTTGCAGTGGA 58.057 42.857 0.00 0.00 37.20 4.02
346 373 3.499338 TGGTTCTGAATTTGCAGTGGAT 58.501 40.909 0.00 0.00 37.20 3.41
347 374 3.256383 TGGTTCTGAATTTGCAGTGGATG 59.744 43.478 0.00 0.00 37.20 3.51
348 375 3.256631 GGTTCTGAATTTGCAGTGGATGT 59.743 43.478 0.00 0.00 37.20 3.06
349 376 4.232221 GTTCTGAATTTGCAGTGGATGTG 58.768 43.478 0.00 0.00 37.20 3.21
350 377 2.821378 TCTGAATTTGCAGTGGATGTGG 59.179 45.455 0.00 0.00 37.20 4.17
351 378 2.821378 CTGAATTTGCAGTGGATGTGGA 59.179 45.455 0.00 0.00 0.00 4.02
352 379 3.433343 TGAATTTGCAGTGGATGTGGAT 58.567 40.909 0.00 0.00 0.00 3.41
353 380 4.598022 TGAATTTGCAGTGGATGTGGATA 58.402 39.130 0.00 0.00 0.00 2.59
354 381 4.398988 TGAATTTGCAGTGGATGTGGATAC 59.601 41.667 0.00 0.00 0.00 2.24
355 382 9.855776 TCTGAATTTGCAGTGGATGTGGATACA 62.856 40.741 0.00 0.00 39.91 2.29
373 400 7.333288 GGATACAAAGAATGAAAACAAACGG 57.667 36.000 0.00 0.00 0.00 4.44
374 401 6.364976 GGATACAAAGAATGAAAACAAACGGG 59.635 38.462 0.00 0.00 0.00 5.28
375 402 4.438148 ACAAAGAATGAAAACAAACGGGG 58.562 39.130 0.00 0.00 0.00 5.73
376 403 3.744238 AAGAATGAAAACAAACGGGGG 57.256 42.857 0.00 0.00 0.00 5.40
377 404 2.952116 AGAATGAAAACAAACGGGGGA 58.048 42.857 0.00 0.00 0.00 4.81
378 405 3.301274 AGAATGAAAACAAACGGGGGAA 58.699 40.909 0.00 0.00 0.00 3.97
379 406 3.901222 AGAATGAAAACAAACGGGGGAAT 59.099 39.130 0.00 0.00 0.00 3.01
380 407 4.346709 AGAATGAAAACAAACGGGGGAATT 59.653 37.500 0.00 0.00 0.00 2.17
381 408 4.698201 ATGAAAACAAACGGGGGAATTT 57.302 36.364 0.00 0.00 0.00 1.82
382 409 3.798202 TGAAAACAAACGGGGGAATTTG 58.202 40.909 0.00 0.00 40.83 2.32
384 411 2.900716 AACAAACGGGGGAATTTGTG 57.099 45.000 3.31 0.00 45.86 3.33
428 455 3.270027 CAGTGGATGCGGATACAAAGAA 58.730 45.455 2.23 0.00 0.00 2.52
429 456 3.879295 CAGTGGATGCGGATACAAAGAAT 59.121 43.478 2.23 0.00 0.00 2.40
439 883 6.419413 TGCGGATACAAAGAATGAAAACAAAC 59.581 34.615 0.00 0.00 0.00 2.93
444 888 3.744238 AAGAATGAAAACAAACGGGGG 57.256 42.857 0.00 0.00 0.00 5.40
472 916 4.400884 TGTGTTCCTAGTGTTGTTGCAATT 59.599 37.500 0.59 0.00 0.00 2.32
473 917 5.105554 TGTGTTCCTAGTGTTGTTGCAATTT 60.106 36.000 0.59 0.00 0.00 1.82
475 919 6.416750 GTGTTCCTAGTGTTGTTGCAATTTAC 59.583 38.462 0.59 1.92 0.00 2.01
478 922 7.667043 TCCTAGTGTTGTTGCAATTTACTAG 57.333 36.000 22.67 22.67 37.15 2.57
479 923 6.148811 TCCTAGTGTTGTTGCAATTTACTAGC 59.851 38.462 23.46 5.44 36.47 3.42
481 925 5.519722 AGTGTTGTTGCAATTTACTAGCAC 58.480 37.500 0.59 4.36 38.11 4.40
482 926 4.679654 GTGTTGTTGCAATTTACTAGCACC 59.320 41.667 0.59 0.00 38.11 5.01
484 928 5.765677 TGTTGTTGCAATTTACTAGCACCTA 59.234 36.000 0.59 0.00 38.11 3.08
485 929 6.072728 TGTTGTTGCAATTTACTAGCACCTAG 60.073 38.462 0.59 0.00 38.11 3.02
486 930 5.800296 TGTTGCAATTTACTAGCACCTAGA 58.200 37.500 0.59 0.00 38.11 2.43
487 931 5.642063 TGTTGCAATTTACTAGCACCTAGAC 59.358 40.000 0.59 0.00 38.11 2.59
488 932 5.414789 TGCAATTTACTAGCACCTAGACA 57.585 39.130 6.29 0.00 37.49 3.41
489 933 5.800296 TGCAATTTACTAGCACCTAGACAA 58.200 37.500 6.29 0.00 37.49 3.18
518 999 5.364446 TCAACACTACCCTGTTTCAGTCTTA 59.636 40.000 0.00 0.00 31.73 2.10
573 1054 6.547510 ACCATTTTGCATCTTTCCTATCCTAC 59.452 38.462 0.00 0.00 0.00 3.18
618 1099 7.284716 AGTTACGTGTGTGAAGATGGATAGATA 59.715 37.037 0.00 0.00 0.00 1.98
626 1107 7.980662 GTGTGAAGATGGATAGATAGATGGATG 59.019 40.741 0.00 0.00 0.00 3.51
650 1131 3.679389 TGGAGACAAGGAAGAGAATTGC 58.321 45.455 0.00 0.00 37.44 3.56
788 1269 2.289320 CCATTCCCGCTCTTATCTCCAG 60.289 54.545 0.00 0.00 0.00 3.86
844 1326 2.424956 GGGCGCAAATCTCATTCTCTTT 59.575 45.455 10.83 0.00 0.00 2.52
853 1335 1.129998 CTCATTCTCTTTGGTGCGCAG 59.870 52.381 12.22 0.00 0.00 5.18
913 1395 1.333524 CCGCGCTTGATTAATCTGCAG 60.334 52.381 23.44 7.63 0.00 4.41
953 1435 0.107945 ACAAGGAATCTCGCTGCCTC 60.108 55.000 0.00 0.00 0.00 4.70
954 1436 0.177604 CAAGGAATCTCGCTGCCTCT 59.822 55.000 0.00 0.00 0.00 3.69
1046 1529 2.160853 ACACCCACCTTTCCCCTCC 61.161 63.158 0.00 0.00 0.00 4.30
1090 1573 2.762234 CCGTCCGGAGAAGACGAGG 61.762 68.421 3.06 0.00 37.50 4.63
1282 1765 4.426313 CCTTCCCCCGCCAGGTTC 62.426 72.222 0.00 0.00 35.12 3.62
1283 1766 4.778143 CTTCCCCCGCCAGGTTCG 62.778 72.222 0.00 0.00 35.12 3.95
1341 1829 0.404040 TGATTGGAGGTTGGTGGGTC 59.596 55.000 0.00 0.00 0.00 4.46
1394 1889 1.379576 GCTCTGCCAGGCTCCATTT 60.380 57.895 14.15 0.00 0.00 2.32
1472 1967 2.052690 GCACTACCTCTCCCTCGCA 61.053 63.158 0.00 0.00 0.00 5.10
1490 1985 0.321475 CACCCGGCGGTTTAGGTAAA 60.321 55.000 26.32 0.00 42.04 2.01
1491 1986 0.399833 ACCCGGCGGTTTAGGTAAAA 59.600 50.000 26.32 0.00 40.58 1.52
1644 2140 3.944015 GGATAACAAATGCAGAGCTGACT 59.056 43.478 0.85 0.00 0.00 3.41
1650 2146 6.336842 ACAAATGCAGAGCTGACTATTTTT 57.663 33.333 0.85 0.00 0.00 1.94
1790 2411 8.535335 ACTGACACAACTTGTAATCTATCTCAT 58.465 33.333 0.00 0.00 39.17 2.90
1942 2563 4.320057 GCACATCTCAGTTTTTCTGGTCAG 60.320 45.833 0.00 0.00 43.76 3.51
1979 2600 7.125053 TCCTCACACTGGTATTGTATTGTATGA 59.875 37.037 0.00 0.00 0.00 2.15
2108 2729 4.163458 TGGTTATCCTTGAAAGCCGTATCT 59.837 41.667 0.00 0.00 34.23 1.98
2111 2732 8.541384 TGGTTATCCTTGAAAGCCGTATCTTTC 61.541 40.741 12.36 12.36 41.72 2.62
2117 2739 0.546598 AAGCCGTATCTTTCCCCCAG 59.453 55.000 0.00 0.00 0.00 4.45
2119 2741 0.544697 GCCGTATCTTTCCCCCAGAA 59.455 55.000 0.00 0.00 0.00 3.02
2436 3065 6.531021 AGATGTAACCAATTAGGGGATTACG 58.469 40.000 0.00 0.00 43.89 3.18
2503 3132 2.768527 TCAGACCCTTGCCTATCTTCAG 59.231 50.000 0.00 0.00 0.00 3.02
2609 3238 7.446001 AAATTGTTTGTTGGATGTTTTGTGT 57.554 28.000 0.00 0.00 0.00 3.72
3080 3712 6.380095 AACTACTACAAGAGATTAGGCTCG 57.620 41.667 0.00 0.00 39.87 5.03
3105 3737 7.571244 CGTGCTGTGTTACACTGAAAGATAATT 60.571 37.037 23.14 0.00 35.76 1.40
3145 3778 0.961019 AATTGCGCTGACCACAATGT 59.039 45.000 9.73 0.00 34.38 2.71
3258 3891 0.987294 ATTGGGGAGAGTGTGGACAG 59.013 55.000 0.00 0.00 0.00 3.51
3681 4324 1.405821 GTATGTCACCAGTCCCTCGAG 59.594 57.143 5.13 5.13 0.00 4.04
3805 4448 7.783090 TTCCATTGTACAAACGTTTACACTA 57.217 32.000 14.20 11.28 0.00 2.74
3809 4452 7.112426 CCATTGTACAAACGTTTACACTAAAGC 59.888 37.037 14.20 0.00 0.00 3.51
3835 4478 3.193395 TGGTAACACATACTCCCTCCA 57.807 47.619 0.00 0.00 46.17 3.86
3836 4479 3.731431 TGGTAACACATACTCCCTCCAT 58.269 45.455 0.00 0.00 46.17 3.41
3837 4480 3.709653 TGGTAACACATACTCCCTCCATC 59.290 47.826 0.00 0.00 46.17 3.51
3838 4481 3.071167 GGTAACACATACTCCCTCCATCC 59.929 52.174 0.00 0.00 34.74 3.51
3839 4482 2.568546 ACACATACTCCCTCCATCCA 57.431 50.000 0.00 0.00 0.00 3.41
3840 4483 2.402564 ACACATACTCCCTCCATCCAG 58.597 52.381 0.00 0.00 0.00 3.86
3841 4484 2.023015 ACACATACTCCCTCCATCCAGA 60.023 50.000 0.00 0.00 0.00 3.86
3842 4485 3.041211 CACATACTCCCTCCATCCAGAA 58.959 50.000 0.00 0.00 0.00 3.02
3843 4486 3.455910 CACATACTCCCTCCATCCAGAAA 59.544 47.826 0.00 0.00 0.00 2.52
3844 4487 4.103785 CACATACTCCCTCCATCCAGAAAT 59.896 45.833 0.00 0.00 0.00 2.17
3845 4488 5.307976 CACATACTCCCTCCATCCAGAAATA 59.692 44.000 0.00 0.00 0.00 1.40
3846 4489 5.308237 ACATACTCCCTCCATCCAGAAATAC 59.692 44.000 0.00 0.00 0.00 1.89
3847 4490 4.014273 ACTCCCTCCATCCAGAAATACT 57.986 45.455 0.00 0.00 0.00 2.12
3848 4491 4.375313 ACTCCCTCCATCCAGAAATACTT 58.625 43.478 0.00 0.00 0.00 2.24
3849 4492 4.164988 ACTCCCTCCATCCAGAAATACTTG 59.835 45.833 0.00 0.00 0.00 3.16
3850 4493 4.111577 TCCCTCCATCCAGAAATACTTGT 58.888 43.478 0.00 0.00 0.00 3.16
3851 4494 4.164221 TCCCTCCATCCAGAAATACTTGTC 59.836 45.833 0.00 0.00 0.00 3.18
3852 4495 4.455606 CCTCCATCCAGAAATACTTGTCC 58.544 47.826 0.00 0.00 0.00 4.02
3853 4496 4.080356 CCTCCATCCAGAAATACTTGTCCA 60.080 45.833 0.00 0.00 0.00 4.02
3854 4497 5.500234 CTCCATCCAGAAATACTTGTCCAA 58.500 41.667 0.00 0.00 0.00 3.53
3855 4498 5.500234 TCCATCCAGAAATACTTGTCCAAG 58.500 41.667 5.51 5.51 43.79 3.61
3856 4499 4.641989 CCATCCAGAAATACTTGTCCAAGG 59.358 45.833 11.45 0.00 42.53 3.61
3857 4500 5.500234 CATCCAGAAATACTTGTCCAAGGA 58.500 41.667 11.45 3.13 42.53 3.36
3858 4501 5.576563 TCCAGAAATACTTGTCCAAGGAA 57.423 39.130 11.45 0.16 42.53 3.36
3859 4502 6.139679 TCCAGAAATACTTGTCCAAGGAAT 57.860 37.500 11.45 2.40 42.53 3.01
3860 4503 5.945784 TCCAGAAATACTTGTCCAAGGAATG 59.054 40.000 11.45 2.20 42.53 2.67
3915 4558 7.496529 ACATCCATTTGTATCCATTTCTACG 57.503 36.000 0.00 0.00 0.00 3.51
3916 4559 7.279615 ACATCCATTTGTATCCATTTCTACGA 58.720 34.615 0.00 0.00 0.00 3.43
3917 4560 7.226720 ACATCCATTTGTATCCATTTCTACGAC 59.773 37.037 0.00 0.00 0.00 4.34
3918 4561 6.645306 TCCATTTGTATCCATTTCTACGACA 58.355 36.000 0.00 0.00 0.00 4.35
3919 4562 7.106890 TCCATTTGTATCCATTTCTACGACAA 58.893 34.615 0.00 0.00 0.00 3.18
3920 4563 7.279981 TCCATTTGTATCCATTTCTACGACAAG 59.720 37.037 0.00 0.00 0.00 3.16
3921 4564 7.065803 CCATTTGTATCCATTTCTACGACAAGT 59.934 37.037 0.00 0.00 0.00 3.16
3922 4565 9.093970 CATTTGTATCCATTTCTACGACAAGTA 57.906 33.333 0.00 0.00 0.00 2.24
3923 4566 9.832445 ATTTGTATCCATTTCTACGACAAGTAT 57.168 29.630 0.00 0.00 34.34 2.12
3924 4567 9.661563 TTTGTATCCATTTCTACGACAAGTATT 57.338 29.630 0.00 0.00 34.34 1.89
3925 4568 9.661563 TTGTATCCATTTCTACGACAAGTATTT 57.338 29.630 0.00 0.00 34.34 1.40
3926 4569 9.309516 TGTATCCATTTCTACGACAAGTATTTC 57.690 33.333 0.00 0.00 34.34 2.17
3927 4570 7.787725 ATCCATTTCTACGACAAGTATTTCC 57.212 36.000 0.00 0.00 34.34 3.13
3928 4571 5.808540 TCCATTTCTACGACAAGTATTTCCG 59.191 40.000 0.00 0.00 34.34 4.30
3929 4572 5.006358 CCATTTCTACGACAAGTATTTCCGG 59.994 44.000 0.00 0.00 34.34 5.14
3930 4573 5.389859 TTTCTACGACAAGTATTTCCGGA 57.610 39.130 0.00 0.00 34.34 5.14
3931 4574 4.361451 TCTACGACAAGTATTTCCGGAC 57.639 45.455 1.83 0.00 34.34 4.79
3932 4575 3.758023 TCTACGACAAGTATTTCCGGACA 59.242 43.478 1.83 0.00 34.34 4.02
3933 4576 2.955614 ACGACAAGTATTTCCGGACAG 58.044 47.619 1.83 0.00 0.00 3.51
3934 4577 2.559668 ACGACAAGTATTTCCGGACAGA 59.440 45.455 1.83 0.00 0.00 3.41
3935 4578 3.179830 CGACAAGTATTTCCGGACAGAG 58.820 50.000 1.83 0.00 0.00 3.35
3936 4579 3.522553 GACAAGTATTTCCGGACAGAGG 58.477 50.000 1.83 0.00 0.00 3.69
3937 4580 2.236395 ACAAGTATTTCCGGACAGAGGG 59.764 50.000 1.83 0.00 0.00 4.30
3938 4581 2.500098 CAAGTATTTCCGGACAGAGGGA 59.500 50.000 1.83 0.00 0.00 4.20
3939 4582 2.389715 AGTATTTCCGGACAGAGGGAG 58.610 52.381 1.83 0.00 33.01 4.30
3940 4583 2.108970 GTATTTCCGGACAGAGGGAGT 58.891 52.381 1.83 0.00 33.01 3.85
3941 4584 2.544844 ATTTCCGGACAGAGGGAGTA 57.455 50.000 1.83 0.00 33.01 2.59
4007 4651 4.911053 GACAGACTGTCGACGAGATTTAT 58.089 43.478 19.41 0.00 37.67 1.40
4096 4740 9.209297 GTTTAATGATTCTGTTGTTGTTTTTGC 57.791 29.630 0.00 0.00 0.00 3.68
4102 4746 2.079925 TGTTGTTGTTTTTGCTTGGGC 58.920 42.857 0.00 0.00 39.26 5.36
4406 5054 7.250569 CCATATGAAAGAACATTAGCGTGTTT 58.749 34.615 3.65 0.00 42.08 2.83
4423 5071 2.817258 TGTTTGCTGGTACTAACATGCC 59.183 45.455 0.00 0.00 31.77 4.40
4710 5359 2.844122 ATTCTTTCCCGCAAATACGC 57.156 45.000 0.00 0.00 0.00 4.42
4737 5386 2.810852 GCAAAGAGCTATGGATGTAGCC 59.189 50.000 2.54 0.00 46.48 3.93
5017 5679 6.582636 AGATTCACTCATTTTGCTCCGTATA 58.417 36.000 0.00 0.00 0.00 1.47
5109 5771 1.915489 TGGGCATATGAGAACAGTGGT 59.085 47.619 6.97 0.00 0.00 4.16
5164 5826 2.161855 CACTGCACTTTGGGCTTATGA 58.838 47.619 0.00 0.00 0.00 2.15
5169 5831 5.658190 ACTGCACTTTGGGCTTATGATAATT 59.342 36.000 0.00 0.00 0.00 1.40
5407 6069 3.050089 GGCAACCAAATCTGGGTCA 57.950 52.632 0.00 0.00 38.87 4.02
5508 6170 1.079197 CTGGAAATTTTGGGCGGGC 60.079 57.895 0.00 0.00 0.00 6.13
5583 6257 3.474600 CTCCTGTTCATCACCATCATCC 58.525 50.000 0.00 0.00 0.00 3.51
5584 6258 3.117745 TCCTGTTCATCACCATCATCCT 58.882 45.455 0.00 0.00 0.00 3.24
5585 6259 3.118149 TCCTGTTCATCACCATCATCCTG 60.118 47.826 0.00 0.00 0.00 3.86
5650 6324 8.560355 TTGCTCAGTAATAAGATTGCACTTTA 57.440 30.769 0.00 0.00 0.00 1.85
5755 6429 3.555956 GCTTCAAGAAGTTCAACGACTCA 59.444 43.478 11.14 0.00 40.45 3.41
5774 6448 4.164796 ACTCATTCATGGAGCAATACCAGA 59.835 41.667 0.00 0.00 40.89 3.86
5803 6477 3.305676 CGAGGCTGTGAAGAGAGAAGAAA 60.306 47.826 0.00 0.00 0.00 2.52
5808 6482 5.066505 GGCTGTGAAGAGAGAAGAAAACAAA 59.933 40.000 0.00 0.00 0.00 2.83
5926 6601 5.366768 GCTATGCTTGATATGTATAGGGGGA 59.633 44.000 0.00 0.00 32.98 4.81
5929 6604 6.718593 TGCTTGATATGTATAGGGGGAAAT 57.281 37.500 0.00 0.00 0.00 2.17
5943 6619 4.772100 AGGGGGAAATTATATGCGGAAATG 59.228 41.667 0.00 0.00 0.00 2.32
5964 6640 8.974060 AAATGTTCGGTCCATTTACTACATAT 57.026 30.769 6.20 0.00 39.94 1.78
5965 6641 7.962964 ATGTTCGGTCCATTTACTACATATG 57.037 36.000 0.00 0.00 0.00 1.78
6052 6734 1.401539 GCTTGATCGCCCTTGTTGTTC 60.402 52.381 0.00 0.00 0.00 3.18
6057 6739 1.961277 CGCCCTTGTTGTTCGAGCT 60.961 57.895 0.00 0.00 0.00 4.09
6104 6790 2.421314 CTGACACACAGCACCGGA 59.579 61.111 9.46 0.00 39.86 5.14
6105 6791 1.227527 CTGACACACAGCACCGGAA 60.228 57.895 9.46 0.00 39.86 4.30
6106 6792 1.498865 CTGACACACAGCACCGGAAC 61.499 60.000 9.46 0.00 39.86 3.62
6165 7101 6.908825 TGGTTTTCTGATACAATACAGCAAC 58.091 36.000 0.00 0.00 34.57 4.17
6192 7128 0.879765 CCCTGCTTCTGACTTTGCTG 59.120 55.000 0.00 0.00 0.00 4.41
6227 7163 6.005823 CACTCCCTGAATTGAATGGCATATA 58.994 40.000 0.00 0.00 0.00 0.86
6250 7186 1.432251 GCTGCTAACGCTCGTCCTA 59.568 57.895 0.00 0.00 36.97 2.94
6252 7188 1.926827 GCTGCTAACGCTCGTCCTATC 60.927 57.143 0.00 0.00 36.97 2.08
6257 7193 3.802685 GCTAACGCTCGTCCTATCAATTT 59.197 43.478 0.00 0.00 0.00 1.82
6258 7194 4.980434 GCTAACGCTCGTCCTATCAATTTA 59.020 41.667 0.00 0.00 0.00 1.40
6259 7195 5.107951 GCTAACGCTCGTCCTATCAATTTAC 60.108 44.000 0.00 0.00 0.00 2.01
6441 7377 1.343478 TGGGAAGGAAAACCAAGGCAA 60.343 47.619 0.00 0.00 0.00 4.52
6523 7459 2.030371 TGCTCATTCACCAACTTGCAA 58.970 42.857 0.00 0.00 0.00 4.08
6560 7496 3.128465 ACGAGAAATCGTACCGACTTC 57.872 47.619 0.74 0.06 45.19 3.01
6569 7505 1.005975 CGTACCGACTTCGTAGTACCG 60.006 57.143 10.61 0.00 35.25 4.02
6591 7527 3.503800 ACCCAGGGTAAGTCAAAGAAC 57.496 47.619 10.48 0.00 32.11 3.01
6598 7534 7.148069 CCCAGGGTAAGTCAAAGAACAATATTC 60.148 40.741 0.00 0.00 0.00 1.75
6610 7546 9.118300 CAAAGAACAATATTCCTGCTTCTAGAT 57.882 33.333 0.00 0.00 0.00 1.98
6639 7575 1.133915 GTTCCAGTCCCCAGTTTGACA 60.134 52.381 0.00 0.00 33.89 3.58
6640 7576 1.217916 TCCAGTCCCCAGTTTGACAA 58.782 50.000 0.00 0.00 33.89 3.18
6641 7577 1.566703 TCCAGTCCCCAGTTTGACAAA 59.433 47.619 0.00 0.00 33.89 2.83
6818 7754 9.632638 ACTGCAACCATGATTCTTTATATAACT 57.367 29.630 0.00 0.00 0.00 2.24
6820 7756 8.773645 TGCAACCATGATTCTTTATATAACTCG 58.226 33.333 0.00 0.00 0.00 4.18
6821 7757 7.746475 GCAACCATGATTCTTTATATAACTCGC 59.254 37.037 0.00 0.00 0.00 5.03
6822 7758 7.582435 ACCATGATTCTTTATATAACTCGCG 57.418 36.000 0.00 0.00 0.00 5.87
6823 7759 6.090898 ACCATGATTCTTTATATAACTCGCGC 59.909 38.462 0.00 0.00 0.00 6.86
6824 7760 6.090763 CCATGATTCTTTATATAACTCGCGCA 59.909 38.462 8.75 0.00 0.00 6.09
6825 7761 7.360017 CCATGATTCTTTATATAACTCGCGCAA 60.360 37.037 8.75 0.00 0.00 4.85
6826 7762 7.105494 TGATTCTTTATATAACTCGCGCAAG 57.895 36.000 8.75 0.00 43.44 4.01
6901 7999 3.320673 AGCGAAACCAACTCCTTAGAG 57.679 47.619 0.00 0.00 46.36 2.43
6909 8007 7.982354 CGAAACCAACTCCTTAGAGATAAATCT 59.018 37.037 0.00 0.00 43.39 2.40
6910 8008 9.103861 GAAACCAACTCCTTAGAGATAAATCTG 57.896 37.037 0.00 0.00 43.39 2.90
6911 8009 7.741554 ACCAACTCCTTAGAGATAAATCTGT 57.258 36.000 0.00 0.00 43.39 3.41
6912 8010 7.560368 ACCAACTCCTTAGAGATAAATCTGTG 58.440 38.462 0.00 0.00 43.39 3.66
6913 8011 6.481644 CCAACTCCTTAGAGATAAATCTGTGC 59.518 42.308 0.00 0.00 43.39 4.57
6914 8012 5.837437 ACTCCTTAGAGATAAATCTGTGCG 58.163 41.667 0.00 0.00 43.39 5.34
6915 8013 5.594725 ACTCCTTAGAGATAAATCTGTGCGA 59.405 40.000 0.00 0.00 43.39 5.10
6916 8014 6.078202 TCCTTAGAGATAAATCTGTGCGAG 57.922 41.667 0.00 0.00 37.25 5.03
6917 8015 5.828328 TCCTTAGAGATAAATCTGTGCGAGA 59.172 40.000 0.00 0.00 37.25 4.04
6918 8016 6.491745 TCCTTAGAGATAAATCTGTGCGAGAT 59.508 38.462 0.00 0.00 43.91 2.75
6919 8017 6.585702 CCTTAGAGATAAATCTGTGCGAGATG 59.414 42.308 0.00 0.00 40.89 2.90
6920 8018 4.305769 AGAGATAAATCTGTGCGAGATGC 58.694 43.478 0.00 0.00 40.89 3.91
6921 8019 3.055591 AGATAAATCTGTGCGAGATGCG 58.944 45.455 0.00 0.00 40.89 4.73
6922 8020 4.104346 AGATAAATCTGTGCGAGATGCGG 61.104 47.826 0.00 0.00 40.89 5.69
6923 8021 6.293745 AGATAAATCTGTGCGAGATGCGGA 62.294 45.833 0.00 0.00 40.89 5.54
6924 8022 7.689619 AGATAAATCTGTGCGAGATGCGGAA 62.690 44.000 0.00 0.00 43.67 4.30
6940 8038 1.706443 GGAAACGTCTTACCTCGGTG 58.294 55.000 0.00 0.00 0.00 4.94
6941 8039 1.066136 GAAACGTCTTACCTCGGTGC 58.934 55.000 0.00 0.00 0.00 5.01
6942 8040 0.665369 AAACGTCTTACCTCGGTGCG 60.665 55.000 0.00 1.43 0.00 5.34
6943 8041 1.518056 AACGTCTTACCTCGGTGCGA 61.518 55.000 0.00 0.00 0.00 5.10
6954 8052 4.309950 GGTGCGAGGGGACGTGTT 62.310 66.667 0.00 0.00 34.95 3.32
6955 8053 2.280592 GTGCGAGGGGACGTGTTT 60.281 61.111 0.00 0.00 35.59 2.83
6956 8054 2.029964 TGCGAGGGGACGTGTTTC 59.970 61.111 0.00 0.00 35.59 2.78
6957 8055 2.029964 GCGAGGGGACGTGTTTCA 59.970 61.111 0.00 0.00 35.59 2.69
6958 8056 1.375523 GCGAGGGGACGTGTTTCAT 60.376 57.895 0.00 0.00 35.59 2.57
6959 8057 1.635663 GCGAGGGGACGTGTTTCATG 61.636 60.000 0.00 0.00 35.59 3.07
6960 8058 0.320421 CGAGGGGACGTGTTTCATGT 60.320 55.000 0.00 0.00 36.19 3.21
6961 8059 1.876416 CGAGGGGACGTGTTTCATGTT 60.876 52.381 0.00 0.00 33.38 2.71
6962 8060 2.610976 CGAGGGGACGTGTTTCATGTTA 60.611 50.000 0.00 0.00 33.38 2.41
6963 8061 3.606687 GAGGGGACGTGTTTCATGTTAT 58.393 45.455 0.00 0.00 33.38 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.338622 CCTCCATTAAGTTTTAATCGGTTCTAT 57.661 33.333 0.00 0.00 0.00 1.98
12 13 6.372381 GCCGAGTAAACCTCCATTAAGTTTTA 59.628 38.462 0.00 0.00 36.82 1.52
47 48 6.522054 TCTAACTGATCCCCTAAAAATAGCG 58.478 40.000 0.00 0.00 0.00 4.26
57 58 4.909284 AGGGTATTTCTAACTGATCCCCT 58.091 43.478 0.00 0.00 35.12 4.79
58 59 6.557633 TCTTAGGGTATTTCTAACTGATCCCC 59.442 42.308 0.00 0.00 34.74 4.81
65 66 5.663556 AGCTGCTCTTAGGGTATTTCTAACT 59.336 40.000 0.00 0.00 0.00 2.24
75 76 0.547712 TCCCAAGCTGCTCTTAGGGT 60.548 55.000 21.25 0.00 40.74 4.34
88 89 4.082245 GGTGTTCCATTATGTTGTCCCAAG 60.082 45.833 0.00 0.00 0.00 3.61
89 90 3.829601 GGTGTTCCATTATGTTGTCCCAA 59.170 43.478 0.00 0.00 0.00 4.12
90 91 3.426615 GGTGTTCCATTATGTTGTCCCA 58.573 45.455 0.00 0.00 0.00 4.37
91 92 2.758423 GGGTGTTCCATTATGTTGTCCC 59.242 50.000 0.00 0.00 35.00 4.46
92 93 2.422127 CGGGTGTTCCATTATGTTGTCC 59.578 50.000 0.00 0.00 34.36 4.02
93 94 2.159435 GCGGGTGTTCCATTATGTTGTC 60.159 50.000 0.00 0.00 34.36 3.18
94 95 1.816224 GCGGGTGTTCCATTATGTTGT 59.184 47.619 0.00 0.00 34.36 3.32
95 96 1.815613 TGCGGGTGTTCCATTATGTTG 59.184 47.619 0.00 0.00 34.36 3.33
96 97 2.208132 TGCGGGTGTTCCATTATGTT 57.792 45.000 0.00 0.00 34.36 2.71
97 98 2.023673 CATGCGGGTGTTCCATTATGT 58.976 47.619 0.00 0.00 34.36 2.29
98 99 2.296792 TCATGCGGGTGTTCCATTATG 58.703 47.619 0.00 0.00 34.36 1.90
99 100 2.727123 TCATGCGGGTGTTCCATTAT 57.273 45.000 0.00 0.00 34.36 1.28
100 101 2.498644 TTCATGCGGGTGTTCCATTA 57.501 45.000 0.00 0.00 34.36 1.90
101 102 1.477700 CATTCATGCGGGTGTTCCATT 59.522 47.619 0.00 0.00 34.36 3.16
102 103 1.105457 CATTCATGCGGGTGTTCCAT 58.895 50.000 0.00 0.00 34.36 3.41
103 104 0.037447 TCATTCATGCGGGTGTTCCA 59.963 50.000 0.00 0.00 34.36 3.53
104 105 1.133025 CTTCATTCATGCGGGTGTTCC 59.867 52.381 0.00 0.00 0.00 3.62
105 106 1.812571 ACTTCATTCATGCGGGTGTTC 59.187 47.619 0.00 0.00 0.00 3.18
106 107 1.541147 CACTTCATTCATGCGGGTGTT 59.459 47.619 0.00 0.00 0.00 3.32
107 108 1.167851 CACTTCATTCATGCGGGTGT 58.832 50.000 0.00 0.00 0.00 4.16
108 109 1.452110 TCACTTCATTCATGCGGGTG 58.548 50.000 0.00 0.00 0.00 4.61
109 110 1.812571 GTTCACTTCATTCATGCGGGT 59.187 47.619 0.00 0.00 0.00 5.28
110 111 1.811965 TGTTCACTTCATTCATGCGGG 59.188 47.619 0.00 0.00 0.00 6.13
111 112 2.226200 TGTGTTCACTTCATTCATGCGG 59.774 45.455 4.59 0.00 0.00 5.69
112 113 3.541071 TGTGTTCACTTCATTCATGCG 57.459 42.857 4.59 0.00 0.00 4.73
113 114 4.913924 GTCTTGTGTTCACTTCATTCATGC 59.086 41.667 4.59 0.00 0.00 4.06
114 115 6.063640 TGTCTTGTGTTCACTTCATTCATG 57.936 37.500 4.59 0.00 0.00 3.07
115 116 6.698008 TTGTCTTGTGTTCACTTCATTCAT 57.302 33.333 4.59 0.00 0.00 2.57
116 117 6.404623 CCTTTGTCTTGTGTTCACTTCATTCA 60.405 38.462 4.59 0.00 0.00 2.57
117 118 5.973565 CCTTTGTCTTGTGTTCACTTCATTC 59.026 40.000 4.59 0.00 0.00 2.67
118 119 5.163519 CCCTTTGTCTTGTGTTCACTTCATT 60.164 40.000 4.59 0.00 0.00 2.57
119 120 4.339247 CCCTTTGTCTTGTGTTCACTTCAT 59.661 41.667 4.59 0.00 0.00 2.57
120 121 3.694072 CCCTTTGTCTTGTGTTCACTTCA 59.306 43.478 4.59 0.00 0.00 3.02
121 122 3.066760 CCCCTTTGTCTTGTGTTCACTTC 59.933 47.826 4.59 0.00 0.00 3.01
122 123 3.023832 CCCCTTTGTCTTGTGTTCACTT 58.976 45.455 4.59 0.00 0.00 3.16
123 124 2.241176 TCCCCTTTGTCTTGTGTTCACT 59.759 45.455 4.59 0.00 0.00 3.41
124 125 2.357952 GTCCCCTTTGTCTTGTGTTCAC 59.642 50.000 0.00 0.00 0.00 3.18
125 126 2.025793 TGTCCCCTTTGTCTTGTGTTCA 60.026 45.455 0.00 0.00 0.00 3.18
126 127 2.618709 CTGTCCCCTTTGTCTTGTGTTC 59.381 50.000 0.00 0.00 0.00 3.18
127 128 2.025321 ACTGTCCCCTTTGTCTTGTGTT 60.025 45.455 0.00 0.00 0.00 3.32
128 129 1.564348 ACTGTCCCCTTTGTCTTGTGT 59.436 47.619 0.00 0.00 0.00 3.72
313 340 3.199442 TCAGAACCAACTAGGGATGGA 57.801 47.619 15.83 0.00 43.89 3.41
317 344 4.079253 GCAAATTCAGAACCAACTAGGGA 58.921 43.478 0.00 0.00 43.89 4.20
318 345 3.826157 TGCAAATTCAGAACCAACTAGGG 59.174 43.478 0.00 0.00 43.89 3.53
319 346 4.520492 ACTGCAAATTCAGAACCAACTAGG 59.480 41.667 1.40 0.00 39.34 3.02
320 347 5.455392 CACTGCAAATTCAGAACCAACTAG 58.545 41.667 1.40 0.00 37.51 2.57
321 348 4.278170 CCACTGCAAATTCAGAACCAACTA 59.722 41.667 1.40 0.00 37.51 2.24
322 349 3.068590 CCACTGCAAATTCAGAACCAACT 59.931 43.478 1.40 0.00 37.51 3.16
323 350 3.068024 TCCACTGCAAATTCAGAACCAAC 59.932 43.478 1.40 0.00 37.51 3.77
324 351 3.295093 TCCACTGCAAATTCAGAACCAA 58.705 40.909 1.40 0.00 37.51 3.67
325 352 2.942804 TCCACTGCAAATTCAGAACCA 58.057 42.857 1.40 0.00 37.51 3.67
326 353 3.256631 ACATCCACTGCAAATTCAGAACC 59.743 43.478 1.40 0.00 37.51 3.62
327 354 4.232221 CACATCCACTGCAAATTCAGAAC 58.768 43.478 1.40 0.00 37.51 3.01
328 355 3.256383 CCACATCCACTGCAAATTCAGAA 59.744 43.478 1.40 0.00 37.51 3.02
329 356 2.821378 CCACATCCACTGCAAATTCAGA 59.179 45.455 1.40 0.00 37.51 3.27
330 357 2.821378 TCCACATCCACTGCAAATTCAG 59.179 45.455 0.00 0.00 39.86 3.02
331 358 2.874014 TCCACATCCACTGCAAATTCA 58.126 42.857 0.00 0.00 0.00 2.57
332 359 4.398988 TGTATCCACATCCACTGCAAATTC 59.601 41.667 0.00 0.00 0.00 2.17
333 360 4.343231 TGTATCCACATCCACTGCAAATT 58.657 39.130 0.00 0.00 0.00 1.82
334 361 3.966979 TGTATCCACATCCACTGCAAAT 58.033 40.909 0.00 0.00 0.00 2.32
335 362 3.431673 TGTATCCACATCCACTGCAAA 57.568 42.857 0.00 0.00 0.00 3.68
336 363 3.431673 TTGTATCCACATCCACTGCAA 57.568 42.857 0.00 0.00 33.76 4.08
337 364 3.008923 TCTTTGTATCCACATCCACTGCA 59.991 43.478 0.00 0.00 33.76 4.41
338 365 3.609853 TCTTTGTATCCACATCCACTGC 58.390 45.455 0.00 0.00 33.76 4.40
339 366 5.882000 TCATTCTTTGTATCCACATCCACTG 59.118 40.000 0.00 0.00 33.76 3.66
340 367 6.065976 TCATTCTTTGTATCCACATCCACT 57.934 37.500 0.00 0.00 33.76 4.00
341 368 6.757897 TTCATTCTTTGTATCCACATCCAC 57.242 37.500 0.00 0.00 33.76 4.02
342 369 7.232330 TGTTTTCATTCTTTGTATCCACATCCA 59.768 33.333 0.00 0.00 33.76 3.41
343 370 7.601856 TGTTTTCATTCTTTGTATCCACATCC 58.398 34.615 0.00 0.00 33.76 3.51
344 371 9.474920 TTTGTTTTCATTCTTTGTATCCACATC 57.525 29.630 0.00 0.00 33.76 3.06
345 372 9.260002 GTTTGTTTTCATTCTTTGTATCCACAT 57.740 29.630 0.00 0.00 33.76 3.21
346 373 7.433719 CGTTTGTTTTCATTCTTTGTATCCACA 59.566 33.333 0.00 0.00 0.00 4.17
347 374 7.096230 CCGTTTGTTTTCATTCTTTGTATCCAC 60.096 37.037 0.00 0.00 0.00 4.02
348 375 6.920758 CCGTTTGTTTTCATTCTTTGTATCCA 59.079 34.615 0.00 0.00 0.00 3.41
349 376 6.364976 CCCGTTTGTTTTCATTCTTTGTATCC 59.635 38.462 0.00 0.00 0.00 2.59
350 377 6.364976 CCCCGTTTGTTTTCATTCTTTGTATC 59.635 38.462 0.00 0.00 0.00 2.24
351 378 6.220201 CCCCGTTTGTTTTCATTCTTTGTAT 58.780 36.000 0.00 0.00 0.00 2.29
352 379 5.452077 CCCCCGTTTGTTTTCATTCTTTGTA 60.452 40.000 0.00 0.00 0.00 2.41
353 380 4.438148 CCCCGTTTGTTTTCATTCTTTGT 58.562 39.130 0.00 0.00 0.00 2.83
354 381 3.807071 CCCCCGTTTGTTTTCATTCTTTG 59.193 43.478 0.00 0.00 0.00 2.77
355 382 3.707102 TCCCCCGTTTGTTTTCATTCTTT 59.293 39.130 0.00 0.00 0.00 2.52
356 383 3.301274 TCCCCCGTTTGTTTTCATTCTT 58.699 40.909 0.00 0.00 0.00 2.52
357 384 2.952116 TCCCCCGTTTGTTTTCATTCT 58.048 42.857 0.00 0.00 0.00 2.40
358 385 3.737032 TTCCCCCGTTTGTTTTCATTC 57.263 42.857 0.00 0.00 0.00 2.67
359 386 4.698201 AATTCCCCCGTTTGTTTTCATT 57.302 36.364 0.00 0.00 0.00 2.57
360 387 4.141597 ACAAATTCCCCCGTTTGTTTTCAT 60.142 37.500 0.00 0.00 43.80 2.57
361 388 3.197983 ACAAATTCCCCCGTTTGTTTTCA 59.802 39.130 0.00 0.00 43.80 2.69
362 389 3.558006 CACAAATTCCCCCGTTTGTTTTC 59.442 43.478 1.12 0.00 43.80 2.29
363 390 3.055021 ACACAAATTCCCCCGTTTGTTTT 60.055 39.130 1.12 0.00 43.80 2.43
364 391 2.502130 ACACAAATTCCCCCGTTTGTTT 59.498 40.909 1.12 0.00 43.80 2.83
365 392 2.101750 GACACAAATTCCCCCGTTTGTT 59.898 45.455 1.12 0.00 43.80 2.83
366 393 1.684450 GACACAAATTCCCCCGTTTGT 59.316 47.619 0.00 0.00 46.29 2.83
367 394 1.000394 GGACACAAATTCCCCCGTTTG 60.000 52.381 0.00 0.00 40.29 2.93
368 395 1.334160 GGACACAAATTCCCCCGTTT 58.666 50.000 0.00 0.00 0.00 3.60
369 396 0.541063 GGGACACAAATTCCCCCGTT 60.541 55.000 0.00 0.00 46.57 4.44
370 397 1.076014 GGGACACAAATTCCCCCGT 59.924 57.895 0.00 0.00 46.57 5.28
371 398 4.012138 GGGACACAAATTCCCCCG 57.988 61.111 0.00 0.00 46.57 5.73
375 402 3.763057 ACCAACTAGGGACACAAATTCC 58.237 45.455 0.00 0.00 43.89 3.01
376 403 5.048713 CAGAACCAACTAGGGACACAAATTC 60.049 44.000 0.00 0.00 43.89 2.17
377 404 4.827284 CAGAACCAACTAGGGACACAAATT 59.173 41.667 0.00 0.00 43.89 1.82
378 405 4.104102 TCAGAACCAACTAGGGACACAAAT 59.896 41.667 0.00 0.00 43.89 2.32
379 406 3.456644 TCAGAACCAACTAGGGACACAAA 59.543 43.478 0.00 0.00 43.89 2.83
380 407 3.042682 TCAGAACCAACTAGGGACACAA 58.957 45.455 0.00 0.00 43.89 3.33
381 408 2.684943 TCAGAACCAACTAGGGACACA 58.315 47.619 0.00 0.00 43.89 3.72
382 409 3.764237 TTCAGAACCAACTAGGGACAC 57.236 47.619 0.00 0.00 43.89 3.67
383 410 4.993705 AATTCAGAACCAACTAGGGACA 57.006 40.909 0.00 0.00 43.89 4.02
384 411 4.082733 GCAAATTCAGAACCAACTAGGGAC 60.083 45.833 0.00 0.00 43.89 4.46
428 455 4.141597 ACAAATTCCCCCGTTTGTTTTCAT 60.142 37.500 0.00 0.00 43.80 2.57
429 456 3.197983 ACAAATTCCCCCGTTTGTTTTCA 59.802 39.130 0.00 0.00 43.80 2.69
444 888 5.458779 GCAACAACACTAGGAACACAAATTC 59.541 40.000 0.00 0.00 0.00 2.17
472 916 5.186992 TGAGCATTTGTCTAGGTGCTAGTAA 59.813 40.000 0.00 0.00 46.98 2.24
473 917 4.709886 TGAGCATTTGTCTAGGTGCTAGTA 59.290 41.667 0.00 0.00 46.98 1.82
475 919 4.128925 TGAGCATTTGTCTAGGTGCTAG 57.871 45.455 0.00 0.00 46.98 3.42
478 922 2.813754 TGTTGAGCATTTGTCTAGGTGC 59.186 45.455 0.00 0.00 37.84 5.01
479 923 4.067896 AGTGTTGAGCATTTGTCTAGGTG 58.932 43.478 0.00 0.00 0.00 4.00
481 925 4.631813 GGTAGTGTTGAGCATTTGTCTAGG 59.368 45.833 0.00 0.00 0.00 3.02
482 926 4.631813 GGGTAGTGTTGAGCATTTGTCTAG 59.368 45.833 0.00 0.00 0.00 2.43
484 928 3.073062 AGGGTAGTGTTGAGCATTTGTCT 59.927 43.478 0.00 0.00 0.00 3.41
485 929 3.189287 CAGGGTAGTGTTGAGCATTTGTC 59.811 47.826 0.00 0.00 0.00 3.18
486 930 3.149196 CAGGGTAGTGTTGAGCATTTGT 58.851 45.455 0.00 0.00 0.00 2.83
487 931 3.149196 ACAGGGTAGTGTTGAGCATTTG 58.851 45.455 0.00 0.00 0.00 2.32
488 932 3.508845 ACAGGGTAGTGTTGAGCATTT 57.491 42.857 0.00 0.00 0.00 2.32
489 933 3.508845 AACAGGGTAGTGTTGAGCATT 57.491 42.857 0.00 0.00 39.25 3.56
494 975 3.709653 AGACTGAAACAGGGTAGTGTTGA 59.290 43.478 0.00 0.00 39.82 3.18
518 999 9.382275 AGTAAATTGTTTCAGCTTCACAAAAAT 57.618 25.926 6.28 0.56 34.19 1.82
573 1054 0.603707 TGGCTCTGCTTTGTTCTCCG 60.604 55.000 0.00 0.00 0.00 4.63
618 1099 2.709934 CCTTGTCTCCATCCATCCATCT 59.290 50.000 0.00 0.00 0.00 2.90
626 1107 4.769345 ATTCTCTTCCTTGTCTCCATCC 57.231 45.455 0.00 0.00 0.00 3.51
706 1187 3.279504 AAGCTCCTCTTGCCTGCCC 62.280 63.158 0.00 0.00 32.79 5.36
788 1269 0.903236 AAAGGACTAGGAACTCGGGC 59.097 55.000 0.00 0.00 41.75 6.13
844 1326 0.597568 CTCAATTTTCCTGCGCACCA 59.402 50.000 5.66 0.00 0.00 4.17
853 1335 0.248621 CGGCATCCGCTCAATTTTCC 60.249 55.000 0.00 0.00 41.17 3.13
953 1435 1.065491 TGTAGTGTAATGGCAGGGCAG 60.065 52.381 1.13 0.00 0.00 4.85
954 1436 0.988063 TGTAGTGTAATGGCAGGGCA 59.012 50.000 0.00 0.00 0.00 5.36
1090 1573 0.399833 GCCTTCCTCCCCATCATCTC 59.600 60.000 0.00 0.00 0.00 2.75
1282 1765 4.399618 TGGTGAAGAGAAGAAGAGGATACG 59.600 45.833 0.00 0.00 46.39 3.06
1283 1766 5.923733 TGGTGAAGAGAAGAAGAGGATAC 57.076 43.478 0.00 0.00 0.00 2.24
1391 1886 3.209410 GTTGGGATCATCGAGCAGAAAT 58.791 45.455 0.00 0.00 0.00 2.17
1394 1889 0.103026 CGTTGGGATCATCGAGCAGA 59.897 55.000 0.00 0.00 38.07 4.26
1490 1985 0.828022 TGGGCGGACGAGAATATGTT 59.172 50.000 0.00 0.00 0.00 2.71
1491 1986 0.828022 TTGGGCGGACGAGAATATGT 59.172 50.000 0.00 0.00 0.00 2.29
1746 2354 1.537638 AGTCAAACACACACACGCAAA 59.462 42.857 0.00 0.00 0.00 3.68
1748 2356 0.445829 CAGTCAAACACACACACGCA 59.554 50.000 0.00 0.00 0.00 5.24
1749 2357 0.724549 TCAGTCAAACACACACACGC 59.275 50.000 0.00 0.00 0.00 5.34
1750 2358 1.729517 TGTCAGTCAAACACACACACG 59.270 47.619 0.00 0.00 0.00 4.49
1790 2411 1.618837 GGAGTCACTGTAAGCACCTGA 59.381 52.381 0.00 0.00 37.60 3.86
1942 2563 1.613630 TGTGAGGAGGGAGGAAGGC 60.614 63.158 0.00 0.00 0.00 4.35
1979 2600 6.737720 TCTGGATCACTGCAATAAGTAGAT 57.262 37.500 0.00 0.00 33.69 1.98
2108 2729 6.963117 TCTTAAGTAAGATTCTGGGGGAAA 57.037 37.500 1.63 0.00 37.40 3.13
2384 3013 6.611613 TTTCTGATGAGTATGGAAGACAGT 57.388 37.500 0.00 0.00 0.00 3.55
2503 3132 9.230122 AGTTAGTAGAGGTTTTAGTGTAGAGAC 57.770 37.037 0.00 0.00 0.00 3.36
2609 3238 7.164230 AGGTGAAACAAATTACACTGTCAAA 57.836 32.000 0.00 0.00 39.98 2.69
2669 3298 9.613428 TTTTATATAAGCAGCATGACTACAACT 57.387 29.630 0.00 0.00 39.69 3.16
3080 3712 6.539649 TTATCTTTCAGTGTAACACAGCAC 57.460 37.500 0.00 0.00 41.43 4.40
3120 3753 2.355444 TGTGGTCAGCGCAATTGATATG 59.645 45.455 11.47 3.79 0.00 1.78
3145 3778 5.825593 ACCTAGAACATGTTGAGAAAGGA 57.174 39.130 17.58 0.00 0.00 3.36
3258 3891 1.310904 TTTCAAAGTACCCACCACGC 58.689 50.000 0.00 0.00 0.00 5.34
3446 4088 4.205587 CAAGGCTAGGAAATTCTGATGCT 58.794 43.478 0.00 0.00 0.00 3.79
3595 4238 1.609208 ATCCACAAAGTGCACTCCAC 58.391 50.000 21.95 0.00 45.01 4.02
3681 4324 3.682372 GCTAGCAGCTGTAAATGAACC 57.318 47.619 16.64 0.00 38.45 3.62
3805 4448 5.570320 AGTATGTGTTACCATCCAAGCTTT 58.430 37.500 0.00 0.00 0.00 3.51
3809 4452 4.164221 AGGGAGTATGTGTTACCATCCAAG 59.836 45.833 0.00 0.00 30.27 3.61
3828 4471 4.111577 ACAAGTATTTCTGGATGGAGGGA 58.888 43.478 0.00 0.00 0.00 4.20
3829 4472 4.455606 GACAAGTATTTCTGGATGGAGGG 58.544 47.826 0.00 0.00 0.00 4.30
3830 4473 4.080356 TGGACAAGTATTTCTGGATGGAGG 60.080 45.833 0.00 0.00 0.00 4.30
3831 4474 5.102953 TGGACAAGTATTTCTGGATGGAG 57.897 43.478 0.00 0.00 0.00 3.86
3832 4475 5.500234 CTTGGACAAGTATTTCTGGATGGA 58.500 41.667 3.93 0.00 33.87 3.41
3833 4476 4.641989 CCTTGGACAAGTATTTCTGGATGG 59.358 45.833 10.81 0.00 36.72 3.51
3834 4477 5.500234 TCCTTGGACAAGTATTTCTGGATG 58.500 41.667 10.81 0.00 36.72 3.51
3835 4478 5.779241 TCCTTGGACAAGTATTTCTGGAT 57.221 39.130 10.81 0.00 36.72 3.41
3836 4479 5.576563 TTCCTTGGACAAGTATTTCTGGA 57.423 39.130 10.81 0.00 36.72 3.86
3837 4480 6.199937 CATTCCTTGGACAAGTATTTCTGG 57.800 41.667 10.81 0.00 36.72 3.86
3901 4544 8.762426 GGAAATACTTGTCGTAGAAATGGATAC 58.238 37.037 0.00 0.00 39.69 2.24
3902 4545 7.650504 CGGAAATACTTGTCGTAGAAATGGATA 59.349 37.037 0.00 0.00 39.69 2.59
3903 4546 6.479001 CGGAAATACTTGTCGTAGAAATGGAT 59.521 38.462 0.00 0.00 39.69 3.41
3904 4547 5.808540 CGGAAATACTTGTCGTAGAAATGGA 59.191 40.000 0.00 0.00 39.69 3.41
3905 4548 5.006358 CCGGAAATACTTGTCGTAGAAATGG 59.994 44.000 0.00 0.00 39.69 3.16
3906 4549 5.808540 TCCGGAAATACTTGTCGTAGAAATG 59.191 40.000 0.00 0.00 39.69 2.32
3907 4550 5.809051 GTCCGGAAATACTTGTCGTAGAAAT 59.191 40.000 5.23 0.00 39.69 2.17
3908 4551 5.163513 GTCCGGAAATACTTGTCGTAGAAA 58.836 41.667 5.23 0.00 39.69 2.52
3909 4552 4.218200 TGTCCGGAAATACTTGTCGTAGAA 59.782 41.667 5.23 0.00 39.69 2.10
3910 4553 3.758023 TGTCCGGAAATACTTGTCGTAGA 59.242 43.478 5.23 0.00 0.00 2.59
3911 4554 4.100707 TGTCCGGAAATACTTGTCGTAG 57.899 45.455 5.23 0.00 0.00 3.51
3912 4555 3.758023 TCTGTCCGGAAATACTTGTCGTA 59.242 43.478 5.23 0.00 0.00 3.43
3913 4556 2.559668 TCTGTCCGGAAATACTTGTCGT 59.440 45.455 5.23 0.00 0.00 4.34
3914 4557 3.179830 CTCTGTCCGGAAATACTTGTCG 58.820 50.000 5.23 0.00 0.00 4.35
3915 4558 3.522553 CCTCTGTCCGGAAATACTTGTC 58.477 50.000 5.23 0.00 0.00 3.18
3916 4559 2.236395 CCCTCTGTCCGGAAATACTTGT 59.764 50.000 5.23 0.00 0.00 3.16
3917 4560 2.500098 TCCCTCTGTCCGGAAATACTTG 59.500 50.000 5.23 0.00 0.00 3.16
3918 4561 2.766828 CTCCCTCTGTCCGGAAATACTT 59.233 50.000 5.23 0.00 0.00 2.24
3919 4562 2.292323 ACTCCCTCTGTCCGGAAATACT 60.292 50.000 5.23 0.00 0.00 2.12
3920 4563 2.108970 ACTCCCTCTGTCCGGAAATAC 58.891 52.381 5.23 0.00 0.00 1.89
3921 4564 2.544844 ACTCCCTCTGTCCGGAAATA 57.455 50.000 5.23 0.00 0.00 1.40
3922 4565 2.108970 GTACTCCCTCTGTCCGGAAAT 58.891 52.381 5.23 0.00 0.00 2.17
3923 4566 1.076677 AGTACTCCCTCTGTCCGGAAA 59.923 52.381 5.23 0.00 0.00 3.13
3924 4567 0.702902 AGTACTCCCTCTGTCCGGAA 59.297 55.000 5.23 0.00 0.00 4.30
3925 4568 0.702902 AAGTACTCCCTCTGTCCGGA 59.297 55.000 0.00 0.00 0.00 5.14
3926 4569 1.477295 GAAAGTACTCCCTCTGTCCGG 59.523 57.143 0.00 0.00 0.00 5.14
3927 4570 2.448453 AGAAAGTACTCCCTCTGTCCG 58.552 52.381 0.00 0.00 0.00 4.79
3928 4571 5.997384 TTAAGAAAGTACTCCCTCTGTCC 57.003 43.478 0.00 0.00 0.00 4.02
3929 4572 7.980662 GGTATTTAAGAAAGTACTCCCTCTGTC 59.019 40.741 0.00 0.00 0.00 3.51
3930 4573 7.092979 GGGTATTTAAGAAAGTACTCCCTCTGT 60.093 40.741 0.00 0.00 0.00 3.41
3931 4574 7.093024 TGGGTATTTAAGAAAGTACTCCCTCTG 60.093 40.741 0.00 0.00 33.15 3.35
3932 4575 6.964086 TGGGTATTTAAGAAAGTACTCCCTCT 59.036 38.462 0.00 0.00 33.15 3.69
3933 4576 7.191593 TGGGTATTTAAGAAAGTACTCCCTC 57.808 40.000 0.00 0.00 33.15 4.30
3934 4577 7.766736 ATGGGTATTTAAGAAAGTACTCCCT 57.233 36.000 0.00 0.00 33.15 4.20
4007 4651 0.376852 GCGCGATTGATGCAACCTTA 59.623 50.000 12.10 0.00 0.00 2.69
4116 4760 2.725221 AGTTCATGGATTGCCTCCTC 57.275 50.000 4.25 0.00 45.21 3.71
4153 4797 1.878088 GGGAAAACGAGGTTCTGGTTC 59.122 52.381 0.00 0.00 31.57 3.62
4156 4800 1.202770 ACAGGGAAAACGAGGTTCTGG 60.203 52.381 0.00 0.00 0.00 3.86
4406 5054 1.905894 TGAGGCATGTTAGTACCAGCA 59.094 47.619 0.00 0.00 0.00 4.41
4423 5071 1.493772 TACTGCAACGTCGGTTTGAG 58.506 50.000 0.00 0.00 32.98 3.02
4737 5386 3.237290 GCTTTGCCAGCGCTTTTG 58.763 55.556 7.50 0.00 39.29 2.44
4758 5407 4.020218 AGCTTGAGGCAGTAGTAAACATCA 60.020 41.667 0.00 0.00 44.79 3.07
4901 5551 2.802719 GGAGGGAGTAGCTAGGATCTG 58.197 57.143 0.00 0.00 0.00 2.90
5059 5721 2.180276 GCTTCACTTCTACTCCCTCCA 58.820 52.381 0.00 0.00 0.00 3.86
5109 5771 5.178061 GTGTATCACAACACTGATGATGGA 58.822 41.667 0.01 0.00 45.12 3.41
5169 5831 8.170061 CCCATTCCCATTCTTATTAGGTTCATA 58.830 37.037 0.00 0.00 0.00 2.15
5178 5840 3.580039 CCAGCCCATTCCCATTCTTATT 58.420 45.455 0.00 0.00 0.00 1.40
5448 6110 0.535102 CTTCGTGTGGAAACAGGGCT 60.535 55.000 0.00 0.00 44.46 5.19
5650 6324 4.040706 ACCCTGCAAATTGTTCAACATCAT 59.959 37.500 0.00 0.00 0.00 2.45
5655 6329 3.177997 ACACCCTGCAAATTGTTCAAC 57.822 42.857 0.00 0.00 0.00 3.18
5657 6331 2.102252 GGAACACCCTGCAAATTGTTCA 59.898 45.455 24.41 0.00 46.40 3.18
5755 6429 4.210331 GGTTCTGGTATTGCTCCATGAAT 58.790 43.478 0.00 0.00 34.26 2.57
5774 6448 0.034059 CTTCACAGCCTCGAGTGGTT 59.966 55.000 12.31 0.00 36.43 3.67
5926 6601 6.385649 ACCGAACATTTCCGCATATAATTT 57.614 33.333 0.00 0.00 0.00 1.82
5929 6604 3.810941 GGACCGAACATTTCCGCATATAA 59.189 43.478 0.00 0.00 0.00 0.98
5943 6619 7.870954 TCATCATATGTAGTAAATGGACCGAAC 59.129 37.037 1.90 0.00 0.00 3.95
5964 6640 5.822519 GGAGCCAACAATTACAGTATCATCA 59.177 40.000 0.00 0.00 0.00 3.07
5965 6641 5.822519 TGGAGCCAACAATTACAGTATCATC 59.177 40.000 0.00 0.00 0.00 2.92
6052 6734 5.842978 GCATACTGCCTTAGCTAAAGCTCG 61.843 50.000 23.88 17.67 43.84 5.03
6057 6739 3.565482 GCATGCATACTGCCTTAGCTAAA 59.435 43.478 14.21 0.00 44.23 1.85
6102 6788 7.380431 ACAGTAGCATATAGTATCTCGTTCC 57.620 40.000 0.00 0.00 0.00 3.62
6103 6789 9.153721 AGTACAGTAGCATATAGTATCTCGTTC 57.846 37.037 0.00 0.00 0.00 3.95
6104 6790 9.504708 AAGTACAGTAGCATATAGTATCTCGTT 57.495 33.333 0.00 0.00 0.00 3.85
6119 7053 8.438676 ACCAATTGATTGATAAGTACAGTAGC 57.561 34.615 7.12 0.00 40.14 3.58
6142 7076 6.801862 GTGTTGCTGTATTGTATCAGAAAACC 59.198 38.462 0.00 0.00 31.95 3.27
6157 7093 1.899814 CAGGGAGTAGGTGTTGCTGTA 59.100 52.381 0.00 0.00 0.00 2.74
6165 7101 1.205893 GTCAGAAGCAGGGAGTAGGTG 59.794 57.143 0.00 0.00 0.00 4.00
6192 7128 5.859205 ATTCAGGGAGTGCATATTTTTCC 57.141 39.130 0.00 0.00 0.00 3.13
6257 7193 6.670902 AGGACTGCCCTTATAACAAACTAGTA 59.329 38.462 0.00 0.00 44.85 1.82
6258 7194 5.487845 AGGACTGCCCTTATAACAAACTAGT 59.512 40.000 0.00 0.00 44.85 2.57
6259 7195 5.990668 AGGACTGCCCTTATAACAAACTAG 58.009 41.667 0.00 0.00 44.85 2.57
6560 7496 0.394352 ACCCTGGGTACGGTACTACG 60.394 60.000 18.99 6.33 32.11 3.51
6569 7505 4.202388 TGTTCTTTGACTTACCCTGGGTAC 60.202 45.833 25.09 14.32 37.97 3.34
6591 7527 7.496920 TGTGAACATCTAGAAGCAGGAATATTG 59.503 37.037 0.00 0.00 0.00 1.90
6598 7534 4.573900 ACTTGTGAACATCTAGAAGCAGG 58.426 43.478 0.00 0.00 0.00 4.85
6610 7546 1.133915 GGGGACTGGAACTTGTGAACA 60.134 52.381 0.00 0.00 0.00 3.18
6639 7575 9.686683 AATAGCTATATGTGACTGGTTCTTTTT 57.313 29.630 6.68 0.00 0.00 1.94
6640 7576 9.113838 CAATAGCTATATGTGACTGGTTCTTTT 57.886 33.333 6.68 0.00 0.00 2.27
6641 7577 8.486210 TCAATAGCTATATGTGACTGGTTCTTT 58.514 33.333 6.68 0.00 0.00 2.52
6717 7653 6.828788 TGGCCACATATCATTGCATTTTTAT 58.171 32.000 0.00 0.00 0.00 1.40
6814 7750 1.269883 TGAGGTTTCTTGCGCGAGTTA 60.270 47.619 23.78 10.94 0.00 2.24
6816 7752 0.320771 ATGAGGTTTCTTGCGCGAGT 60.321 50.000 23.78 4.34 0.00 4.18
6817 7753 0.371645 GATGAGGTTTCTTGCGCGAG 59.628 55.000 19.15 19.15 0.00 5.03
6818 7754 0.037326 AGATGAGGTTTCTTGCGCGA 60.037 50.000 12.10 0.00 0.00 5.87
6819 7755 1.590238 CTAGATGAGGTTTCTTGCGCG 59.410 52.381 0.00 0.00 0.00 6.86
6820 7756 1.328986 GCTAGATGAGGTTTCTTGCGC 59.671 52.381 0.00 0.00 33.53 6.09
6821 7757 2.898705 AGCTAGATGAGGTTTCTTGCG 58.101 47.619 0.00 0.00 43.66 4.85
6822 7758 8.614469 AATATTAGCTAGATGAGGTTTCTTGC 57.386 34.615 0.00 0.00 40.69 4.01
6850 7947 3.062122 ACCCGTGTTGTTTCCGAATAT 57.938 42.857 0.00 0.00 0.00 1.28
6851 7948 2.547299 ACCCGTGTTGTTTCCGAATA 57.453 45.000 0.00 0.00 0.00 1.75
6852 7949 1.335496 CAACCCGTGTTGTTTCCGAAT 59.665 47.619 2.26 0.00 45.51 3.34
6853 7950 0.733729 CAACCCGTGTTGTTTCCGAA 59.266 50.000 2.26 0.00 45.51 4.30
6901 7999 2.156504 CCGCATCTCGCACAGATTTATC 59.843 50.000 0.00 0.00 40.20 1.75
6909 8007 2.379634 CGTTTCCGCATCTCGCACA 61.380 57.895 0.00 0.00 42.60 4.57
6910 8008 2.279937 GACGTTTCCGCATCTCGCAC 62.280 60.000 0.00 0.00 42.60 5.34
6911 8009 2.048597 ACGTTTCCGCATCTCGCA 60.049 55.556 0.00 0.00 42.60 5.10
6912 8010 1.352156 AAGACGTTTCCGCATCTCGC 61.352 55.000 0.00 0.00 37.70 5.03
6913 8011 1.582502 GTAAGACGTTTCCGCATCTCG 59.417 52.381 0.00 0.00 37.70 4.04
6914 8012 1.925185 GGTAAGACGTTTCCGCATCTC 59.075 52.381 0.00 0.00 37.70 2.75
6915 8013 1.549170 AGGTAAGACGTTTCCGCATCT 59.451 47.619 0.00 0.00 37.70 2.90
6916 8014 1.925185 GAGGTAAGACGTTTCCGCATC 59.075 52.381 0.00 0.00 37.70 3.91
6917 8015 1.734707 CGAGGTAAGACGTTTCCGCAT 60.735 52.381 0.00 0.00 37.70 4.73
6918 8016 0.387622 CGAGGTAAGACGTTTCCGCA 60.388 55.000 0.00 0.00 37.70 5.69
6919 8017 1.074872 CCGAGGTAAGACGTTTCCGC 61.075 60.000 0.00 0.00 37.70 5.54
6920 8018 0.242017 ACCGAGGTAAGACGTTTCCG 59.758 55.000 0.00 0.00 40.83 4.30
6921 8019 1.706443 CACCGAGGTAAGACGTTTCC 58.294 55.000 0.00 0.00 0.00 3.13
6922 8020 1.066136 GCACCGAGGTAAGACGTTTC 58.934 55.000 0.00 0.00 0.00 2.78
6923 8021 0.665369 CGCACCGAGGTAAGACGTTT 60.665 55.000 0.00 0.00 0.00 3.60
6924 8022 1.080974 CGCACCGAGGTAAGACGTT 60.081 57.895 0.00 0.00 0.00 3.99
6925 8023 1.968017 TCGCACCGAGGTAAGACGT 60.968 57.895 0.00 0.00 0.00 4.34
6926 8024 2.872557 TCGCACCGAGGTAAGACG 59.127 61.111 0.00 0.00 0.00 4.18
6937 8035 3.819877 AAACACGTCCCCTCGCACC 62.820 63.158 0.00 0.00 0.00 5.01
6938 8036 2.280592 AAACACGTCCCCTCGCAC 60.281 61.111 0.00 0.00 0.00 5.34
6939 8037 2.029964 GAAACACGTCCCCTCGCA 59.970 61.111 0.00 0.00 0.00 5.10
6940 8038 1.375523 ATGAAACACGTCCCCTCGC 60.376 57.895 0.00 0.00 0.00 5.03
6941 8039 0.320421 ACATGAAACACGTCCCCTCG 60.320 55.000 0.00 0.00 0.00 4.63
6942 8040 1.892209 AACATGAAACACGTCCCCTC 58.108 50.000 0.00 0.00 0.00 4.30
6943 8041 3.713826 ATAACATGAAACACGTCCCCT 57.286 42.857 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.