Multiple sequence alignment - TraesCS2B01G280500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G280500 chr2B 100.000 5688 0 0 1 5688 387082571 387076884 0.000000e+00 10504.0
1 TraesCS2B01G280500 chr2B 96.409 362 13 0 1 362 73791486 73791125 1.050000e-166 597.0
2 TraesCS2B01G280500 chr2B 94.054 370 19 3 1 369 8420963 8420596 4.980000e-155 558.0
3 TraesCS2B01G280500 chr2A 96.497 4139 116 12 1566 5688 412507871 412511996 0.000000e+00 6813.0
4 TraesCS2B01G280500 chr2A 94.086 558 26 4 833 1384 412507220 412507776 0.000000e+00 841.0
5 TraesCS2B01G280500 chr2A 85.429 350 29 4 424 772 412478048 412478376 1.520000e-90 344.0
6 TraesCS2B01G280500 chr2A 96.939 98 3 0 1432 1529 412507777 412507874 1.270000e-36 165.0
7 TraesCS2B01G280500 chr2D 95.418 3230 109 20 2478 5688 318557226 318554017 0.000000e+00 5108.0
8 TraesCS2B01G280500 chr2D 94.409 465 17 4 896 1357 318558570 318558112 0.000000e+00 706.0
9 TraesCS2B01G280500 chr2D 93.659 410 18 4 368 772 318561188 318560782 1.750000e-169 606.0
10 TraesCS2B01G280500 chr2D 88.889 405 34 7 1852 2247 318557729 318557327 6.620000e-134 488.0
11 TraesCS2B01G280500 chr2D 93.269 104 0 4 793 893 318560707 318560608 4.590000e-31 147.0
12 TraesCS2B01G280500 chr2D 88.571 105 6 4 2329 2433 318557329 318557231 7.740000e-24 122.0
13 TraesCS2B01G280500 chr5B 95.592 363 14 2 1 362 528552453 528552814 1.060000e-161 580.0
14 TraesCS2B01G280500 chr5B 93.956 364 16 5 1 362 11463359 11463000 3.880000e-151 545.0
15 TraesCS2B01G280500 chr1B 95.330 364 14 3 1 363 138577788 138578149 4.940000e-160 575.0
16 TraesCS2B01G280500 chr1B 94.521 365 17 3 1 363 283912952 283913315 1.380000e-155 560.0
17 TraesCS2B01G280500 chr1B 94.278 367 16 4 1 363 249227765 249227400 1.790000e-154 556.0
18 TraesCS2B01G280500 chr1A 95.041 363 18 0 1 363 487684898 487684536 6.390000e-159 571.0
19 TraesCS2B01G280500 chr6B 93.132 364 22 3 1 363 706619805 706620166 1.090000e-146 531.0
20 TraesCS2B01G280500 chr6A 90.476 42 4 0 1482 1523 68561786 68561827 7.960000e-04 56.5
21 TraesCS2B01G280500 chr6A 90.476 42 4 0 1482 1523 68570060 68570101 7.960000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G280500 chr2B 387076884 387082571 5687 True 10504.000000 10504 100.000000 1 5688 1 chr2B.!!$R3 5687
1 TraesCS2B01G280500 chr2A 412507220 412511996 4776 False 2606.333333 6813 95.840667 833 5688 3 chr2A.!!$F2 4855
2 TraesCS2B01G280500 chr2D 318554017 318561188 7171 True 1196.166667 5108 92.369167 368 5688 6 chr2D.!!$R1 5320

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
113 114 0.030638 GCAGGATCAGACTCTCGCTC 59.969 60.000 0.00 0.0 0.00 5.03 F
127 128 0.175760 TCGCTCTTCACTATGTGCCC 59.824 55.000 0.00 0.0 32.98 5.36 F
128 129 0.176680 CGCTCTTCACTATGTGCCCT 59.823 55.000 0.00 0.0 32.98 5.19 F
1420 3519 0.178068 GCCCGGAGATGCTCTGTAAA 59.822 55.000 0.73 0.0 35.27 2.01 F
3155 5394 1.065854 CCGAGCCACTCCTCATTTTCT 60.066 52.381 0.00 0.0 0.00 2.52 F
3325 5564 0.034756 CACTGGTGTTCCATGTCGGA 59.965 55.000 0.00 0.0 43.43 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1374 3473 0.476338 CGGAGATGAGGAGGAGGAGA 59.524 60.000 0.00 0.00 0.00 3.71 R
1437 3536 0.976073 CAGGGAGGGACGGCTAAAGA 60.976 60.000 0.00 0.00 0.00 2.52 R
1442 3541 1.762460 CATACAGGGAGGGACGGCT 60.762 63.158 0.00 0.00 0.00 5.52 R
3325 5564 0.751643 GCACGGAGGCATGGGTAATT 60.752 55.000 0.00 0.00 0.00 1.40 R
4661 6912 0.107165 ATAAGGTCGCCCTCTTTGCC 60.107 55.000 0.00 0.00 41.56 4.52 R
5173 7425 0.034089 TGGAGAGATCTCAGCCGTCA 60.034 55.000 24.39 9.84 44.60 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.747108 CAGTACTGGTGCTATCAGTATTGC 59.253 45.833 15.49 7.74 45.70 3.56
25 26 2.826428 ACTGGTGCTATCAGTATTGCG 58.174 47.619 5.59 0.00 42.91 4.85
26 27 1.528586 CTGGTGCTATCAGTATTGCGC 59.471 52.381 0.00 0.00 41.66 6.09
27 28 0.508641 GGTGCTATCAGTATTGCGCG 59.491 55.000 0.00 0.00 42.80 6.86
28 29 1.209128 GTGCTATCAGTATTGCGCGT 58.791 50.000 8.43 0.00 36.74 6.01
29 30 1.071239 GTGCTATCAGTATTGCGCGTG 60.071 52.381 8.43 0.00 36.74 5.34
30 31 1.202359 TGCTATCAGTATTGCGCGTGA 60.202 47.619 8.43 1.96 36.74 4.35
31 32 1.190323 GCTATCAGTATTGCGCGTGAC 59.810 52.381 8.43 0.00 0.00 3.67
32 33 1.787155 CTATCAGTATTGCGCGTGACC 59.213 52.381 8.43 0.00 0.00 4.02
33 34 0.810031 ATCAGTATTGCGCGTGACCC 60.810 55.000 8.43 0.00 0.00 4.46
34 35 2.508439 AGTATTGCGCGTGACCCG 60.508 61.111 8.43 0.00 40.40 5.28
35 36 3.560278 GTATTGCGCGTGACCCGG 61.560 66.667 8.43 0.00 36.94 5.73
36 37 4.071875 TATTGCGCGTGACCCGGT 62.072 61.111 8.43 0.00 36.94 5.28
42 43 4.980805 GCGTGACCCGGTGAAGCA 62.981 66.667 9.92 0.00 36.94 3.91
43 44 2.047274 CGTGACCCGGTGAAGCAT 60.047 61.111 0.00 0.00 0.00 3.79
44 45 2.390599 CGTGACCCGGTGAAGCATG 61.391 63.158 0.00 0.00 0.00 4.06
45 46 1.003839 GTGACCCGGTGAAGCATGA 60.004 57.895 0.00 0.00 0.00 3.07
46 47 1.021390 GTGACCCGGTGAAGCATGAG 61.021 60.000 0.00 0.00 0.00 2.90
47 48 2.045926 ACCCGGTGAAGCATGAGC 60.046 61.111 0.00 0.00 42.56 4.26
68 69 1.016627 CACCAAGCATATCGGTGTGG 58.983 55.000 0.00 0.00 44.27 4.17
69 70 0.908910 ACCAAGCATATCGGTGTGGA 59.091 50.000 0.00 0.00 31.63 4.02
70 71 1.490490 ACCAAGCATATCGGTGTGGAT 59.510 47.619 0.00 0.00 31.63 3.41
71 72 1.875514 CCAAGCATATCGGTGTGGATG 59.124 52.381 0.00 0.00 0.00 3.51
72 73 1.265095 CAAGCATATCGGTGTGGATGC 59.735 52.381 0.00 0.00 44.05 3.91
73 74 0.250467 AGCATATCGGTGTGGATGCC 60.250 55.000 0.00 0.00 44.65 4.40
74 75 1.237285 GCATATCGGTGTGGATGCCC 61.237 60.000 0.00 0.00 39.00 5.36
75 76 0.108396 CATATCGGTGTGGATGCCCA 59.892 55.000 0.00 0.00 40.95 5.36
83 84 3.776158 TGGATGCCCACTTTGTGC 58.224 55.556 0.00 0.00 37.58 4.57
84 85 2.267351 TGGATGCCCACTTTGTGCG 61.267 57.895 0.00 0.00 37.58 5.34
85 86 2.268076 GGATGCCCACTTTGTGCGT 61.268 57.895 0.00 0.00 31.34 5.24
86 87 1.081242 GATGCCCACTTTGTGCGTG 60.081 57.895 0.00 0.00 31.34 5.34
87 88 3.211564 ATGCCCACTTTGTGCGTGC 62.212 57.895 0.00 0.00 31.34 5.34
88 89 3.595758 GCCCACTTTGTGCGTGCT 61.596 61.111 0.00 0.00 31.34 4.40
89 90 2.332514 CCCACTTTGTGCGTGCTG 59.667 61.111 0.00 0.00 31.34 4.41
90 91 2.353839 CCACTTTGTGCGTGCTGC 60.354 61.111 0.00 0.00 46.70 5.25
91 92 2.717485 CACTTTGTGCGTGCTGCT 59.283 55.556 0.00 0.00 46.63 4.24
92 93 1.656263 CACTTTGTGCGTGCTGCTG 60.656 57.895 0.00 0.00 46.63 4.41
93 94 2.114670 ACTTTGTGCGTGCTGCTGT 61.115 52.632 0.00 0.00 46.63 4.40
94 95 1.656263 CTTTGTGCGTGCTGCTGTG 60.656 57.895 0.00 0.00 46.63 3.66
95 96 3.754740 TTTGTGCGTGCTGCTGTGC 62.755 57.895 0.00 2.73 46.63 4.57
106 107 2.369654 TGCTGTGCAGGATCAGACT 58.630 52.632 6.25 0.00 33.32 3.24
107 108 0.248565 TGCTGTGCAGGATCAGACTC 59.751 55.000 6.25 0.00 33.32 3.36
108 109 0.536260 GCTGTGCAGGATCAGACTCT 59.464 55.000 6.25 0.00 34.02 3.24
109 110 1.471327 GCTGTGCAGGATCAGACTCTC 60.471 57.143 6.25 0.00 34.02 3.20
110 111 0.813821 TGTGCAGGATCAGACTCTCG 59.186 55.000 0.00 0.00 0.00 4.04
111 112 0.527385 GTGCAGGATCAGACTCTCGC 60.527 60.000 0.00 0.00 0.00 5.03
112 113 0.682532 TGCAGGATCAGACTCTCGCT 60.683 55.000 0.00 0.00 0.00 4.93
113 114 0.030638 GCAGGATCAGACTCTCGCTC 59.969 60.000 0.00 0.00 0.00 5.03
114 115 1.679139 CAGGATCAGACTCTCGCTCT 58.321 55.000 0.00 0.00 0.00 4.09
115 116 2.023673 CAGGATCAGACTCTCGCTCTT 58.976 52.381 0.00 0.00 0.00 2.85
116 117 2.033299 CAGGATCAGACTCTCGCTCTTC 59.967 54.545 0.00 0.00 0.00 2.87
117 118 2.020720 GGATCAGACTCTCGCTCTTCA 58.979 52.381 0.00 0.00 0.00 3.02
118 119 2.223479 GGATCAGACTCTCGCTCTTCAC 60.223 54.545 0.00 0.00 0.00 3.18
119 120 2.192664 TCAGACTCTCGCTCTTCACT 57.807 50.000 0.00 0.00 0.00 3.41
120 121 3.336138 TCAGACTCTCGCTCTTCACTA 57.664 47.619 0.00 0.00 0.00 2.74
121 122 3.879998 TCAGACTCTCGCTCTTCACTAT 58.120 45.455 0.00 0.00 0.00 2.12
122 123 3.625313 TCAGACTCTCGCTCTTCACTATG 59.375 47.826 0.00 0.00 0.00 2.23
123 124 3.376859 CAGACTCTCGCTCTTCACTATGT 59.623 47.826 0.00 0.00 0.00 2.29
124 125 3.376859 AGACTCTCGCTCTTCACTATGTG 59.623 47.826 0.00 0.00 34.45 3.21
125 126 2.159310 ACTCTCGCTCTTCACTATGTGC 60.159 50.000 0.00 0.00 32.98 4.57
126 127 1.135139 TCTCGCTCTTCACTATGTGCC 59.865 52.381 0.00 0.00 32.98 5.01
127 128 0.175760 TCGCTCTTCACTATGTGCCC 59.824 55.000 0.00 0.00 32.98 5.36
128 129 0.176680 CGCTCTTCACTATGTGCCCT 59.823 55.000 0.00 0.00 32.98 5.19
129 130 1.804372 CGCTCTTCACTATGTGCCCTC 60.804 57.143 0.00 0.00 32.98 4.30
130 131 1.484240 GCTCTTCACTATGTGCCCTCT 59.516 52.381 0.00 0.00 32.98 3.69
131 132 2.695666 GCTCTTCACTATGTGCCCTCTA 59.304 50.000 0.00 0.00 32.98 2.43
132 133 3.133003 GCTCTTCACTATGTGCCCTCTAA 59.867 47.826 0.00 0.00 32.98 2.10
133 134 4.739137 GCTCTTCACTATGTGCCCTCTAAG 60.739 50.000 0.00 0.00 32.98 2.18
134 135 4.353777 TCTTCACTATGTGCCCTCTAAGT 58.646 43.478 0.00 0.00 32.98 2.24
135 136 4.777896 TCTTCACTATGTGCCCTCTAAGTT 59.222 41.667 0.00 0.00 32.98 2.66
136 137 5.955959 TCTTCACTATGTGCCCTCTAAGTTA 59.044 40.000 0.00 0.00 32.98 2.24
137 138 6.611642 TCTTCACTATGTGCCCTCTAAGTTAT 59.388 38.462 0.00 0.00 32.98 1.89
138 139 7.783119 TCTTCACTATGTGCCCTCTAAGTTATA 59.217 37.037 0.00 0.00 32.98 0.98
139 140 7.526142 TCACTATGTGCCCTCTAAGTTATAG 57.474 40.000 0.00 0.00 32.98 1.31
140 141 7.067421 TCACTATGTGCCCTCTAAGTTATAGT 58.933 38.462 0.00 0.00 32.98 2.12
141 142 7.563924 TCACTATGTGCCCTCTAAGTTATAGTT 59.436 37.037 0.00 0.00 32.98 2.24
142 143 7.653713 CACTATGTGCCCTCTAAGTTATAGTTG 59.346 40.741 0.00 0.00 30.19 3.16
143 144 5.353394 TGTGCCCTCTAAGTTATAGTTGG 57.647 43.478 0.00 0.00 0.00 3.77
144 145 4.127907 GTGCCCTCTAAGTTATAGTTGGC 58.872 47.826 7.98 7.98 34.93 4.52
145 146 4.037927 TGCCCTCTAAGTTATAGTTGGCT 58.962 43.478 13.21 0.00 35.19 4.75
146 147 4.141711 TGCCCTCTAAGTTATAGTTGGCTG 60.142 45.833 13.21 0.00 35.19 4.85
147 148 4.101119 GCCCTCTAAGTTATAGTTGGCTGA 59.899 45.833 7.77 0.00 33.12 4.26
148 149 5.602628 CCCTCTAAGTTATAGTTGGCTGAC 58.397 45.833 0.00 0.00 0.00 3.51
149 150 5.364157 CCCTCTAAGTTATAGTTGGCTGACT 59.636 44.000 0.18 0.18 0.00 3.41
150 151 6.127026 CCCTCTAAGTTATAGTTGGCTGACTT 60.127 42.308 0.00 0.00 32.52 3.01
151 152 6.981559 CCTCTAAGTTATAGTTGGCTGACTTC 59.018 42.308 0.00 0.00 31.28 3.01
152 153 7.147811 CCTCTAAGTTATAGTTGGCTGACTTCT 60.148 40.741 0.00 0.00 31.28 2.85
153 154 8.135382 TCTAAGTTATAGTTGGCTGACTTCTT 57.865 34.615 0.00 0.00 31.28 2.52
154 155 8.251721 TCTAAGTTATAGTTGGCTGACTTCTTC 58.748 37.037 0.00 0.00 31.28 2.87
155 156 6.360370 AGTTATAGTTGGCTGACTTCTTCA 57.640 37.500 0.00 0.00 0.00 3.02
156 157 6.166982 AGTTATAGTTGGCTGACTTCTTCAC 58.833 40.000 0.00 0.00 0.00 3.18
157 158 1.871080 AGTTGGCTGACTTCTTCACG 58.129 50.000 0.00 0.00 0.00 4.35
158 159 1.412710 AGTTGGCTGACTTCTTCACGA 59.587 47.619 0.00 0.00 0.00 4.35
159 160 2.158957 AGTTGGCTGACTTCTTCACGAA 60.159 45.455 0.00 0.00 0.00 3.85
167 168 2.154854 CTTCTTCACGAAGGCACAGA 57.845 50.000 6.94 0.00 44.37 3.41
168 169 1.795286 CTTCTTCACGAAGGCACAGAC 59.205 52.381 6.94 0.00 44.37 3.51
169 170 1.040646 TCTTCACGAAGGCACAGACT 58.959 50.000 6.94 0.00 38.88 3.24
170 171 1.000163 TCTTCACGAAGGCACAGACTC 60.000 52.381 6.94 0.00 38.88 3.36
171 172 0.318699 TTCACGAAGGCACAGACTCG 60.319 55.000 0.00 0.00 0.00 4.18
172 173 1.170290 TCACGAAGGCACAGACTCGA 61.170 55.000 0.00 0.00 0.00 4.04
173 174 0.730834 CACGAAGGCACAGACTCGAG 60.731 60.000 11.84 11.84 0.00 4.04
174 175 1.803519 CGAAGGCACAGACTCGAGC 60.804 63.158 13.61 5.49 0.00 5.03
175 176 1.803519 GAAGGCACAGACTCGAGCG 60.804 63.158 13.61 3.76 0.00 5.03
176 177 3.923563 AAGGCACAGACTCGAGCGC 62.924 63.158 13.61 0.00 0.00 5.92
177 178 4.724602 GGCACAGACTCGAGCGCA 62.725 66.667 13.61 0.00 0.00 6.09
178 179 3.177920 GCACAGACTCGAGCGCAG 61.178 66.667 13.61 2.69 0.00 5.18
193 194 2.199291 CGCAGCATGGATTTTTCCTC 57.801 50.000 0.00 0.00 35.86 3.71
194 195 1.747355 CGCAGCATGGATTTTTCCTCT 59.253 47.619 0.00 0.00 35.86 3.69
195 196 2.223433 CGCAGCATGGATTTTTCCTCTC 60.223 50.000 0.00 0.00 35.86 3.20
196 197 2.100418 GCAGCATGGATTTTTCCTCTCC 59.900 50.000 0.00 0.00 35.86 3.71
197 198 3.359033 CAGCATGGATTTTTCCTCTCCA 58.641 45.455 0.00 0.00 42.95 3.86
198 199 3.765511 CAGCATGGATTTTTCCTCTCCAA 59.234 43.478 0.00 0.00 42.12 3.53
199 200 4.221262 CAGCATGGATTTTTCCTCTCCAAA 59.779 41.667 0.00 0.00 42.12 3.28
200 201 4.221482 AGCATGGATTTTTCCTCTCCAAAC 59.779 41.667 0.00 0.00 42.12 2.93
201 202 4.221482 GCATGGATTTTTCCTCTCCAAACT 59.779 41.667 0.00 0.00 42.12 2.66
202 203 5.623141 GCATGGATTTTTCCTCTCCAAACTC 60.623 44.000 0.00 0.00 42.12 3.01
203 204 4.072131 TGGATTTTTCCTCTCCAAACTCG 58.928 43.478 0.00 0.00 36.15 4.18
204 205 3.440522 GGATTTTTCCTCTCCAAACTCGG 59.559 47.826 0.00 0.00 0.00 4.63
205 206 3.570912 TTTTTCCTCTCCAAACTCGGT 57.429 42.857 0.00 0.00 0.00 4.69
206 207 2.543777 TTTCCTCTCCAAACTCGGTG 57.456 50.000 0.00 0.00 0.00 4.94
207 208 1.420430 TTCCTCTCCAAACTCGGTGT 58.580 50.000 0.00 0.00 0.00 4.16
208 209 1.420430 TCCTCTCCAAACTCGGTGTT 58.580 50.000 0.00 0.00 41.29 3.32
209 210 1.070134 TCCTCTCCAAACTCGGTGTTG 59.930 52.381 0.00 0.00 39.13 3.33
210 211 1.202651 CCTCTCCAAACTCGGTGTTGT 60.203 52.381 0.00 0.00 39.13 3.32
211 212 2.561569 CTCTCCAAACTCGGTGTTGTT 58.438 47.619 0.00 0.00 39.13 2.83
212 213 2.285083 TCTCCAAACTCGGTGTTGTTG 58.715 47.619 0.00 0.00 39.13 3.33
213 214 2.093394 TCTCCAAACTCGGTGTTGTTGA 60.093 45.455 0.00 0.00 39.13 3.18
214 215 2.878406 CTCCAAACTCGGTGTTGTTGAT 59.122 45.455 0.00 0.00 39.13 2.57
215 216 2.875933 TCCAAACTCGGTGTTGTTGATC 59.124 45.455 0.00 0.00 39.13 2.92
216 217 2.031157 CCAAACTCGGTGTTGTTGATCC 60.031 50.000 0.00 0.00 39.13 3.36
217 218 2.616376 CAAACTCGGTGTTGTTGATCCA 59.384 45.455 0.00 0.00 39.13 3.41
218 219 1.878953 ACTCGGTGTTGTTGATCCAC 58.121 50.000 0.00 0.00 0.00 4.02
219 220 1.156736 CTCGGTGTTGTTGATCCACC 58.843 55.000 7.76 7.76 44.16 4.61
223 224 2.513753 GGTGTTGTTGATCCACCATGA 58.486 47.619 11.83 0.00 46.33 3.07
224 225 2.489329 GGTGTTGTTGATCCACCATGAG 59.511 50.000 11.83 0.00 46.33 2.90
225 226 3.149196 GTGTTGTTGATCCACCATGAGT 58.851 45.455 0.00 0.00 0.00 3.41
226 227 3.569701 GTGTTGTTGATCCACCATGAGTT 59.430 43.478 0.00 0.00 0.00 3.01
227 228 4.037923 GTGTTGTTGATCCACCATGAGTTT 59.962 41.667 0.00 0.00 0.00 2.66
228 229 4.037803 TGTTGTTGATCCACCATGAGTTTG 59.962 41.667 0.00 0.00 0.00 2.93
229 230 4.097551 TGTTGATCCACCATGAGTTTGA 57.902 40.909 0.00 0.00 0.00 2.69
230 231 4.074259 TGTTGATCCACCATGAGTTTGAG 58.926 43.478 0.00 0.00 0.00 3.02
231 232 3.354948 TGATCCACCATGAGTTTGAGG 57.645 47.619 0.00 0.00 0.00 3.86
232 233 2.025981 TGATCCACCATGAGTTTGAGGG 60.026 50.000 0.00 0.00 0.00 4.30
233 234 0.698238 TCCACCATGAGTTTGAGGGG 59.302 55.000 0.00 0.00 0.00 4.79
234 235 0.323725 CCACCATGAGTTTGAGGGGG 60.324 60.000 0.00 0.00 38.58 5.40
254 255 5.625568 GGGGGTGTTAGATGTGTATAGTT 57.374 43.478 0.00 0.00 0.00 2.24
255 256 5.608449 GGGGGTGTTAGATGTGTATAGTTC 58.392 45.833 0.00 0.00 0.00 3.01
256 257 5.129815 GGGGGTGTTAGATGTGTATAGTTCA 59.870 44.000 0.00 0.00 0.00 3.18
257 258 6.183361 GGGGGTGTTAGATGTGTATAGTTCAT 60.183 42.308 0.00 0.00 0.00 2.57
258 259 7.280356 GGGGTGTTAGATGTGTATAGTTCATT 58.720 38.462 0.00 0.00 0.00 2.57
259 260 7.226720 GGGGTGTTAGATGTGTATAGTTCATTG 59.773 40.741 0.00 0.00 0.00 2.82
260 261 7.769044 GGGTGTTAGATGTGTATAGTTCATTGT 59.231 37.037 0.00 0.00 0.00 2.71
261 262 9.811995 GGTGTTAGATGTGTATAGTTCATTGTA 57.188 33.333 0.00 0.00 0.00 2.41
269 270 9.944376 ATGTGTATAGTTCATTGTATACATCCC 57.056 33.333 6.36 0.00 41.74 3.85
270 271 8.372459 TGTGTATAGTTCATTGTATACATCCCC 58.628 37.037 6.36 0.00 41.74 4.81
271 272 8.372459 GTGTATAGTTCATTGTATACATCCCCA 58.628 37.037 6.36 0.00 41.74 4.96
272 273 9.111519 TGTATAGTTCATTGTATACATCCCCAT 57.888 33.333 6.36 0.00 37.25 4.00
273 274 9.601217 GTATAGTTCATTGTATACATCCCCATC 57.399 37.037 6.36 0.00 33.85 3.51
274 275 6.514012 AGTTCATTGTATACATCCCCATCA 57.486 37.500 6.36 0.00 0.00 3.07
275 276 7.095183 AGTTCATTGTATACATCCCCATCAT 57.905 36.000 6.36 0.00 0.00 2.45
276 277 8.218423 AGTTCATTGTATACATCCCCATCATA 57.782 34.615 6.36 0.00 0.00 2.15
277 278 8.839745 AGTTCATTGTATACATCCCCATCATAT 58.160 33.333 6.36 0.00 0.00 1.78
281 282 9.565090 CATTGTATACATCCCCATCATATAAGG 57.435 37.037 6.36 0.00 0.00 2.69
282 283 7.690454 TGTATACATCCCCATCATATAAGGG 57.310 40.000 0.08 0.00 42.44 3.95
290 291 5.003096 CCCATCATATAAGGGGCTTTTCT 57.997 43.478 0.00 0.00 38.98 2.52
291 292 4.768968 CCCATCATATAAGGGGCTTTTCTG 59.231 45.833 0.00 0.00 38.98 3.02
292 293 4.219288 CCATCATATAAGGGGCTTTTCTGC 59.781 45.833 0.00 0.00 0.00 4.26
293 294 4.518278 TCATATAAGGGGCTTTTCTGCA 57.482 40.909 0.00 0.00 34.04 4.41
294 295 5.065613 TCATATAAGGGGCTTTTCTGCAT 57.934 39.130 0.00 0.00 34.04 3.96
295 296 5.457686 TCATATAAGGGGCTTTTCTGCATT 58.542 37.500 0.00 0.00 34.04 3.56
296 297 5.898972 TCATATAAGGGGCTTTTCTGCATTT 59.101 36.000 0.00 0.00 34.04 2.32
297 298 6.383726 TCATATAAGGGGCTTTTCTGCATTTT 59.616 34.615 0.00 0.00 34.04 1.82
298 299 2.845363 AGGGGCTTTTCTGCATTTTG 57.155 45.000 0.00 0.00 34.04 2.44
299 300 1.159285 GGGGCTTTTCTGCATTTTGC 58.841 50.000 0.00 0.00 45.29 3.68
300 301 1.159285 GGGCTTTTCTGCATTTTGCC 58.841 50.000 8.70 8.70 44.23 4.52
301 302 1.542987 GGGCTTTTCTGCATTTTGCCA 60.543 47.619 16.03 0.00 44.23 4.92
302 303 1.532437 GGCTTTTCTGCATTTTGCCAC 59.468 47.619 11.34 0.00 44.23 5.01
303 304 2.211806 GCTTTTCTGCATTTTGCCACA 58.788 42.857 0.00 0.00 44.23 4.17
304 305 2.032636 GCTTTTCTGCATTTTGCCACAC 60.033 45.455 0.00 0.00 44.23 3.82
305 306 2.237393 TTTCTGCATTTTGCCACACC 57.763 45.000 0.00 0.00 44.23 4.16
306 307 1.412079 TTCTGCATTTTGCCACACCT 58.588 45.000 0.00 0.00 44.23 4.00
307 308 0.675083 TCTGCATTTTGCCACACCTG 59.325 50.000 0.00 0.00 44.23 4.00
308 309 0.390124 CTGCATTTTGCCACACCTGT 59.610 50.000 0.00 0.00 44.23 4.00
309 310 1.612950 CTGCATTTTGCCACACCTGTA 59.387 47.619 0.00 0.00 44.23 2.74
310 311 2.231964 CTGCATTTTGCCACACCTGTAT 59.768 45.455 0.00 0.00 44.23 2.29
311 312 3.425659 TGCATTTTGCCACACCTGTATA 58.574 40.909 0.00 0.00 44.23 1.47
312 313 4.022603 TGCATTTTGCCACACCTGTATAT 58.977 39.130 0.00 0.00 44.23 0.86
313 314 4.142204 TGCATTTTGCCACACCTGTATATG 60.142 41.667 0.00 0.00 44.23 1.78
314 315 4.142182 GCATTTTGCCACACCTGTATATGT 60.142 41.667 0.00 0.00 37.42 2.29
315 316 5.067153 GCATTTTGCCACACCTGTATATGTA 59.933 40.000 0.00 0.00 37.42 2.29
316 317 6.494842 CATTTTGCCACACCTGTATATGTAC 58.505 40.000 0.00 0.00 0.00 2.90
317 318 5.429681 TTTGCCACACCTGTATATGTACT 57.570 39.130 1.08 0.00 0.00 2.73
318 319 4.400529 TGCCACACCTGTATATGTACTG 57.599 45.455 1.08 0.65 0.00 2.74
326 327 4.389374 CCTGTATATGTACTGGCCTTTGG 58.611 47.826 11.66 0.00 41.24 3.28
339 340 2.087646 GCCTTTGGCTCTCAGTAAAGG 58.912 52.381 9.60 9.60 46.69 3.11
340 341 2.553247 GCCTTTGGCTCTCAGTAAAGGT 60.553 50.000 14.05 0.00 46.81 3.50
341 342 3.756117 CCTTTGGCTCTCAGTAAAGGTT 58.244 45.455 0.00 0.00 42.53 3.50
342 343 3.753797 CCTTTGGCTCTCAGTAAAGGTTC 59.246 47.826 0.00 0.00 42.53 3.62
343 344 4.389374 CTTTGGCTCTCAGTAAAGGTTCA 58.611 43.478 0.00 0.00 0.00 3.18
344 345 3.685139 TGGCTCTCAGTAAAGGTTCAG 57.315 47.619 0.00 0.00 0.00 3.02
345 346 2.972713 TGGCTCTCAGTAAAGGTTCAGT 59.027 45.455 0.00 0.00 0.00 3.41
346 347 3.391296 TGGCTCTCAGTAAAGGTTCAGTT 59.609 43.478 0.00 0.00 0.00 3.16
347 348 3.748568 GGCTCTCAGTAAAGGTTCAGTTG 59.251 47.826 0.00 0.00 0.00 3.16
348 349 3.187432 GCTCTCAGTAAAGGTTCAGTTGC 59.813 47.826 0.00 0.00 0.00 4.17
349 350 4.636249 CTCTCAGTAAAGGTTCAGTTGCT 58.364 43.478 0.00 0.00 0.00 3.91
350 351 4.380531 TCTCAGTAAAGGTTCAGTTGCTG 58.619 43.478 0.00 0.00 38.40 4.41
351 352 4.130118 CTCAGTAAAGGTTCAGTTGCTGT 58.870 43.478 0.00 0.00 38.27 4.40
352 353 4.523083 TCAGTAAAGGTTCAGTTGCTGTT 58.477 39.130 0.00 0.00 38.27 3.16
353 354 4.947388 TCAGTAAAGGTTCAGTTGCTGTTT 59.053 37.500 0.00 0.00 38.27 2.83
354 355 6.116806 TCAGTAAAGGTTCAGTTGCTGTTTA 58.883 36.000 0.00 0.00 38.27 2.01
355 356 6.770785 TCAGTAAAGGTTCAGTTGCTGTTTAT 59.229 34.615 0.00 0.00 38.27 1.40
356 357 7.041372 TCAGTAAAGGTTCAGTTGCTGTTTATC 60.041 37.037 0.00 0.00 38.27 1.75
357 358 5.453567 AAAGGTTCAGTTGCTGTTTATCC 57.546 39.130 0.00 0.00 32.61 2.59
358 359 4.098914 AGGTTCAGTTGCTGTTTATCCA 57.901 40.909 0.00 0.00 32.61 3.41
359 360 4.469657 AGGTTCAGTTGCTGTTTATCCAA 58.530 39.130 0.00 0.00 32.61 3.53
360 361 4.278419 AGGTTCAGTTGCTGTTTATCCAAC 59.722 41.667 0.00 0.00 39.20 3.77
361 362 4.037446 GGTTCAGTTGCTGTTTATCCAACA 59.963 41.667 5.66 0.00 43.55 3.33
386 387 2.776312 CATCACAATGATGCAGAGGC 57.224 50.000 5.90 0.00 46.37 4.70
507 508 2.093783 CGTCCTAACTCGTTGGAATTGC 59.906 50.000 0.00 0.00 0.00 3.56
511 512 2.681152 AACTCGTTGGAATTGCGTTC 57.319 45.000 0.00 0.00 36.04 3.95
573 574 7.492669 GTCATGTTTCTAGAATCGAATTCCTGA 59.507 37.037 5.89 0.00 40.13 3.86
647 650 2.710096 ATTAGGTTCACATCACCCGG 57.290 50.000 0.00 0.00 34.44 5.73
651 654 1.165270 GGTTCACATCACCCGGAAAG 58.835 55.000 0.73 0.00 0.00 2.62
661 667 2.092321 TCACCCGGAAAGAAAGGTTCAA 60.092 45.455 0.73 0.00 0.00 2.69
662 668 2.293399 CACCCGGAAAGAAAGGTTCAAG 59.707 50.000 0.73 0.00 0.00 3.02
696 702 4.497006 CCGCTTGAGCATTTTCCTCATAAG 60.497 45.833 3.65 0.00 38.95 1.73
865 928 0.180406 AGCTGGACTGGTTCGTGTTT 59.820 50.000 0.00 0.00 0.00 2.83
866 929 0.586802 GCTGGACTGGTTCGTGTTTC 59.413 55.000 0.00 0.00 0.00 2.78
867 930 1.226746 CTGGACTGGTTCGTGTTTCC 58.773 55.000 0.00 0.00 0.00 3.13
868 931 0.542333 TGGACTGGTTCGTGTTTCCA 59.458 50.000 0.00 0.00 0.00 3.53
869 932 1.142060 TGGACTGGTTCGTGTTTCCAT 59.858 47.619 0.00 0.00 0.00 3.41
925 3023 2.113139 CCAACGTGCCCTGTCCTT 59.887 61.111 0.00 0.00 0.00 3.36
965 3064 0.388006 TGCTCCGTACACACACATCG 60.388 55.000 0.00 0.00 0.00 3.84
977 3076 0.250038 ACACATCGCAGAGCACAAGT 60.250 50.000 0.00 0.00 43.63 3.16
980 3079 2.093310 CACATCGCAGAGCACAAGTAAG 59.907 50.000 0.00 0.00 43.63 2.34
1307 3406 0.530650 ATCGCGCTCATGGTACCAAG 60.531 55.000 20.76 15.59 0.00 3.61
1359 3458 8.272889 TCTTCTCCATTGATTTGATCTGATTCT 58.727 33.333 0.00 0.00 0.00 2.40
1361 3460 9.557061 TTCTCCATTGATTTGATCTGATTCTAG 57.443 33.333 0.00 0.00 0.00 2.43
1369 3468 4.559576 TGATCTGATTCTAGGGGAAGGA 57.440 45.455 0.00 0.00 37.36 3.36
1371 3470 3.336509 TCTGATTCTAGGGGAAGGAGG 57.663 52.381 0.00 0.00 37.36 4.30
1373 3472 1.295292 TGATTCTAGGGGAAGGAGGCT 59.705 52.381 0.00 0.00 37.36 4.58
1374 3473 2.293856 TGATTCTAGGGGAAGGAGGCTT 60.294 50.000 0.00 0.00 37.36 4.35
1377 3476 1.062810 TCTAGGGGAAGGAGGCTTCTC 60.063 57.143 0.00 0.00 36.81 2.87
1387 3486 2.100675 AGGCTTCTCCTCCTCCTCA 58.899 57.895 0.00 0.00 43.20 3.86
1388 3487 0.641601 AGGCTTCTCCTCCTCCTCAT 59.358 55.000 0.00 0.00 43.20 2.90
1389 3488 1.047801 GGCTTCTCCTCCTCCTCATC 58.952 60.000 0.00 0.00 0.00 2.92
1390 3489 1.412937 GGCTTCTCCTCCTCCTCATCT 60.413 57.143 0.00 0.00 0.00 2.90
1391 3490 1.963515 GCTTCTCCTCCTCCTCATCTC 59.036 57.143 0.00 0.00 0.00 2.75
1392 3491 2.597455 CTTCTCCTCCTCCTCATCTCC 58.403 57.143 0.00 0.00 0.00 3.71
1393 3492 0.476338 TCTCCTCCTCCTCATCTCCG 59.524 60.000 0.00 0.00 0.00 4.63
1394 3493 0.539438 CTCCTCCTCCTCATCTCCGG 60.539 65.000 0.00 0.00 0.00 5.14
1395 3494 2.206536 CCTCCTCCTCATCTCCGGC 61.207 68.421 0.00 0.00 0.00 6.13
1396 3495 2.519541 TCCTCCTCATCTCCGGCG 60.520 66.667 0.00 0.00 0.00 6.46
1397 3496 2.519541 CCTCCTCATCTCCGGCGA 60.520 66.667 9.30 0.00 0.00 5.54
1398 3497 2.725008 CTCCTCATCTCCGGCGAC 59.275 66.667 9.30 0.00 0.00 5.19
1399 3498 2.833582 TCCTCATCTCCGGCGACC 60.834 66.667 9.30 0.00 0.00 4.79
1400 3499 2.835431 CCTCATCTCCGGCGACCT 60.835 66.667 9.30 0.00 0.00 3.85
1401 3500 2.415010 CTCATCTCCGGCGACCTG 59.585 66.667 9.30 0.00 0.00 4.00
1402 3501 3.781770 CTCATCTCCGGCGACCTGC 62.782 68.421 9.30 0.00 45.38 4.85
1411 3510 4.899239 GCGACCTGCCCGGAGATG 62.899 72.222 0.73 0.00 37.76 2.90
1412 3511 4.899239 CGACCTGCCCGGAGATGC 62.899 72.222 0.73 0.00 36.31 3.91
1413 3512 3.474570 GACCTGCCCGGAGATGCT 61.475 66.667 0.73 0.00 36.31 3.79
1414 3513 3.453070 GACCTGCCCGGAGATGCTC 62.453 68.421 0.73 0.00 36.31 4.26
1415 3514 3.160047 CCTGCCCGGAGATGCTCT 61.160 66.667 0.73 0.00 33.16 4.09
1416 3515 2.108566 CTGCCCGGAGATGCTCTG 59.891 66.667 0.73 0.00 36.69 3.35
1417 3516 2.685017 TGCCCGGAGATGCTCTGT 60.685 61.111 0.73 0.00 35.27 3.41
1418 3517 1.381191 TGCCCGGAGATGCTCTGTA 60.381 57.895 0.73 0.00 35.27 2.74
1419 3518 0.975556 TGCCCGGAGATGCTCTGTAA 60.976 55.000 0.73 0.00 35.27 2.41
1420 3519 0.178068 GCCCGGAGATGCTCTGTAAA 59.822 55.000 0.73 0.00 35.27 2.01
1421 3520 1.406887 GCCCGGAGATGCTCTGTAAAA 60.407 52.381 0.73 0.00 35.27 1.52
1422 3521 2.939640 GCCCGGAGATGCTCTGTAAAAA 60.940 50.000 0.73 0.00 35.27 1.94
1423 3522 2.678336 CCCGGAGATGCTCTGTAAAAAC 59.322 50.000 0.73 0.00 35.27 2.43
1424 3523 2.348666 CCGGAGATGCTCTGTAAAAACG 59.651 50.000 0.00 0.00 35.27 3.60
1425 3524 2.993899 CGGAGATGCTCTGTAAAAACGT 59.006 45.455 0.00 0.00 32.64 3.99
1426 3525 3.060895 CGGAGATGCTCTGTAAAAACGTC 59.939 47.826 0.00 0.00 32.64 4.34
1427 3526 4.246458 GGAGATGCTCTGTAAAAACGTCT 58.754 43.478 0.00 0.00 0.00 4.18
1428 3527 4.691216 GGAGATGCTCTGTAAAAACGTCTT 59.309 41.667 0.00 0.00 0.00 3.01
1429 3528 5.163943 GGAGATGCTCTGTAAAAACGTCTTC 60.164 44.000 0.00 0.00 0.00 2.87
1430 3529 4.386049 AGATGCTCTGTAAAAACGTCTTCG 59.614 41.667 0.00 0.00 43.34 3.79
1533 3632 8.764524 CTCATATGAGCTTGGTATTTACCTAC 57.235 38.462 19.47 0.00 40.04 3.18
1534 3633 7.676947 TCATATGAGCTTGGTATTTACCTACC 58.323 38.462 0.00 0.00 46.58 3.18
1547 3646 8.683615 GGTATTTACCTACCATCTTTTCTTTGG 58.316 37.037 0.00 0.00 43.10 3.28
1548 3647 9.239551 GTATTTACCTACCATCTTTTCTTTGGT 57.760 33.333 0.00 0.00 45.48 3.67
1550 3649 5.584551 ACCTACCATCTTTTCTTTGGTCT 57.415 39.130 0.00 0.00 42.65 3.85
1562 3661 2.108075 TCTTTGGTCTCCTTTGCCATCA 59.892 45.455 0.00 0.00 31.71 3.07
1646 3769 8.613482 CATAGACATATGCTCCATCATTCATTC 58.387 37.037 1.58 0.00 32.79 2.67
1669 3798 7.815840 TCTATCACTTAGATCTGTCTCCAAG 57.184 40.000 5.18 2.16 38.19 3.61
1722 3851 6.341316 TGTCTGCAGATTAATTACTCAGACC 58.659 40.000 21.47 1.10 44.77 3.85
1807 3937 4.020573 TGGTTAGGTCCTTGACATGTACTG 60.021 45.833 0.00 0.00 33.68 2.74
1899 4112 3.010472 TGGCTTCTCAATCTTGGATTGGA 59.990 43.478 16.84 11.57 0.00 3.53
1928 4141 1.229428 TGAGGCTTTTTCACGAGCTG 58.771 50.000 0.00 0.00 38.89 4.24
2163 4376 4.938226 GGACTTGGACCAGACAAATTCTAG 59.062 45.833 0.00 0.00 31.12 2.43
2190 4412 4.520492 CCCTATTATGCTGGCACCTAAAAG 59.480 45.833 0.00 0.00 0.00 2.27
2194 4416 1.213799 GCTGGCACCTAAAAGCTGC 59.786 57.895 0.00 0.00 32.82 5.25
2221 4443 8.116753 CGCTTTAGTCCTTACACATTTATTCTG 58.883 37.037 0.00 0.00 0.00 3.02
2246 4469 2.997485 AGAAAAGTCCTTGCGCATTC 57.003 45.000 12.75 10.48 0.00 2.67
2342 4565 6.563222 CCATTTGGCTTCAAATTCAACATT 57.437 33.333 2.05 0.00 45.71 2.71
2345 4568 7.603404 CCATTTGGCTTCAAATTCAACATTAGA 59.397 33.333 2.05 0.00 45.71 2.10
2352 4575 9.801714 GCTTCAAATTCAACATTAGAAAACATG 57.198 29.630 0.00 0.00 0.00 3.21
2370 4593 3.057033 ACATGGAAGTGCAGCAGAAATTC 60.057 43.478 0.00 0.00 0.00 2.17
2379 4602 3.067601 TGCAGCAGAAATTCATGCATAGG 59.932 43.478 13.82 0.00 45.01 2.57
2466 4689 2.358267 CAGTTGTCTAGCCGGTAGGTAG 59.642 54.545 1.90 0.00 46.12 3.18
2774 4997 4.392940 AGGAAGTCAAATCCTGAACTGTG 58.607 43.478 0.00 0.00 45.60 3.66
2791 5014 7.341030 TGAACTGTGCTAGTACTACTATGGTA 58.659 38.462 12.42 0.00 39.18 3.25
2792 5015 7.498239 TGAACTGTGCTAGTACTACTATGGTAG 59.502 40.741 14.21 14.21 43.66 3.18
2793 5016 5.764192 ACTGTGCTAGTACTACTATGGTAGC 59.236 44.000 15.57 4.43 39.55 3.58
2883 5119 5.723295 ACTTTGCAACAGTTTGATGTTTCT 58.277 33.333 0.00 0.00 41.41 2.52
2913 5149 4.575645 TCAGTTTACCACAAAACCTTACGG 59.424 41.667 0.00 0.00 39.66 4.02
3010 5249 1.078637 GACTGGGTTAAGCGGGTCC 60.079 63.158 13.89 0.00 0.00 4.46
3155 5394 1.065854 CCGAGCCACTCCTCATTTTCT 60.066 52.381 0.00 0.00 0.00 2.52
3325 5564 0.034756 CACTGGTGTTCCATGTCGGA 59.965 55.000 0.00 0.00 43.43 4.55
3418 5657 5.761726 TCTGTGGCTATCTTTCATTATGCTG 59.238 40.000 0.00 0.00 0.00 4.41
3439 5678 3.054508 TGGCATCCTATGTGATGTTGTCA 60.055 43.478 7.77 0.00 43.28 3.58
3452 5691 4.452114 TGATGTTGTCAACGAGATTCAAGG 59.548 41.667 11.03 0.00 32.78 3.61
3514 5753 2.124695 CCCGGCCTCAAGTTAGCC 60.125 66.667 0.00 1.51 43.53 3.93
3555 5794 4.261572 GGTGTGGTTAGTACACTTACGACA 60.262 45.833 10.88 10.88 45.82 4.35
3571 5810 2.138320 CGACAATCCCAGATCCATTCG 58.862 52.381 0.00 0.00 0.00 3.34
3576 5815 2.988010 TCCCAGATCCATTCGTTGAG 57.012 50.000 0.00 0.00 0.00 3.02
3707 5947 7.041916 CCAGATTCTCAAATGAGCACTTCTATC 60.042 40.741 5.53 1.36 41.80 2.08
3794 6034 5.973565 GTCCATAAAATGCTAACATCAGTGC 59.026 40.000 0.00 0.00 34.62 4.40
3926 6166 1.613437 ACCCTTGAGGATTTTGCAACG 59.387 47.619 0.00 0.00 39.89 4.10
3930 6170 3.983344 CCTTGAGGATTTTGCAACGAAAG 59.017 43.478 0.00 0.00 37.39 2.62
4315 6560 2.969821 TTGGCAGTAACCTGTGGATT 57.030 45.000 0.00 0.00 41.02 3.01
4601 6852 0.250295 CGGTCTCCTTTGCCAGAACA 60.250 55.000 0.00 0.00 0.00 3.18
4646 6897 3.568007 CCGAACAAAGTGGGAAAGATTGA 59.432 43.478 0.00 0.00 0.00 2.57
4661 6912 2.032030 AGATTGAAACTGGCGACAAACG 60.032 45.455 0.00 0.00 42.06 3.60
4793 7044 2.098117 GCAACATACCCTGAACATGCTC 59.902 50.000 0.00 0.00 0.00 4.26
4794 7045 3.346315 CAACATACCCTGAACATGCTCA 58.654 45.455 0.00 0.00 0.00 4.26
4812 7063 3.119101 GCTCAGGTGTAGCTAGTAGCAAA 60.119 47.826 23.77 8.91 45.56 3.68
4965 7216 9.979578 AGAAATATGTTTGTTTGCTAACATTGA 57.020 25.926 14.40 2.25 44.40 2.57
4995 7246 3.861840 TCACATTGCTGACTAACTAGCC 58.138 45.455 0.00 0.00 39.15 3.93
5066 7318 5.419471 ACTCTGATACCAAACTAGACAGGTC 59.581 44.000 0.00 0.00 35.62 3.85
5143 7395 6.360370 GGAGCAGATCCCATATAACTAACA 57.640 41.667 0.00 0.00 43.01 2.41
5173 7425 4.536090 TCCAGAACCAACAGGATCAACTAT 59.464 41.667 0.00 0.00 0.00 2.12
5211 7463 2.675056 GCGACACCAGCTTGAGCAG 61.675 63.158 5.70 0.00 45.16 4.24
5225 7477 2.912771 TGAGCAGACTTTTCGGTGAAA 58.087 42.857 0.00 0.00 0.00 2.69
5258 7514 0.179161 CGTCTTCGATGCGTCTTCCT 60.179 55.000 4.05 0.00 39.71 3.36
5560 7818 5.318630 AGGATTTGCTGAAAATGGCAATTT 58.681 33.333 0.00 0.00 45.82 1.82
5561 7819 5.182380 AGGATTTGCTGAAAATGGCAATTTG 59.818 36.000 5.05 0.00 45.82 2.32
5562 7820 5.181622 GGATTTGCTGAAAATGGCAATTTGA 59.818 36.000 5.05 0.00 45.82 2.69
5663 7921 6.808321 AAATATGGACCAGCTAGTAACAGA 57.192 37.500 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.682471 GCAATACTGATAGCACCAGTACTGT 60.682 44.000 21.18 7.09 46.18 3.55
1 2 4.747108 GCAATACTGATAGCACCAGTACTG 59.253 45.833 16.34 16.34 46.18 2.74
2 3 4.499865 CGCAATACTGATAGCACCAGTACT 60.500 45.833 12.83 0.00 46.18 2.73
3 4 3.736252 CGCAATACTGATAGCACCAGTAC 59.264 47.826 12.83 0.00 46.18 2.73
5 6 2.826428 CGCAATACTGATAGCACCAGT 58.174 47.619 9.90 9.90 45.75 4.00
6 7 1.528586 GCGCAATACTGATAGCACCAG 59.471 52.381 0.30 0.00 37.64 4.00
7 8 1.581934 GCGCAATACTGATAGCACCA 58.418 50.000 0.30 0.00 0.00 4.17
8 9 0.508641 CGCGCAATACTGATAGCACC 59.491 55.000 8.75 0.00 0.00 5.01
9 10 1.071239 CACGCGCAATACTGATAGCAC 60.071 52.381 5.73 0.00 0.00 4.40
10 11 1.202359 TCACGCGCAATACTGATAGCA 60.202 47.619 5.73 0.00 0.00 3.49
11 12 1.190323 GTCACGCGCAATACTGATAGC 59.810 52.381 5.73 0.00 0.00 2.97
12 13 1.787155 GGTCACGCGCAATACTGATAG 59.213 52.381 5.73 0.00 0.00 2.08
13 14 1.537348 GGGTCACGCGCAATACTGATA 60.537 52.381 5.73 0.00 0.00 2.15
14 15 0.810031 GGGTCACGCGCAATACTGAT 60.810 55.000 5.73 0.00 0.00 2.90
15 16 1.447140 GGGTCACGCGCAATACTGA 60.447 57.895 5.73 0.00 0.00 3.41
16 17 2.798501 CGGGTCACGCGCAATACTG 61.799 63.158 5.73 0.00 34.82 2.74
17 18 2.508439 CGGGTCACGCGCAATACT 60.508 61.111 5.73 0.00 34.82 2.12
18 19 3.560278 CCGGGTCACGCGCAATAC 61.560 66.667 9.11 0.66 42.52 1.89
19 20 4.071875 ACCGGGTCACGCGCAATA 62.072 61.111 9.11 0.00 42.52 1.90
25 26 4.980805 TGCTTCACCGGGTCACGC 62.981 66.667 6.32 0.00 42.52 5.34
26 27 2.047274 ATGCTTCACCGGGTCACG 60.047 61.111 6.32 0.00 43.80 4.35
27 28 1.003839 TCATGCTTCACCGGGTCAC 60.004 57.895 6.32 0.00 0.00 3.67
28 29 1.296392 CTCATGCTTCACCGGGTCA 59.704 57.895 6.32 0.00 0.00 4.02
29 30 2.109126 GCTCATGCTTCACCGGGTC 61.109 63.158 6.32 0.00 36.03 4.46
30 31 2.045926 GCTCATGCTTCACCGGGT 60.046 61.111 6.32 0.00 36.03 5.28
50 51 0.908910 TCCACACCGATATGCTTGGT 59.091 50.000 0.00 0.00 43.01 3.67
51 52 1.875514 CATCCACACCGATATGCTTGG 59.124 52.381 0.00 0.00 0.00 3.61
52 53 1.265095 GCATCCACACCGATATGCTTG 59.735 52.381 0.00 0.00 41.16 4.01
53 54 1.597742 GCATCCACACCGATATGCTT 58.402 50.000 0.00 0.00 41.16 3.91
54 55 0.250467 GGCATCCACACCGATATGCT 60.250 55.000 0.00 0.00 43.33 3.79
55 56 1.237285 GGGCATCCACACCGATATGC 61.237 60.000 0.00 0.00 43.13 3.14
56 57 0.108396 TGGGCATCCACACCGATATG 59.892 55.000 0.00 0.00 38.32 1.78
57 58 2.538790 TGGGCATCCACACCGATAT 58.461 52.632 0.00 0.00 38.32 1.63
58 59 4.058434 TGGGCATCCACACCGATA 57.942 55.556 0.00 0.00 38.32 2.92
73 74 2.353839 GCAGCACGCACAAAGTGG 60.354 61.111 0.00 0.00 41.79 4.00
74 75 1.656263 CAGCAGCACGCACAAAGTG 60.656 57.895 0.00 0.00 46.13 3.16
75 76 2.114670 ACAGCAGCACGCACAAAGT 61.115 52.632 0.00 0.00 46.13 2.66
76 77 1.656263 CACAGCAGCACGCACAAAG 60.656 57.895 0.00 0.00 46.13 2.77
77 78 2.408428 CACAGCAGCACGCACAAA 59.592 55.556 0.00 0.00 46.13 2.83
78 79 4.254672 GCACAGCAGCACGCACAA 62.255 61.111 0.00 0.00 46.13 3.33
88 89 0.248565 GAGTCTGATCCTGCACAGCA 59.751 55.000 0.00 0.00 36.92 4.41
89 90 0.536260 AGAGTCTGATCCTGCACAGC 59.464 55.000 0.00 0.00 34.57 4.40
90 91 1.202279 CGAGAGTCTGATCCTGCACAG 60.202 57.143 0.00 0.00 35.72 3.66
91 92 0.813821 CGAGAGTCTGATCCTGCACA 59.186 55.000 0.00 0.00 0.00 4.57
92 93 0.527385 GCGAGAGTCTGATCCTGCAC 60.527 60.000 0.00 0.00 0.00 4.57
93 94 0.682532 AGCGAGAGTCTGATCCTGCA 60.683 55.000 0.00 0.00 0.00 4.41
94 95 0.030638 GAGCGAGAGTCTGATCCTGC 59.969 60.000 0.00 0.00 0.00 4.85
95 96 1.679139 AGAGCGAGAGTCTGATCCTG 58.321 55.000 0.00 0.00 0.00 3.86
96 97 2.297701 GAAGAGCGAGAGTCTGATCCT 58.702 52.381 0.00 0.00 0.00 3.24
97 98 2.020720 TGAAGAGCGAGAGTCTGATCC 58.979 52.381 0.00 0.00 0.00 3.36
98 99 2.682856 AGTGAAGAGCGAGAGTCTGATC 59.317 50.000 0.00 0.00 0.00 2.92
99 100 2.722094 AGTGAAGAGCGAGAGTCTGAT 58.278 47.619 0.00 0.00 0.00 2.90
100 101 2.192664 AGTGAAGAGCGAGAGTCTGA 57.807 50.000 0.00 0.00 0.00 3.27
101 102 3.376859 ACATAGTGAAGAGCGAGAGTCTG 59.623 47.826 0.00 0.00 0.00 3.51
102 103 3.376859 CACATAGTGAAGAGCGAGAGTCT 59.623 47.826 0.00 0.00 35.23 3.24
103 104 3.690422 CACATAGTGAAGAGCGAGAGTC 58.310 50.000 0.00 0.00 35.23 3.36
104 105 2.159310 GCACATAGTGAAGAGCGAGAGT 60.159 50.000 0.58 0.00 35.23 3.24
105 106 2.458951 GCACATAGTGAAGAGCGAGAG 58.541 52.381 0.58 0.00 35.23 3.20
106 107 1.135139 GGCACATAGTGAAGAGCGAGA 59.865 52.381 0.58 0.00 35.23 4.04
107 108 1.565305 GGCACATAGTGAAGAGCGAG 58.435 55.000 0.58 0.00 35.23 5.03
108 109 0.175760 GGGCACATAGTGAAGAGCGA 59.824 55.000 0.58 0.00 35.23 4.93
109 110 0.176680 AGGGCACATAGTGAAGAGCG 59.823 55.000 0.58 0.00 35.23 5.03
110 111 1.484240 AGAGGGCACATAGTGAAGAGC 59.516 52.381 0.58 0.00 35.23 4.09
111 112 4.404073 ACTTAGAGGGCACATAGTGAAGAG 59.596 45.833 0.58 0.00 35.23 2.85
112 113 4.353777 ACTTAGAGGGCACATAGTGAAGA 58.646 43.478 0.58 0.00 35.23 2.87
113 114 4.744795 ACTTAGAGGGCACATAGTGAAG 57.255 45.455 0.58 0.00 35.23 3.02
114 115 6.808321 ATAACTTAGAGGGCACATAGTGAA 57.192 37.500 0.58 0.00 35.23 3.18
115 116 7.067421 ACTATAACTTAGAGGGCACATAGTGA 58.933 38.462 0.58 0.00 35.23 3.41
116 117 7.291411 ACTATAACTTAGAGGGCACATAGTG 57.709 40.000 0.00 0.00 36.51 2.74
117 118 7.202011 CCAACTATAACTTAGAGGGCACATAGT 60.202 40.741 0.00 0.00 31.13 2.12
118 119 7.155328 CCAACTATAACTTAGAGGGCACATAG 58.845 42.308 0.00 0.00 0.00 2.23
119 120 6.463897 GCCAACTATAACTTAGAGGGCACATA 60.464 42.308 0.00 0.00 37.30 2.29
120 121 5.687706 GCCAACTATAACTTAGAGGGCACAT 60.688 44.000 0.00 0.00 37.30 3.21
121 122 4.383770 GCCAACTATAACTTAGAGGGCACA 60.384 45.833 0.00 0.00 37.30 4.57
122 123 4.127907 GCCAACTATAACTTAGAGGGCAC 58.872 47.826 0.00 0.00 37.30 5.01
123 124 4.037927 AGCCAACTATAACTTAGAGGGCA 58.962 43.478 15.94 0.00 38.64 5.36
124 125 4.101119 TCAGCCAACTATAACTTAGAGGGC 59.899 45.833 0.00 0.00 37.47 5.19
125 126 5.364157 AGTCAGCCAACTATAACTTAGAGGG 59.636 44.000 0.00 0.00 0.00 4.30
126 127 6.472686 AGTCAGCCAACTATAACTTAGAGG 57.527 41.667 0.00 0.00 0.00 3.69
127 128 7.777095 AGAAGTCAGCCAACTATAACTTAGAG 58.223 38.462 0.00 0.00 0.00 2.43
128 129 7.719871 AGAAGTCAGCCAACTATAACTTAGA 57.280 36.000 0.00 0.00 0.00 2.10
129 130 8.035394 TGAAGAAGTCAGCCAACTATAACTTAG 58.965 37.037 0.00 0.00 0.00 2.18
130 131 7.817962 GTGAAGAAGTCAGCCAACTATAACTTA 59.182 37.037 0.00 0.00 36.74 2.24
131 132 6.651225 GTGAAGAAGTCAGCCAACTATAACTT 59.349 38.462 0.00 0.00 36.74 2.66
132 133 6.166982 GTGAAGAAGTCAGCCAACTATAACT 58.833 40.000 0.00 0.00 36.74 2.24
133 134 5.062308 CGTGAAGAAGTCAGCCAACTATAAC 59.938 44.000 0.00 0.00 36.74 1.89
134 135 5.047590 TCGTGAAGAAGTCAGCCAACTATAA 60.048 40.000 0.00 0.00 36.74 0.98
135 136 4.461431 TCGTGAAGAAGTCAGCCAACTATA 59.539 41.667 0.00 0.00 36.74 1.31
136 137 3.258372 TCGTGAAGAAGTCAGCCAACTAT 59.742 43.478 0.00 0.00 36.74 2.12
137 138 2.626266 TCGTGAAGAAGTCAGCCAACTA 59.374 45.455 0.00 0.00 36.74 2.24
138 139 1.412710 TCGTGAAGAAGTCAGCCAACT 59.587 47.619 0.00 0.00 36.74 3.16
139 140 1.865865 TCGTGAAGAAGTCAGCCAAC 58.134 50.000 0.00 0.00 36.74 3.77
140 141 2.613026 TTCGTGAAGAAGTCAGCCAA 57.387 45.000 0.00 0.00 36.74 4.52
149 150 1.412710 AGTCTGTGCCTTCGTGAAGAA 59.587 47.619 11.11 0.00 40.79 2.52
150 151 1.000163 GAGTCTGTGCCTTCGTGAAGA 60.000 52.381 11.11 0.00 40.79 2.87
151 152 1.423395 GAGTCTGTGCCTTCGTGAAG 58.577 55.000 2.57 2.57 38.14 3.02
152 153 0.318699 CGAGTCTGTGCCTTCGTGAA 60.319 55.000 0.00 0.00 0.00 3.18
153 154 1.170290 TCGAGTCTGTGCCTTCGTGA 61.170 55.000 0.00 0.00 34.83 4.35
154 155 0.730834 CTCGAGTCTGTGCCTTCGTG 60.731 60.000 3.62 0.00 34.83 4.35
155 156 1.581954 CTCGAGTCTGTGCCTTCGT 59.418 57.895 3.62 0.00 34.83 3.85
156 157 1.803519 GCTCGAGTCTGTGCCTTCG 60.804 63.158 15.13 0.00 34.56 3.79
157 158 1.803519 CGCTCGAGTCTGTGCCTTC 60.804 63.158 15.13 0.00 0.00 3.46
158 159 2.259818 CGCTCGAGTCTGTGCCTT 59.740 61.111 15.13 0.00 0.00 4.35
159 160 4.427661 GCGCTCGAGTCTGTGCCT 62.428 66.667 15.13 0.00 34.05 4.75
160 161 4.724602 TGCGCTCGAGTCTGTGCC 62.725 66.667 15.13 0.00 38.75 5.01
161 162 3.177920 CTGCGCTCGAGTCTGTGC 61.178 66.667 15.13 7.66 39.80 4.57
162 163 3.177920 GCTGCGCTCGAGTCTGTG 61.178 66.667 15.13 2.50 0.00 3.66
163 164 2.999485 ATGCTGCGCTCGAGTCTGT 61.999 57.895 15.13 0.00 0.00 3.41
164 165 2.202716 ATGCTGCGCTCGAGTCTG 60.203 61.111 15.13 11.10 0.00 3.51
165 166 2.202716 CATGCTGCGCTCGAGTCT 60.203 61.111 15.13 0.00 0.00 3.24
166 167 2.967929 ATCCATGCTGCGCTCGAGTC 62.968 60.000 15.13 7.08 0.00 3.36
167 168 2.584261 AATCCATGCTGCGCTCGAGT 62.584 55.000 15.13 0.00 0.00 4.18
168 169 1.434622 AAATCCATGCTGCGCTCGAG 61.435 55.000 9.73 8.45 0.00 4.04
169 170 1.026182 AAAATCCATGCTGCGCTCGA 61.026 50.000 9.73 0.00 0.00 4.04
170 171 0.179156 AAAAATCCATGCTGCGCTCG 60.179 50.000 9.73 0.00 0.00 5.03
171 172 1.553308 GAAAAATCCATGCTGCGCTC 58.447 50.000 9.73 0.28 0.00 5.03
172 173 0.174162 GGAAAAATCCATGCTGCGCT 59.826 50.000 9.73 0.00 0.00 5.92
173 174 0.174162 AGGAAAAATCCATGCTGCGC 59.826 50.000 0.00 0.00 0.00 6.09
174 175 1.747355 AGAGGAAAAATCCATGCTGCG 59.253 47.619 0.00 0.00 0.00 5.18
175 176 2.100418 GGAGAGGAAAAATCCATGCTGC 59.900 50.000 0.00 0.00 33.08 5.25
176 177 3.359033 TGGAGAGGAAAAATCCATGCTG 58.641 45.455 0.00 0.00 38.19 4.41
177 178 3.744940 TGGAGAGGAAAAATCCATGCT 57.255 42.857 0.00 0.00 38.19 3.79
178 179 4.221482 AGTTTGGAGAGGAAAAATCCATGC 59.779 41.667 0.00 0.00 42.53 4.06
179 180 5.392380 CGAGTTTGGAGAGGAAAAATCCATG 60.392 44.000 0.00 0.00 42.53 3.66
180 181 4.702131 CGAGTTTGGAGAGGAAAAATCCAT 59.298 41.667 0.00 0.00 42.53 3.41
181 182 4.072131 CGAGTTTGGAGAGGAAAAATCCA 58.928 43.478 0.00 0.00 41.33 3.41
182 183 3.440522 CCGAGTTTGGAGAGGAAAAATCC 59.559 47.826 0.00 0.00 29.01 3.01
183 184 4.072839 ACCGAGTTTGGAGAGGAAAAATC 58.927 43.478 0.00 0.00 0.00 2.17
184 185 3.821033 CACCGAGTTTGGAGAGGAAAAAT 59.179 43.478 0.00 0.00 0.00 1.82
185 186 3.211045 CACCGAGTTTGGAGAGGAAAAA 58.789 45.455 0.00 0.00 0.00 1.94
186 187 2.171870 ACACCGAGTTTGGAGAGGAAAA 59.828 45.455 0.00 0.00 0.00 2.29
187 188 1.766496 ACACCGAGTTTGGAGAGGAAA 59.234 47.619 0.00 0.00 0.00 3.13
188 189 1.420430 ACACCGAGTTTGGAGAGGAA 58.580 50.000 0.00 0.00 0.00 3.36
189 190 1.070134 CAACACCGAGTTTGGAGAGGA 59.930 52.381 0.00 0.00 38.74 3.71
190 191 1.202651 ACAACACCGAGTTTGGAGAGG 60.203 52.381 0.00 0.00 38.74 3.69
191 192 2.240493 ACAACACCGAGTTTGGAGAG 57.760 50.000 0.00 0.00 38.74 3.20
192 193 2.093394 TCAACAACACCGAGTTTGGAGA 60.093 45.455 0.00 0.00 38.74 3.71
193 194 2.285083 TCAACAACACCGAGTTTGGAG 58.715 47.619 0.00 0.00 38.74 3.86
194 195 2.404923 TCAACAACACCGAGTTTGGA 57.595 45.000 0.00 0.00 38.74 3.53
195 196 2.031157 GGATCAACAACACCGAGTTTGG 60.031 50.000 0.00 0.00 38.74 3.28
196 197 2.616376 TGGATCAACAACACCGAGTTTG 59.384 45.455 0.00 0.00 38.74 2.93
197 198 2.616842 GTGGATCAACAACACCGAGTTT 59.383 45.455 0.00 0.00 38.74 2.66
198 199 2.218603 GTGGATCAACAACACCGAGTT 58.781 47.619 0.00 0.00 42.42 3.01
199 200 1.542547 GGTGGATCAACAACACCGAGT 60.543 52.381 1.86 0.00 44.41 4.18
200 201 1.156736 GGTGGATCAACAACACCGAG 58.843 55.000 1.86 0.00 44.41 4.63
201 202 3.315765 GGTGGATCAACAACACCGA 57.684 52.632 1.86 0.00 44.41 4.69
204 205 3.149196 ACTCATGGTGGATCAACAACAC 58.851 45.455 1.86 0.00 41.53 3.32
205 206 3.507162 ACTCATGGTGGATCAACAACA 57.493 42.857 1.86 0.00 43.14 3.33
206 207 4.278170 TCAAACTCATGGTGGATCAACAAC 59.722 41.667 1.86 0.00 33.61 3.32
207 208 4.468713 TCAAACTCATGGTGGATCAACAA 58.531 39.130 1.86 0.00 33.61 2.83
208 209 4.074259 CTCAAACTCATGGTGGATCAACA 58.926 43.478 1.86 0.00 34.75 3.33
209 210 3.441572 CCTCAAACTCATGGTGGATCAAC 59.558 47.826 0.00 0.00 0.00 3.18
210 211 3.561960 CCCTCAAACTCATGGTGGATCAA 60.562 47.826 0.00 0.00 0.00 2.57
211 212 2.025981 CCCTCAAACTCATGGTGGATCA 60.026 50.000 0.00 0.00 0.00 2.92
212 213 2.648059 CCCTCAAACTCATGGTGGATC 58.352 52.381 0.00 0.00 0.00 3.36
213 214 1.285962 CCCCTCAAACTCATGGTGGAT 59.714 52.381 0.00 0.00 0.00 3.41
214 215 0.698238 CCCCTCAAACTCATGGTGGA 59.302 55.000 0.00 0.00 0.00 4.02
215 216 0.323725 CCCCCTCAAACTCATGGTGG 60.324 60.000 0.00 0.00 0.00 4.61
216 217 3.271250 CCCCCTCAAACTCATGGTG 57.729 57.895 0.00 0.00 0.00 4.17
232 233 5.129815 TGAACTATACACATCTAACACCCCC 59.870 44.000 0.00 0.00 0.00 5.40
233 234 6.229936 TGAACTATACACATCTAACACCCC 57.770 41.667 0.00 0.00 0.00 4.95
234 235 7.769044 ACAATGAACTATACACATCTAACACCC 59.231 37.037 0.00 0.00 0.00 4.61
235 236 8.718102 ACAATGAACTATACACATCTAACACC 57.282 34.615 0.00 0.00 0.00 4.16
243 244 9.944376 GGGATGTATACAATGAACTATACACAT 57.056 33.333 10.14 0.00 38.21 3.21
244 245 8.372459 GGGGATGTATACAATGAACTATACACA 58.628 37.037 10.14 0.00 38.21 3.72
245 246 8.372459 TGGGGATGTATACAATGAACTATACAC 58.628 37.037 10.14 0.00 38.21 2.90
246 247 8.499288 TGGGGATGTATACAATGAACTATACA 57.501 34.615 10.14 5.16 39.19 2.29
247 248 9.601217 GATGGGGATGTATACAATGAACTATAC 57.399 37.037 10.14 0.00 0.00 1.47
248 249 9.332713 TGATGGGGATGTATACAATGAACTATA 57.667 33.333 10.14 0.00 0.00 1.31
249 250 8.218423 TGATGGGGATGTATACAATGAACTAT 57.782 34.615 10.14 2.78 0.00 2.12
250 251 7.625498 TGATGGGGATGTATACAATGAACTA 57.375 36.000 10.14 0.00 0.00 2.24
251 252 6.514012 TGATGGGGATGTATACAATGAACT 57.486 37.500 10.14 0.00 0.00 3.01
255 256 9.565090 CCTTATATGATGGGGATGTATACAATG 57.435 37.037 10.14 0.00 0.00 2.82
256 257 8.727149 CCCTTATATGATGGGGATGTATACAAT 58.273 37.037 10.14 0.00 41.25 2.71
257 258 8.101309 CCCTTATATGATGGGGATGTATACAA 57.899 38.462 10.14 0.00 41.25 2.41
258 259 7.690454 CCCTTATATGATGGGGATGTATACA 57.310 40.000 8.27 8.27 41.25 2.29
268 269 4.768968 CAGAAAAGCCCCTTATATGATGGG 59.231 45.833 3.71 3.71 41.47 4.00
269 270 4.219288 GCAGAAAAGCCCCTTATATGATGG 59.781 45.833 0.00 0.00 0.00 3.51
270 271 4.828939 TGCAGAAAAGCCCCTTATATGATG 59.171 41.667 0.00 0.00 0.00 3.07
271 272 5.065613 TGCAGAAAAGCCCCTTATATGAT 57.934 39.130 0.00 0.00 0.00 2.45
272 273 4.518278 TGCAGAAAAGCCCCTTATATGA 57.482 40.909 0.00 0.00 0.00 2.15
273 274 5.796424 AATGCAGAAAAGCCCCTTATATG 57.204 39.130 0.00 0.00 0.00 1.78
274 275 6.585416 CAAAATGCAGAAAAGCCCCTTATAT 58.415 36.000 0.00 0.00 0.00 0.86
275 276 5.626578 GCAAAATGCAGAAAAGCCCCTTATA 60.627 40.000 0.00 0.00 44.26 0.98
276 277 4.835678 CAAAATGCAGAAAAGCCCCTTAT 58.164 39.130 0.00 0.00 0.00 1.73
277 278 3.556843 GCAAAATGCAGAAAAGCCCCTTA 60.557 43.478 0.00 0.00 44.26 2.69
278 279 2.811504 GCAAAATGCAGAAAAGCCCCTT 60.812 45.455 0.00 0.00 44.26 3.95
279 280 1.271001 GCAAAATGCAGAAAAGCCCCT 60.271 47.619 0.00 0.00 44.26 4.79
280 281 1.159285 GCAAAATGCAGAAAAGCCCC 58.841 50.000 0.00 0.00 44.26 5.80
291 292 4.142182 ACATATACAGGTGTGGCAAAATGC 60.142 41.667 0.00 0.00 44.08 3.56
292 293 5.581126 ACATATACAGGTGTGGCAAAATG 57.419 39.130 0.00 0.00 0.00 2.32
293 294 6.318648 CAGTACATATACAGGTGTGGCAAAAT 59.681 38.462 0.00 0.00 33.30 1.82
294 295 5.645929 CAGTACATATACAGGTGTGGCAAAA 59.354 40.000 0.00 0.00 33.30 2.44
295 296 5.182487 CAGTACATATACAGGTGTGGCAAA 58.818 41.667 0.00 0.00 33.30 3.68
296 297 4.383661 CCAGTACATATACAGGTGTGGCAA 60.384 45.833 0.00 0.00 34.12 4.52
297 298 3.133901 CCAGTACATATACAGGTGTGGCA 59.866 47.826 0.00 0.00 34.12 4.92
298 299 3.728845 CCAGTACATATACAGGTGTGGC 58.271 50.000 0.00 0.00 34.12 5.01
299 300 3.494398 GGCCAGTACATATACAGGTGTGG 60.494 52.174 0.00 0.00 39.58 4.17
300 301 3.388024 AGGCCAGTACATATACAGGTGTG 59.612 47.826 5.01 0.00 39.58 3.82
301 302 3.654273 AGGCCAGTACATATACAGGTGT 58.346 45.455 5.01 0.00 39.58 4.16
302 303 4.689612 AAGGCCAGTACATATACAGGTG 57.310 45.455 5.01 0.00 39.58 4.00
303 304 4.141482 CCAAAGGCCAGTACATATACAGGT 60.141 45.833 5.01 0.00 39.58 4.00
304 305 4.389374 CCAAAGGCCAGTACATATACAGG 58.611 47.826 5.01 0.00 40.21 4.00
305 306 3.815401 GCCAAAGGCCAGTACATATACAG 59.185 47.826 5.01 0.00 44.06 2.74
306 307 3.815809 GCCAAAGGCCAGTACATATACA 58.184 45.455 5.01 0.00 44.06 2.29
321 322 4.389374 TGAACCTTTACTGAGAGCCAAAG 58.611 43.478 0.00 0.00 0.00 2.77
322 323 4.141482 ACTGAACCTTTACTGAGAGCCAAA 60.141 41.667 0.00 0.00 0.00 3.28
323 324 3.391296 ACTGAACCTTTACTGAGAGCCAA 59.609 43.478 0.00 0.00 0.00 4.52
324 325 2.972713 ACTGAACCTTTACTGAGAGCCA 59.027 45.455 0.00 0.00 0.00 4.75
325 326 3.686916 ACTGAACCTTTACTGAGAGCC 57.313 47.619 0.00 0.00 0.00 4.70
326 327 3.187432 GCAACTGAACCTTTACTGAGAGC 59.813 47.826 0.00 0.00 0.00 4.09
327 328 4.450419 CAGCAACTGAACCTTTACTGAGAG 59.550 45.833 0.00 0.00 32.44 3.20
328 329 4.141711 ACAGCAACTGAACCTTTACTGAGA 60.142 41.667 0.78 0.00 35.18 3.27
329 330 4.130118 ACAGCAACTGAACCTTTACTGAG 58.870 43.478 0.78 0.00 35.18 3.35
330 331 4.150897 ACAGCAACTGAACCTTTACTGA 57.849 40.909 0.78 0.00 35.18 3.41
331 332 4.900635 AACAGCAACTGAACCTTTACTG 57.099 40.909 0.78 0.00 35.18 2.74
332 333 6.206829 GGATAAACAGCAACTGAACCTTTACT 59.793 38.462 0.78 0.00 35.18 2.24
333 334 6.016610 TGGATAAACAGCAACTGAACCTTTAC 60.017 38.462 0.78 0.00 35.18 2.01
334 335 6.065374 TGGATAAACAGCAACTGAACCTTTA 58.935 36.000 0.78 0.00 35.18 1.85
335 336 4.892934 TGGATAAACAGCAACTGAACCTTT 59.107 37.500 0.78 0.00 35.18 3.11
336 337 4.469657 TGGATAAACAGCAACTGAACCTT 58.530 39.130 0.78 0.00 35.18 3.50
337 338 4.098914 TGGATAAACAGCAACTGAACCT 57.901 40.909 0.78 0.00 35.18 3.50
338 339 4.037446 TGTTGGATAAACAGCAACTGAACC 59.963 41.667 0.78 0.00 43.96 3.62
339 340 5.181690 TGTTGGATAAACAGCAACTGAAC 57.818 39.130 0.78 0.00 43.96 3.18
349 350 4.390603 GTGATGTACGCTGTTGGATAAACA 59.609 41.667 0.00 0.00 46.66 2.83
350 351 4.390603 TGTGATGTACGCTGTTGGATAAAC 59.609 41.667 0.00 0.00 39.41 2.01
351 352 4.570930 TGTGATGTACGCTGTTGGATAAA 58.429 39.130 0.00 0.00 0.00 1.40
352 353 4.195225 TGTGATGTACGCTGTTGGATAA 57.805 40.909 0.00 0.00 0.00 1.75
353 354 3.878160 TGTGATGTACGCTGTTGGATA 57.122 42.857 0.00 0.00 0.00 2.59
354 355 2.760634 TGTGATGTACGCTGTTGGAT 57.239 45.000 0.00 0.00 0.00 3.41
355 356 2.535012 TTGTGATGTACGCTGTTGGA 57.465 45.000 0.00 0.00 0.00 3.53
356 357 2.741517 TCATTGTGATGTACGCTGTTGG 59.258 45.455 0.00 0.00 34.77 3.77
357 358 4.336932 CATCATTGTGATGTACGCTGTTG 58.663 43.478 10.92 0.00 46.80 3.33
358 359 4.604843 CATCATTGTGATGTACGCTGTT 57.395 40.909 10.92 0.00 46.80 3.16
426 427 5.486526 TCTGTGATTGGTTTTGCACTTTTT 58.513 33.333 0.00 0.00 32.69 1.94
427 428 5.083533 TCTGTGATTGGTTTTGCACTTTT 57.916 34.783 0.00 0.00 32.69 2.27
428 429 4.685924 CTCTGTGATTGGTTTTGCACTTT 58.314 39.130 0.00 0.00 32.69 2.66
486 487 2.093783 GCAATTCCAACGAGTTAGGACG 59.906 50.000 0.00 0.00 0.00 4.79
511 512 7.062605 GCCGCAAAATTAGAATCATCAATATGG 59.937 37.037 0.00 0.00 33.61 2.74
514 515 7.036996 TGCCGCAAAATTAGAATCATCAATA 57.963 32.000 0.00 0.00 0.00 1.90
554 555 9.448438 TTCAAAATCAGGAATTCGATTCTAGAA 57.552 29.630 7.82 7.82 39.24 2.10
583 584 6.916360 TTGGCTCTCAAAAATTGGTTCTAT 57.084 33.333 0.00 0.00 31.46 1.98
597 598 2.098614 TGCAACTTGTTTTGGCTCTCA 58.901 42.857 0.00 0.00 0.00 3.27
598 599 2.869233 TGCAACTTGTTTTGGCTCTC 57.131 45.000 0.00 0.00 0.00 3.20
613 614 6.978080 GTGAACCTAATTTTCAGAACTTGCAA 59.022 34.615 0.00 0.00 33.63 4.08
647 650 4.495844 CGTGTCCACTTGAACCTTTCTTTC 60.496 45.833 0.00 0.00 0.00 2.62
651 654 1.602377 CCGTGTCCACTTGAACCTTTC 59.398 52.381 0.00 0.00 0.00 2.62
696 702 5.493133 TGTAACATGGCCATCGATTTTAC 57.507 39.130 17.61 16.94 0.00 2.01
736 742 3.564053 AAGAAGACCCACGTTGGTTAA 57.436 42.857 13.28 0.00 39.24 2.01
737 743 3.564053 AAAGAAGACCCACGTTGGTTA 57.436 42.857 13.28 0.00 39.24 2.85
796 817 6.586844 CAGCTACTTACTTTCAGTGGTAGAAC 59.413 42.308 16.31 6.09 37.70 3.01
798 819 5.336531 GCAGCTACTTACTTTCAGTGGTAGA 60.337 44.000 16.31 0.00 37.70 2.59
799 820 4.865365 GCAGCTACTTACTTTCAGTGGTAG 59.135 45.833 11.36 11.36 38.09 3.18
801 822 3.665190 GCAGCTACTTACTTTCAGTGGT 58.335 45.455 0.00 0.00 0.00 4.16
865 928 3.877450 GGCAGGGGCGATGATGGA 61.877 66.667 0.00 0.00 42.47 3.41
866 929 4.193893 TGGCAGGGGCGATGATGG 62.194 66.667 0.00 0.00 42.47 3.51
867 930 2.903855 GTGGCAGGGGCGATGATG 60.904 66.667 0.00 0.00 42.47 3.07
868 931 3.092511 AGTGGCAGGGGCGATGAT 61.093 61.111 0.00 0.00 42.47 2.45
869 932 4.100084 CAGTGGCAGGGGCGATGA 62.100 66.667 0.00 0.00 42.47 2.92
925 3023 2.669569 GGTCAAGCAAGCGCAGGA 60.670 61.111 11.47 0.00 42.27 3.86
965 3064 1.466558 GGCTTCTTACTTGTGCTCTGC 59.533 52.381 0.00 0.00 0.00 4.26
977 3076 2.106566 CCTCTCTCTGCAGGCTTCTTA 58.893 52.381 15.13 0.00 0.00 2.10
980 3079 0.975040 TCCCTCTCTCTGCAGGCTTC 60.975 60.000 15.13 0.00 0.00 3.86
1307 3406 9.678260 AAGGATGAGGCAAAATATATGATAGAC 57.322 33.333 0.00 0.00 0.00 2.59
1359 3458 3.637065 GAGAAGCCTCCTTCCCCTA 57.363 57.895 0.17 0.00 46.97 3.53
1371 3470 1.963515 GAGATGAGGAGGAGGAGAAGC 59.036 57.143 0.00 0.00 0.00 3.86
1373 3472 1.133637 CGGAGATGAGGAGGAGGAGAA 60.134 57.143 0.00 0.00 0.00 2.87
1374 3473 0.476338 CGGAGATGAGGAGGAGGAGA 59.524 60.000 0.00 0.00 0.00 3.71
1377 3476 2.206536 GCCGGAGATGAGGAGGAGG 61.207 68.421 5.05 0.00 0.00 4.30
1394 3493 4.899239 CATCTCCGGGCAGGTCGC 62.899 72.222 0.00 0.00 41.99 5.19
1395 3494 4.899239 GCATCTCCGGGCAGGTCG 62.899 72.222 0.00 0.00 41.99 4.79
1396 3495 3.453070 GAGCATCTCCGGGCAGGTC 62.453 68.421 0.00 0.81 41.99 3.85
1397 3496 3.474570 GAGCATCTCCGGGCAGGT 61.475 66.667 0.00 0.00 41.99 4.00
1405 3504 8.288964 CGAAGACGTTTTTACAGAGCATCTCC 62.289 46.154 0.00 0.00 37.92 3.71
1406 3505 5.443431 CGAAGACGTTTTTACAGAGCATCTC 60.443 44.000 0.00 0.00 37.92 2.75
1407 3506 4.386049 CGAAGACGTTTTTACAGAGCATCT 59.614 41.667 0.00 0.00 39.74 2.90
1408 3507 4.629065 CGAAGACGTTTTTACAGAGCATC 58.371 43.478 0.00 0.00 34.56 3.91
1409 3508 4.647291 CGAAGACGTTTTTACAGAGCAT 57.353 40.909 0.00 0.00 34.56 3.79
1423 3522 3.165124 GCTAAAGAGACAGACGAAGACG 58.835 50.000 0.00 0.00 45.75 4.18
1424 3523 3.503891 GGCTAAAGAGACAGACGAAGAC 58.496 50.000 0.00 0.00 0.00 3.01
1425 3524 2.161808 CGGCTAAAGAGACAGACGAAGA 59.838 50.000 0.00 0.00 46.43 2.87
1426 3525 2.095161 ACGGCTAAAGAGACAGACGAAG 60.095 50.000 3.50 0.00 46.43 3.79
1427 3526 1.884579 ACGGCTAAAGAGACAGACGAA 59.115 47.619 3.50 0.00 46.43 3.85
1428 3527 1.467734 GACGGCTAAAGAGACAGACGA 59.532 52.381 3.50 0.00 46.43 4.20
1430 3529 1.135053 GGGACGGCTAAAGAGACAGAC 60.135 57.143 0.00 0.00 0.00 3.51
1437 3536 0.976073 CAGGGAGGGACGGCTAAAGA 60.976 60.000 0.00 0.00 0.00 2.52
1442 3541 1.762460 CATACAGGGAGGGACGGCT 60.762 63.158 0.00 0.00 0.00 5.52
1533 3632 5.776744 CAAAGGAGACCAAAGAAAAGATGG 58.223 41.667 0.00 0.00 40.16 3.51
1534 3633 5.225642 GCAAAGGAGACCAAAGAAAAGATG 58.774 41.667 0.00 0.00 0.00 2.90
1543 3642 2.673775 TGATGGCAAAGGAGACCAAA 57.326 45.000 0.00 0.00 36.94 3.28
1547 3646 3.614092 TGAAGATGATGGCAAAGGAGAC 58.386 45.455 0.00 0.00 0.00 3.36
1548 3647 4.305539 TTGAAGATGATGGCAAAGGAGA 57.694 40.909 0.00 0.00 0.00 3.71
1550 3649 6.363167 AAAATTGAAGATGATGGCAAAGGA 57.637 33.333 0.00 0.00 0.00 3.36
1562 3661 5.539955 AGTGGTGGCAGTAAAAATTGAAGAT 59.460 36.000 0.00 0.00 0.00 2.40
1646 3769 7.648142 GTCTTGGAGACAGATCTAAGTGATAG 58.352 42.308 0.00 0.00 44.45 2.08
1779 3909 6.731467 ACATGTCAAGGACCTAACCAAATAT 58.269 36.000 0.00 0.00 0.00 1.28
1899 4112 5.337554 GTGAAAAAGCCTCAAGTAAACGTT 58.662 37.500 0.00 0.00 0.00 3.99
1928 4141 4.243270 GGCTATGATTCCGTATACACCAC 58.757 47.826 3.32 0.00 0.00 4.16
1938 4151 1.948834 TGTGCAATGGCTATGATTCCG 59.051 47.619 0.00 0.00 41.91 4.30
2105 4318 5.475220 TGTCTAGACAAGTCCTCTCTTTGAG 59.525 44.000 23.24 0.00 39.26 3.02
2163 4376 2.230660 GTGCCAGCATAATAGGGGTTC 58.769 52.381 0.00 0.00 0.00 3.62
2190 4412 1.007580 GTAAGGACTAAAGCGGCAGC 58.992 55.000 0.00 0.00 45.58 5.25
2194 4416 6.920569 ATAAATGTGTAAGGACTAAAGCGG 57.079 37.500 0.00 0.00 0.00 5.52
2342 4565 3.485394 TGCTGCACTTCCATGTTTTCTA 58.515 40.909 0.00 0.00 0.00 2.10
2345 4568 2.309613 TCTGCTGCACTTCCATGTTTT 58.690 42.857 0.00 0.00 0.00 2.43
2352 4575 3.508762 CATGAATTTCTGCTGCACTTCC 58.491 45.455 0.00 0.00 0.00 3.46
2523 4746 3.569701 CCAACACTATCTTTGCAACCACT 59.430 43.478 0.00 0.00 0.00 4.00
2791 5014 1.162698 CAGCAACATACTGCACTGCT 58.837 50.000 1.98 0.00 45.18 4.24
2792 5015 0.877071 ACAGCAACATACTGCACTGC 59.123 50.000 0.00 0.00 45.18 4.40
2793 5016 4.952262 ATTACAGCAACATACTGCACTG 57.048 40.909 0.00 0.00 45.18 3.66
2883 5119 5.771165 GGTTTTGTGGTAAACTGAAGGGATA 59.229 40.000 0.00 0.00 37.96 2.59
2913 5149 6.969473 GGTTTCTCTACTAAAATCTGCATTGC 59.031 38.462 0.46 0.46 0.00 3.56
3155 5394 2.429930 CTCGGGGTCTTGGTGCAA 59.570 61.111 0.00 0.00 0.00 4.08
3325 5564 0.751643 GCACGGAGGCATGGGTAATT 60.752 55.000 0.00 0.00 0.00 1.40
3418 5657 3.544684 TGACAACATCACATAGGATGCC 58.455 45.455 3.23 0.00 46.81 4.40
3439 5678 2.234908 CCAGGTCTCCTTGAATCTCGTT 59.765 50.000 0.00 0.00 0.00 3.85
3514 5753 1.019673 CCATCATTGCAGAGGGAACG 58.980 55.000 0.53 0.00 41.86 3.95
3555 5794 3.813443 CTCAACGAATGGATCTGGGATT 58.187 45.455 0.00 0.00 0.00 3.01
3571 5810 4.870991 GGGATATATTAAGAGGCGCTCAAC 59.129 45.833 7.64 0.00 32.06 3.18
3576 5815 5.986135 CAGTATGGGATATATTAAGAGGCGC 59.014 44.000 0.00 0.00 0.00 6.53
3707 5947 5.991328 AAGATAGTTACCACATCGCAATG 57.009 39.130 0.00 0.00 38.93 2.82
3794 6034 1.229975 TGCACTGTCAGGTTGCATCG 61.230 55.000 12.75 0.00 0.00 3.84
4064 6309 1.524165 GAGTAGGGAGAGCGCGAGA 60.524 63.158 12.10 0.00 0.00 4.04
4315 6560 4.506095 GCCTCTTGAAACCCCTACAAGTTA 60.506 45.833 0.00 0.00 40.89 2.24
4601 6852 1.336887 CGTGATGAACAGGAGAACGGT 60.337 52.381 0.00 0.00 36.62 4.83
4646 6897 1.658686 TTGCCGTTTGTCGCCAGTTT 61.659 50.000 0.00 0.00 38.35 2.66
4661 6912 0.107165 ATAAGGTCGCCCTCTTTGCC 60.107 55.000 0.00 0.00 41.56 4.52
4716 6967 4.792068 TCAAACTTCCAGTTCCATGTTCT 58.208 39.130 0.00 0.00 37.47 3.01
4793 7044 5.302059 TCCTATTTGCTACTAGCTACACCTG 59.698 44.000 9.49 0.00 42.97 4.00
4794 7045 5.455872 TCCTATTTGCTACTAGCTACACCT 58.544 41.667 9.49 0.00 42.97 4.00
4812 7063 7.340232 TGCAACATTTTATTCAGCTCTTCCTAT 59.660 33.333 0.00 0.00 0.00 2.57
4965 7216 9.236006 AGTTAGTCAGCAATGTGATATTTTCTT 57.764 29.630 0.00 0.00 0.00 2.52
5046 7298 5.084519 AGTGACCTGTCTAGTTTGGTATCA 58.915 41.667 0.00 0.00 32.30 2.15
5066 7318 9.141400 GTTGTTTCTCTTAGTGATAGGTAAGTG 57.859 37.037 0.00 0.00 0.00 3.16
5143 7395 0.468226 TGTTGGTTCTGGAAGCGAGT 59.532 50.000 7.80 0.00 41.36 4.18
5173 7425 0.034089 TGGAGAGATCTCAGCCGTCA 60.034 55.000 24.39 9.84 44.60 4.35
5211 7463 3.375922 TCCTGTTGTTTCACCGAAAAGTC 59.624 43.478 0.00 0.00 33.14 3.01
5225 7477 3.056821 TCGAAGACGATTGATCCTGTTGT 60.057 43.478 0.00 0.00 43.81 3.32
5272 7528 1.353103 GAGCGGACGGATGCAATTG 59.647 57.895 0.00 0.00 0.00 2.32
5560 7818 2.421952 GGCTAGAACATTCCTGGCATCA 60.422 50.000 0.00 0.00 39.49 3.07
5561 7819 2.225467 GGCTAGAACATTCCTGGCATC 58.775 52.381 0.00 0.00 39.49 3.91
5562 7820 1.565759 TGGCTAGAACATTCCTGGCAT 59.434 47.619 0.00 0.00 39.49 4.40
5643 7901 7.067421 ACTATTCTGTTACTAGCTGGTCCATA 58.933 38.462 5.78 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.