Multiple sequence alignment - TraesCS2B01G280400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G280400 chr2B 100.000 9619 0 0 1 9619 387068637 387078255 0.000000e+00 17764.0
1 TraesCS2B01G280400 chr2B 82.215 298 41 11 2968 3257 98742332 98742625 7.460000e-61 246.0
2 TraesCS2B01G280400 chr2B 94.949 99 5 0 7545 7643 387076279 387076181 1.290000e-33 156.0
3 TraesCS2B01G280400 chr2B 84.211 76 8 1 1459 1530 161359454 161359379 4.820000e-08 71.3
4 TraesCS2B01G280400 chr2A 95.013 2607 71 20 734 3324 412516530 412513967 0.000000e+00 4039.0
5 TraesCS2B01G280400 chr2A 96.448 1999 56 5 7633 9619 412512611 412510616 0.000000e+00 3284.0
6 TraesCS2B01G280400 chr2A 87.150 2109 261 8 4051 6153 240860618 240858514 0.000000e+00 2385.0
7 TraesCS2B01G280400 chr2A 96.847 888 25 2 6204 7090 412513915 412513030 0.000000e+00 1482.0
8 TraesCS2B01G280400 chr2A 87.598 766 72 11 1 752 412517327 412516571 0.000000e+00 867.0
9 TraesCS2B01G280400 chr2A 94.988 419 20 1 7136 7554 412513029 412512612 0.000000e+00 656.0
10 TraesCS2B01G280400 chr2A 94.118 102 6 0 7294 7395 728602664 728602563 1.290000e-33 156.0
11 TraesCS2B01G280400 chr2A 89.565 115 10 2 7545 7659 102692067 102692179 2.800000e-30 145.0
12 TraesCS2B01G280400 chr2A 84.211 76 8 1 1459 1530 113898929 113898854 4.820000e-08 71.3
13 TraesCS2B01G280400 chr2D 89.297 2747 276 11 3456 6202 337924986 337927714 0.000000e+00 3428.0
14 TraesCS2B01G280400 chr2D 88.922 2645 284 4 3453 6092 544172445 544175085 0.000000e+00 3253.0
15 TraesCS2B01G280400 chr2D 96.076 1937 53 9 7693 9619 318553471 318555394 0.000000e+00 3134.0
16 TraesCS2B01G280400 chr2D 95.271 1882 69 15 734 2605 318546418 318548289 0.000000e+00 2964.0
17 TraesCS2B01G280400 chr2D 89.228 1606 165 6 4587 6187 222652459 222650857 0.000000e+00 2001.0
18 TraesCS2B01G280400 chr2D 96.396 888 28 3 6204 7088 318551816 318552702 0.000000e+00 1459.0
19 TraesCS2B01G280400 chr2D 95.765 614 20 6 2693 3304 318548286 318548895 0.000000e+00 985.0
20 TraesCS2B01G280400 chr2D 87.549 763 75 11 1 752 318545653 318546406 0.000000e+00 865.0
21 TraesCS2B01G280400 chr2D 81.574 521 73 15 2943 3448 63392047 63391535 8.990000e-110 409.0
22 TraesCS2B01G280400 chr2D 95.928 221 6 1 7136 7356 318552705 318552922 1.190000e-93 355.0
23 TraesCS2B01G280400 chr2D 96.059 203 7 1 7352 7554 318553232 318553433 7.200000e-86 329.0
24 TraesCS2B01G280400 chr2D 81.633 294 37 12 2957 3240 63534999 63535285 2.700000e-55 228.0
25 TraesCS2B01G280400 chr2D 96.875 96 1 2 7545 7639 622355881 622355975 1.000000e-34 159.0
26 TraesCS2B01G280400 chr2D 91.964 112 7 2 7544 7653 53145820 53145709 1.290000e-33 156.0
27 TraesCS2B01G280400 chr2D 92.381 105 6 2 7533 7636 15683003 15682900 2.160000e-31 148.0
28 TraesCS2B01G280400 chr3B 84.794 2749 390 13 3462 6202 396027425 396030153 0.000000e+00 2736.0
29 TraesCS2B01G280400 chr3B 82.857 2765 450 17 3446 6196 143177026 143179780 0.000000e+00 2459.0
30 TraesCS2B01G280400 chr3B 96.078 51 2 0 7077 7127 181342503 181342553 6.190000e-12 84.2
31 TraesCS2B01G280400 chr7A 83.903 2752 414 20 3468 6202 229282631 229279892 0.000000e+00 2601.0
32 TraesCS2B01G280400 chr7A 93.204 103 7 0 7290 7392 510625412 510625310 1.670000e-32 152.0
33 TraesCS2B01G280400 chr7A 97.917 48 1 0 7080 7127 639594942 639594989 6.190000e-12 84.2
34 TraesCS2B01G280400 chr4B 83.660 2754 433 10 3455 6202 133282980 133285722 0.000000e+00 2577.0
35 TraesCS2B01G280400 chr4B 85.280 2269 322 9 3455 5716 184333493 184331230 0.000000e+00 2329.0
36 TraesCS2B01G280400 chr4B 92.381 105 6 2 2615 2719 511163706 511163808 2.160000e-31 148.0
37 TraesCS2B01G280400 chr4D 84.047 2313 352 12 3901 6202 481390732 481388426 0.000000e+00 2211.0
38 TraesCS2B01G280400 chr4D 93.333 105 7 0 7295 7399 481201297 481201193 1.290000e-33 156.0
39 TraesCS2B01G280400 chr4D 91.589 107 9 0 7284 7390 13094720 13094826 2.160000e-31 148.0
40 TraesCS2B01G280400 chr4D 92.453 106 5 2 2615 2719 414999559 414999662 2.160000e-31 148.0
41 TraesCS2B01G280400 chr4D 75.248 303 46 15 3101 3398 129516090 129516368 6.100000e-22 117.0
42 TraesCS2B01G280400 chr6A 89.032 155 14 2 7812 7965 613277339 613277187 1.280000e-43 189.0
43 TraesCS2B01G280400 chr6A 94.444 54 3 0 7086 7139 39190730 39190783 6.190000e-12 84.2
44 TraesCS2B01G280400 chr6A 80.220 91 13 3 2490 2576 29758256 29758345 8.060000e-06 63.9
45 TraesCS2B01G280400 chr7D 95.238 105 5 0 7542 7646 519264536 519264640 5.980000e-37 167.0
46 TraesCS2B01G280400 chr7D 96.774 93 3 0 7552 7644 141292088 141292180 1.290000e-33 156.0
47 TraesCS2B01G280400 chr7D 91.892 111 8 1 7545 7654 141292179 141292069 4.650000e-33 154.0
48 TraesCS2B01G280400 chr7D 75.549 319 47 16 3087 3398 202029339 202029633 2.820000e-25 128.0
49 TraesCS2B01G280400 chr5D 96.939 98 3 0 7295 7392 415615113 415615016 2.150000e-36 165.0
50 TraesCS2B01G280400 chr5D 93.000 100 5 2 2618 2717 481427202 481427105 2.800000e-30 145.0
51 TraesCS2B01G280400 chr5D 75.549 319 47 16 3087 3398 445094429 445094135 2.820000e-25 128.0
52 TraesCS2B01G280400 chr5D 74.172 302 50 14 3101 3398 326749269 326748992 6.150000e-17 100.0
53 TraesCS2B01G280400 chr5D 73.510 302 52 14 3101 3398 324745483 324745760 1.330000e-13 89.8
54 TraesCS2B01G280400 chr4A 94.118 102 5 1 7295 7395 594133289 594133390 4.650000e-33 154.0
55 TraesCS2B01G280400 chrUn 91.589 107 9 0 7293 7399 331949582 331949688 2.160000e-31 148.0
56 TraesCS2B01G280400 chr7B 91.589 107 7 1 2614 2720 632337771 632337875 7.780000e-31 147.0
57 TraesCS2B01G280400 chr7B 91.589 107 6 2 2617 2722 162120811 162120915 2.800000e-30 145.0
58 TraesCS2B01G280400 chr6D 93.069 101 5 1 2616 2716 363032632 363032534 7.780000e-31 147.0
59 TraesCS2B01G280400 chr6D 75.549 319 47 16 3087 3398 104065047 104065341 2.820000e-25 128.0
60 TraesCS2B01G280400 chr6D 91.379 58 3 2 7086 7142 448686798 448686742 2.880000e-10 78.7
61 TraesCS2B01G280400 chr3A 92.233 103 6 1 2617 2719 470095779 470095679 2.800000e-30 145.0
62 TraesCS2B01G280400 chr3A 84.211 76 8 1 1459 1530 493706438 493706513 4.820000e-08 71.3
63 TraesCS2B01G280400 chr1D 90.351 114 5 5 7552 7665 476449451 476449344 2.800000e-30 145.0
64 TraesCS2B01G280400 chr1D 75.706 177 32 8 3101 3276 485938610 485938776 2.880000e-10 78.7
65 TraesCS2B01G280400 chr5B 91.509 106 6 2 2618 2722 166379182 166379079 1.010000e-29 143.0
66 TraesCS2B01G280400 chr1A 100.000 46 0 0 7082 7127 560378108 560378153 1.720000e-12 86.1
67 TraesCS2B01G280400 chr1A 93.478 46 3 0 1494 1539 30498004 30497959 1.730000e-07 69.4
68 TraesCS2B01G280400 chr3D 96.000 50 2 0 7078 7127 157440567 157440616 2.230000e-11 82.4
69 TraesCS2B01G280400 chr3D 96.000 50 2 0 7078 7127 499895645 499895694 2.230000e-11 82.4
70 TraesCS2B01G280400 chr6B 91.379 58 3 1 7084 7139 708594478 708594535 2.880000e-10 78.7
71 TraesCS2B01G280400 chr1B 91.525 59 2 2 7088 7143 366402565 366402507 2.880000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G280400 chr2B 387068637 387078255 9618 False 17764.000000 17764 100.000000 1 9619 1 chr2B.!!$F2 9618
1 TraesCS2B01G280400 chr2A 240858514 240860618 2104 True 2385.000000 2385 87.150000 4051 6153 1 chr2A.!!$R2 2102
2 TraesCS2B01G280400 chr2A 412510616 412517327 6711 True 2065.600000 4039 94.178800 1 9619 5 chr2A.!!$R4 9618
3 TraesCS2B01G280400 chr2D 337924986 337927714 2728 False 3428.000000 3428 89.297000 3456 6202 1 chr2D.!!$F2 2746
4 TraesCS2B01G280400 chr2D 544172445 544175085 2640 False 3253.000000 3253 88.922000 3453 6092 1 chr2D.!!$F3 2639
5 TraesCS2B01G280400 chr2D 222650857 222652459 1602 True 2001.000000 2001 89.228000 4587 6187 1 chr2D.!!$R4 1600
6 TraesCS2B01G280400 chr2D 318545653 318555394 9741 False 1441.571429 3134 94.720571 1 9619 7 chr2D.!!$F5 9618
7 TraesCS2B01G280400 chr2D 63391535 63392047 512 True 409.000000 409 81.574000 2943 3448 1 chr2D.!!$R3 505
8 TraesCS2B01G280400 chr3B 396027425 396030153 2728 False 2736.000000 2736 84.794000 3462 6202 1 chr3B.!!$F3 2740
9 TraesCS2B01G280400 chr3B 143177026 143179780 2754 False 2459.000000 2459 82.857000 3446 6196 1 chr3B.!!$F1 2750
10 TraesCS2B01G280400 chr7A 229279892 229282631 2739 True 2601.000000 2601 83.903000 3468 6202 1 chr7A.!!$R1 2734
11 TraesCS2B01G280400 chr4B 133282980 133285722 2742 False 2577.000000 2577 83.660000 3455 6202 1 chr4B.!!$F1 2747
12 TraesCS2B01G280400 chr4B 184331230 184333493 2263 True 2329.000000 2329 85.280000 3455 5716 1 chr4B.!!$R1 2261
13 TraesCS2B01G280400 chr4D 481388426 481390732 2306 True 2211.000000 2211 84.047000 3901 6202 1 chr4D.!!$R2 2301

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
712 729 0.033366 ATTTGGCCTGGTTCGCAAAC 59.967 50.0 3.32 0.0 34.46 2.93 F
1726 1808 0.037697 TGATACCATACCGCCGATGC 60.038 55.0 0.00 0.0 0.00 3.91 F
2420 2506 0.591170 CAACGGTTTCACGGAATGCT 59.409 50.0 0.00 0.0 38.39 3.79 F
3906 6862 0.254178 AGTGCGATGCCAAATCTCCT 59.746 50.0 0.00 0.0 0.00 3.69 F
4463 7421 0.107703 TGGATGCACGGAAGATGTCC 60.108 55.0 0.00 0.0 43.90 4.02 F
4464 7422 0.179000 GGATGCACGGAAGATGTCCT 59.821 55.0 0.00 0.0 45.36 3.85 F
6150 9142 0.464373 CGAGGCCAAGGTATGCACAT 60.464 55.0 5.01 0.0 0.00 3.21 F
7103 10099 0.338814 AACTACTCCCTCCGTCCCAT 59.661 55.0 0.00 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2676 2764 1.668419 AAGTGTCGCAGCTTTGAACT 58.332 45.0 0.00 0.0 0.00 3.01 R
3713 6664 0.530744 ACGCTTGCATCTTCGACCTA 59.469 50.0 0.00 0.0 0.00 3.08 R
4005 6961 0.670546 CGTTGTTGGACGGCTGAGAT 60.671 55.0 0.00 0.0 39.27 2.75 R
5209 8192 0.179056 CGACCCTATTTCGCCCATGT 60.179 55.0 0.00 0.0 0.00 3.21 R
6012 9004 0.033366 GCCGGCAGAAAAACCACATT 59.967 50.0 24.80 0.0 0.00 2.71 R
6456 9451 1.112113 TGAAGATCGACCAGTAGGGC 58.888 55.0 0.00 0.0 42.05 5.19 R
7116 10112 0.181587 TCCCTCCGCAGTGTCAAAAA 59.818 50.0 0.00 0.0 0.00 1.94 R
8676 11991 0.179161 CGTCTTCGATGCGTCTTCCT 60.179 55.0 4.05 0.0 39.71 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 0.472471 AAGAGTTGCCCTCCGAACAA 59.528 50.000 0.00 0.00 41.47 2.83
27 28 0.106419 TTGCCCTCCGAACAACCTTT 60.106 50.000 0.00 0.00 0.00 3.11
36 37 4.710324 TCCGAACAACCTTTATGTGTTCT 58.290 39.130 12.42 0.00 37.36 3.01
37 38 4.513692 TCCGAACAACCTTTATGTGTTCTG 59.486 41.667 12.42 7.32 37.36 3.02
38 39 4.320202 CCGAACAACCTTTATGTGTTCTGG 60.320 45.833 12.42 11.17 37.36 3.86
55 56 3.552875 TCTGGATCTACAAGGAGGTACG 58.447 50.000 0.00 0.00 0.00 3.67
81 82 4.563630 TCGTTGACGATCGGTTGG 57.436 55.556 20.98 4.64 44.22 3.77
99 100 4.156008 GGTTGGCAATGATTATCCGATACC 59.844 45.833 1.92 0.00 0.00 2.73
105 106 6.128007 GGCAATGATTATCCGATACCGATTTT 60.128 38.462 0.00 0.00 38.22 1.82
153 154 3.340034 TCACGAACCATAATCCCAACAC 58.660 45.455 0.00 0.00 0.00 3.32
156 157 2.356741 CGAACCATAATCCCAACACCCT 60.357 50.000 0.00 0.00 0.00 4.34
199 200 0.904649 TCCGATGACAATGGAGTGCT 59.095 50.000 0.00 0.00 0.00 4.40
201 202 0.926155 CGATGACAATGGAGTGCTCG 59.074 55.000 0.00 0.00 0.00 5.03
226 227 1.856597 CGAATTGACGTCGGTAATCCC 59.143 52.381 11.62 1.19 34.85 3.85
265 266 3.167414 GGCAACACCCCTACACCT 58.833 61.111 0.00 0.00 0.00 4.00
273 274 1.482593 CACCCCTACACCTGATCACTC 59.517 57.143 0.00 0.00 0.00 3.51
274 275 1.362932 ACCCCTACACCTGATCACTCT 59.637 52.381 0.00 0.00 0.00 3.24
310 311 5.437289 TTGTCCGCATGAAATTGGATATC 57.563 39.130 0.00 0.00 31.60 1.63
311 312 4.459330 TGTCCGCATGAAATTGGATATCA 58.541 39.130 4.83 0.00 31.60 2.15
312 313 4.886489 TGTCCGCATGAAATTGGATATCAA 59.114 37.500 4.83 0.00 40.01 2.57
315 316 6.418819 GTCCGCATGAAATTGGATATCAAAAG 59.581 38.462 4.83 0.00 39.05 2.27
367 380 1.267574 GCTGGGGTGGAGAGTCATGA 61.268 60.000 0.00 0.00 0.00 3.07
374 387 2.437281 GGTGGAGAGTCATGATGGTGAT 59.563 50.000 0.00 0.00 0.00 3.06
381 394 4.588106 AGAGTCATGATGGTGATAGTGGAG 59.412 45.833 0.00 0.00 0.00 3.86
399 412 2.954318 GGAGGTGGTAGCGTAGATGTTA 59.046 50.000 0.00 0.00 0.00 2.41
401 414 4.321082 GGAGGTGGTAGCGTAGATGTTATC 60.321 50.000 0.00 0.00 0.00 1.75
405 418 2.593257 GTAGCGTAGATGTTATCGGCC 58.407 52.381 0.00 0.00 0.00 6.13
442 455 1.254284 CGAGGGCAGAAGGAGTCAGT 61.254 60.000 0.00 0.00 0.00 3.41
450 463 2.685388 CAGAAGGAGTCAGTAGCGATGA 59.315 50.000 0.00 0.00 0.00 2.92
465 478 3.646946 GCGATGAAGCTGACATAGATGA 58.353 45.455 14.79 0.00 0.00 2.92
497 510 6.098838 AGCCAACATCTTTCTTTTCCTTTTCT 59.901 34.615 0.00 0.00 0.00 2.52
499 512 6.201615 CCAACATCTTTCTTTTCCTTTTCTGC 59.798 38.462 0.00 0.00 0.00 4.26
500 513 5.847304 ACATCTTTCTTTTCCTTTTCTGCC 58.153 37.500 0.00 0.00 0.00 4.85
508 521 4.568152 TTTCCTTTTCTGCCTTTCTTCG 57.432 40.909 0.00 0.00 0.00 3.79
700 717 6.949449 TGTTTAAATTCACGAAAATTTGGCC 58.051 32.000 17.03 0.00 38.82 5.36
702 719 6.777526 TTAAATTCACGAAAATTTGGCCTG 57.222 33.333 3.32 0.00 38.82 4.85
712 729 0.033366 ATTTGGCCTGGTTCGCAAAC 59.967 50.000 3.32 0.00 34.46 2.93
721 738 1.226435 GTTCGCAAACGCACCACAA 60.226 52.632 0.00 0.00 39.84 3.33
737 754 2.978010 AAGGGACGCGCCACAAAG 60.978 61.111 18.87 0.00 38.95 2.77
752 769 5.122239 CGCCACAAAGAAGAAACATCAGATA 59.878 40.000 0.00 0.00 0.00 1.98
753 770 6.549952 GCCACAAAGAAGAAACATCAGATAG 58.450 40.000 0.00 0.00 0.00 2.08
754 771 6.372659 GCCACAAAGAAGAAACATCAGATAGA 59.627 38.462 0.00 0.00 0.00 1.98
834 910 1.664873 CAACAATTGGCCCGCTTCA 59.335 52.632 10.83 0.00 0.00 3.02
838 914 0.247185 CAATTGGCCCGCTTCACAAT 59.753 50.000 0.00 0.00 35.24 2.71
839 915 0.975887 AATTGGCCCGCTTCACAATT 59.024 45.000 0.00 0.00 38.35 2.32
840 916 0.247185 ATTGGCCCGCTTCACAATTG 59.753 50.000 3.24 3.24 29.89 2.32
862 940 4.353437 GCGTTGTCGGTCCGGTCT 62.353 66.667 12.29 0.00 37.56 3.85
903 981 3.246880 GGTGTCCACCCTTCCCGT 61.247 66.667 5.08 0.00 45.68 5.28
1034 1114 7.956328 AAGGTTGGTACTTTTCTTTTTCTCT 57.044 32.000 0.00 0.00 0.00 3.10
1147 1227 0.453390 GGTTGTACTACGACCCGGAG 59.547 60.000 13.16 0.00 45.13 4.63
1536 1616 1.672356 GCACGCCATGGTTCAGACT 60.672 57.895 14.67 0.00 0.00 3.24
1539 1619 1.450312 CGCCATGGTTCAGACTCCC 60.450 63.158 14.67 0.00 0.00 4.30
1722 1804 2.519377 TTCTTGATACCATACCGCCG 57.481 50.000 0.00 0.00 0.00 6.46
1723 1805 1.694844 TCTTGATACCATACCGCCGA 58.305 50.000 0.00 0.00 0.00 5.54
1726 1808 0.037697 TGATACCATACCGCCGATGC 60.038 55.000 0.00 0.00 0.00 3.91
1745 1827 3.599343 TGCGTTCTCTGCTCAAACATAT 58.401 40.909 0.00 0.00 0.00 1.78
1779 1861 7.869429 GCTAACAAGCTATGCAATAATGGATTT 59.131 33.333 0.00 0.00 38.66 2.17
1780 1862 9.754382 CTAACAAGCTATGCAATAATGGATTTT 57.246 29.630 0.00 0.00 38.66 1.82
1781 1863 8.428186 AACAAGCTATGCAATAATGGATTTTG 57.572 30.769 0.00 0.00 38.66 2.44
1782 1864 7.784037 ACAAGCTATGCAATAATGGATTTTGA 58.216 30.769 0.00 0.00 38.66 2.69
1783 1865 8.259411 ACAAGCTATGCAATAATGGATTTTGAA 58.741 29.630 0.00 0.00 38.66 2.69
1843 1925 8.744568 ATTTCTCTTTTCTTGAAGACAGAACT 57.255 30.769 0.00 0.00 32.50 3.01
1867 1952 9.203421 ACTTGCATGGCTTTATAAGTTTAAAAC 57.797 29.630 4.44 0.00 0.00 2.43
2420 2506 0.591170 CAACGGTTTCACGGAATGCT 59.409 50.000 0.00 0.00 38.39 3.79
2425 2511 1.133025 GGTTTCACGGAATGCTCATGG 59.867 52.381 0.00 0.00 0.00 3.66
2435 2521 4.261072 CGGAATGCTCATGGAAGAATTGAG 60.261 45.833 0.00 0.00 39.87 3.02
2632 2720 5.187186 GCTATTTAATACTCCCTCCGATCCA 59.813 44.000 0.00 0.00 0.00 3.41
2633 2721 6.295688 GCTATTTAATACTCCCTCCGATCCAA 60.296 42.308 0.00 0.00 0.00 3.53
2660 2748 1.068588 AGTGTCGCAGCTGTGAACTAA 59.931 47.619 30.43 14.25 36.19 2.24
2661 2749 1.457303 GTGTCGCAGCTGTGAACTAAG 59.543 52.381 30.43 5.10 36.19 2.18
2662 2750 1.071605 GTCGCAGCTGTGAACTAAGG 58.928 55.000 30.43 2.05 36.19 2.69
2663 2751 0.679505 TCGCAGCTGTGAACTAAGGT 59.320 50.000 27.12 0.00 0.00 3.50
2665 2753 2.297880 TCGCAGCTGTGAACTAAGGTTA 59.702 45.455 27.12 0.37 35.58 2.85
2666 2754 2.668457 CGCAGCTGTGAACTAAGGTTAG 59.332 50.000 22.94 0.00 35.58 2.34
2667 2755 3.665190 GCAGCTGTGAACTAAGGTTAGT 58.335 45.455 16.64 0.00 45.43 2.24
2729 2817 6.939163 TCGGAGGGAGTAGTAATAACACTATC 59.061 42.308 0.00 0.00 33.71 2.08
2735 2823 9.747293 GGGAGTAGTAATAACACTATCAAGTTC 57.253 37.037 0.00 0.00 33.71 3.01
2749 2837 2.481568 TCAAGTTCGCTGCATTCAGAAG 59.518 45.455 0.00 0.00 42.95 2.85
2801 2889 9.228949 ACATGGCAAGATCATTCTATAAGAATC 57.771 33.333 0.00 0.00 42.67 2.52
2891 2980 6.297080 TCCCACCATAACTTTGTTATACGA 57.703 37.500 3.09 0.00 0.00 3.43
2903 2992 9.825972 AACTTTGTTATACGAGTTCATTGAATG 57.174 29.630 1.78 0.00 0.00 2.67
3010 3101 8.050778 TGCAAGTTGTCTATTTTATACAAGGG 57.949 34.615 4.48 0.00 34.01 3.95
3064 3157 1.066071 GTAGGCAGTGGAGGAACTTCC 60.066 57.143 0.00 0.00 41.55 3.46
3310 6258 3.895041 TGTGTATTGTCAGGAGAGTCACA 59.105 43.478 0.00 0.00 0.00 3.58
3327 6276 7.433680 AGAGTCACAAAAACTTTTTGTCAGTT 58.566 30.769 23.83 13.18 40.30 3.16
3340 6289 3.162202 TGTCAGTTTTTGGTGCATGTG 57.838 42.857 0.00 0.00 0.00 3.21
3341 6290 1.860326 GTCAGTTTTTGGTGCATGTGC 59.140 47.619 0.00 0.00 42.50 4.57
3363 6312 2.810439 TTTGCCTTGCACATACCAAC 57.190 45.000 0.00 0.00 38.71 3.77
3415 6364 7.012704 TGCCAATTTGTCTTCTATGAATAGCTC 59.987 37.037 0.00 0.00 0.00 4.09
3450 6400 8.481314 CCTCATGCCTCTATTTGCTATATAGAA 58.519 37.037 14.16 0.00 34.97 2.10
3507 6457 6.183360 GCGTATCATTGCATTGATAGGTAGAC 60.183 42.308 31.48 21.29 42.39 2.59
3518 6468 8.144478 GCATTGATAGGTAGACAGAATACAAGA 58.856 37.037 0.00 0.00 0.00 3.02
3543 6493 1.004511 AGGACACCTAGCTCGTACACT 59.995 52.381 0.00 0.00 28.47 3.55
3584 6534 1.980765 TCATGAGCAGAAGAAGTGGGT 59.019 47.619 0.00 0.00 0.00 4.51
3605 6556 1.972198 CTCGGCCCAGTTACAGTGA 59.028 57.895 0.00 0.00 0.00 3.41
3652 6603 3.884774 TCCTTTGGCACCGGCAGT 61.885 61.111 0.00 0.00 43.71 4.40
3713 6664 2.982130 CTAGCAGAGGGTTGCCGT 59.018 61.111 0.00 0.00 45.18 5.68
3785 6736 2.284699 ACTAGGGACGCAAGGGCT 60.285 61.111 0.00 0.00 46.39 5.19
3797 6748 3.607370 AAGGGCTTTCCGGAGCGAC 62.607 63.158 3.34 1.06 43.62 5.19
3800 6751 3.119096 GCTTTCCGGAGCGACACC 61.119 66.667 3.34 0.00 32.23 4.16
3810 6761 3.771160 GCGACACCGGGATGGAGT 61.771 66.667 6.32 0.00 45.03 3.85
3811 6762 2.978824 CGACACCGGGATGGAGTT 59.021 61.111 6.32 0.00 42.12 3.01
3840 6791 0.989602 TCTCCACCAGTCGTAGAGGA 59.010 55.000 0.00 0.00 36.95 3.71
3906 6862 0.254178 AGTGCGATGCCAAATCTCCT 59.746 50.000 0.00 0.00 0.00 3.69
3949 6905 0.987294 AGGTGGTGGATGTCCTCAAG 59.013 55.000 0.09 0.00 36.82 3.02
3972 6928 5.190528 AGGTCTTGATCACATAGGACACAAT 59.809 40.000 0.00 0.00 0.00 2.71
4005 6961 2.486548 GCCAATCCCCGCTTGACTAATA 60.487 50.000 0.00 0.00 0.00 0.98
4010 6966 3.572642 TCCCCGCTTGACTAATATCTCA 58.427 45.455 0.00 0.00 0.00 3.27
4025 6981 1.594293 CTCAGCCGTCCAACAACGT 60.594 57.895 0.00 0.00 41.01 3.99
4139 7095 3.369892 GGAAGAGAGCCATGTAGCAAGAA 60.370 47.826 0.00 0.00 34.23 2.52
4193 7149 2.579201 CGAATGCGGTCTGGGTCT 59.421 61.111 0.00 0.00 0.00 3.85
4250 7206 5.459505 AGGTAGATATACTCAACAGTGGCT 58.540 41.667 0.00 0.00 33.62 4.75
4421 7379 0.178068 TCCAGAATCGGCAGGTAAGC 59.822 55.000 0.00 0.00 0.00 3.09
4463 7421 0.107703 TGGATGCACGGAAGATGTCC 60.108 55.000 0.00 0.00 43.90 4.02
4464 7422 0.179000 GGATGCACGGAAGATGTCCT 59.821 55.000 0.00 0.00 45.36 3.85
4568 7527 3.045601 AGAGAAATGCTAGTGCGTTGT 57.954 42.857 0.00 0.00 46.57 3.32
4579 7538 2.834267 TGCGTTGTATGTCACGCAT 58.166 47.368 14.87 0.00 44.49 4.73
4589 7548 4.529219 TCACGCATGCCTAGGCCG 62.529 66.667 30.81 26.95 41.09 6.13
4594 7553 2.440065 CATGCCTAGGCCGCCAAA 60.440 61.111 30.81 11.72 41.09 3.28
4631 7591 1.239968 CCTTCTGCCAGTTCACCAGC 61.240 60.000 0.00 0.00 0.00 4.85
4702 7663 2.668212 CCGGTTGGCGAGCTTCAA 60.668 61.111 1.96 0.00 0.00 2.69
4770 7731 1.364626 GCTCAGGACATGGCGAACAG 61.365 60.000 0.00 0.00 0.00 3.16
4778 7739 3.210012 ATGGCGAACAGGGGCAAGT 62.210 57.895 0.00 0.00 43.55 3.16
4910 7871 3.680169 TCCAAGATACTGGATGGGGAAT 58.320 45.455 0.00 0.00 40.71 3.01
4970 7931 0.667487 CTGACTCGTCCGTGCAACAT 60.667 55.000 0.00 0.00 35.74 2.71
5091 8052 0.729816 GTGACAGAAGAGGACGACGC 60.730 60.000 0.00 0.00 0.00 5.19
5209 8192 3.431922 GTCGATGACCAGGACGAATAA 57.568 47.619 0.00 0.00 36.57 1.40
5222 8205 3.810941 GGACGAATAACATGGGCGAAATA 59.189 43.478 0.00 0.00 0.00 1.40
5237 8220 2.193087 AAATAGGGTCGCCTTGCCGT 62.193 55.000 0.00 0.00 0.00 5.68
5238 8221 2.193087 AATAGGGTCGCCTTGCCGTT 62.193 55.000 0.00 0.00 0.00 4.44
5274 8262 1.229886 TGGTCCGGGGGTTCCATTA 60.230 57.895 0.00 0.00 34.36 1.90
5350 8338 1.978617 CGCCCAAAGCCAAGGTGAT 60.979 57.895 0.00 0.00 38.78 3.06
5382 8370 2.503869 AGAGGAAGGGCCATGATACT 57.496 50.000 6.18 0.00 40.02 2.12
5388 8376 0.465705 AGGGCCATGATACTGTGTCG 59.534 55.000 6.18 0.00 0.00 4.35
5421 8409 1.137825 GTCGAGCTTGAGGAGGACG 59.862 63.158 3.10 0.00 0.00 4.79
5453 8441 1.153628 GGTTATGCAGGAGACGCGT 60.154 57.895 13.85 13.85 34.41 6.01
5632 8621 4.214327 CGAAGAGGGAGGAGGCGC 62.214 72.222 0.00 0.00 0.00 6.53
5781 8773 0.828022 ACTCCGCGGTAAATCCATCA 59.172 50.000 27.15 0.00 35.57 3.07
5808 8800 4.096003 GCCTTGCCAGCCGGTAGA 62.096 66.667 1.90 0.00 33.28 2.59
5875 8867 1.002134 CCGGACATGTCAAAGGCCT 60.002 57.895 26.47 0.00 0.00 5.19
5960 8952 2.092968 TGAAGTGCTCGAAGGCCATATT 60.093 45.455 5.01 0.00 0.00 1.28
5997 8989 4.830826 GTCTGAGACCAAATTTCCGTTT 57.169 40.909 0.00 0.00 0.00 3.60
6012 9004 3.218453 TCCGTTTTCATGAAGCTGGAAA 58.782 40.909 17.35 3.64 0.00 3.13
6059 9051 1.065854 AGCGTGAATCTTCAGGAAGGG 60.066 52.381 14.86 0.00 43.66 3.95
6150 9142 0.464373 CGAGGCCAAGGTATGCACAT 60.464 55.000 5.01 0.00 0.00 3.21
6207 9199 4.436998 GGGCGGACGTCCACTCTG 62.437 72.222 32.80 17.77 40.19 3.35
6233 9225 9.355215 GGACGGTAGATATATTTGTATGAGTTG 57.645 37.037 0.00 0.00 0.00 3.16
6311 9303 3.119173 GCTATTGCTACCAAATTGCCACA 60.119 43.478 0.00 0.00 34.05 4.17
6453 9448 1.003839 TGCGGGAAAGGCACAGTAG 60.004 57.895 0.00 0.00 35.04 2.57
6456 9451 0.736325 CGGGAAAGGCACAGTAGTCG 60.736 60.000 0.00 0.00 0.00 4.18
6809 9804 8.815565 TTGCAGGTAACCATTATTATTCTTGA 57.184 30.769 0.00 0.00 37.17 3.02
6812 9807 8.560374 GCAGGTAACCATTATTATTCTTGACTC 58.440 37.037 0.00 0.00 37.17 3.36
6980 9975 6.925610 TTGTGGTATCAATGAATGAGTAGC 57.074 37.500 0.00 0.00 42.53 3.58
6990 9985 4.212143 TGAATGAGTAGCTGTGCTCAAT 57.788 40.909 17.26 11.53 46.96 2.57
7090 10086 5.337813 CGGGGGTAACAAGATGTTAACTACT 60.338 44.000 15.58 3.43 46.72 2.57
7091 10087 6.111382 GGGGGTAACAAGATGTTAACTACTC 58.889 44.000 15.58 2.60 46.72 2.59
7092 10088 6.111382 GGGGTAACAAGATGTTAACTACTCC 58.889 44.000 15.58 7.42 46.72 3.85
7093 10089 6.111382 GGGTAACAAGATGTTAACTACTCCC 58.889 44.000 15.58 11.54 46.72 4.30
7094 10090 6.070366 GGGTAACAAGATGTTAACTACTCCCT 60.070 42.308 15.58 0.00 46.72 4.20
7095 10091 7.040494 GGTAACAAGATGTTAACTACTCCCTC 58.960 42.308 7.22 0.00 44.76 4.30
7096 10092 5.678955 ACAAGATGTTAACTACTCCCTCC 57.321 43.478 7.22 0.00 0.00 4.30
7097 10093 4.159879 ACAAGATGTTAACTACTCCCTCCG 59.840 45.833 7.22 0.00 0.00 4.63
7098 10094 3.978610 AGATGTTAACTACTCCCTCCGT 58.021 45.455 7.22 0.00 0.00 4.69
7099 10095 3.952967 AGATGTTAACTACTCCCTCCGTC 59.047 47.826 7.22 0.00 0.00 4.79
7100 10096 2.450476 TGTTAACTACTCCCTCCGTCC 58.550 52.381 7.22 0.00 0.00 4.79
7101 10097 1.753649 GTTAACTACTCCCTCCGTCCC 59.246 57.143 0.00 0.00 0.00 4.46
7102 10098 1.002069 TAACTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
7103 10099 0.338814 AACTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
7104 10100 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
7105 10101 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
7106 10102 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
7107 10103 3.400322 ACTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
7108 10104 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
7109 10105 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
7110 10106 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
7111 10107 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
7112 10108 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
7113 10109 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
7114 10110 6.269194 TCCCTCCGTCCCATAATATAAGAAT 58.731 40.000 0.00 0.00 0.00 2.40
7115 10111 6.156256 TCCCTCCGTCCCATAATATAAGAATG 59.844 42.308 0.00 0.00 0.00 2.67
7116 10112 6.070194 CCCTCCGTCCCATAATATAAGAATGT 60.070 42.308 0.00 0.00 0.00 2.71
7117 10113 7.394816 CCTCCGTCCCATAATATAAGAATGTT 58.605 38.462 0.00 0.00 0.00 2.71
7118 10114 7.883311 CCTCCGTCCCATAATATAAGAATGTTT 59.117 37.037 0.00 0.00 0.00 2.83
7119 10115 9.284968 CTCCGTCCCATAATATAAGAATGTTTT 57.715 33.333 0.00 0.00 0.00 2.43
7120 10116 9.635404 TCCGTCCCATAATATAAGAATGTTTTT 57.365 29.630 0.00 0.00 0.00 1.94
7121 10117 9.677567 CCGTCCCATAATATAAGAATGTTTTTG 57.322 33.333 0.00 0.00 0.00 2.44
7129 10125 8.673626 AATATAAGAATGTTTTTGACACTGCG 57.326 30.769 0.00 0.00 42.04 5.18
7130 10126 3.354089 AGAATGTTTTTGACACTGCGG 57.646 42.857 0.00 0.00 42.04 5.69
7131 10127 2.948979 AGAATGTTTTTGACACTGCGGA 59.051 40.909 0.00 0.00 42.04 5.54
7132 10128 3.003689 AGAATGTTTTTGACACTGCGGAG 59.996 43.478 0.85 0.85 42.04 4.63
7133 10129 1.021202 TGTTTTTGACACTGCGGAGG 58.979 50.000 9.36 0.00 32.00 4.30
7134 10130 0.310854 GTTTTTGACACTGCGGAGGG 59.689 55.000 3.92 3.92 0.00 4.30
7183 10179 4.601406 AGCCCCCTGACACATTATTTAA 57.399 40.909 0.00 0.00 0.00 1.52
7184 10180 4.941713 AGCCCCCTGACACATTATTTAAA 58.058 39.130 0.00 0.00 0.00 1.52
7185 10181 4.956075 AGCCCCCTGACACATTATTTAAAG 59.044 41.667 0.00 0.00 0.00 1.85
7225 10224 5.193099 AGATACACTGGTTTATTTGCCCT 57.807 39.130 0.00 0.00 0.00 5.19
7303 10302 6.555360 CCCAGATGTTAACTAATACTCCCTCT 59.445 42.308 7.22 0.00 0.00 3.69
7316 10315 6.652205 ATACTCCCTCTGTCCCAAAATAAA 57.348 37.500 0.00 0.00 0.00 1.40
7392 10705 2.852714 TTTGGGACGGAGGGAGTATA 57.147 50.000 0.00 0.00 0.00 1.47
7393 10706 3.339713 TTTGGGACGGAGGGAGTATAT 57.660 47.619 0.00 0.00 0.00 0.86
7394 10707 3.339713 TTGGGACGGAGGGAGTATATT 57.660 47.619 0.00 0.00 0.00 1.28
7418 10731 6.625362 TGTTAAAGTTTCATGTGTTTGCAGA 58.375 32.000 0.00 0.00 0.00 4.26
7450 10763 8.747538 AGTTAAAAAGTCTACATGTTTCCTGT 57.252 30.769 2.30 0.00 0.00 4.00
7554 10867 9.646522 AGCATTTTGGGACAGATAAATTATACT 57.353 29.630 0.00 0.00 42.39 2.12
7555 10868 9.899226 GCATTTTGGGACAGATAAATTATACTC 57.101 33.333 0.00 0.00 42.39 2.59
7557 10870 8.990163 TTTTGGGACAGATAAATTATACTCCC 57.010 34.615 12.13 12.13 42.39 4.30
7558 10871 7.947782 TTGGGACAGATAAATTATACTCCCT 57.052 36.000 16.78 0.00 42.39 4.20
7559 10872 7.554959 TGGGACAGATAAATTATACTCCCTC 57.445 40.000 16.78 0.00 34.93 4.30
7560 10873 6.500751 TGGGACAGATAAATTATACTCCCTCC 59.499 42.308 16.78 4.50 34.93 4.30
7561 10874 6.351117 GGGACAGATAAATTATACTCCCTCCG 60.351 46.154 11.90 0.00 0.00 4.63
7562 10875 6.210984 GGACAGATAAATTATACTCCCTCCGT 59.789 42.308 0.00 0.00 0.00 4.69
7563 10876 7.229581 ACAGATAAATTATACTCCCTCCGTC 57.770 40.000 0.00 0.00 0.00 4.79
7564 10877 6.210984 ACAGATAAATTATACTCCCTCCGTCC 59.789 42.308 0.00 0.00 0.00 4.79
7565 10878 5.720520 AGATAAATTATACTCCCTCCGTCCC 59.279 44.000 0.00 0.00 0.00 4.46
7566 10879 3.339713 AATTATACTCCCTCCGTCCCA 57.660 47.619 0.00 0.00 0.00 4.37
7567 10880 3.562108 ATTATACTCCCTCCGTCCCAT 57.438 47.619 0.00 0.00 0.00 4.00
7568 10881 4.687262 ATTATACTCCCTCCGTCCCATA 57.313 45.455 0.00 0.00 0.00 2.74
7569 10882 4.474303 TTATACTCCCTCCGTCCCATAA 57.526 45.455 0.00 0.00 0.00 1.90
7570 10883 3.562108 ATACTCCCTCCGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
7571 10884 4.687262 ATACTCCCTCCGTCCCATAATA 57.313 45.455 0.00 0.00 0.00 0.98
7572 10885 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
7573 10886 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
7574 10887 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
7575 10888 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
7576 10889 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
7577 10890 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
7578 10891 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
7579 10892 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
7580 10893 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
7581 10894 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
7582 10895 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
7583 10896 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
7584 10897 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
7585 10898 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
7586 10899 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
7587 10900 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
7588 10901 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
7589 10902 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
7590 10903 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
7593 10906 8.773404 AATATAAGAGCGTTTTTGACACTAGT 57.227 30.769 0.00 0.00 0.00 2.57
7594 10907 6.707599 ATAAGAGCGTTTTTGACACTAGTC 57.292 37.500 0.00 0.00 45.19 2.59
7595 10908 4.323553 AGAGCGTTTTTGACACTAGTCT 57.676 40.909 0.00 0.00 45.20 3.24
7596 10909 5.449107 AGAGCGTTTTTGACACTAGTCTA 57.551 39.130 0.00 0.00 45.20 2.59
7597 10910 5.462405 AGAGCGTTTTTGACACTAGTCTAG 58.538 41.667 5.27 5.27 45.20 2.43
7598 10911 5.009811 AGAGCGTTTTTGACACTAGTCTAGT 59.990 40.000 6.71 6.71 45.20 2.57
7611 10924 5.117287 CACTAGTCTAGTGTCAAAAACGCTC 59.883 44.000 25.89 0.00 45.69 5.03
7612 10925 4.323553 AGTCTAGTGTCAAAAACGCTCT 57.676 40.909 0.00 0.00 45.69 4.09
7613 10926 4.694339 AGTCTAGTGTCAAAAACGCTCTT 58.306 39.130 0.00 0.00 45.69 2.85
7614 10927 5.839621 AGTCTAGTGTCAAAAACGCTCTTA 58.160 37.500 0.00 0.00 45.69 2.10
7615 10928 6.456501 AGTCTAGTGTCAAAAACGCTCTTAT 58.543 36.000 0.00 0.00 45.69 1.73
7616 10929 7.600065 AGTCTAGTGTCAAAAACGCTCTTATA 58.400 34.615 0.00 0.00 45.69 0.98
7617 10930 8.251721 AGTCTAGTGTCAAAAACGCTCTTATAT 58.748 33.333 0.00 0.00 45.69 0.86
7618 10931 8.870879 GTCTAGTGTCAAAAACGCTCTTATATT 58.129 33.333 0.00 0.00 45.69 1.28
7622 10935 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
7623 10936 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
7624 10937 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
7625 10938 8.784043 GTCAAAAACGCTCTTATATTATGGGAT 58.216 33.333 0.00 0.00 0.00 3.85
7626 10939 8.783093 TCAAAAACGCTCTTATATTATGGGATG 58.217 33.333 0.00 0.00 0.00 3.51
7627 10940 7.687941 AAAACGCTCTTATATTATGGGATGG 57.312 36.000 0.00 0.00 0.00 3.51
7628 10941 6.620877 AACGCTCTTATATTATGGGATGGA 57.379 37.500 0.00 0.00 0.00 3.41
7629 10942 6.227298 ACGCTCTTATATTATGGGATGGAG 57.773 41.667 0.00 0.00 0.00 3.86
7630 10943 5.129485 ACGCTCTTATATTATGGGATGGAGG 59.871 44.000 0.00 0.00 0.00 4.30
7631 10944 5.453903 CGCTCTTATATTATGGGATGGAGGG 60.454 48.000 0.00 0.00 0.00 4.30
7930 11243 3.609853 TGGTTCTAGACATCATTGTGGC 58.390 45.455 0.00 0.00 35.79 5.01
7980 11293 6.434340 AGAATGTCTTTTGAGGTTACCCATTC 59.566 38.462 13.85 13.85 34.73 2.67
8066 11379 3.702045 AGTACCTCACTTCATACTCCAGC 59.298 47.826 0.00 0.00 31.59 4.85
8068 11381 2.763448 ACCTCACTTCATACTCCAGCTC 59.237 50.000 0.00 0.00 0.00 4.09
8093 11406 8.946085 TCGTGAGCATTAGACTTAAATTTGATT 58.054 29.630 0.00 0.00 0.00 2.57
8207 11520 2.174854 ACAAGTGTAAGAGGGCTTTGGT 59.825 45.455 0.00 0.00 35.56 3.67
8291 11604 7.067421 ACTATTCTGTTACTAGCTGGTCCATA 58.933 38.462 5.78 0.00 0.00 2.74
8372 11685 1.565759 TGGCTAGAACATTCCTGGCAT 59.434 47.619 0.00 0.00 39.49 4.40
8373 11686 2.225467 GGCTAGAACATTCCTGGCATC 58.775 52.381 0.00 0.00 39.49 3.91
8374 11687 2.421952 GGCTAGAACATTCCTGGCATCA 60.422 50.000 0.00 0.00 39.49 3.07
8662 11977 1.353103 GAGCGGACGGATGCAATTG 59.647 57.895 0.00 0.00 0.00 2.32
8709 12024 3.056821 TCGAAGACGATTGATCCTGTTGT 60.057 43.478 0.00 0.00 43.81 3.32
8723 12042 3.375922 TCCTGTTGTTTCACCGAAAAGTC 59.624 43.478 0.00 0.00 33.14 3.01
8761 12080 0.034089 TGGAGAGATCTCAGCCGTCA 60.034 55.000 24.39 9.84 44.60 4.35
8791 12110 0.468226 TGTTGGTTCTGGAAGCGAGT 59.532 50.000 7.80 0.00 41.36 4.18
8868 12187 9.141400 GTTGTTTCTCTTAGTGATAGGTAAGTG 57.859 37.037 0.00 0.00 0.00 3.16
8888 12207 5.084519 AGTGACCTGTCTAGTTTGGTATCA 58.915 41.667 0.00 0.00 32.30 2.15
8969 12289 9.236006 AGTTAGTCAGCAATGTGATATTTTCTT 57.764 29.630 0.00 0.00 0.00 2.52
9122 12442 7.340232 TGCAACATTTTATTCAGCTCTTCCTAT 59.660 33.333 0.00 0.00 0.00 2.57
9140 12460 5.455872 TCCTATTTGCTACTAGCTACACCT 58.544 41.667 9.49 0.00 42.97 4.00
9141 12461 5.302059 TCCTATTTGCTACTAGCTACACCTG 59.698 44.000 9.49 0.00 42.97 4.00
9218 12538 4.792068 TCAAACTTCCAGTTCCATGTTCT 58.208 39.130 0.00 0.00 37.47 3.01
9273 12593 0.107165 ATAAGGTCGCCCTCTTTGCC 60.107 55.000 0.00 0.00 41.56 4.52
9288 12608 1.658686 TTGCCGTTTGTCGCCAGTTT 61.659 50.000 0.00 0.00 38.35 2.66
9333 12653 1.336887 CGTGATGAACAGGAGAACGGT 60.337 52.381 0.00 0.00 36.62 4.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 3.408634 ACACATAAAGGTTGTTCGGAGG 58.591 45.455 0.00 0.00 0.00 4.30
14 15 4.513692 CAGAACACATAAAGGTTGTTCGGA 59.486 41.667 7.74 0.00 42.36 4.55
17 18 6.431234 AGATCCAGAACACATAAAGGTTGTTC 59.569 38.462 5.71 5.71 39.12 3.18
22 23 6.620877 TGTAGATCCAGAACACATAAAGGT 57.379 37.500 0.00 0.00 0.00 3.50
27 28 5.363868 CCTCCTTGTAGATCCAGAACACATA 59.636 44.000 0.00 0.00 0.00 2.29
36 37 3.285484 GACGTACCTCCTTGTAGATCCA 58.715 50.000 0.00 0.00 0.00 3.41
37 38 3.285484 TGACGTACCTCCTTGTAGATCC 58.715 50.000 0.00 0.00 0.00 3.36
38 39 4.579340 TCATGACGTACCTCCTTGTAGATC 59.421 45.833 0.00 0.00 0.00 2.75
81 82 6.422776 AAATCGGTATCGGATAATCATTGC 57.577 37.500 0.00 0.00 36.95 3.56
99 100 4.218265 TGCACGTTGAGAAATGAAAATCG 58.782 39.130 0.00 0.00 0.00 3.34
105 106 4.754618 AGTACAATGCACGTTGAGAAATGA 59.245 37.500 9.50 0.00 33.37 2.57
190 191 1.964448 TCGACAACGAGCACTCCAT 59.036 52.632 0.00 0.00 43.81 3.41
199 200 1.046984 CGACGTCAATTCGACAACGA 58.953 50.000 17.16 0.00 45.70 3.85
201 202 1.134226 ACCGACGTCAATTCGACAAC 58.866 50.000 17.16 0.00 45.70 3.32
226 227 1.668419 AAGGCCGGAATTCAGATTCG 58.332 50.000 5.05 0.87 42.12 3.34
227 228 2.099756 CCAAAGGCCGGAATTCAGATTC 59.900 50.000 5.05 0.00 40.78 2.52
231 232 2.192605 CCCAAAGGCCGGAATTCAG 58.807 57.895 5.05 2.79 0.00 3.02
254 255 1.362932 AGAGTGATCAGGTGTAGGGGT 59.637 52.381 0.00 0.00 0.00 4.95
284 285 3.509184 TCCAATTTCATGCGGACAAATGA 59.491 39.130 0.00 0.00 0.00 2.57
293 294 7.990541 TTCTTTTGATATCCAATTTCATGCG 57.009 32.000 0.00 0.00 34.23 4.73
367 380 2.270434 ACCACCTCCACTATCACCAT 57.730 50.000 0.00 0.00 0.00 3.55
374 387 1.561076 TCTACGCTACCACCTCCACTA 59.439 52.381 0.00 0.00 0.00 2.74
381 394 3.562505 CGATAACATCTACGCTACCACC 58.437 50.000 0.00 0.00 0.00 4.61
399 412 2.045926 GCCACAGTCAAGGCCGAT 60.046 61.111 0.00 0.00 45.18 4.18
405 418 1.961277 GTCCACCGCCACAGTCAAG 60.961 63.158 0.00 0.00 0.00 3.02
442 455 4.520492 TCATCTATGTCAGCTTCATCGCTA 59.480 41.667 4.66 0.00 38.41 4.26
450 463 5.356470 GCTCCTTTTTCATCTATGTCAGCTT 59.644 40.000 0.00 0.00 0.00 3.74
459 472 5.819991 AGATGTTGGCTCCTTTTTCATCTA 58.180 37.500 0.00 0.00 38.72 1.98
465 478 5.876651 AAGAAAGATGTTGGCTCCTTTTT 57.123 34.783 0.00 0.00 0.00 1.94
499 512 6.944557 AATTAAAAATTCGCCGAAGAAAGG 57.055 33.333 5.52 0.00 33.43 3.11
500 513 8.699749 AGAAAATTAAAAATTCGCCGAAGAAAG 58.300 29.630 5.52 0.00 33.43 2.62
508 521 9.891828 AATCCAAAAGAAAATTAAAAATTCGCC 57.108 25.926 0.00 0.00 0.00 5.54
689 706 1.270041 TGCGAACCAGGCCAAATTTTC 60.270 47.619 5.01 0.00 0.00 2.29
692 709 0.755686 TTTGCGAACCAGGCCAAATT 59.244 45.000 5.01 0.00 0.00 1.82
721 738 3.469863 TTCTTTGTGGCGCGTCCCT 62.470 57.895 8.89 0.00 0.00 4.20
728 745 3.250762 TCTGATGTTTCTTCTTTGTGGCG 59.749 43.478 0.00 0.00 0.00 5.69
752 769 7.093354 CACGTTGATAGATGGTGCTATTATCT 58.907 38.462 0.00 0.00 35.49 1.98
753 770 6.311445 CCACGTTGATAGATGGTGCTATTATC 59.689 42.308 0.00 0.00 31.45 1.75
754 771 6.166279 CCACGTTGATAGATGGTGCTATTAT 58.834 40.000 0.00 0.00 31.45 1.28
794 868 0.614415 GCCCACCCACATTGATGGAA 60.614 55.000 6.79 0.00 43.02 3.53
796 870 2.059786 GGCCCACCCACATTGATGG 61.060 63.158 0.00 0.00 39.71 3.51
797 871 2.417257 CGGCCCACCCACATTGATG 61.417 63.158 0.00 0.00 0.00 3.07
830 906 2.871080 CGCGCGCCAATTGTGAAG 60.871 61.111 27.72 2.72 0.00 3.02
834 910 3.872409 GACAACGCGCGCCAATTGT 62.872 57.895 31.19 31.19 37.97 2.71
862 940 0.105194 TCTTGTCTGGACTGGACCCA 60.105 55.000 2.38 0.00 33.22 4.51
928 1006 4.776322 TGGCGCGGAACAGGGATG 62.776 66.667 8.83 0.00 0.00 3.51
929 1007 4.778143 GTGGCGCGGAACAGGGAT 62.778 66.667 8.83 0.00 0.00 3.85
1132 1212 2.029838 TCTTCTCCGGGTCGTAGTAC 57.970 55.000 0.00 0.00 0.00 2.73
1147 1227 0.611714 TGGGGAAGTAGCGGTTCTTC 59.388 55.000 21.45 21.45 39.21 2.87
1722 1804 1.800586 TGTTTGAGCAGAGAACGCATC 59.199 47.619 0.00 0.00 0.00 3.91
1723 1805 1.882912 TGTTTGAGCAGAGAACGCAT 58.117 45.000 0.00 0.00 0.00 4.73
1726 1808 4.631377 TGGAATATGTTTGAGCAGAGAACG 59.369 41.667 0.00 0.00 0.00 3.95
1728 1810 5.122239 CGTTGGAATATGTTTGAGCAGAGAA 59.878 40.000 0.00 0.00 0.00 2.87
1731 1813 3.689161 CCGTTGGAATATGTTTGAGCAGA 59.311 43.478 0.00 0.00 0.00 4.26
1815 1897 7.420800 TCTGTCTTCAAGAAAAGAGAAATTGC 58.579 34.615 0.00 0.00 35.99 3.56
1867 1952 9.350357 CAACTGAATATCAAAGAATCCAACAAG 57.650 33.333 0.00 0.00 0.00 3.16
1934 2019 6.506147 TGCCAGATAAAAATATGTCATGCAC 58.494 36.000 0.00 0.00 0.00 4.57
1935 2020 6.546772 TCTGCCAGATAAAAATATGTCATGCA 59.453 34.615 0.00 0.00 0.00 3.96
2420 2506 4.940046 GCAACTCTCTCAATTCTTCCATGA 59.060 41.667 0.00 0.00 0.00 3.07
2425 2511 6.740411 ATGAAGCAACTCTCTCAATTCTTC 57.260 37.500 0.00 0.00 0.00 2.87
2435 2521 4.935885 ACGATCAAATGAAGCAACTCTC 57.064 40.909 0.00 0.00 0.00 3.20
2662 2750 7.132863 CAGCTTTGAACTAAGGTTGAACTAAC 58.867 38.462 0.00 0.00 35.58 2.34
2663 2751 6.238648 GCAGCTTTGAACTAAGGTTGAACTAA 60.239 38.462 0.00 0.00 35.58 2.24
2665 2753 4.036852 GCAGCTTTGAACTAAGGTTGAACT 59.963 41.667 0.00 0.00 35.58 3.01
2666 2754 4.290969 GCAGCTTTGAACTAAGGTTGAAC 58.709 43.478 0.00 0.00 35.58 3.18
2667 2755 3.003275 CGCAGCTTTGAACTAAGGTTGAA 59.997 43.478 0.00 0.00 35.58 2.69
2668 2756 2.548057 CGCAGCTTTGAACTAAGGTTGA 59.452 45.455 0.00 0.00 35.58 3.18
2669 2757 2.548057 TCGCAGCTTTGAACTAAGGTTG 59.452 45.455 0.00 0.00 35.58 3.77
2670 2758 2.548480 GTCGCAGCTTTGAACTAAGGTT 59.452 45.455 0.00 0.00 38.52 3.50
2671 2759 2.143925 GTCGCAGCTTTGAACTAAGGT 58.856 47.619 0.00 0.00 36.35 3.50
2672 2760 2.096218 GTGTCGCAGCTTTGAACTAAGG 60.096 50.000 0.00 0.00 0.00 2.69
2673 2761 2.802816 AGTGTCGCAGCTTTGAACTAAG 59.197 45.455 0.00 0.00 0.00 2.18
2674 2762 2.833794 AGTGTCGCAGCTTTGAACTAA 58.166 42.857 0.00 0.00 0.00 2.24
2675 2763 2.526304 AGTGTCGCAGCTTTGAACTA 57.474 45.000 0.00 0.00 0.00 2.24
2676 2764 1.668419 AAGTGTCGCAGCTTTGAACT 58.332 45.000 0.00 0.00 0.00 3.01
2677 2765 3.813529 ATAAGTGTCGCAGCTTTGAAC 57.186 42.857 0.00 0.00 0.00 3.18
2678 2766 5.163764 CCATAATAAGTGTCGCAGCTTTGAA 60.164 40.000 0.00 0.00 0.00 2.69
2679 2767 4.332543 CCATAATAAGTGTCGCAGCTTTGA 59.667 41.667 0.00 0.00 0.00 2.69
2680 2768 4.332543 TCCATAATAAGTGTCGCAGCTTTG 59.667 41.667 0.00 0.00 0.00 2.77
2681 2769 4.513442 TCCATAATAAGTGTCGCAGCTTT 58.487 39.130 0.00 0.00 0.00 3.51
2729 2817 2.847901 CTTCTGAATGCAGCGAACTTG 58.152 47.619 0.00 0.00 42.01 3.16
2735 2823 1.198408 TCAAAGCTTCTGAATGCAGCG 59.802 47.619 0.00 0.00 39.88 5.18
2903 2992 9.191995 CCACCTAATGAAACAAATGACTTTAAC 57.808 33.333 0.00 0.00 0.00 2.01
2906 2995 7.255942 CCTCCACCTAATGAAACAAATGACTTT 60.256 37.037 0.00 0.00 0.00 2.66
3010 3101 4.038042 CCAAGAAAAAGGACCTTCCACTTC 59.962 45.833 7.34 8.41 39.61 3.01
3064 3157 7.798596 ATCCACAAGCTTAATTGATACAGAG 57.201 36.000 0.00 0.00 34.20 3.35
3258 3359 5.066893 CAGACCATTGGACATATGAAACCTG 59.933 44.000 10.37 5.45 0.00 4.00
3341 6290 3.316071 TGGTATGTGCAAGGCAAATTG 57.684 42.857 0.00 0.00 41.47 2.32
3343 6292 2.899256 AGTTGGTATGTGCAAGGCAAAT 59.101 40.909 0.00 0.00 41.47 2.32
3349 6298 5.437289 TTCAAGAAGTTGGTATGTGCAAG 57.563 39.130 0.00 0.00 34.09 4.01
3363 6312 8.508875 AGCCAATTGCATTTTTATTTCAAGAAG 58.491 29.630 0.00 0.00 44.83 2.85
3415 6364 6.585695 AATAGAGGCATGAGGCATTTATTG 57.414 37.500 0.00 0.00 40.63 1.90
3460 6410 3.057315 CCAGCTTGGTGTATTGGTGAAAG 60.057 47.826 0.00 0.00 31.35 2.62
3473 6423 1.382522 CAATGATACGCCAGCTTGGT 58.617 50.000 4.45 0.00 40.46 3.67
3507 6457 4.932200 GGTGTCCTCAACTCTTGTATTCTG 59.068 45.833 0.00 0.00 0.00 3.02
3518 6468 1.178276 CGAGCTAGGTGTCCTCAACT 58.822 55.000 0.00 0.00 44.54 3.16
3584 6534 1.003839 CTGTAACTGGGCCGAGCAA 60.004 57.895 15.66 0.00 0.00 3.91
3605 6556 4.201685 GCTGTAATTGACGCGATGTAAACT 60.202 41.667 15.93 0.00 0.00 2.66
3668 6619 3.436704 TGTTTGCTTCGATCCAAGATGAC 59.563 43.478 4.05 0.00 0.00 3.06
3711 6662 0.924090 GCTTGCATCTTCGACCTACG 59.076 55.000 0.00 0.00 44.09 3.51
3713 6664 0.530744 ACGCTTGCATCTTCGACCTA 59.469 50.000 0.00 0.00 0.00 3.08
3797 6748 1.068741 GCTACTAACTCCATCCCGGTG 59.931 57.143 0.00 0.00 35.57 4.94
3800 6751 1.001597 GACGCTACTAACTCCATCCCG 60.002 57.143 0.00 0.00 0.00 5.14
3810 6761 2.290768 ACTGGTGGAGAGACGCTACTAA 60.291 50.000 0.00 0.00 0.00 2.24
3811 6762 1.281287 ACTGGTGGAGAGACGCTACTA 59.719 52.381 0.00 0.00 0.00 1.82
3840 6791 1.528824 CTCCCAATGGCGACCTCAT 59.471 57.895 0.00 0.00 0.00 2.90
3906 6862 2.258013 CCGCCTGCGTTTTCTCCAA 61.258 57.895 10.94 0.00 37.81 3.53
3949 6905 4.471904 TGTGTCCTATGTGATCAAGACC 57.528 45.455 0.00 0.00 0.00 3.85
3972 6928 2.204291 ATTGGCCCACCCTCCTCA 60.204 61.111 0.00 0.00 33.59 3.86
3999 6955 3.704566 TGTTGGACGGCTGAGATATTAGT 59.295 43.478 0.00 0.00 0.00 2.24
4005 6961 0.670546 CGTTGTTGGACGGCTGAGAT 60.671 55.000 0.00 0.00 39.27 2.75
4010 6966 1.890510 GGAACGTTGTTGGACGGCT 60.891 57.895 5.00 0.00 46.77 5.52
4139 7095 2.572284 GGCACGTACTCGGCTTCT 59.428 61.111 0.00 0.00 41.85 2.85
4187 7143 1.015609 TGACCCTATCCTCAGACCCA 58.984 55.000 0.00 0.00 0.00 4.51
4193 7149 2.314852 TCTTCAGGTGACCCTATCCTCA 59.685 50.000 0.00 0.00 39.89 3.86
4250 7206 4.021650 GACGCACTTGGTGTCGAA 57.978 55.556 16.36 0.00 46.10 3.71
4358 7316 2.021457 TCGATTGCCGAGATCACACTA 58.979 47.619 0.00 0.00 43.23 2.74
4359 7317 0.817654 TCGATTGCCGAGATCACACT 59.182 50.000 0.00 0.00 43.23 3.55
4421 7379 1.876497 CTTGGACCATTGGCAACGGG 61.876 60.000 17.61 16.69 42.51 5.28
4427 7385 2.571548 CACCTCTTGGACCATTGGC 58.428 57.895 1.54 0.00 37.04 4.52
4568 7527 0.249868 GCCTAGGCATGCGTGACATA 60.250 55.000 29.33 4.67 36.64 2.29
4579 7538 3.622060 GAGTTTGGCGGCCTAGGCA 62.622 63.158 34.09 12.06 45.22 4.75
4692 7653 0.813210 CCCTCCATCTTGAAGCTCGC 60.813 60.000 0.00 0.00 0.00 5.03
4702 7663 2.123077 CCCTCTCGCCCTCCATCT 60.123 66.667 0.00 0.00 0.00 2.90
4778 7739 4.735132 CTTTCCCGTGGCGAGCGA 62.735 66.667 0.00 0.00 0.00 4.93
4910 7871 0.836606 TCTCTTGCCAGACCACACAA 59.163 50.000 0.00 0.00 0.00 3.33
4970 7931 3.071837 TGCTCCGCGACACCCATA 61.072 61.111 8.23 0.00 0.00 2.74
5209 8192 0.179056 CGACCCTATTTCGCCCATGT 60.179 55.000 0.00 0.00 0.00 3.21
5237 8220 1.826096 CACCCATTGATCATGCCACAA 59.174 47.619 0.00 0.00 0.00 3.33
5238 8221 1.476477 CACCCATTGATCATGCCACA 58.524 50.000 0.00 0.00 0.00 4.17
5388 8376 3.140814 GACATTGCCCGGGCCTTC 61.141 66.667 41.75 26.85 41.09 3.46
5439 8427 0.391661 AAATGACGCGTCTCCTGCAT 60.392 50.000 36.27 20.35 0.00 3.96
5550 8539 0.967887 CGAAGGTGCTCTCCCTGAGA 60.968 60.000 0.00 0.00 45.39 3.27
5632 8621 2.317149 CTGCTCCCTAAGAAGGCCGG 62.317 65.000 0.00 0.00 42.14 6.13
5875 8867 1.634973 TCTTCAGGCCATTCACCATCA 59.365 47.619 5.01 0.00 0.00 3.07
5987 8979 4.280677 TCCAGCTTCATGAAAACGGAAATT 59.719 37.500 9.88 0.00 0.00 1.82
5997 8989 3.896888 ACCACATTTTCCAGCTTCATGAA 59.103 39.130 8.12 8.12 0.00 2.57
6012 9004 0.033366 GCCGGCAGAAAAACCACATT 59.967 50.000 24.80 0.00 0.00 2.71
6059 9051 2.658707 GAAGGCGACACGAGCACAC 61.659 63.158 0.00 0.00 36.08 3.82
6202 9194 8.740906 CATACAAATATATCTACCGTCCAGAGT 58.259 37.037 0.00 0.00 0.00 3.24
6203 9195 8.957466 TCATACAAATATATCTACCGTCCAGAG 58.043 37.037 0.00 0.00 0.00 3.35
6204 9196 8.873186 TCATACAAATATATCTACCGTCCAGA 57.127 34.615 0.00 0.00 0.00 3.86
6205 9197 8.740906 ACTCATACAAATATATCTACCGTCCAG 58.259 37.037 0.00 0.00 0.00 3.86
6206 9198 8.645814 ACTCATACAAATATATCTACCGTCCA 57.354 34.615 0.00 0.00 0.00 4.02
6207 9199 9.355215 CAACTCATACAAATATATCTACCGTCC 57.645 37.037 0.00 0.00 0.00 4.79
6233 9225 3.686916 AAGTTCAGGAACCAGCTAGAC 57.313 47.619 8.47 0.00 42.06 2.59
6292 9284 4.556592 AATGTGGCAATTTGGTAGCAAT 57.443 36.364 8.40 0.00 0.00 3.56
6311 9303 6.536224 GGTATGTTGTAGTAACTACGCCAAAT 59.464 38.462 0.00 1.87 39.58 2.32
6430 9425 2.745884 TGCCTTTCCCGCACATCG 60.746 61.111 0.00 0.00 38.08 3.84
6456 9451 1.112113 TGAAGATCGACCAGTAGGGC 58.888 55.000 0.00 0.00 42.05 5.19
6559 9554 5.534654 ATGGCTACATTAAACACACTGTGTT 59.465 36.000 19.88 19.88 45.73 3.32
6809 9804 2.029828 CCAAACTAGAGTGTCAGCGAGT 60.030 50.000 0.00 0.00 0.00 4.18
6812 9807 2.288213 TGTCCAAACTAGAGTGTCAGCG 60.288 50.000 0.00 0.00 0.00 5.18
6871 9866 0.687354 GACAGAGAAACCAGGCTGGA 59.313 55.000 38.99 0.00 40.96 3.86
6990 9985 5.055812 GTGGCAAATCAATCCTGTGAAAAA 58.944 37.500 0.00 0.00 0.00 1.94
7090 10086 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
7091 10087 6.070194 ACATTCTTATATTATGGGACGGAGGG 60.070 42.308 0.00 0.00 0.00 4.30
7092 10088 6.947464 ACATTCTTATATTATGGGACGGAGG 58.053 40.000 0.00 0.00 0.00 4.30
7093 10089 8.848474 AAACATTCTTATATTATGGGACGGAG 57.152 34.615 0.00 0.00 0.00 4.63
7094 10090 9.635404 AAAAACATTCTTATATTATGGGACGGA 57.365 29.630 0.00 0.00 0.00 4.69
7095 10091 9.677567 CAAAAACATTCTTATATTATGGGACGG 57.322 33.333 0.00 0.00 0.00 4.79
7103 10099 9.767684 CGCAGTGTCAAAAACATTCTTATATTA 57.232 29.630 0.00 0.00 40.80 0.98
7104 10100 7.754924 CCGCAGTGTCAAAAACATTCTTATATT 59.245 33.333 0.00 0.00 40.80 1.28
7105 10101 7.120579 TCCGCAGTGTCAAAAACATTCTTATAT 59.879 33.333 0.00 0.00 40.80 0.86
7106 10102 6.428465 TCCGCAGTGTCAAAAACATTCTTATA 59.572 34.615 0.00 0.00 40.80 0.98
7107 10103 5.240623 TCCGCAGTGTCAAAAACATTCTTAT 59.759 36.000 0.00 0.00 40.80 1.73
7108 10104 4.576873 TCCGCAGTGTCAAAAACATTCTTA 59.423 37.500 0.00 0.00 40.80 2.10
7109 10105 3.380004 TCCGCAGTGTCAAAAACATTCTT 59.620 39.130 0.00 0.00 40.80 2.52
7110 10106 2.948979 TCCGCAGTGTCAAAAACATTCT 59.051 40.909 0.00 0.00 40.80 2.40
7111 10107 3.300009 CTCCGCAGTGTCAAAAACATTC 58.700 45.455 0.00 0.00 40.80 2.67
7112 10108 2.034558 CCTCCGCAGTGTCAAAAACATT 59.965 45.455 0.00 0.00 40.80 2.71
7113 10109 1.608590 CCTCCGCAGTGTCAAAAACAT 59.391 47.619 0.00 0.00 40.80 2.71
7114 10110 1.021202 CCTCCGCAGTGTCAAAAACA 58.979 50.000 0.00 0.00 34.78 2.83
7115 10111 0.310854 CCCTCCGCAGTGTCAAAAAC 59.689 55.000 0.00 0.00 0.00 2.43
7116 10112 0.181587 TCCCTCCGCAGTGTCAAAAA 59.818 50.000 0.00 0.00 0.00 1.94
7117 10113 0.250295 CTCCCTCCGCAGTGTCAAAA 60.250 55.000 0.00 0.00 0.00 2.44
7118 10114 1.371183 CTCCCTCCGCAGTGTCAAA 59.629 57.895 0.00 0.00 0.00 2.69
7119 10115 0.541063 TACTCCCTCCGCAGTGTCAA 60.541 55.000 0.00 0.00 0.00 3.18
7120 10116 0.541063 TTACTCCCTCCGCAGTGTCA 60.541 55.000 0.00 0.00 0.00 3.58
7121 10117 0.824759 ATTACTCCCTCCGCAGTGTC 59.175 55.000 0.00 0.00 0.00 3.67
7122 10118 2.032620 CTATTACTCCCTCCGCAGTGT 58.967 52.381 0.00 0.00 0.00 3.55
7123 10119 2.307768 TCTATTACTCCCTCCGCAGTG 58.692 52.381 0.00 0.00 0.00 3.66
7124 10120 2.750141 TCTATTACTCCCTCCGCAGT 57.250 50.000 0.00 0.00 0.00 4.40
7125 10121 5.723672 TTTATCTATTACTCCCTCCGCAG 57.276 43.478 0.00 0.00 0.00 5.18
7126 10122 6.269077 TCATTTTATCTATTACTCCCTCCGCA 59.731 38.462 0.00 0.00 0.00 5.69
7127 10123 6.698380 TCATTTTATCTATTACTCCCTCCGC 58.302 40.000 0.00 0.00 0.00 5.54
7128 10124 7.324178 CCTCATTTTATCTATTACTCCCTCCG 58.676 42.308 0.00 0.00 0.00 4.63
7129 10125 7.037945 AGCCTCATTTTATCTATTACTCCCTCC 60.038 40.741 0.00 0.00 0.00 4.30
7130 10126 7.821846 CAGCCTCATTTTATCTATTACTCCCTC 59.178 40.741 0.00 0.00 0.00 4.30
7131 10127 7.514127 TCAGCCTCATTTTATCTATTACTCCCT 59.486 37.037 0.00 0.00 0.00 4.20
7132 10128 7.680730 TCAGCCTCATTTTATCTATTACTCCC 58.319 38.462 0.00 0.00 0.00 4.30
7133 10129 8.589338 TCTCAGCCTCATTTTATCTATTACTCC 58.411 37.037 0.00 0.00 0.00 3.85
7134 10130 9.638239 CTCTCAGCCTCATTTTATCTATTACTC 57.362 37.037 0.00 0.00 0.00 2.59
7303 10302 7.595819 AAGTTGAGACATTTATTTTGGGACA 57.404 32.000 0.00 0.00 0.00 4.02
7392 10705 7.763528 TCTGCAAACACATGAAACTTTAACAAT 59.236 29.630 0.00 0.00 0.00 2.71
7393 10706 7.093354 TCTGCAAACACATGAAACTTTAACAA 58.907 30.769 0.00 0.00 0.00 2.83
7394 10707 6.625362 TCTGCAAACACATGAAACTTTAACA 58.375 32.000 0.00 0.00 0.00 2.41
7554 10867 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
7555 10868 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
7556 10869 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
7557 10870 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
7558 10871 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
7559 10872 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
7560 10873 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
7561 10874 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
7562 10875 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
7563 10876 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
7564 10877 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
7567 10880 9.865321 ACTAGTGTCAAAAACGCTCTTATATTA 57.135 29.630 0.00 0.00 45.69 0.98
7568 10881 8.773404 ACTAGTGTCAAAAACGCTCTTATATT 57.227 30.769 0.00 0.00 45.69 1.28
7569 10882 8.251721 AGACTAGTGTCAAAAACGCTCTTATAT 58.748 33.333 0.00 0.00 45.69 0.86
7570 10883 7.600065 AGACTAGTGTCAAAAACGCTCTTATA 58.400 34.615 0.00 0.00 45.69 0.98
7571 10884 6.456501 AGACTAGTGTCAAAAACGCTCTTAT 58.543 36.000 0.00 0.00 45.69 1.73
7572 10885 5.839621 AGACTAGTGTCAAAAACGCTCTTA 58.160 37.500 0.00 0.00 45.69 2.10
7573 10886 4.694339 AGACTAGTGTCAAAAACGCTCTT 58.306 39.130 0.00 0.00 45.69 2.85
7574 10887 4.323553 AGACTAGTGTCAAAAACGCTCT 57.676 40.909 0.00 0.00 45.69 4.09
7575 10888 5.117287 CACTAGACTAGTGTCAAAAACGCTC 59.883 44.000 27.70 0.00 45.69 5.03
7588 10901 5.009811 AGAGCGTTTTTGACACTAGACTAGT 59.990 40.000 9.45 9.45 40.28 2.57
7589 10902 5.462405 AGAGCGTTTTTGACACTAGACTAG 58.538 41.667 8.00 8.00 0.00 2.57
7590 10903 5.449107 AGAGCGTTTTTGACACTAGACTA 57.551 39.130 0.00 0.00 0.00 2.59
7591 10904 4.323553 AGAGCGTTTTTGACACTAGACT 57.676 40.909 0.00 0.00 0.00 3.24
7592 10905 6.707599 ATAAGAGCGTTTTTGACACTAGAC 57.292 37.500 0.00 0.00 0.00 2.59
7593 10906 8.997621 AATATAAGAGCGTTTTTGACACTAGA 57.002 30.769 0.00 0.00 0.00 2.43
7596 10909 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
7597 10910 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
7598 10911 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
7599 10912 8.149973 TCCCATAATATAAGAGCGTTTTTGAC 57.850 34.615 0.00 0.00 0.00 3.18
7600 10913 8.783093 CATCCCATAATATAAGAGCGTTTTTGA 58.217 33.333 0.00 0.00 0.00 2.69
7601 10914 8.023128 CCATCCCATAATATAAGAGCGTTTTTG 58.977 37.037 0.00 0.00 0.00 2.44
7602 10915 7.942341 TCCATCCCATAATATAAGAGCGTTTTT 59.058 33.333 0.00 0.00 0.00 1.94
7603 10916 7.458397 TCCATCCCATAATATAAGAGCGTTTT 58.542 34.615 0.00 0.00 0.00 2.43
7604 10917 7.016153 TCCATCCCATAATATAAGAGCGTTT 57.984 36.000 0.00 0.00 0.00 3.60
7605 10918 6.352222 CCTCCATCCCATAATATAAGAGCGTT 60.352 42.308 0.00 0.00 0.00 4.84
7606 10919 5.129485 CCTCCATCCCATAATATAAGAGCGT 59.871 44.000 0.00 0.00 0.00 5.07
7607 10920 5.453903 CCCTCCATCCCATAATATAAGAGCG 60.454 48.000 0.00 0.00 0.00 5.03
7608 10921 5.667626 TCCCTCCATCCCATAATATAAGAGC 59.332 44.000 0.00 0.00 0.00 4.09
7609 10922 6.905776 ACTCCCTCCATCCCATAATATAAGAG 59.094 42.308 0.00 0.00 0.00 2.85
7610 10923 6.826727 ACTCCCTCCATCCCATAATATAAGA 58.173 40.000 0.00 0.00 0.00 2.10
7611 10924 8.805145 ATACTCCCTCCATCCCATAATATAAG 57.195 38.462 0.00 0.00 0.00 1.73
7614 10927 9.764776 AATAATACTCCCTCCATCCCATAATAT 57.235 33.333 0.00 0.00 0.00 1.28
7615 10928 9.588432 AAATAATACTCCCTCCATCCCATAATA 57.412 33.333 0.00 0.00 0.00 0.98
7616 10929 8.482378 AAATAATACTCCCTCCATCCCATAAT 57.518 34.615 0.00 0.00 0.00 1.28
7617 10930 7.905144 AAATAATACTCCCTCCATCCCATAA 57.095 36.000 0.00 0.00 0.00 1.90
7618 10931 8.998957 TTAAATAATACTCCCTCCATCCCATA 57.001 34.615 0.00 0.00 0.00 2.74
7619 10932 7.905144 TTAAATAATACTCCCTCCATCCCAT 57.095 36.000 0.00 0.00 0.00 4.00
7620 10933 7.715267 TTTAAATAATACTCCCTCCATCCCA 57.285 36.000 0.00 0.00 0.00 4.37
7621 10934 9.025041 CATTTTAAATAATACTCCCTCCATCCC 57.975 37.037 0.00 0.00 0.00 3.85
7622 10935 9.807921 TCATTTTAAATAATACTCCCTCCATCC 57.192 33.333 0.00 0.00 0.00 3.51
7865 11178 3.525199 AGTAGGGTTTCAGCTGGATCAAT 59.475 43.478 15.13 0.00 0.00 2.57
7874 11187 4.192317 CCTGACATAAGTAGGGTTTCAGC 58.808 47.826 0.00 0.00 0.00 4.26
7930 11243 9.926751 CTTCATAGCAGTATATGACAAAAACAG 57.073 33.333 0.00 0.00 40.89 3.16
8066 11379 7.963981 TCAAATTTAAGTCTAATGCTCACGAG 58.036 34.615 0.00 0.00 0.00 4.18
8158 11471 7.504926 TCATACAGAAAAACTATAGGTGGGT 57.495 36.000 4.43 0.00 0.00 4.51
8207 11520 6.770303 TCGATGTTGCAATAATTCCAGGAATA 59.230 34.615 15.55 4.66 31.46 1.75
8271 11584 6.808321 AAATATGGACCAGCTAGTAACAGA 57.192 37.500 0.00 0.00 0.00 3.41
8372 11685 5.181622 GGATTTGCTGAAAATGGCAATTTGA 59.818 36.000 5.05 0.00 45.82 2.69
8373 11686 5.182380 AGGATTTGCTGAAAATGGCAATTTG 59.818 36.000 5.05 0.00 45.82 2.32
8374 11687 5.318630 AGGATTTGCTGAAAATGGCAATTT 58.681 33.333 0.00 0.00 45.82 1.82
8676 11991 0.179161 CGTCTTCGATGCGTCTTCCT 60.179 55.000 4.05 0.00 39.71 3.36
8709 12024 2.912771 TGAGCAGACTTTTCGGTGAAA 58.087 42.857 0.00 0.00 0.00 2.69
8723 12042 2.675056 GCGACACCAGCTTGAGCAG 61.675 63.158 5.70 0.00 45.16 4.24
8761 12080 4.536090 TCCAGAACCAACAGGATCAACTAT 59.464 41.667 0.00 0.00 0.00 2.12
8791 12110 6.360370 GGAGCAGATCCCATATAACTAACA 57.640 41.667 0.00 0.00 43.01 2.41
8868 12187 5.419471 ACTCTGATACCAAACTAGACAGGTC 59.581 44.000 0.00 0.00 35.62 3.85
8939 12259 3.861840 TCACATTGCTGACTAACTAGCC 58.138 45.455 0.00 0.00 39.15 3.93
8969 12289 9.979578 AGAAATATGTTTGTTTGCTAACATTGA 57.020 25.926 14.40 2.25 44.40 2.57
9122 12442 3.119101 GCTCAGGTGTAGCTAGTAGCAAA 60.119 47.826 23.77 8.91 45.56 3.68
9140 12460 3.346315 CAACATACCCTGAACATGCTCA 58.654 45.455 0.00 0.00 0.00 4.26
9141 12461 2.098117 GCAACATACCCTGAACATGCTC 59.902 50.000 0.00 0.00 0.00 4.26
9273 12593 2.032030 AGATTGAAACTGGCGACAAACG 60.032 45.455 0.00 0.00 42.06 3.60
9288 12608 3.568007 CCGAACAAAGTGGGAAAGATTGA 59.432 43.478 0.00 0.00 0.00 2.57
9333 12653 0.250295 CGGTCTCCTTTGCCAGAACA 60.250 55.000 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.