Multiple sequence alignment - TraesCS2B01G280300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G280300 chr2B 100.000 4859 0 0 1 4859 386591132 386595990 0.000000e+00 8973.0
1 TraesCS2B01G280300 chr2B 91.120 732 59 5 1 731 767963261 767963987 0.000000e+00 987.0
2 TraesCS2B01G280300 chr2B 84.647 723 80 20 13 727 793287286 793286587 0.000000e+00 691.0
3 TraesCS2B01G280300 chr2B 90.909 88 8 0 2443 2530 176250129 176250042 8.540000e-23 119.0
4 TraesCS2B01G280300 chr2A 94.282 1434 53 15 741 2170 413075716 413074308 0.000000e+00 2167.0
5 TraesCS2B01G280300 chr2A 94.625 707 22 5 3273 3969 413073251 413072551 0.000000e+00 1081.0
6 TraesCS2B01G280300 chr2A 90.960 354 29 2 4506 4859 413072203 413071853 1.580000e-129 473.0
7 TraesCS2B01G280300 chr2A 91.270 252 17 2 2866 3113 413073496 413073246 6.020000e-89 339.0
8 TraesCS2B01G280300 chr2A 91.736 242 15 5 2203 2440 413074220 413073980 1.010000e-86 331.0
9 TraesCS2B01G280300 chr2A 86.667 255 20 5 4120 4360 413072559 413072305 2.230000e-68 270.0
10 TraesCS2B01G280300 chr2A 92.896 183 13 0 2698 2880 413073695 413073513 2.880000e-67 267.0
11 TraesCS2B01G280300 chr2A 92.617 149 11 0 3970 4118 725349826 725349678 1.060000e-51 215.0
12 TraesCS2B01G280300 chr2D 94.523 1278 48 13 880 2150 318506401 318507663 0.000000e+00 1953.0
13 TraesCS2B01G280300 chr2D 93.058 677 39 5 3294 3969 318508467 318509136 0.000000e+00 983.0
14 TraesCS2B01G280300 chr2D 89.702 369 27 7 4492 4859 318509461 318509819 1.230000e-125 460.0
15 TraesCS2B01G280300 chr2D 93.907 279 16 1 2525 2803 318507914 318508191 2.090000e-113 420.0
16 TraesCS2B01G280300 chr2D 93.431 274 15 2 2840 3113 318508188 318508458 2.110000e-108 403.0
17 TraesCS2B01G280300 chr2D 91.270 252 10 5 2204 2444 318507665 318507915 2.800000e-87 333.0
18 TraesCS2B01G280300 chr2D 89.600 250 17 4 4120 4360 318509128 318509377 4.720000e-80 309.0
19 TraesCS2B01G280300 chr2D 93.820 178 9 2 4347 4523 560959481 560959657 2.880000e-67 267.0
20 TraesCS2B01G280300 chr2D 94.079 152 9 0 3970 4121 558799701 558799550 1.050000e-56 231.0
21 TraesCS2B01G280300 chr2D 91.617 167 13 1 3109 3274 24312359 24312193 3.780000e-56 230.0
22 TraesCS2B01G280300 chr2D 89.831 177 17 1 3099 3274 135157527 135157703 4.890000e-55 226.0
23 TraesCS2B01G280300 chr2D 85.437 206 19 10 527 727 607805102 607804903 2.290000e-48 204.0
24 TraesCS2B01G280300 chr2D 96.154 78 3 0 741 818 318505802 318505879 1.420000e-25 128.0
25 TraesCS2B01G280300 chr1B 93.132 728 46 3 1 727 322691743 322691019 0.000000e+00 1064.0
26 TraesCS2B01G280300 chr1B 84.072 722 85 19 13 726 6387673 6386974 0.000000e+00 669.0
27 TraesCS2B01G280300 chr1B 90.196 204 17 3 4344 4544 476874914 476874711 3.730000e-66 263.0
28 TraesCS2B01G280300 chr1B 100.000 39 0 0 2148 2186 334057674 334057712 6.750000e-09 73.1
29 TraesCS2B01G280300 chr1B 91.489 47 3 1 2141 2186 569422274 569422320 4.060000e-06 63.9
30 TraesCS2B01G280300 chr5B 92.308 728 52 3 1 727 38366023 38366747 0.000000e+00 1031.0
31 TraesCS2B01G280300 chr5B 90.000 150 11 2 3970 4118 137409047 137409193 1.790000e-44 191.0
32 TraesCS2B01G280300 chr5B 89.051 137 13 2 3389 3524 577239886 577239751 8.360000e-38 169.0
33 TraesCS2B01G280300 chr5B 87.302 126 14 2 1988 2112 577240725 577240601 5.070000e-30 143.0
34 TraesCS2B01G280300 chr5B 88.636 88 10 0 2443 2530 67810580 67810493 1.850000e-19 108.0
35 TraesCS2B01G280300 chr5B 88.636 88 10 0 2443 2530 364519335 364519248 1.850000e-19 108.0
36 TraesCS2B01G280300 chr5B 97.619 42 1 0 2146 2187 304124038 304124079 6.750000e-09 73.1
37 TraesCS2B01G280300 chr5B 95.556 45 2 0 2145 2189 549085542 549085498 6.750000e-09 73.1
38 TraesCS2B01G280300 chr7B 87.176 733 79 12 1 727 245608007 245607284 0.000000e+00 819.0
39 TraesCS2B01G280300 chr7B 92.727 165 11 1 3111 3274 619322496 619322660 2.260000e-58 237.0
40 TraesCS2B01G280300 chr7B 89.773 88 9 0 2443 2530 496425681 496425768 3.970000e-21 113.0
41 TraesCS2B01G280300 chr7B 97.619 42 1 0 2146 2187 43568953 43568912 6.750000e-09 73.1
42 TraesCS2B01G280300 chr7B 95.455 44 2 0 2148 2191 743361736 743361779 2.430000e-08 71.3
43 TraesCS2B01G280300 chr7B 95.455 44 2 0 2148 2191 743362582 743362625 2.430000e-08 71.3
44 TraesCS2B01G280300 chr7B 95.349 43 2 0 2148 2190 743370147 743370189 8.730000e-08 69.4
45 TraesCS2B01G280300 chr7B 95.349 43 2 0 2148 2190 743374787 743374829 8.730000e-08 69.4
46 TraesCS2B01G280300 chr7B 95.349 43 2 0 2148 2190 743376051 743376093 8.730000e-08 69.4
47 TraesCS2B01G280300 chr3D 93.503 431 26 2 1 429 588336762 588336332 1.470000e-179 640.0
48 TraesCS2B01G280300 chr3D 91.098 337 28 1 391 727 588336330 588335996 5.730000e-124 455.0
49 TraesCS2B01G280300 chr3D 90.683 322 28 1 406 727 588335726 588335407 1.250000e-115 427.0
50 TraesCS2B01G280300 chr3D 78.746 287 55 6 219 500 416133794 416134079 2.310000e-43 187.0
51 TraesCS2B01G280300 chr3D 89.655 87 9 0 2440 2526 579731248 579731334 1.430000e-20 111.0
52 TraesCS2B01G280300 chr7D 86.989 538 63 6 5 538 415396858 415397392 2.500000e-167 599.0
53 TraesCS2B01G280300 chr7D 95.425 153 7 0 3970 4122 519108336 519108184 1.350000e-60 244.0
54 TraesCS2B01G280300 chr7D 89.333 150 16 0 3969 4118 84339658 84339807 6.420000e-44 189.0
55 TraesCS2B01G280300 chr7D 74.026 539 102 32 218 732 104746559 104747083 8.310000e-43 185.0
56 TraesCS2B01G280300 chr7D 75.053 469 81 30 285 731 379318483 379318029 8.310000e-43 185.0
57 TraesCS2B01G280300 chr7D 87.013 154 14 6 582 731 415397389 415397540 8.360000e-38 169.0
58 TraesCS2B01G280300 chr7D 88.571 70 5 3 663 731 48356236 48356303 1.120000e-11 82.4
59 TraesCS2B01G280300 chr1D 77.139 678 124 24 29 693 260614695 260614036 9.940000e-97 364.0
60 TraesCS2B01G280300 chr1D 94.118 153 9 0 3970 4122 143175724 143175876 2.920000e-57 233.0
61 TraesCS2B01G280300 chr1D 73.763 465 92 22 284 731 298280645 298281096 6.510000e-34 156.0
62 TraesCS2B01G280300 chr1D 89.000 100 10 1 605 704 71611226 71611324 6.600000e-24 122.0
63 TraesCS2B01G280300 chr1A 85.390 308 35 9 424 726 503297713 503297411 1.310000e-80 311.0
64 TraesCS2B01G280300 chr4D 77.248 545 87 28 1 536 8888666 8888150 7.960000e-73 285.0
65 TraesCS2B01G280300 chr4D 94.798 173 7 2 4351 4523 11304535 11304365 8.020000e-68 268.0
66 TraesCS2B01G280300 chr4D 90.909 176 15 1 3103 3277 416867848 416867673 8.130000e-58 235.0
67 TraesCS2B01G280300 chr4D 74.719 534 101 30 221 732 385714075 385713554 1.770000e-49 207.0
68 TraesCS2B01G280300 chr4D 74.242 462 89 21 284 727 448800092 448800541 3.010000e-37 167.0
69 TraesCS2B01G280300 chr4D 73.830 470 88 27 284 731 507690587 507690131 2.340000e-33 154.0
70 TraesCS2B01G280300 chr4B 95.028 181 7 2 4343 4522 565737184 565737005 2.860000e-72 283.0
71 TraesCS2B01G280300 chr4B 91.960 199 16 0 1 199 604135971 604135773 3.700000e-71 279.0
72 TraesCS2B01G280300 chr4B 94.798 173 9 0 4343 4515 113961109 113961281 2.230000e-68 270.0
73 TraesCS2B01G280300 chr4B 76.636 214 47 3 284 495 654319893 654319681 1.110000e-21 115.0
74 TraesCS2B01G280300 chr4B 91.837 49 4 0 2141 2189 464528132 464528084 8.730000e-08 69.4
75 TraesCS2B01G280300 chr4B 97.436 39 1 0 2148 2186 14761687 14761725 3.140000e-07 67.6
76 TraesCS2B01G280300 chr4B 97.436 39 1 0 2147 2185 94523732 94523770 3.140000e-07 67.6
77 TraesCS2B01G280300 chr3A 95.930 172 5 2 4351 4521 649811841 649812011 1.330000e-70 278.0
78 TraesCS2B01G280300 chr3A 90.972 144 13 0 3970 4113 737803826 737803969 1.380000e-45 195.0
79 TraesCS2B01G280300 chr6A 95.322 171 7 1 4348 4518 60016876 60016707 2.230000e-68 270.0
80 TraesCS2B01G280300 chr4A 92.896 183 10 3 4340 4522 648948640 648948461 3.730000e-66 263.0
81 TraesCS2B01G280300 chr4A 91.617 167 13 1 3109 3274 195972595 195972429 3.780000e-56 230.0
82 TraesCS2B01G280300 chr4A 86.517 178 19 5 527 701 657236489 657236664 1.790000e-44 191.0
83 TraesCS2B01G280300 chr4A 97.500 40 1 0 2147 2186 24821191 24821230 8.730000e-08 69.4
84 TraesCS2B01G280300 chrUn 91.146 192 12 4 4336 4526 115400908 115400721 6.240000e-64 255.0
85 TraesCS2B01G280300 chrUn 92.727 165 11 1 3111 3274 358753915 358754079 2.260000e-58 237.0
86 TraesCS2B01G280300 chrUn 95.238 42 2 0 2148 2189 17270420 17270379 3.140000e-07 67.6
87 TraesCS2B01G280300 chr5D 93.529 170 9 2 3106 3274 206590227 206590059 8.070000e-63 252.0
88 TraesCS2B01G280300 chr5D 73.939 495 97 27 257 731 552793987 552794469 2.330000e-38 171.0
89 TraesCS2B01G280300 chr5D 88.321 137 14 2 3389 3524 469510077 469509942 3.890000e-36 163.0
90 TraesCS2B01G280300 chr5D 87.302 126 14 2 1988 2112 469510975 469510851 5.070000e-30 143.0
91 TraesCS2B01G280300 chr7A 96.644 149 5 0 3970 4118 732938463 732938611 1.040000e-61 248.0
92 TraesCS2B01G280300 chr7A 90.698 86 7 1 2442 2526 1900185 1900100 3.970000e-21 113.0
93 TraesCS2B01G280300 chr3B 91.716 169 13 1 3107 3274 12102112 12102280 2.920000e-57 233.0
94 TraesCS2B01G280300 chr3B 88.636 88 10 0 2443 2530 131859119 131859206 1.850000e-19 108.0
95 TraesCS2B01G280300 chr3B 88.764 89 9 1 2443 2530 407324678 407324766 1.850000e-19 108.0
96 TraesCS2B01G280300 chr3B 95.556 45 2 0 2145 2189 354616627 354616583 6.750000e-09 73.1
97 TraesCS2B01G280300 chr5A 89.503 181 16 3 3096 3275 290391684 290391862 4.890000e-55 226.0
98 TraesCS2B01G280300 chr5A 92.982 114 8 0 3389 3502 590578235 590578122 3.010000e-37 167.0
99 TraesCS2B01G280300 chr5A 88.095 126 13 2 1988 2112 590578926 590578802 1.090000e-31 148.0
100 TraesCS2B01G280300 chr5A 90.805 87 7 1 2448 2533 325378685 325378599 1.110000e-21 115.0
101 TraesCS2B01G280300 chr6D 93.846 130 8 0 3989 4118 292962872 292962743 3.840000e-46 196.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G280300 chr2B 386591132 386595990 4858 False 8973.000000 8973 100.000000 1 4859 1 chr2B.!!$F1 4858
1 TraesCS2B01G280300 chr2B 767963261 767963987 726 False 987.000000 987 91.120000 1 731 1 chr2B.!!$F2 730
2 TraesCS2B01G280300 chr2B 793286587 793287286 699 True 691.000000 691 84.647000 13 727 1 chr2B.!!$R2 714
3 TraesCS2B01G280300 chr2A 413071853 413075716 3863 True 704.000000 2167 91.776571 741 4859 7 chr2A.!!$R2 4118
4 TraesCS2B01G280300 chr2D 318505802 318509819 4017 False 623.625000 1953 92.705625 741 4859 8 chr2D.!!$F3 4118
5 TraesCS2B01G280300 chr1B 322691019 322691743 724 True 1064.000000 1064 93.132000 1 727 1 chr1B.!!$R2 726
6 TraesCS2B01G280300 chr1B 6386974 6387673 699 True 669.000000 669 84.072000 13 726 1 chr1B.!!$R1 713
7 TraesCS2B01G280300 chr5B 38366023 38366747 724 False 1031.000000 1031 92.308000 1 727 1 chr5B.!!$F1 726
8 TraesCS2B01G280300 chr7B 245607284 245608007 723 True 819.000000 819 87.176000 1 727 1 chr7B.!!$R2 726
9 TraesCS2B01G280300 chr3D 588335407 588336762 1355 True 507.333333 640 91.761333 1 727 3 chr3D.!!$R1 726
10 TraesCS2B01G280300 chr7D 415396858 415397540 682 False 384.000000 599 87.001000 5 731 2 chr7D.!!$F4 726
11 TraesCS2B01G280300 chr1D 260614036 260614695 659 True 364.000000 364 77.139000 29 693 1 chr1D.!!$R1 664
12 TraesCS2B01G280300 chr4D 8888150 8888666 516 True 285.000000 285 77.248000 1 536 1 chr4D.!!$R1 535
13 TraesCS2B01G280300 chr4D 385713554 385714075 521 True 207.000000 207 74.719000 221 732 1 chr4D.!!$R3 511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
389 407 0.035056 CCTCTTCCGTGCCCATCTTT 60.035 55.0 0.00 0.0 0.0 2.52 F
1718 2866 0.030705 CTCCCCTTCCCCTCTCATCA 60.031 60.0 0.00 0.0 0.0 3.07 F
2097 3250 0.603975 AGAAGGCCGTCAAGAACAGC 60.604 55.0 21.26 0.0 0.0 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1841 2994 0.647925 GGCGCAAGAGAGAAATCGTC 59.352 55.0 10.83 0.0 43.02 4.20 R
3040 4424 0.458889 CGAATGCATGCCAAGGGTTG 60.459 55.0 16.68 0.0 0.00 3.77 R
4051 5455 0.037139 CGTAATCCACCGTGAACCCA 60.037 55.0 0.00 0.0 0.00 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 1.202855 CCGGATTTGCATCTCCTCCAT 60.203 52.381 0.00 0.00 0.00 3.41
108 116 1.080093 GTCGTGTTCCCTGCATCGA 60.080 57.895 0.00 0.00 0.00 3.59
172 182 1.990060 CCCACCCCTCGTCATGTCT 60.990 63.158 0.00 0.00 0.00 3.41
206 217 4.891037 GCATGGCTCCCCTCTGGC 62.891 72.222 0.00 0.00 0.00 4.85
272 285 0.898326 GTCCGGTGGCTTTGGGATTT 60.898 55.000 0.00 0.00 0.00 2.17
274 287 1.506262 CGGTGGCTTTGGGATTTCG 59.494 57.895 0.00 0.00 0.00 3.46
315 329 3.267860 CTGCTCGGCTTGCCGATC 61.268 66.667 32.45 28.56 41.47 3.69
334 349 4.228567 TGGCAACGGCGACACTCA 62.229 61.111 16.62 2.00 42.47 3.41
389 407 0.035056 CCTCTTCCGTGCCCATCTTT 60.035 55.000 0.00 0.00 0.00 2.52
507 566 2.046314 CGTCCCCGGTGCTGATTT 60.046 61.111 0.00 0.00 0.00 2.17
527 1177 2.627945 TGTGGTTGTCTGACTTCACAC 58.372 47.619 19.27 16.72 31.33 3.82
548 1198 2.034558 CGTTGGTTTGGACTTGCATCTT 59.965 45.455 0.00 0.00 0.00 2.40
565 1223 6.177610 TGCATCTTTAGTTAGTGGGTTTAGG 58.822 40.000 0.00 0.00 0.00 2.69
654 1315 1.795872 CTTGCGTTCGTGGATGTGTTA 59.204 47.619 0.00 0.00 0.00 2.41
733 1415 4.715514 CGTATTCGCGAAAAACAAATCC 57.284 40.909 27.23 0.00 0.00 3.01
734 1416 3.234284 CGTATTCGCGAAAAACAAATCCG 59.766 43.478 27.23 6.28 0.00 4.18
735 1417 1.400550 TTCGCGAAAAACAAATCCGC 58.599 45.000 21.14 0.00 42.11 5.54
736 1418 0.589223 TCGCGAAAAACAAATCCGCT 59.411 45.000 6.20 0.00 43.19 5.52
737 1419 0.702383 CGCGAAAAACAAATCCGCTG 59.298 50.000 0.00 0.00 43.19 5.18
738 1420 1.661743 CGCGAAAAACAAATCCGCTGA 60.662 47.619 0.00 0.00 43.19 4.26
739 1421 1.978782 GCGAAAAACAAATCCGCTGAG 59.021 47.619 0.00 0.00 42.24 3.35
747 1429 2.821969 ACAAATCCGCTGAGAGCAAATT 59.178 40.909 0.00 0.00 42.58 1.82
755 1437 4.497006 CCGCTGAGAGCAAATTCAATTAGG 60.497 45.833 0.00 0.00 42.58 2.69
818 1500 8.868522 AAATGAGAGGAAAGTACAATGAATGA 57.131 30.769 0.00 0.00 0.00 2.57
819 1501 8.868522 AATGAGAGGAAAGTACAATGAATGAA 57.131 30.769 0.00 0.00 0.00 2.57
820 1502 9.471702 AATGAGAGGAAAGTACAATGAATGAAT 57.528 29.630 0.00 0.00 0.00 2.57
821 1503 8.272545 TGAGAGGAAAGTACAATGAATGAATG 57.727 34.615 0.00 0.00 0.00 2.67
832 1514 2.221169 TGAATGAATGCGCACCTATCC 58.779 47.619 14.90 1.44 0.00 2.59
866 1548 3.558418 ACACATAGACAAACCACACGTTC 59.442 43.478 0.00 0.00 31.78 3.95
873 1555 2.099592 ACAAACCACACGTTCGAGTAGA 59.900 45.455 0.00 0.00 31.78 2.59
1005 2151 3.083997 CCTGAGGCGGCCTAAGGT 61.084 66.667 35.89 10.90 45.36 3.50
1136 2282 1.940883 AAGCGTACGCCGATTCCTCA 61.941 55.000 34.88 0.00 42.41 3.86
1181 2327 2.030958 GGCCGGTTTTGTCGACGAT 61.031 57.895 11.62 0.00 0.00 3.73
1371 2517 1.066716 TGCCGTAGCTTAATTCACCGT 60.067 47.619 0.00 0.00 40.80 4.83
1408 2554 0.820226 CATCTCCTCTCTTCCACGCA 59.180 55.000 0.00 0.00 0.00 5.24
1441 2587 5.643379 AAACCGTAACTACCATCGACTTA 57.357 39.130 0.00 0.00 0.00 2.24
1442 2588 5.643379 AACCGTAACTACCATCGACTTAA 57.357 39.130 0.00 0.00 0.00 1.85
1443 2589 5.841957 ACCGTAACTACCATCGACTTAAT 57.158 39.130 0.00 0.00 0.00 1.40
1444 2590 6.212888 ACCGTAACTACCATCGACTTAATT 57.787 37.500 0.00 0.00 0.00 1.40
1445 2591 6.633856 ACCGTAACTACCATCGACTTAATTT 58.366 36.000 0.00 0.00 0.00 1.82
1446 2592 7.099120 ACCGTAACTACCATCGACTTAATTTT 58.901 34.615 0.00 0.00 0.00 1.82
1447 2593 7.276438 ACCGTAACTACCATCGACTTAATTTTC 59.724 37.037 0.00 0.00 0.00 2.29
1448 2594 7.254218 CCGTAACTACCATCGACTTAATTTTCC 60.254 40.741 0.00 0.00 0.00 3.13
1449 2595 7.276218 CGTAACTACCATCGACTTAATTTTCCA 59.724 37.037 0.00 0.00 0.00 3.53
1567 2715 7.585286 TGCGAGTACTTTTATATTCGTTTGT 57.415 32.000 0.00 0.00 36.84 2.83
1640 2788 4.619973 GATAATGAGGCTGAGAGAGTGTG 58.380 47.826 0.00 0.00 0.00 3.82
1641 2789 1.193323 ATGAGGCTGAGAGAGTGTGG 58.807 55.000 0.00 0.00 0.00 4.17
1642 2790 0.178950 TGAGGCTGAGAGAGTGTGGT 60.179 55.000 0.00 0.00 0.00 4.16
1643 2791 0.246086 GAGGCTGAGAGAGTGTGGTG 59.754 60.000 0.00 0.00 0.00 4.17
1644 2792 0.470833 AGGCTGAGAGAGTGTGGTGT 60.471 55.000 0.00 0.00 0.00 4.16
1718 2866 0.030705 CTCCCCTTCCCCTCTCATCA 60.031 60.000 0.00 0.00 0.00 3.07
1725 2873 3.523564 CCTTCCCCTCTCATCACCTTTTA 59.476 47.826 0.00 0.00 0.00 1.52
1774 2923 4.477780 GACGTATGCTAGCTAGATTCACC 58.522 47.826 25.15 5.91 0.00 4.02
1791 2940 1.068127 CACCGCCACCACTAGTATACC 59.932 57.143 0.00 0.00 0.00 2.73
1815 2964 6.460537 CCGAGTATTTTTATAGGGGTTTTGGC 60.461 42.308 0.00 0.00 0.00 4.52
1830 2979 4.020662 GGTTTTGGCCTATTGATGGTTGAA 60.021 41.667 3.32 0.00 0.00 2.69
1831 2980 5.512232 GGTTTTGGCCTATTGATGGTTGAAA 60.512 40.000 3.32 0.00 0.00 2.69
1832 2981 4.799564 TTGGCCTATTGATGGTTGAAAC 57.200 40.909 3.32 0.00 0.00 2.78
1841 2994 4.414337 TGATGGTTGAAACAAAAAGGGG 57.586 40.909 0.00 0.00 0.00 4.79
1882 3035 4.396166 CCATGCGTTAATTTGGTCTTCTCT 59.604 41.667 0.00 0.00 0.00 3.10
1883 3036 5.447818 CCATGCGTTAATTTGGTCTTCTCTC 60.448 44.000 0.00 0.00 0.00 3.20
2037 3190 3.600388 GTTCATGACCAAGACGGAGATT 58.400 45.455 0.00 0.00 38.63 2.40
2097 3250 0.603975 AGAAGGCCGTCAAGAACAGC 60.604 55.000 21.26 0.00 0.00 4.40
2131 3284 3.615849 AACGTATTCCTATCGACCGAC 57.384 47.619 0.00 0.00 0.00 4.79
2152 3305 5.465724 CGACCCATAGCTTAATTTGTACTCC 59.534 44.000 0.00 0.00 0.00 3.85
2156 3309 5.998363 CCATAGCTTAATTTGTACTCCCTCC 59.002 44.000 0.00 0.00 0.00 4.30
2157 3310 4.138487 AGCTTAATTTGTACTCCCTCCG 57.862 45.455 0.00 0.00 0.00 4.63
2158 3311 3.518303 AGCTTAATTTGTACTCCCTCCGT 59.482 43.478 0.00 0.00 0.00 4.69
2159 3312 4.019591 AGCTTAATTTGTACTCCCTCCGTT 60.020 41.667 0.00 0.00 0.00 4.44
2161 3314 5.163784 GCTTAATTTGTACTCCCTCCGTTTC 60.164 44.000 0.00 0.00 0.00 2.78
2162 3315 2.443887 TTTGTACTCCCTCCGTTTCG 57.556 50.000 0.00 0.00 0.00 3.46
2164 3317 1.843368 TGTACTCCCTCCGTTTCGAT 58.157 50.000 0.00 0.00 0.00 3.59
2165 3318 2.173519 TGTACTCCCTCCGTTTCGATT 58.826 47.619 0.00 0.00 0.00 3.34
2166 3319 2.564062 TGTACTCCCTCCGTTTCGATTT 59.436 45.455 0.00 0.00 0.00 2.17
2167 3320 3.763360 TGTACTCCCTCCGTTTCGATTTA 59.237 43.478 0.00 0.00 0.00 1.40
2168 3321 3.242549 ACTCCCTCCGTTTCGATTTAC 57.757 47.619 0.00 0.00 0.00 2.01
2169 3322 2.830321 ACTCCCTCCGTTTCGATTTACT 59.170 45.455 0.00 0.00 0.00 2.24
2185 3338 7.484471 CGATTTACTCGTCGTAGTTTTAGTT 57.516 36.000 3.29 0.00 42.56 2.24
2186 3339 7.932526 CGATTTACTCGTCGTAGTTTTAGTTT 58.067 34.615 3.29 0.00 42.56 2.66
2187 3340 9.051027 CGATTTACTCGTCGTAGTTTTAGTTTA 57.949 33.333 3.29 0.00 42.56 2.01
2192 3345 7.932526 ACTCGTCGTAGTTTTAGTTTAATTCG 58.067 34.615 0.00 0.00 0.00 3.34
2194 3347 8.150300 TCGTCGTAGTTTTAGTTTAATTCGAG 57.850 34.615 0.00 0.00 0.00 4.04
2195 3348 7.271223 TCGTCGTAGTTTTAGTTTAATTCGAGG 59.729 37.037 0.00 0.00 0.00 4.63
2196 3349 7.461938 CGTCGTAGTTTTAGTTTAATTCGAGGG 60.462 40.741 0.00 0.00 0.00 4.30
2197 3350 7.542130 GTCGTAGTTTTAGTTTAATTCGAGGGA 59.458 37.037 0.00 0.00 0.00 4.20
2198 3351 7.756722 TCGTAGTTTTAGTTTAATTCGAGGGAG 59.243 37.037 0.00 0.00 0.00 4.30
2201 3411 8.999220 AGTTTTAGTTTAATTCGAGGGAGTAG 57.001 34.615 0.00 0.00 0.00 2.57
2234 3444 3.818773 CCCGTGGAAAACTCTACACATTT 59.181 43.478 0.00 0.00 33.62 2.32
2358 3569 8.980832 AAATCCATCTCCATATCCTAACTAGT 57.019 34.615 0.00 0.00 0.00 2.57
2422 3644 9.613957 CAGTGTATTGACTATTAAGATACTCCG 57.386 37.037 0.00 0.00 0.00 4.63
2434 3656 7.807977 TTAAGATACTCCGTCCGTAAACTAT 57.192 36.000 0.00 0.00 0.00 2.12
2444 3666 7.027161 TCCGTCCGTAAACTATTGTAAACTAC 58.973 38.462 0.00 0.00 0.00 2.73
2445 3667 6.806249 CCGTCCGTAAACTATTGTAAACTACA 59.194 38.462 0.00 0.00 36.79 2.74
2446 3668 7.201350 CCGTCCGTAAACTATTGTAAACTACAC 60.201 40.741 0.00 0.00 38.63 2.90
2447 3669 7.201350 CGTCCGTAAACTATTGTAAACTACACC 60.201 40.741 0.00 0.00 38.63 4.16
2448 3670 7.063426 GTCCGTAAACTATTGTAAACTACACCC 59.937 40.741 0.00 0.00 38.63 4.61
2449 3671 7.039082 TCCGTAAACTATTGTAAACTACACCCT 60.039 37.037 0.00 0.00 38.63 4.34
2450 3672 7.276438 CCGTAAACTATTGTAAACTACACCCTC 59.724 40.741 0.00 0.00 38.63 4.30
2451 3673 7.276438 CGTAAACTATTGTAAACTACACCCTCC 59.724 40.741 0.00 0.00 38.63 4.30
2452 3674 6.691255 AACTATTGTAAACTACACCCTCCA 57.309 37.500 0.00 0.00 38.63 3.86
2453 3675 6.886178 ACTATTGTAAACTACACCCTCCAT 57.114 37.500 0.00 0.00 38.63 3.41
2454 3676 6.885922 ACTATTGTAAACTACACCCTCCATC 58.114 40.000 0.00 0.00 38.63 3.51
2455 3677 6.672657 ACTATTGTAAACTACACCCTCCATCT 59.327 38.462 0.00 0.00 38.63 2.90
2456 3678 5.416271 TTGTAAACTACACCCTCCATCTC 57.584 43.478 0.00 0.00 38.63 2.75
2457 3679 4.422057 TGTAAACTACACCCTCCATCTCA 58.578 43.478 0.00 0.00 32.89 3.27
2458 3680 5.030147 TGTAAACTACACCCTCCATCTCAT 58.970 41.667 0.00 0.00 32.89 2.90
2459 3681 6.199376 TGTAAACTACACCCTCCATCTCATA 58.801 40.000 0.00 0.00 32.89 2.15
2460 3682 6.670464 TGTAAACTACACCCTCCATCTCATAA 59.330 38.462 0.00 0.00 32.89 1.90
2461 3683 6.831664 AAACTACACCCTCCATCTCATAAT 57.168 37.500 0.00 0.00 0.00 1.28
2462 3684 7.931015 AAACTACACCCTCCATCTCATAATA 57.069 36.000 0.00 0.00 0.00 0.98
2463 3685 8.511748 AAACTACACCCTCCATCTCATAATAT 57.488 34.615 0.00 0.00 0.00 1.28
2464 3686 9.615660 AAACTACACCCTCCATCTCATAATATA 57.384 33.333 0.00 0.00 0.00 0.86
2465 3687 9.615660 AACTACACCCTCCATCTCATAATATAA 57.384 33.333 0.00 0.00 0.00 0.98
2466 3688 9.261035 ACTACACCCTCCATCTCATAATATAAG 57.739 37.037 0.00 0.00 0.00 1.73
2467 3689 9.480861 CTACACCCTCCATCTCATAATATAAGA 57.519 37.037 0.00 0.00 0.00 2.10
2468 3690 8.742125 ACACCCTCCATCTCATAATATAAGAA 57.258 34.615 0.00 0.00 0.00 2.52
2469 3691 8.598041 ACACCCTCCATCTCATAATATAAGAAC 58.402 37.037 0.00 0.00 0.00 3.01
2470 3692 7.761704 CACCCTCCATCTCATAATATAAGAACG 59.238 40.741 0.00 0.00 0.00 3.95
2471 3693 7.455008 ACCCTCCATCTCATAATATAAGAACGT 59.545 37.037 0.00 0.00 0.00 3.99
2472 3694 8.314751 CCCTCCATCTCATAATATAAGAACGTT 58.685 37.037 0.00 0.00 0.00 3.99
2473 3695 9.712305 CCTCCATCTCATAATATAAGAACGTTT 57.288 33.333 0.46 0.00 0.00 3.60
2513 3735 9.639636 GTGTCAAAAACGTTTTTATATTTTGGG 57.360 29.630 32.12 19.25 39.94 4.12
2514 3736 9.595823 TGTCAAAAACGTTTTTATATTTTGGGA 57.404 25.926 32.12 20.87 39.94 4.37
2522 3744 9.635404 ACGTTTTTATATTTTGGGATAGATGGA 57.365 29.630 0.00 0.00 0.00 3.41
2580 3802 3.591023 GGAGTAGTTGAGAGTGAAAGCC 58.409 50.000 0.00 0.00 0.00 4.35
2583 3805 5.047235 GGAGTAGTTGAGAGTGAAAGCCTAA 60.047 44.000 0.00 0.00 0.00 2.69
2590 3812 5.967088 TGAGAGTGAAAGCCTAAGACATAC 58.033 41.667 0.00 0.00 0.00 2.39
2608 3830 5.656480 ACATACGTATGTGCATGTGAGTAA 58.344 37.500 34.29 0.00 44.66 2.24
2615 3837 7.434307 ACGTATGTGCATGTGAGTAAGTAATAC 59.566 37.037 0.00 0.00 34.52 1.89
2705 4054 3.328382 ACTAGTGTGTGTGTGTGTGTT 57.672 42.857 0.00 0.00 0.00 3.32
2723 4072 6.206634 TGTGTGTTTTTCTCCAATACTCATCC 59.793 38.462 0.00 0.00 0.00 3.51
2806 4155 6.006449 AGGATAGCTTTCTTCTGCTGAAAAA 58.994 36.000 7.48 9.50 40.08 1.94
2829 4178 8.630054 AAAACTAACAATACCTTGATGTGCTA 57.370 30.769 0.00 0.00 36.20 3.49
2880 4229 7.068962 AGGAGGTAGTTAAGTTTAGCTCTGATC 59.931 40.741 15.03 0.00 41.68 2.92
2939 4323 1.990563 CTATGACGTTGTGGGTCGAAC 59.009 52.381 0.00 0.00 37.22 3.95
2966 4350 8.956426 CCTACTAATCAATTCACTAGGCAAAAA 58.044 33.333 0.00 0.00 0.00 1.94
2978 4362 6.035843 CACTAGGCAAAAATAATGAATGCGT 58.964 36.000 0.00 0.00 37.88 5.24
2979 4363 6.197096 CACTAGGCAAAAATAATGAATGCGTC 59.803 38.462 0.00 0.00 37.88 5.19
3040 4424 2.032680 TACGGGTGCCATTTTAGAGC 57.967 50.000 0.00 0.00 0.00 4.09
3160 4544 8.594881 TCTTTCTAGAGATTTCAACAAGTGAC 57.405 34.615 0.00 0.00 35.39 3.67
3161 4545 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
3162 4546 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
3163 4547 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
3164 4548 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
3165 4549 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
3167 4551 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
3168 4552 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
3169 4553 7.375834 AGATTTCAACAAGTGACTACATACGA 58.624 34.615 0.00 0.00 35.39 3.43
3170 4554 7.870954 AGATTTCAACAAGTGACTACATACGAA 59.129 33.333 0.00 0.00 35.39 3.85
3171 4555 7.773864 TTTCAACAAGTGACTACATACGAAA 57.226 32.000 0.00 0.00 35.39 3.46
3172 4556 6.758593 TCAACAAGTGACTACATACGAAAC 57.241 37.500 0.00 0.00 0.00 2.78
3173 4557 6.274579 TCAACAAGTGACTACATACGAAACA 58.725 36.000 0.00 0.00 0.00 2.83
3174 4558 6.757478 TCAACAAGTGACTACATACGAAACAA 59.243 34.615 0.00 0.00 0.00 2.83
3175 4559 7.278203 TCAACAAGTGACTACATACGAAACAAA 59.722 33.333 0.00 0.00 0.00 2.83
3176 4560 7.542534 ACAAGTGACTACATACGAAACAAAA 57.457 32.000 0.00 0.00 0.00 2.44
3177 4561 7.976826 ACAAGTGACTACATACGAAACAAAAA 58.023 30.769 0.00 0.00 0.00 1.94
3178 4562 8.120465 ACAAGTGACTACATACGAAACAAAAAG 58.880 33.333 0.00 0.00 0.00 2.27
3179 4563 8.332464 CAAGTGACTACATACGAAACAAAAAGA 58.668 33.333 0.00 0.00 0.00 2.52
3180 4564 8.073355 AGTGACTACATACGAAACAAAAAGAG 57.927 34.615 0.00 0.00 0.00 2.85
3181 4565 7.709613 AGTGACTACATACGAAACAAAAAGAGT 59.290 33.333 0.00 0.00 0.00 3.24
3182 4566 7.792508 GTGACTACATACGAAACAAAAAGAGTG 59.207 37.037 0.00 0.00 0.00 3.51
3183 4567 7.707464 TGACTACATACGAAACAAAAAGAGTGA 59.293 33.333 0.00 0.00 0.00 3.41
3184 4568 8.428186 ACTACATACGAAACAAAAAGAGTGAA 57.572 30.769 0.00 0.00 0.00 3.18
3185 4569 9.052759 ACTACATACGAAACAAAAAGAGTGAAT 57.947 29.630 0.00 0.00 0.00 2.57
3186 4570 9.530129 CTACATACGAAACAAAAAGAGTGAATC 57.470 33.333 0.00 0.00 0.00 2.52
3187 4571 8.154649 ACATACGAAACAAAAAGAGTGAATCT 57.845 30.769 0.00 0.00 41.27 2.40
3188 4572 9.268268 ACATACGAAACAAAAAGAGTGAATCTA 57.732 29.630 0.00 0.00 37.23 1.98
3189 4573 9.530129 CATACGAAACAAAAAGAGTGAATCTAC 57.470 33.333 0.00 0.00 37.23 2.59
3190 4574 7.548196 ACGAAACAAAAAGAGTGAATCTACA 57.452 32.000 0.00 0.00 37.23 2.74
3191 4575 7.407337 ACGAAACAAAAAGAGTGAATCTACAC 58.593 34.615 0.00 0.00 37.23 2.90
3238 4622 8.234136 TCCGTATGTGATAGTCTATTTGAAGT 57.766 34.615 0.00 0.00 0.00 3.01
3239 4623 8.350722 TCCGTATGTGATAGTCTATTTGAAGTC 58.649 37.037 0.00 0.00 0.00 3.01
3240 4624 8.353684 CCGTATGTGATAGTCTATTTGAAGTCT 58.646 37.037 0.00 0.00 0.00 3.24
3241 4625 9.737427 CGTATGTGATAGTCTATTTGAAGTCTT 57.263 33.333 0.00 0.00 0.00 3.01
3269 4653 9.908152 AAAAAGACAAATATTTAGAAACGGAGG 57.092 29.630 0.00 0.00 0.00 4.30
3270 4654 8.857694 AAAGACAAATATTTAGAAACGGAGGA 57.142 30.769 0.00 0.00 0.00 3.71
3271 4655 8.494016 AAGACAAATATTTAGAAACGGAGGAG 57.506 34.615 0.00 0.00 0.00 3.69
3272 4656 7.621796 AGACAAATATTTAGAAACGGAGGAGT 58.378 34.615 0.00 0.00 0.00 3.85
3273 4657 8.755977 AGACAAATATTTAGAAACGGAGGAGTA 58.244 33.333 0.00 0.00 0.00 2.59
3274 4658 8.943909 ACAAATATTTAGAAACGGAGGAGTAG 57.056 34.615 0.00 0.00 0.00 2.57
3275 4659 8.537858 ACAAATATTTAGAAACGGAGGAGTAGT 58.462 33.333 0.00 0.00 0.00 2.73
3278 4662 5.904362 TTTAGAAACGGAGGAGTAGTACC 57.096 43.478 0.00 0.00 0.00 3.34
3279 4663 3.735720 AGAAACGGAGGAGTAGTACCT 57.264 47.619 0.00 0.00 40.80 3.08
3280 4664 4.851639 AGAAACGGAGGAGTAGTACCTA 57.148 45.455 0.00 0.00 37.93 3.08
3281 4665 5.184892 AGAAACGGAGGAGTAGTACCTAA 57.815 43.478 0.00 0.00 37.93 2.69
3282 4666 4.946772 AGAAACGGAGGAGTAGTACCTAAC 59.053 45.833 0.00 0.00 37.93 2.34
3283 4667 4.582973 AACGGAGGAGTAGTACCTAACT 57.417 45.455 0.00 0.00 42.62 2.24
3284 4668 4.582973 ACGGAGGAGTAGTACCTAACTT 57.417 45.455 0.00 0.00 39.80 2.66
3285 4669 4.268359 ACGGAGGAGTAGTACCTAACTTG 58.732 47.826 0.00 0.00 39.80 3.16
3286 4670 4.018960 ACGGAGGAGTAGTACCTAACTTGA 60.019 45.833 0.00 0.00 39.80 3.02
3287 4671 4.335037 CGGAGGAGTAGTACCTAACTTGAC 59.665 50.000 0.00 0.00 39.80 3.18
3288 4672 5.259632 GGAGGAGTAGTACCTAACTTGACA 58.740 45.833 0.00 0.00 39.80 3.58
3289 4673 5.713861 GGAGGAGTAGTACCTAACTTGACAA 59.286 44.000 0.00 0.00 39.80 3.18
3290 4674 6.380560 GGAGGAGTAGTACCTAACTTGACAAT 59.619 42.308 0.00 0.00 39.80 2.71
3291 4675 7.559170 GGAGGAGTAGTACCTAACTTGACAATA 59.441 40.741 0.00 0.00 39.80 1.90
3292 4676 9.134055 GAGGAGTAGTACCTAACTTGACAATAT 57.866 37.037 0.00 0.00 39.80 1.28
3371 4762 4.421058 CATGGATGAATGAAGTGTTGCAG 58.579 43.478 0.00 0.00 0.00 4.41
3379 4770 9.229784 GATGAATGAAGTGTTGCAGTTATATTG 57.770 33.333 0.00 0.00 0.00 1.90
3600 4994 1.957186 GTACAACGACTTGCCGGCA 60.957 57.895 29.03 29.03 0.00 5.69
3627 5021 2.265904 GCCGACCACTCAAAACCCC 61.266 63.158 0.00 0.00 0.00 4.95
3771 5165 1.446272 CGTCGACAAGGGGCTTCTC 60.446 63.158 17.16 0.00 0.00 2.87
3872 5266 8.603242 ATTAGGTACTTAATTACTTGGATGCG 57.397 34.615 4.49 0.00 41.75 4.73
3928 5332 6.543735 AGAAGAATAGGGTAATTATGGTGGC 58.456 40.000 0.00 0.00 0.00 5.01
3970 5374 7.931578 ACGATGTGGTTAATTATTTCTTGGA 57.068 32.000 0.00 0.00 0.00 3.53
3971 5375 7.985476 ACGATGTGGTTAATTATTTCTTGGAG 58.015 34.615 0.00 0.00 0.00 3.86
3972 5376 6.912591 CGATGTGGTTAATTATTTCTTGGAGC 59.087 38.462 0.00 0.00 0.00 4.70
3973 5377 6.189677 TGTGGTTAATTATTTCTTGGAGCG 57.810 37.500 0.00 0.00 0.00 5.03
3974 5378 5.708230 TGTGGTTAATTATTTCTTGGAGCGT 59.292 36.000 0.00 0.00 0.00 5.07
3975 5379 6.207810 TGTGGTTAATTATTTCTTGGAGCGTT 59.792 34.615 0.00 0.00 0.00 4.84
3976 5380 6.526674 GTGGTTAATTATTTCTTGGAGCGTTG 59.473 38.462 0.00 0.00 0.00 4.10
3977 5381 5.515270 GGTTAATTATTTCTTGGAGCGTTGC 59.485 40.000 0.00 0.00 0.00 4.17
3978 5382 6.322491 GTTAATTATTTCTTGGAGCGTTGCT 58.678 36.000 0.00 0.00 43.88 3.91
3979 5383 7.414762 GGTTAATTATTTCTTGGAGCGTTGCTA 60.415 37.037 0.00 0.00 39.88 3.49
3980 5384 4.939509 TTATTTCTTGGAGCGTTGCTAC 57.060 40.909 0.00 0.00 39.88 3.58
3984 5388 2.732016 TGGAGCGTTGCTACACGT 59.268 55.556 0.00 0.00 42.40 4.49
3985 5389 1.958323 TGGAGCGTTGCTACACGTA 59.042 52.632 0.00 0.00 42.40 3.57
3986 5390 0.528924 TGGAGCGTTGCTACACGTAT 59.471 50.000 0.00 0.00 42.40 3.06
3987 5391 0.921347 GGAGCGTTGCTACACGTATG 59.079 55.000 0.00 0.00 39.71 2.39
3988 5392 1.468565 GGAGCGTTGCTACACGTATGA 60.469 52.381 0.00 0.00 39.71 2.15
3989 5393 1.582502 GAGCGTTGCTACACGTATGAC 59.417 52.381 0.00 0.00 39.88 3.06
3990 5394 1.068125 AGCGTTGCTACACGTATGACA 60.068 47.619 0.00 0.00 42.43 3.58
3991 5395 1.320555 GCGTTGCTACACGTATGACAG 59.679 52.381 0.00 0.00 42.43 3.51
3992 5396 2.592194 CGTTGCTACACGTATGACAGT 58.408 47.619 0.00 0.00 35.34 3.55
3993 5397 3.750512 CGTTGCTACACGTATGACAGTA 58.249 45.455 0.00 0.00 35.34 2.74
3994 5398 4.348656 CGTTGCTACACGTATGACAGTAT 58.651 43.478 0.00 0.00 35.34 2.12
3995 5399 4.796830 CGTTGCTACACGTATGACAGTATT 59.203 41.667 0.00 0.00 35.34 1.89
3996 5400 5.287752 CGTTGCTACACGTATGACAGTATTT 59.712 40.000 0.00 0.00 35.34 1.40
3997 5401 6.466812 GTTGCTACACGTATGACAGTATTTG 58.533 40.000 0.00 0.00 0.00 2.32
3998 5402 5.716094 TGCTACACGTATGACAGTATTTGT 58.284 37.500 0.00 0.00 44.55 2.83
3999 5403 6.854778 TGCTACACGTATGACAGTATTTGTA 58.145 36.000 0.00 0.00 41.05 2.41
4000 5404 6.748658 TGCTACACGTATGACAGTATTTGTAC 59.251 38.462 0.00 0.00 41.05 2.90
4001 5405 6.075728 GCTACACGTATGACAGTATTTGTACG 60.076 42.308 0.00 0.00 42.25 3.67
4002 5406 5.941733 ACACGTATGACAGTATTTGTACGA 58.058 37.500 8.95 0.00 40.15 3.43
4003 5407 6.558009 ACACGTATGACAGTATTTGTACGAT 58.442 36.000 8.95 0.00 40.15 3.73
4004 5408 7.031372 ACACGTATGACAGTATTTGTACGATT 58.969 34.615 8.95 0.00 40.15 3.34
4005 5409 7.543172 ACACGTATGACAGTATTTGTACGATTT 59.457 33.333 8.95 0.00 40.15 2.17
4006 5410 8.377681 CACGTATGACAGTATTTGTACGATTTT 58.622 33.333 8.95 0.00 40.15 1.82
4007 5411 8.928733 ACGTATGACAGTATTTGTACGATTTTT 58.071 29.630 8.95 0.00 40.15 1.94
4008 5412 9.194716 CGTATGACAGTATTTGTACGATTTTTG 57.805 33.333 0.00 0.00 40.15 2.44
4012 5416 8.215792 TGACAGTATTTGTACGATTTTTGTACG 58.784 33.333 0.00 0.00 44.00 3.67
4013 5417 8.296799 ACAGTATTTGTACGATTTTTGTACGA 57.703 30.769 0.00 0.00 44.00 3.43
4014 5418 8.763356 ACAGTATTTGTACGATTTTTGTACGAA 58.237 29.630 9.21 9.21 45.44 3.85
4015 5419 9.246423 CAGTATTTGTACGATTTTTGTACGAAG 57.754 33.333 11.51 0.00 44.90 3.79
4016 5420 8.981647 AGTATTTGTACGATTTTTGTACGAAGT 58.018 29.630 11.51 0.00 44.90 3.01
4026 5430 4.445832 TACGAAGTAGCAGGGCCA 57.554 55.556 6.18 0.00 45.11 5.36
4027 5431 1.895238 TACGAAGTAGCAGGGCCAC 59.105 57.895 6.18 0.00 45.11 5.01
4028 5432 1.610554 TACGAAGTAGCAGGGCCACC 61.611 60.000 6.18 0.00 45.11 4.61
4029 5433 2.125106 GAAGTAGCAGGGCCACCG 60.125 66.667 6.18 0.00 43.47 4.94
4030 5434 2.928396 AAGTAGCAGGGCCACCGT 60.928 61.111 6.18 0.00 43.47 4.83
4031 5435 2.465055 GAAGTAGCAGGGCCACCGTT 62.465 60.000 6.18 0.00 43.47 4.44
4032 5436 2.746277 GTAGCAGGGCCACCGTTG 60.746 66.667 6.18 0.00 43.47 4.10
4033 5437 2.925706 TAGCAGGGCCACCGTTGA 60.926 61.111 6.18 0.00 43.47 3.18
4034 5438 2.297895 TAGCAGGGCCACCGTTGAT 61.298 57.895 6.18 0.00 43.47 2.57
4035 5439 2.252072 TAGCAGGGCCACCGTTGATC 62.252 60.000 6.18 0.00 43.47 2.92
4036 5440 2.350895 CAGGGCCACCGTTGATCA 59.649 61.111 6.18 0.00 43.47 2.92
4037 5441 1.303236 CAGGGCCACCGTTGATCAA 60.303 57.895 6.18 3.38 43.47 2.57
4038 5442 1.303317 AGGGCCACCGTTGATCAAC 60.303 57.895 25.68 25.68 43.47 3.18
4047 5451 2.543578 GTTGATCAACGCTGGCTCA 58.456 52.632 22.09 0.00 0.00 4.26
4048 5452 0.874390 GTTGATCAACGCTGGCTCAA 59.126 50.000 22.09 2.05 0.00 3.02
4049 5453 1.135859 GTTGATCAACGCTGGCTCAAG 60.136 52.381 22.09 0.00 30.31 3.02
4050 5454 0.674581 TGATCAACGCTGGCTCAAGG 60.675 55.000 0.00 0.00 0.00 3.61
4051 5455 0.674895 GATCAACGCTGGCTCAAGGT 60.675 55.000 0.00 0.00 0.00 3.50
4052 5456 0.957395 ATCAACGCTGGCTCAAGGTG 60.957 55.000 0.00 0.00 0.00 4.00
4053 5457 2.281761 AACGCTGGCTCAAGGTGG 60.282 61.111 0.00 0.00 0.00 4.61
4054 5458 3.850098 AACGCTGGCTCAAGGTGGG 62.850 63.158 0.00 0.00 0.00 4.61
4055 5459 4.335647 CGCTGGCTCAAGGTGGGT 62.336 66.667 0.00 0.00 0.00 4.51
4056 5460 2.116125 GCTGGCTCAAGGTGGGTT 59.884 61.111 0.00 0.00 0.00 4.11
4057 5461 1.973812 GCTGGCTCAAGGTGGGTTC 60.974 63.158 0.00 0.00 0.00 3.62
4058 5462 1.455849 CTGGCTCAAGGTGGGTTCA 59.544 57.895 0.00 0.00 0.00 3.18
4059 5463 0.890996 CTGGCTCAAGGTGGGTTCAC 60.891 60.000 0.00 0.00 42.91 3.18
4060 5464 1.966451 GGCTCAAGGTGGGTTCACG 60.966 63.158 0.00 0.00 44.50 4.35
4061 5465 1.966451 GCTCAAGGTGGGTTCACGG 60.966 63.158 0.00 0.00 44.50 4.94
4062 5466 1.450211 CTCAAGGTGGGTTCACGGT 59.550 57.895 0.00 0.00 44.50 4.83
4063 5467 0.884704 CTCAAGGTGGGTTCACGGTG 60.885 60.000 0.56 0.56 44.50 4.94
4064 5468 1.896660 CAAGGTGGGTTCACGGTGG 60.897 63.158 8.50 0.00 44.50 4.61
4065 5469 2.073716 AAGGTGGGTTCACGGTGGA 61.074 57.895 8.50 0.00 44.50 4.02
4066 5470 1.423794 AAGGTGGGTTCACGGTGGAT 61.424 55.000 8.50 0.00 44.50 3.41
4067 5471 1.074248 GGTGGGTTCACGGTGGATT 59.926 57.895 8.50 0.00 44.50 3.01
4068 5472 0.325602 GGTGGGTTCACGGTGGATTA 59.674 55.000 8.50 0.00 44.50 1.75
4069 5473 1.445871 GTGGGTTCACGGTGGATTAC 58.554 55.000 8.50 2.19 33.87 1.89
4070 5474 0.037139 TGGGTTCACGGTGGATTACG 60.037 55.000 8.50 0.00 0.00 3.18
4071 5475 1.363885 GGGTTCACGGTGGATTACGC 61.364 60.000 8.50 6.60 0.00 4.42
4072 5476 0.390735 GGTTCACGGTGGATTACGCT 60.391 55.000 8.50 0.00 0.00 5.07
4073 5477 1.135024 GGTTCACGGTGGATTACGCTA 60.135 52.381 8.50 0.00 0.00 4.26
4074 5478 2.482490 GGTTCACGGTGGATTACGCTAT 60.482 50.000 8.50 0.00 0.00 2.97
4075 5479 2.787601 TCACGGTGGATTACGCTATC 57.212 50.000 8.50 0.00 0.00 2.08
4076 5480 1.002142 TCACGGTGGATTACGCTATCG 60.002 52.381 8.50 0.00 42.43 2.92
4088 5492 2.410785 CGCTATCGTACCAAATCGGA 57.589 50.000 0.00 0.00 38.63 4.55
4089 5493 2.049228 CGCTATCGTACCAAATCGGAC 58.951 52.381 0.00 0.00 38.63 4.79
4090 5494 2.049228 GCTATCGTACCAAATCGGACG 58.951 52.381 0.00 0.00 38.73 4.79
4091 5495 2.287188 GCTATCGTACCAAATCGGACGA 60.287 50.000 0.00 0.00 45.20 4.20
4092 5496 2.486951 ATCGTACCAAATCGGACGAG 57.513 50.000 2.23 0.00 44.72 4.18
4093 5497 0.179156 TCGTACCAAATCGGACGAGC 60.179 55.000 0.00 0.00 40.25 5.03
4094 5498 0.179145 CGTACCAAATCGGACGAGCT 60.179 55.000 0.00 0.00 39.32 4.09
4095 5499 1.734707 CGTACCAAATCGGACGAGCTT 60.735 52.381 0.00 0.00 39.32 3.74
4096 5500 2.344025 GTACCAAATCGGACGAGCTTT 58.656 47.619 0.00 0.00 38.63 3.51
4097 5501 1.439679 ACCAAATCGGACGAGCTTTC 58.560 50.000 0.00 0.00 38.63 2.62
4098 5502 1.270625 ACCAAATCGGACGAGCTTTCA 60.271 47.619 0.00 0.00 38.63 2.69
4099 5503 2.009774 CCAAATCGGACGAGCTTTCAT 58.990 47.619 0.00 0.00 36.56 2.57
4100 5504 2.030946 CCAAATCGGACGAGCTTTCATC 59.969 50.000 0.00 0.00 36.56 2.92
4101 5505 1.560923 AATCGGACGAGCTTTCATCG 58.439 50.000 0.00 0.00 45.54 3.84
4110 5514 2.791560 CGAGCTTTCATCGTATGTGAGG 59.208 50.000 0.00 0.00 35.48 3.86
4111 5515 2.541762 GAGCTTTCATCGTATGTGAGGC 59.458 50.000 0.00 0.00 0.00 4.70
4112 5516 2.093500 AGCTTTCATCGTATGTGAGGCA 60.093 45.455 0.00 0.00 32.51 4.75
4113 5517 2.677836 GCTTTCATCGTATGTGAGGCAA 59.322 45.455 0.00 0.00 0.00 4.52
4114 5518 3.313526 GCTTTCATCGTATGTGAGGCAAT 59.686 43.478 0.00 0.00 0.00 3.56
4115 5519 4.201950 GCTTTCATCGTATGTGAGGCAATT 60.202 41.667 0.00 0.00 0.00 2.32
4116 5520 5.484173 TTTCATCGTATGTGAGGCAATTC 57.516 39.130 0.00 0.00 0.00 2.17
4117 5521 3.466836 TCATCGTATGTGAGGCAATTCC 58.533 45.455 0.00 0.00 0.00 3.01
4118 5522 2.325583 TCGTATGTGAGGCAATTCCC 57.674 50.000 0.00 0.00 34.51 3.97
4151 5559 7.825681 TGAACATGTCATTTACTGGTAATTGG 58.174 34.615 0.00 3.45 31.17 3.16
4152 5560 6.207691 ACATGTCATTTACTGGTAATTGGC 57.792 37.500 10.92 10.92 33.87 4.52
4158 5566 8.682710 TGTCATTTACTGGTAATTGGCTAAATC 58.317 33.333 15.85 0.00 34.19 2.17
4187 5600 6.656693 ACTGTGTAAGTAGTACTCCGTACAAT 59.343 38.462 14.09 3.16 41.03 2.71
4333 5748 7.291411 ACTAGTCATCAACCCATACATCTAC 57.709 40.000 0.00 0.00 0.00 2.59
4334 5749 6.839134 ACTAGTCATCAACCCATACATCTACA 59.161 38.462 0.00 0.00 0.00 2.74
4360 5778 4.064388 GCTAGTAACTACTACTCCCTCCG 58.936 52.174 0.00 0.00 40.21 4.63
4361 5779 4.444164 GCTAGTAACTACTACTCCCTCCGT 60.444 50.000 0.00 0.00 40.21 4.69
4362 5780 4.582973 AGTAACTACTACTCCCTCCGTT 57.417 45.455 0.00 0.00 35.90 4.44
4364 5782 3.735720 AACTACTACTCCCTCCGTTCT 57.264 47.619 0.00 0.00 0.00 3.01
4365 5783 3.735720 ACTACTACTCCCTCCGTTCTT 57.264 47.619 0.00 0.00 0.00 2.52
4366 5784 4.851639 ACTACTACTCCCTCCGTTCTTA 57.148 45.455 0.00 0.00 0.00 2.10
4369 5787 6.193504 ACTACTACTCCCTCCGTTCTTAAAT 58.806 40.000 0.00 0.00 0.00 1.40
4371 5789 8.003629 ACTACTACTCCCTCCGTTCTTAAATAT 58.996 37.037 0.00 0.00 0.00 1.28
4372 5790 7.672122 ACTACTCCCTCCGTTCTTAAATATT 57.328 36.000 0.00 0.00 0.00 1.28
4373 5791 8.087303 ACTACTCCCTCCGTTCTTAAATATTT 57.913 34.615 5.89 5.89 0.00 1.40
4374 5792 7.985752 ACTACTCCCTCCGTTCTTAAATATTTG 59.014 37.037 11.05 0.00 0.00 2.32
4375 5793 6.718294 ACTCCCTCCGTTCTTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
4376 5794 6.822170 ACTCCCTCCGTTCTTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
4377 5795 6.954232 TCCCTCCGTTCTTAAATATTTGTCT 58.046 36.000 11.05 0.00 0.00 3.41
4378 5796 7.399634 TCCCTCCGTTCTTAAATATTTGTCTT 58.600 34.615 11.05 0.00 0.00 3.01
4379 5797 7.886446 TCCCTCCGTTCTTAAATATTTGTCTTT 59.114 33.333 11.05 0.00 0.00 2.52
4380 5798 8.182227 CCCTCCGTTCTTAAATATTTGTCTTTC 58.818 37.037 11.05 0.00 0.00 2.62
4381 5799 8.947115 CCTCCGTTCTTAAATATTTGTCTTTCT 58.053 33.333 11.05 0.00 0.00 2.52
4396 5814 7.969536 TTGTCTTTCTAGAGACTTCAAATGG 57.030 36.000 12.02 0.00 44.99 3.16
4397 5815 7.303182 TGTCTTTCTAGAGACTTCAAATGGA 57.697 36.000 12.02 0.00 44.99 3.41
4398 5816 7.155328 TGTCTTTCTAGAGACTTCAAATGGAC 58.845 38.462 12.02 1.55 44.99 4.02
4399 5817 7.015682 TGTCTTTCTAGAGACTTCAAATGGACT 59.984 37.037 12.02 0.00 44.99 3.85
4400 5818 8.524487 GTCTTTCTAGAGACTTCAAATGGACTA 58.476 37.037 5.16 0.00 42.18 2.59
4402 5820 6.777213 TCTAGAGACTTCAAATGGACTACC 57.223 41.667 0.00 0.00 0.00 3.18
4446 5864 9.774742 GACATATTTTAAAGTGTGGATTCACTC 57.225 33.333 5.55 1.32 46.25 3.51
4447 5865 9.295825 ACATATTTTAAAGTGTGGATTCACTCA 57.704 29.630 5.55 0.00 46.25 3.41
4452 5870 8.870160 TTTAAAGTGTGGATTCACTCATTTTG 57.130 30.769 5.55 0.00 46.25 2.44
4453 5871 4.510038 AGTGTGGATTCACTCATTTTGC 57.490 40.909 5.55 0.00 44.07 3.68
4454 5872 4.147321 AGTGTGGATTCACTCATTTTGCT 58.853 39.130 5.55 0.00 44.07 3.91
4455 5873 4.217118 AGTGTGGATTCACTCATTTTGCTC 59.783 41.667 5.55 0.00 44.07 4.26
4456 5874 3.507233 TGTGGATTCACTCATTTTGCTCC 59.493 43.478 5.55 0.00 43.94 4.70
4457 5875 2.749076 TGGATTCACTCATTTTGCTCCG 59.251 45.455 0.00 0.00 0.00 4.63
4458 5876 2.749621 GGATTCACTCATTTTGCTCCGT 59.250 45.455 0.00 0.00 0.00 4.69
4459 5877 3.938963 GGATTCACTCATTTTGCTCCGTA 59.061 43.478 0.00 0.00 0.00 4.02
4460 5878 4.576463 GGATTCACTCATTTTGCTCCGTAT 59.424 41.667 0.00 0.00 0.00 3.06
4461 5879 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
4462 5880 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
4463 5881 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
4464 5882 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
4465 5883 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
4466 5884 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
4467 5885 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
4468 5886 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
4469 5887 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
4470 5888 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
4471 5889 5.648178 TTTGCTCCGTATGTAGTCACTTA 57.352 39.130 0.00 0.00 0.00 2.24
4472 5890 5.847111 TTGCTCCGTATGTAGTCACTTAT 57.153 39.130 0.00 0.00 0.00 1.73
4473 5891 5.847111 TGCTCCGTATGTAGTCACTTATT 57.153 39.130 0.00 0.00 0.00 1.40
4474 5892 5.588240 TGCTCCGTATGTAGTCACTTATTG 58.412 41.667 0.00 0.00 0.00 1.90
4475 5893 5.358725 TGCTCCGTATGTAGTCACTTATTGA 59.641 40.000 0.00 0.00 0.00 2.57
4476 5894 6.127563 TGCTCCGTATGTAGTCACTTATTGAA 60.128 38.462 0.00 0.00 35.39 2.69
4477 5895 6.755141 GCTCCGTATGTAGTCACTTATTGAAA 59.245 38.462 0.00 0.00 35.39 2.69
4478 5896 7.438459 GCTCCGTATGTAGTCACTTATTGAAAT 59.562 37.037 0.00 0.00 35.39 2.17
4479 5897 8.867112 TCCGTATGTAGTCACTTATTGAAATC 57.133 34.615 0.00 0.00 35.39 2.17
4480 5898 8.692710 TCCGTATGTAGTCACTTATTGAAATCT 58.307 33.333 0.00 0.00 35.39 2.40
4481 5899 9.314321 CCGTATGTAGTCACTTATTGAAATCTT 57.686 33.333 0.00 0.00 35.39 2.40
4509 5927 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
4526 5944 6.462552 ACGGAGGGAGTAGTATTTAGTTTC 57.537 41.667 0.00 0.00 0.00 2.78
4529 5947 6.405176 CGGAGGGAGTAGTATTTAGTTTCGTT 60.405 42.308 0.00 0.00 0.00 3.85
4571 5989 5.669164 TGGGCAGGATTTTAACCAAATAC 57.331 39.130 0.00 0.00 35.02 1.89
4574 5992 6.071051 TGGGCAGGATTTTAACCAAATACTTC 60.071 38.462 0.00 0.00 42.77 3.01
4586 6004 7.797121 AACCAAATACTTCATCCCAAATTCT 57.203 32.000 0.00 0.00 0.00 2.40
4603 6021 9.722056 CCCAAATTCTATTTTTAGAAGATCACG 57.278 33.333 0.00 0.00 39.19 4.35
4614 6032 2.300152 AGAAGATCACGTGCTTCCTCAA 59.700 45.455 23.83 2.53 41.01 3.02
4632 6050 5.948758 TCCTCAATATATTGTGTGTTGCCAA 59.051 36.000 21.89 1.58 38.84 4.52
4633 6051 6.606796 TCCTCAATATATTGTGTGTTGCCAAT 59.393 34.615 21.89 0.00 38.84 3.16
4698 6116 5.818887 TCATGTTGAGGATTTCTTGATGGA 58.181 37.500 0.00 0.00 0.00 3.41
4699 6117 6.429151 TCATGTTGAGGATTTCTTGATGGAT 58.571 36.000 0.00 0.00 0.00 3.41
4751 6169 9.668497 AGTAACCTTTTGTTATAAGGATCTCAC 57.332 33.333 8.53 0.17 44.01 3.51
4849 6267 4.695455 TGGATTTTGCGTTTGGTTTTGAAA 59.305 33.333 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 3.008835 CAGGAAATGGAGGAGATGCAA 57.991 47.619 0.00 0.00 30.55 4.08
60 61 0.534203 GACACCGACAAGCCAGGAAA 60.534 55.000 0.00 0.00 0.00 3.13
172 182 1.373748 GCTGGACACGCGAACCTTA 60.374 57.895 15.93 0.00 0.00 2.69
206 217 2.750815 GGTCGAAGAACCACCATCG 58.249 57.895 0.00 0.00 39.11 3.84
272 285 2.325484 TCTCCCTGGCTATATTTGCGA 58.675 47.619 0.00 0.00 0.00 5.10
274 287 4.460731 GGATTTCTCCCTGGCTATATTTGC 59.539 45.833 0.00 0.00 35.28 3.68
315 329 4.988598 AGTGTCGCCGTTGCCAGG 62.989 66.667 0.00 0.00 0.00 4.45
507 566 2.627945 GTGTGAAGTCAGACAACCACA 58.372 47.619 14.76 14.76 39.62 4.17
527 1177 1.608590 AGATGCAAGTCCAAACCAACG 59.391 47.619 0.00 0.00 0.00 4.10
548 1198 5.892524 ACACACCTAAACCCACTAACTAA 57.107 39.130 0.00 0.00 0.00 2.24
565 1223 1.917303 CCGAACAAGCAAACAACACAC 59.083 47.619 0.00 0.00 0.00 3.82
600 1258 5.278758 CGGTGCCCAAAAATAGAAAAGAGAA 60.279 40.000 0.00 0.00 0.00 2.87
727 1409 3.119743 TGAATTTGCTCTCAGCGGATTTG 60.120 43.478 0.00 0.00 46.26 2.32
730 1412 2.408271 TGAATTTGCTCTCAGCGGAT 57.592 45.000 0.00 0.00 46.26 4.18
731 1413 2.183478 TTGAATTTGCTCTCAGCGGA 57.817 45.000 0.00 0.00 46.26 5.54
732 1414 3.498927 AATTGAATTTGCTCTCAGCGG 57.501 42.857 0.00 0.00 46.26 5.52
733 1415 4.095483 ACCTAATTGAATTTGCTCTCAGCG 59.905 41.667 0.00 0.00 46.26 5.18
734 1416 5.573337 ACCTAATTGAATTTGCTCTCAGC 57.427 39.130 0.00 0.00 42.82 4.26
737 1419 9.670719 GCTAATTACCTAATTGAATTTGCTCTC 57.329 33.333 0.00 0.00 37.90 3.20
738 1420 9.189156 TGCTAATTACCTAATTGAATTTGCTCT 57.811 29.630 16.23 0.00 40.02 4.09
739 1421 9.801873 TTGCTAATTACCTAATTGAATTTGCTC 57.198 29.630 16.23 0.00 40.02 4.26
818 1500 1.451936 GGGAGGATAGGTGCGCATT 59.548 57.895 15.91 8.14 0.00 3.56
819 1501 2.520536 GGGGAGGATAGGTGCGCAT 61.521 63.158 15.91 0.00 0.00 4.73
820 1502 3.161450 GGGGAGGATAGGTGCGCA 61.161 66.667 5.66 5.66 0.00 6.09
821 1503 3.942439 GGGGGAGGATAGGTGCGC 61.942 72.222 0.00 0.00 0.00 6.09
847 1529 3.054166 TCGAACGTGTGGTTTGTCTATG 58.946 45.455 0.00 0.00 39.50 2.23
848 1530 3.243636 ACTCGAACGTGTGGTTTGTCTAT 60.244 43.478 0.00 0.00 39.50 1.98
866 1548 2.545322 GGGCCCTTTTATCGTCTACTCG 60.545 54.545 17.04 0.00 0.00 4.18
873 1555 1.618616 CCTTTGGGGCCCTTTTATCGT 60.619 52.381 25.93 0.00 0.00 3.73
1233 2379 4.506255 CCCTTCCATGGACCCCGC 62.506 72.222 15.91 0.00 0.00 6.13
1354 2500 1.850441 CCGACGGTGAATTAAGCTACG 59.150 52.381 5.48 0.00 0.00 3.51
1371 2517 1.326951 TGAACATGGCGAGGATCCGA 61.327 55.000 5.98 0.00 0.00 4.55
1564 2712 8.631676 TGACGTGCTATTAACGAATAATACAA 57.368 30.769 0.00 0.00 43.68 2.41
1567 2715 8.153724 CGATGACGTGCTATTAACGAATAATA 57.846 34.615 0.00 0.00 43.68 0.98
1640 2788 1.752683 TAACCACACAACACCACACC 58.247 50.000 0.00 0.00 0.00 4.16
1641 2789 4.379339 AATTAACCACACAACACCACAC 57.621 40.909 0.00 0.00 0.00 3.82
1642 2790 4.748892 CAAATTAACCACACAACACCACA 58.251 39.130 0.00 0.00 0.00 4.17
1643 2791 3.553917 GCAAATTAACCACACAACACCAC 59.446 43.478 0.00 0.00 0.00 4.16
1644 2792 3.195610 TGCAAATTAACCACACAACACCA 59.804 39.130 0.00 0.00 0.00 4.17
1718 2866 5.872963 ACCTTATCGTGGACTTTAAAAGGT 58.127 37.500 0.00 0.00 40.39 3.50
1725 2873 7.754851 AATTAACAACCTTATCGTGGACTTT 57.245 32.000 0.00 0.00 0.00 2.66
1774 2923 1.266175 CTCGGTATACTAGTGGTGGCG 59.734 57.143 5.39 0.00 0.00 5.69
1791 2940 6.460537 GGCCAAAACCCCTATAAAAATACTCG 60.461 42.308 0.00 0.00 0.00 4.18
1815 2964 6.650390 CCCTTTTTGTTTCAACCATCAATAGG 59.350 38.462 0.00 0.00 0.00 2.57
1830 2979 4.470602 AGAGAAATCGTCCCCTTTTTGTT 58.529 39.130 0.00 0.00 0.00 2.83
1831 2980 4.072839 GAGAGAAATCGTCCCCTTTTTGT 58.927 43.478 0.00 0.00 0.00 2.83
1832 2981 4.327680 AGAGAGAAATCGTCCCCTTTTTG 58.672 43.478 0.00 0.00 0.00 2.44
1841 2994 0.647925 GGCGCAAGAGAGAAATCGTC 59.352 55.000 10.83 0.00 43.02 4.20
1882 3035 3.920446 TGTTAGCTCGCATTTGTACAGA 58.080 40.909 0.00 0.00 0.00 3.41
1883 3036 3.484229 GCTGTTAGCTCGCATTTGTACAG 60.484 47.826 0.00 0.00 38.45 2.74
2013 3166 0.948623 CCGTCTTGGTCATGAACGCA 60.949 55.000 6.21 0.00 0.00 5.24
2037 3190 2.494777 ATCCGTCCTCGAGGTGGTCA 62.495 60.000 31.13 20.49 39.71 4.02
2097 3250 3.639672 ATACGTTACCTTGGGAAAGGG 57.360 47.619 9.23 0.00 44.27 3.95
2131 3284 5.941788 AGGGAGTACAAATTAAGCTATGGG 58.058 41.667 0.00 0.00 0.00 4.00
2166 3319 9.051027 CGAATTAAACTAAAACTACGACGAGTA 57.949 33.333 0.00 0.00 0.00 2.59
2167 3320 7.803189 TCGAATTAAACTAAAACTACGACGAGT 59.197 33.333 0.00 0.00 0.00 4.18
2168 3321 8.150300 TCGAATTAAACTAAAACTACGACGAG 57.850 34.615 0.00 0.00 0.00 4.18
2169 3322 7.271223 CCTCGAATTAAACTAAAACTACGACGA 59.729 37.037 0.00 0.00 0.00 4.20
2171 3324 7.542130 TCCCTCGAATTAAACTAAAACTACGAC 59.458 37.037 0.00 0.00 0.00 4.34
2173 3326 7.543520 ACTCCCTCGAATTAAACTAAAACTACG 59.456 37.037 0.00 0.00 0.00 3.51
2174 3327 8.768957 ACTCCCTCGAATTAAACTAAAACTAC 57.231 34.615 0.00 0.00 0.00 2.73
2176 3329 8.039538 CCTACTCCCTCGAATTAAACTAAAACT 58.960 37.037 0.00 0.00 0.00 2.66
2177 3330 7.821359 ACCTACTCCCTCGAATTAAACTAAAAC 59.179 37.037 0.00 0.00 0.00 2.43
2178 3331 7.910584 ACCTACTCCCTCGAATTAAACTAAAA 58.089 34.615 0.00 0.00 0.00 1.52
2179 3332 7.486407 ACCTACTCCCTCGAATTAAACTAAA 57.514 36.000 0.00 0.00 0.00 1.85
2180 3333 7.201732 CGTACCTACTCCCTCGAATTAAACTAA 60.202 40.741 0.00 0.00 0.00 2.24
2181 3334 6.260936 CGTACCTACTCCCTCGAATTAAACTA 59.739 42.308 0.00 0.00 0.00 2.24
2183 3336 5.163612 ACGTACCTACTCCCTCGAATTAAAC 60.164 44.000 0.00 0.00 0.00 2.01
2184 3337 4.949856 ACGTACCTACTCCCTCGAATTAAA 59.050 41.667 0.00 0.00 0.00 1.52
2185 3338 4.526970 ACGTACCTACTCCCTCGAATTAA 58.473 43.478 0.00 0.00 0.00 1.40
2186 3339 4.156455 ACGTACCTACTCCCTCGAATTA 57.844 45.455 0.00 0.00 0.00 1.40
2187 3340 3.010200 ACGTACCTACTCCCTCGAATT 57.990 47.619 0.00 0.00 0.00 2.17
2190 3343 1.202417 CGTACGTACCTACTCCCTCGA 60.202 57.143 19.67 0.00 0.00 4.04
2192 3345 2.205911 GACGTACGTACCTACTCCCTC 58.794 57.143 22.87 0.00 0.00 4.30
2194 3347 1.300481 GGACGTACGTACCTACTCCC 58.700 60.000 22.87 11.81 0.00 4.30
2195 3348 1.300481 GGGACGTACGTACCTACTCC 58.700 60.000 37.17 23.68 45.54 3.85
2280 3490 8.143193 CAGCTAGGATATGGAGATCATTCATAC 58.857 40.741 0.00 0.00 37.30 2.39
2422 3644 7.063426 GGGTGTAGTTTACAATAGTTTACGGAC 59.937 40.741 0.00 0.00 40.93 4.79
2434 3656 4.841813 TGAGATGGAGGGTGTAGTTTACAA 59.158 41.667 0.00 0.00 40.93 2.41
2444 3666 7.761704 CGTTCTTATATTATGAGATGGAGGGTG 59.238 40.741 0.00 0.00 0.00 4.61
2445 3667 7.455008 ACGTTCTTATATTATGAGATGGAGGGT 59.545 37.037 0.00 0.00 0.00 4.34
2446 3668 7.841956 ACGTTCTTATATTATGAGATGGAGGG 58.158 38.462 0.00 0.00 0.00 4.30
2447 3669 9.712305 AAACGTTCTTATATTATGAGATGGAGG 57.288 33.333 0.00 0.00 0.00 4.30
2487 3709 9.639636 CCCAAAATATAAAAACGTTTTTGACAC 57.360 29.630 36.92 0.00 40.33 3.67
2488 3710 9.595823 TCCCAAAATATAAAAACGTTTTTGACA 57.404 25.926 36.92 25.32 40.33 3.58
2496 3718 9.635404 TCCATCTATCCCAAAATATAAAAACGT 57.365 29.630 0.00 0.00 0.00 3.99
2580 3802 5.977129 TCACATGCACATACGTATGTCTTAG 59.023 40.000 32.93 23.67 44.57 2.18
2583 3805 4.142160 ACTCACATGCACATACGTATGTCT 60.142 41.667 32.93 19.86 44.57 3.41
2590 3812 6.828502 ATTACTTACTCACATGCACATACG 57.171 37.500 0.00 0.00 0.00 3.06
2637 3862 6.832520 TGGTTTACATATTCAATGCACACT 57.167 33.333 0.00 0.00 0.00 3.55
2658 3883 4.712122 ACGGCAATTAGTTACCAAATGG 57.288 40.909 0.00 0.00 42.17 3.16
2705 4054 6.387192 TGAAGGGATGAGTATTGGAGAAAA 57.613 37.500 0.00 0.00 0.00 2.29
2723 4072 5.004440 CGTACTGTCATGTTCGTTATGAAGG 59.996 44.000 0.00 0.00 37.23 3.46
2766 4115 5.069251 AGCTATCCTAAAGCAGAATGTACGT 59.931 40.000 0.00 0.00 42.62 3.57
2768 4117 7.713073 AGAAAGCTATCCTAAAGCAGAATGTAC 59.287 37.037 0.00 0.00 42.62 2.90
2806 4155 8.512138 GTTTAGCACATCAAGGTATTGTTAGTT 58.488 33.333 0.00 0.00 37.68 2.24
2880 4229 2.662006 TCTTGCAGTGCACTAGCTAG 57.338 50.000 28.61 28.61 38.71 3.42
2939 4323 6.174720 TGCCTAGTGAATTGATTAGTAGGG 57.825 41.667 0.00 0.00 0.00 3.53
3026 4410 2.171003 AGGGTTGCTCTAAAATGGCAC 58.829 47.619 0.00 0.00 35.62 5.01
3029 4413 2.094026 GCCAAGGGTTGCTCTAAAATGG 60.094 50.000 0.00 0.00 0.00 3.16
3040 4424 0.458889 CGAATGCATGCCAAGGGTTG 60.459 55.000 16.68 0.00 0.00 3.77
3134 4518 9.213799 GTCACTTGTTGAAATCTCTAGAAAGAT 57.786 33.333 0.00 0.00 37.61 2.40
3135 4519 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
3136 4520 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
3137 4521 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
3138 4522 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
3139 4523 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
3140 4524 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
3141 4525 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
3142 4526 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
3143 4527 7.541091 TCGTATGTAGTCACTTGTTGAAATCTC 59.459 37.037 0.00 0.00 35.39 2.75
3144 4528 7.375834 TCGTATGTAGTCACTTGTTGAAATCT 58.624 34.615 0.00 0.00 35.39 2.40
3145 4529 7.576750 TCGTATGTAGTCACTTGTTGAAATC 57.423 36.000 0.00 0.00 35.39 2.17
3146 4530 7.956420 TTCGTATGTAGTCACTTGTTGAAAT 57.044 32.000 0.00 0.00 35.39 2.17
3147 4531 7.278203 TGTTTCGTATGTAGTCACTTGTTGAAA 59.722 33.333 0.00 0.00 35.39 2.69
3148 4532 6.757478 TGTTTCGTATGTAGTCACTTGTTGAA 59.243 34.615 0.00 0.00 35.39 2.69
3149 4533 6.274579 TGTTTCGTATGTAGTCACTTGTTGA 58.725 36.000 0.00 0.00 0.00 3.18
3150 4534 6.519353 TGTTTCGTATGTAGTCACTTGTTG 57.481 37.500 0.00 0.00 0.00 3.33
3151 4535 7.542534 TTTGTTTCGTATGTAGTCACTTGTT 57.457 32.000 0.00 0.00 0.00 2.83
3152 4536 7.542534 TTTTGTTTCGTATGTAGTCACTTGT 57.457 32.000 0.00 0.00 0.00 3.16
3153 4537 8.332464 TCTTTTTGTTTCGTATGTAGTCACTTG 58.668 33.333 0.00 0.00 0.00 3.16
3154 4538 8.428186 TCTTTTTGTTTCGTATGTAGTCACTT 57.572 30.769 0.00 0.00 0.00 3.16
3155 4539 7.709613 ACTCTTTTTGTTTCGTATGTAGTCACT 59.290 33.333 0.00 0.00 0.00 3.41
3156 4540 7.792508 CACTCTTTTTGTTTCGTATGTAGTCAC 59.207 37.037 0.00 0.00 0.00 3.67
3157 4541 7.707464 TCACTCTTTTTGTTTCGTATGTAGTCA 59.293 33.333 0.00 0.00 0.00 3.41
3158 4542 8.068893 TCACTCTTTTTGTTTCGTATGTAGTC 57.931 34.615 0.00 0.00 0.00 2.59
3159 4543 8.428186 TTCACTCTTTTTGTTTCGTATGTAGT 57.572 30.769 0.00 0.00 0.00 2.73
3160 4544 9.530129 GATTCACTCTTTTTGTTTCGTATGTAG 57.470 33.333 0.00 0.00 0.00 2.74
3161 4545 9.268268 AGATTCACTCTTTTTGTTTCGTATGTA 57.732 29.630 0.00 0.00 0.00 2.29
3162 4546 8.154649 AGATTCACTCTTTTTGTTTCGTATGT 57.845 30.769 0.00 0.00 0.00 2.29
3163 4547 9.530129 GTAGATTCACTCTTTTTGTTTCGTATG 57.470 33.333 0.00 0.00 35.28 2.39
3164 4548 9.268268 TGTAGATTCACTCTTTTTGTTTCGTAT 57.732 29.630 0.00 0.00 35.28 3.06
3165 4549 8.545420 GTGTAGATTCACTCTTTTTGTTTCGTA 58.455 33.333 0.00 0.00 35.28 3.43
3166 4550 7.280205 AGTGTAGATTCACTCTTTTTGTTTCGT 59.720 33.333 0.00 0.00 44.07 3.85
3167 4551 7.630924 AGTGTAGATTCACTCTTTTTGTTTCG 58.369 34.615 0.00 0.00 44.07 3.46
3168 4552 9.788960 AAAGTGTAGATTCACTCTTTTTGTTTC 57.211 29.630 0.00 0.00 46.25 2.78
3212 4596 8.861086 ACTTCAAATAGACTATCACATACGGAT 58.139 33.333 0.00 0.00 0.00 4.18
3213 4597 8.234136 ACTTCAAATAGACTATCACATACGGA 57.766 34.615 0.00 0.00 0.00 4.69
3214 4598 8.353684 AGACTTCAAATAGACTATCACATACGG 58.646 37.037 0.00 0.00 0.00 4.02
3215 4599 9.737427 AAGACTTCAAATAGACTATCACATACG 57.263 33.333 0.00 0.00 0.00 3.06
3243 4627 9.908152 CCTCCGTTTCTAAATATTTGTCTTTTT 57.092 29.630 11.05 0.00 0.00 1.94
3244 4628 9.292195 TCCTCCGTTTCTAAATATTTGTCTTTT 57.708 29.630 11.05 0.00 0.00 2.27
3245 4629 8.857694 TCCTCCGTTTCTAAATATTTGTCTTT 57.142 30.769 11.05 0.00 0.00 2.52
3246 4630 8.101419 ACTCCTCCGTTTCTAAATATTTGTCTT 58.899 33.333 11.05 0.00 0.00 3.01
3247 4631 7.621796 ACTCCTCCGTTTCTAAATATTTGTCT 58.378 34.615 11.05 0.00 0.00 3.41
3248 4632 7.845066 ACTCCTCCGTTTCTAAATATTTGTC 57.155 36.000 11.05 0.00 0.00 3.18
3249 4633 8.537858 ACTACTCCTCCGTTTCTAAATATTTGT 58.462 33.333 11.05 0.00 0.00 2.83
3250 4634 8.943909 ACTACTCCTCCGTTTCTAAATATTTG 57.056 34.615 11.05 1.65 0.00 2.32
3252 4636 8.637099 GGTACTACTCCTCCGTTTCTAAATATT 58.363 37.037 0.00 0.00 0.00 1.28
3253 4637 8.003629 AGGTACTACTCCTCCGTTTCTAAATAT 58.996 37.037 0.00 0.00 36.02 1.28
3254 4638 7.349598 AGGTACTACTCCTCCGTTTCTAAATA 58.650 38.462 0.00 0.00 36.02 1.40
3255 4639 6.193504 AGGTACTACTCCTCCGTTTCTAAAT 58.806 40.000 0.00 0.00 36.02 1.40
3256 4640 5.574188 AGGTACTACTCCTCCGTTTCTAAA 58.426 41.667 0.00 0.00 36.02 1.85
3257 4641 5.184892 AGGTACTACTCCTCCGTTTCTAA 57.815 43.478 0.00 0.00 36.02 2.10
3258 4642 4.851639 AGGTACTACTCCTCCGTTTCTA 57.148 45.455 0.00 0.00 36.02 2.10
3259 4643 3.735720 AGGTACTACTCCTCCGTTTCT 57.264 47.619 0.00 0.00 36.02 2.52
3260 4644 4.946772 AGTTAGGTACTACTCCTCCGTTTC 59.053 45.833 0.00 0.00 42.67 2.78
3261 4645 4.928263 AGTTAGGTACTACTCCTCCGTTT 58.072 43.478 0.00 0.00 42.67 3.60
3262 4646 4.582973 AGTTAGGTACTACTCCTCCGTT 57.417 45.455 0.00 0.00 42.67 4.44
3263 4647 4.018960 TCAAGTTAGGTACTACTCCTCCGT 60.019 45.833 0.00 0.00 42.67 4.69
3264 4648 4.335037 GTCAAGTTAGGTACTACTCCTCCG 59.665 50.000 0.00 0.00 42.67 4.63
3265 4649 5.259632 TGTCAAGTTAGGTACTACTCCTCC 58.740 45.833 0.00 0.00 42.67 4.30
3266 4650 6.830873 TTGTCAAGTTAGGTACTACTCCTC 57.169 41.667 0.00 0.00 42.67 3.71
3275 4659 9.976511 GCTACATGTATATTGTCAAGTTAGGTA 57.023 33.333 5.91 0.00 0.00 3.08
3276 4660 8.705594 AGCTACATGTATATTGTCAAGTTAGGT 58.294 33.333 5.91 0.00 0.00 3.08
3280 4664 7.657761 GCCTAGCTACATGTATATTGTCAAGTT 59.342 37.037 5.91 0.00 0.00 2.66
3281 4665 7.155328 GCCTAGCTACATGTATATTGTCAAGT 58.845 38.462 5.91 0.00 0.00 3.16
3282 4666 6.591834 GGCCTAGCTACATGTATATTGTCAAG 59.408 42.308 5.91 0.00 0.00 3.02
3283 4667 6.464222 GGCCTAGCTACATGTATATTGTCAA 58.536 40.000 5.91 0.00 0.00 3.18
3284 4668 5.046591 GGGCCTAGCTACATGTATATTGTCA 60.047 44.000 5.91 0.00 0.00 3.58
3285 4669 5.046591 TGGGCCTAGCTACATGTATATTGTC 60.047 44.000 5.91 0.00 0.00 3.18
3286 4670 4.844085 TGGGCCTAGCTACATGTATATTGT 59.156 41.667 5.91 0.00 0.00 2.71
3287 4671 5.420725 TGGGCCTAGCTACATGTATATTG 57.579 43.478 5.91 0.00 0.00 1.90
3288 4672 6.642733 AATGGGCCTAGCTACATGTATATT 57.357 37.500 5.91 0.00 0.00 1.28
3289 4673 6.642733 AAATGGGCCTAGCTACATGTATAT 57.357 37.500 5.91 0.63 0.00 0.86
3290 4674 6.448369 AAAATGGGCCTAGCTACATGTATA 57.552 37.500 5.91 0.00 0.00 1.47
3291 4675 5.324832 AAAATGGGCCTAGCTACATGTAT 57.675 39.130 5.91 0.00 0.00 2.29
3292 4676 4.788925 AAAATGGGCCTAGCTACATGTA 57.211 40.909 4.53 5.25 0.00 2.29
3371 4762 8.782144 AGTAGCTCCTACGTAAGACAATATAAC 58.218 37.037 0.00 0.00 41.37 1.89
3379 4770 3.492756 CGGTAGTAGCTCCTACGTAAGAC 59.507 52.174 10.05 0.00 41.37 3.01
3453 4844 2.758737 ATGACGACGGAGGGGTCC 60.759 66.667 0.00 0.00 33.83 4.46
3600 4994 4.664677 GTGGTCGGCGAGTGCAGT 62.665 66.667 11.20 0.00 45.35 4.40
3771 5165 1.221566 TGGAGGCACCATGTCATCG 59.778 57.895 0.00 0.00 44.64 3.84
3852 5246 5.813672 TCCACGCATCCAAGTAATTAAGTAC 59.186 40.000 4.93 4.93 0.00 2.73
3862 5256 0.392998 GTCCATCCACGCATCCAAGT 60.393 55.000 0.00 0.00 0.00 3.16
3863 5257 1.097547 GGTCCATCCACGCATCCAAG 61.098 60.000 0.00 0.00 35.97 3.61
3864 5258 1.077787 GGTCCATCCACGCATCCAA 60.078 57.895 0.00 0.00 35.97 3.53
3865 5259 2.297129 TGGTCCATCCACGCATCCA 61.297 57.895 0.00 0.00 41.93 3.41
3866 5260 2.589540 TGGTCCATCCACGCATCC 59.410 61.111 0.00 0.00 41.93 3.51
3960 5364 3.682858 GTGTAGCAACGCTCCAAGAAATA 59.317 43.478 0.00 0.00 40.44 1.40
3961 5365 2.484264 GTGTAGCAACGCTCCAAGAAAT 59.516 45.455 0.00 0.00 40.44 2.17
3962 5366 1.871039 GTGTAGCAACGCTCCAAGAAA 59.129 47.619 0.00 0.00 40.44 2.52
3963 5367 1.508632 GTGTAGCAACGCTCCAAGAA 58.491 50.000 0.00 0.00 40.44 2.52
3964 5368 0.666274 CGTGTAGCAACGCTCCAAGA 60.666 55.000 0.00 0.00 40.44 3.02
3965 5369 1.781555 CGTGTAGCAACGCTCCAAG 59.218 57.895 0.00 0.00 40.44 3.61
3966 5370 3.945436 CGTGTAGCAACGCTCCAA 58.055 55.556 0.00 0.00 40.44 3.53
3972 5376 8.981164 ACAAATACTGTCATACGTGTAGCAACG 61.981 40.741 0.00 5.23 41.15 4.10
3973 5377 6.090358 ACAAATACTGTCATACGTGTAGCAAC 59.910 38.462 0.00 0.00 29.87 4.17
3974 5378 6.160684 ACAAATACTGTCATACGTGTAGCAA 58.839 36.000 0.00 0.00 29.87 3.91
3975 5379 5.716094 ACAAATACTGTCATACGTGTAGCA 58.284 37.500 0.00 0.00 29.87 3.49
3976 5380 6.075728 CGTACAAATACTGTCATACGTGTAGC 60.076 42.308 0.00 0.00 39.64 3.58
3977 5381 7.182089 TCGTACAAATACTGTCATACGTGTAG 58.818 38.462 0.00 0.00 38.25 2.74
3978 5382 7.071014 TCGTACAAATACTGTCATACGTGTA 57.929 36.000 0.00 0.00 38.25 2.90
3979 5383 5.941733 TCGTACAAATACTGTCATACGTGT 58.058 37.500 0.00 0.00 38.25 4.49
3980 5384 7.445900 AATCGTACAAATACTGTCATACGTG 57.554 36.000 0.00 0.00 38.25 4.49
3981 5385 8.470040 AAAATCGTACAAATACTGTCATACGT 57.530 30.769 0.00 0.00 38.25 3.57
3982 5386 9.194716 CAAAAATCGTACAAATACTGTCATACG 57.805 33.333 0.00 0.00 38.37 3.06
3986 5390 8.215792 CGTACAAAAATCGTACAAATACTGTCA 58.784 33.333 0.00 0.00 39.36 3.58
3987 5391 8.427012 TCGTACAAAAATCGTACAAATACTGTC 58.573 33.333 0.00 0.00 39.36 3.51
3988 5392 8.296799 TCGTACAAAAATCGTACAAATACTGT 57.703 30.769 0.00 0.00 39.36 3.55
3989 5393 9.246423 CTTCGTACAAAAATCGTACAAATACTG 57.754 33.333 0.00 0.00 39.36 2.74
3990 5394 8.981647 ACTTCGTACAAAAATCGTACAAATACT 58.018 29.630 0.00 0.00 39.36 2.12
3993 5397 7.953710 GCTACTTCGTACAAAAATCGTACAAAT 59.046 33.333 0.00 0.00 39.36 2.32
3994 5398 7.042858 TGCTACTTCGTACAAAAATCGTACAAA 60.043 33.333 0.00 0.00 39.36 2.83
3995 5399 6.420306 TGCTACTTCGTACAAAAATCGTACAA 59.580 34.615 0.00 0.00 39.36 2.41
3996 5400 5.919707 TGCTACTTCGTACAAAAATCGTACA 59.080 36.000 0.00 0.00 39.36 2.90
3997 5401 6.380111 TGCTACTTCGTACAAAAATCGTAC 57.620 37.500 0.00 0.00 36.66 3.67
3998 5402 5.574055 CCTGCTACTTCGTACAAAAATCGTA 59.426 40.000 0.00 0.00 0.00 3.43
3999 5403 4.387862 CCTGCTACTTCGTACAAAAATCGT 59.612 41.667 0.00 0.00 0.00 3.73
4000 5404 4.201685 CCCTGCTACTTCGTACAAAAATCG 60.202 45.833 0.00 0.00 0.00 3.34
4001 5405 4.436986 GCCCTGCTACTTCGTACAAAAATC 60.437 45.833 0.00 0.00 0.00 2.17
4002 5406 3.439129 GCCCTGCTACTTCGTACAAAAAT 59.561 43.478 0.00 0.00 0.00 1.82
4003 5407 2.809696 GCCCTGCTACTTCGTACAAAAA 59.190 45.455 0.00 0.00 0.00 1.94
4004 5408 2.419667 GCCCTGCTACTTCGTACAAAA 58.580 47.619 0.00 0.00 0.00 2.44
4005 5409 1.338389 GGCCCTGCTACTTCGTACAAA 60.338 52.381 0.00 0.00 0.00 2.83
4006 5410 0.248289 GGCCCTGCTACTTCGTACAA 59.752 55.000 0.00 0.00 0.00 2.41
4007 5411 0.901114 TGGCCCTGCTACTTCGTACA 60.901 55.000 0.00 0.00 0.00 2.90
4008 5412 0.459759 GTGGCCCTGCTACTTCGTAC 60.460 60.000 0.00 0.00 37.08 3.67
4009 5413 1.610554 GGTGGCCCTGCTACTTCGTA 61.611 60.000 0.00 0.00 39.93 3.43
4010 5414 2.663196 GTGGCCCTGCTACTTCGT 59.337 61.111 0.00 0.00 37.08 3.85
4011 5415 2.125106 GGTGGCCCTGCTACTTCG 60.125 66.667 0.00 0.00 39.93 3.79
4012 5416 2.125106 CGGTGGCCCTGCTACTTC 60.125 66.667 0.00 0.00 39.93 3.01
4013 5417 2.526046 AACGGTGGCCCTGCTACTT 61.526 57.895 0.00 0.00 39.93 2.24
4014 5418 2.928396 AACGGTGGCCCTGCTACT 60.928 61.111 0.00 0.00 39.93 2.57
4015 5419 2.536997 ATCAACGGTGGCCCTGCTAC 62.537 60.000 0.00 0.00 39.31 3.58
4016 5420 2.252072 GATCAACGGTGGCCCTGCTA 62.252 60.000 0.00 0.00 0.00 3.49
4017 5421 3.628646 GATCAACGGTGGCCCTGCT 62.629 63.158 0.00 0.00 0.00 4.24
4018 5422 3.134127 GATCAACGGTGGCCCTGC 61.134 66.667 0.00 0.00 0.00 4.85
4019 5423 1.303236 TTGATCAACGGTGGCCCTG 60.303 57.895 3.38 0.00 0.00 4.45
4020 5424 1.303317 GTTGATCAACGGTGGCCCT 60.303 57.895 22.09 0.00 0.00 5.19
4021 5425 3.274067 GTTGATCAACGGTGGCCC 58.726 61.111 22.09 0.00 0.00 5.80
4029 5433 0.874390 TTGAGCCAGCGTTGATCAAC 59.126 50.000 25.68 25.68 37.92 3.18
4030 5434 1.159285 CTTGAGCCAGCGTTGATCAA 58.841 50.000 3.38 3.38 32.49 2.57
4031 5435 0.674581 CCTTGAGCCAGCGTTGATCA 60.675 55.000 0.00 1.77 0.00 2.92
4032 5436 0.674895 ACCTTGAGCCAGCGTTGATC 60.675 55.000 0.00 0.00 0.00 2.92
4033 5437 0.957395 CACCTTGAGCCAGCGTTGAT 60.957 55.000 0.00 0.00 0.00 2.57
4034 5438 1.597854 CACCTTGAGCCAGCGTTGA 60.598 57.895 0.00 0.00 0.00 3.18
4035 5439 2.620112 CCACCTTGAGCCAGCGTTG 61.620 63.158 0.00 0.00 0.00 4.10
4036 5440 2.281761 CCACCTTGAGCCAGCGTT 60.282 61.111 0.00 0.00 0.00 4.84
4037 5441 4.335647 CCCACCTTGAGCCAGCGT 62.336 66.667 0.00 0.00 0.00 5.07
4038 5442 3.850098 AACCCACCTTGAGCCAGCG 62.850 63.158 0.00 0.00 0.00 5.18
4039 5443 1.973812 GAACCCACCTTGAGCCAGC 60.974 63.158 0.00 0.00 0.00 4.85
4040 5444 0.890996 GTGAACCCACCTTGAGCCAG 60.891 60.000 0.00 0.00 37.33 4.85
4041 5445 1.150536 GTGAACCCACCTTGAGCCA 59.849 57.895 0.00 0.00 37.33 4.75
4042 5446 1.966451 CGTGAACCCACCTTGAGCC 60.966 63.158 0.00 0.00 40.12 4.70
4043 5447 1.966451 CCGTGAACCCACCTTGAGC 60.966 63.158 0.00 0.00 40.12 4.26
4044 5448 0.884704 CACCGTGAACCCACCTTGAG 60.885 60.000 0.00 0.00 40.12 3.02
4045 5449 1.147376 CACCGTGAACCCACCTTGA 59.853 57.895 0.00 0.00 40.12 3.02
4046 5450 1.896660 CCACCGTGAACCCACCTTG 60.897 63.158 0.00 0.00 40.12 3.61
4047 5451 1.423794 ATCCACCGTGAACCCACCTT 61.424 55.000 0.00 0.00 40.12 3.50
4048 5452 1.423794 AATCCACCGTGAACCCACCT 61.424 55.000 0.00 0.00 40.12 4.00
4049 5453 0.325602 TAATCCACCGTGAACCCACC 59.674 55.000 0.00 0.00 40.12 4.61
4050 5454 1.445871 GTAATCCACCGTGAACCCAC 58.554 55.000 0.00 0.00 39.86 4.61
4051 5455 0.037139 CGTAATCCACCGTGAACCCA 60.037 55.000 0.00 0.00 0.00 4.51
4052 5456 1.363885 GCGTAATCCACCGTGAACCC 61.364 60.000 0.00 0.00 0.00 4.11
4053 5457 0.390735 AGCGTAATCCACCGTGAACC 60.391 55.000 0.00 0.00 0.00 3.62
4054 5458 2.282701 TAGCGTAATCCACCGTGAAC 57.717 50.000 0.00 0.00 0.00 3.18
4055 5459 2.542205 CGATAGCGTAATCCACCGTGAA 60.542 50.000 0.00 0.00 0.00 3.18
4056 5460 1.002142 CGATAGCGTAATCCACCGTGA 60.002 52.381 0.00 0.00 0.00 4.35
4057 5461 1.405461 CGATAGCGTAATCCACCGTG 58.595 55.000 0.00 0.00 0.00 4.94
4058 5462 3.859650 CGATAGCGTAATCCACCGT 57.140 52.632 0.00 0.00 0.00 4.83
4067 5471 2.877786 TCCGATTTGGTACGATAGCGTA 59.122 45.455 9.55 9.55 43.98 4.42
4068 5472 1.677576 TCCGATTTGGTACGATAGCGT 59.322 47.619 12.10 12.10 45.36 5.07
4069 5473 2.049228 GTCCGATTTGGTACGATAGCG 58.951 52.381 0.00 0.00 40.63 4.26
4070 5474 2.049228 CGTCCGATTTGGTACGATAGC 58.951 52.381 8.42 0.00 41.09 2.97
4071 5475 3.552541 CTCGTCCGATTTGGTACGATAG 58.447 50.000 14.16 4.86 43.96 2.08
4072 5476 2.287188 GCTCGTCCGATTTGGTACGATA 60.287 50.000 14.16 0.12 43.96 2.92
4073 5477 1.535437 GCTCGTCCGATTTGGTACGAT 60.535 52.381 14.16 0.00 43.96 3.73
4074 5478 0.179156 GCTCGTCCGATTTGGTACGA 60.179 55.000 13.49 13.49 43.32 3.43
4075 5479 0.179145 AGCTCGTCCGATTTGGTACG 60.179 55.000 8.00 8.00 40.43 3.67
4076 5480 2.005971 AAGCTCGTCCGATTTGGTAC 57.994 50.000 0.00 0.00 39.52 3.34
4077 5481 2.028839 TGAAAGCTCGTCCGATTTGGTA 60.029 45.455 0.00 0.00 39.52 3.25
4078 5482 1.270625 TGAAAGCTCGTCCGATTTGGT 60.271 47.619 0.00 0.00 39.52 3.67
4079 5483 1.438651 TGAAAGCTCGTCCGATTTGG 58.561 50.000 0.00 0.00 40.09 3.28
4080 5484 2.285256 CGATGAAAGCTCGTCCGATTTG 60.285 50.000 0.00 0.00 34.54 2.32
4081 5485 1.927174 CGATGAAAGCTCGTCCGATTT 59.073 47.619 0.00 0.00 34.54 2.17
4082 5486 1.135083 ACGATGAAAGCTCGTCCGATT 60.135 47.619 0.00 0.00 45.63 3.34
4083 5487 0.456221 ACGATGAAAGCTCGTCCGAT 59.544 50.000 0.00 0.00 45.63 4.18
4084 5488 1.089112 TACGATGAAAGCTCGTCCGA 58.911 50.000 0.82 0.00 45.63 4.55
4085 5489 1.781429 CATACGATGAAAGCTCGTCCG 59.219 52.381 0.82 0.00 45.63 4.79
4086 5490 2.535984 CACATACGATGAAAGCTCGTCC 59.464 50.000 0.82 0.00 45.63 4.79
4087 5491 3.435566 TCACATACGATGAAAGCTCGTC 58.564 45.455 0.82 0.00 45.63 4.20
4089 5493 2.791560 CCTCACATACGATGAAAGCTCG 59.208 50.000 0.00 0.00 41.77 5.03
4090 5494 2.541762 GCCTCACATACGATGAAAGCTC 59.458 50.000 0.00 0.00 0.00 4.09
4091 5495 2.093500 TGCCTCACATACGATGAAAGCT 60.093 45.455 0.00 0.00 0.00 3.74
4092 5496 2.279741 TGCCTCACATACGATGAAAGC 58.720 47.619 0.00 0.00 0.00 3.51
4093 5497 5.490139 AATTGCCTCACATACGATGAAAG 57.510 39.130 0.00 0.00 0.00 2.62
4094 5498 4.335315 GGAATTGCCTCACATACGATGAAA 59.665 41.667 0.00 0.00 0.00 2.69
4095 5499 3.876914 GGAATTGCCTCACATACGATGAA 59.123 43.478 0.00 0.00 0.00 2.57
4096 5500 3.466836 GGAATTGCCTCACATACGATGA 58.533 45.455 0.00 0.00 0.00 2.92
4097 5501 2.549754 GGGAATTGCCTCACATACGATG 59.450 50.000 9.06 0.00 36.66 3.84
4098 5502 2.439507 AGGGAATTGCCTCACATACGAT 59.560 45.455 13.61 0.00 36.66 3.73
4099 5503 1.837439 AGGGAATTGCCTCACATACGA 59.163 47.619 13.61 0.00 36.66 3.43
4100 5504 2.332063 AGGGAATTGCCTCACATACG 57.668 50.000 13.61 0.00 36.66 3.06
4101 5505 6.064717 AGAAATAGGGAATTGCCTCACATAC 58.935 40.000 23.25 10.18 36.66 2.39
4102 5506 6.266131 AGAAATAGGGAATTGCCTCACATA 57.734 37.500 23.25 4.66 36.66 2.29
4103 5507 5.134725 AGAAATAGGGAATTGCCTCACAT 57.865 39.130 23.25 7.90 36.66 3.21
4104 5508 4.591321 AGAAATAGGGAATTGCCTCACA 57.409 40.909 23.25 5.50 36.66 3.58
4105 5509 4.949856 TCAAGAAATAGGGAATTGCCTCAC 59.050 41.667 23.25 11.85 36.66 3.51
4106 5510 5.191727 TCAAGAAATAGGGAATTGCCTCA 57.808 39.130 23.25 9.50 36.66 3.86
4107 5511 5.418840 TGTTCAAGAAATAGGGAATTGCCTC 59.581 40.000 23.25 8.35 36.66 4.70
4108 5512 5.332743 TGTTCAAGAAATAGGGAATTGCCT 58.667 37.500 23.11 23.11 36.66 4.75
4109 5513 5.659440 TGTTCAAGAAATAGGGAATTGCC 57.341 39.130 8.15 8.15 0.00 4.52
4110 5514 6.633856 ACATGTTCAAGAAATAGGGAATTGC 58.366 36.000 0.00 0.00 0.00 3.56
4111 5515 7.829725 TGACATGTTCAAGAAATAGGGAATTG 58.170 34.615 0.00 0.00 0.00 2.32
4112 5516 8.599624 ATGACATGTTCAAGAAATAGGGAATT 57.400 30.769 0.00 0.00 37.92 2.17
4113 5517 8.599624 AATGACATGTTCAAGAAATAGGGAAT 57.400 30.769 0.00 0.00 37.92 3.01
4114 5518 8.421249 AAATGACATGTTCAAGAAATAGGGAA 57.579 30.769 0.00 0.00 37.92 3.97
4115 5519 8.956426 GTAAATGACATGTTCAAGAAATAGGGA 58.044 33.333 0.00 0.00 37.92 4.20
4116 5520 8.960591 AGTAAATGACATGTTCAAGAAATAGGG 58.039 33.333 0.00 0.00 37.92 3.53
4117 5521 9.778993 CAGTAAATGACATGTTCAAGAAATAGG 57.221 33.333 0.00 0.00 37.92 2.57
4118 5522 9.778993 CCAGTAAATGACATGTTCAAGAAATAG 57.221 33.333 0.00 0.00 37.92 1.73
4151 5559 5.869888 ACTACTTACACAGTGCAGATTTAGC 59.130 40.000 0.00 0.00 35.97 3.09
4152 5560 8.244802 AGTACTACTTACACAGTGCAGATTTAG 58.755 37.037 0.00 0.00 35.97 1.85
4158 5566 4.672024 CGGAGTACTACTTACACAGTGCAG 60.672 50.000 2.99 0.00 35.97 4.41
4322 5737 8.116651 AGTTACTAGCTCATGTAGATGTATGG 57.883 38.462 0.00 0.00 0.00 2.74
4329 5744 8.149647 GGAGTAGTAGTTACTAGCTCATGTAGA 58.850 40.741 19.13 0.00 42.69 2.59
4333 5748 6.300703 AGGGAGTAGTAGTTACTAGCTCATG 58.699 44.000 19.13 0.00 42.69 3.07
4334 5749 6.466182 GGAGGGAGTAGTAGTTACTAGCTCAT 60.466 46.154 19.13 12.68 42.69 2.90
4371 5789 8.210946 TCCATTTGAAGTCTCTAGAAAGACAAA 58.789 33.333 13.05 12.10 46.65 2.83
4372 5790 7.657761 GTCCATTTGAAGTCTCTAGAAAGACAA 59.342 37.037 13.05 5.33 46.65 3.18
4373 5791 7.015682 AGTCCATTTGAAGTCTCTAGAAAGACA 59.984 37.037 13.05 0.02 46.65 3.41
4374 5792 7.382898 AGTCCATTTGAAGTCTCTAGAAAGAC 58.617 38.462 4.36 4.36 44.96 3.01
4375 5793 7.546250 AGTCCATTTGAAGTCTCTAGAAAGA 57.454 36.000 0.00 0.00 0.00 2.52
4376 5794 7.762159 GGTAGTCCATTTGAAGTCTCTAGAAAG 59.238 40.741 0.00 0.00 0.00 2.62
4377 5795 7.234782 TGGTAGTCCATTTGAAGTCTCTAGAAA 59.765 37.037 0.00 0.00 39.03 2.52
4378 5796 6.724441 TGGTAGTCCATTTGAAGTCTCTAGAA 59.276 38.462 0.00 0.00 39.03 2.10
4379 5797 6.253758 TGGTAGTCCATTTGAAGTCTCTAGA 58.746 40.000 0.00 0.00 39.03 2.43
4380 5798 6.531503 TGGTAGTCCATTTGAAGTCTCTAG 57.468 41.667 0.00 0.00 39.03 2.43
4394 5812 9.788889 CTATATACATCCGTATATGGTAGTCCA 57.211 37.037 10.85 3.57 46.31 4.02
4433 5851 4.479619 GAGCAAAATGAGTGAATCCACAC 58.520 43.478 0.00 0.00 45.54 3.82
4434 5852 3.507233 GGAGCAAAATGAGTGAATCCACA 59.493 43.478 0.00 0.00 45.54 4.17
4435 5853 3.426695 CGGAGCAAAATGAGTGAATCCAC 60.427 47.826 0.00 0.00 43.50 4.02
4441 5859 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
4444 5862 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
4445 5863 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
4446 5864 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
4447 5865 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
4448 5866 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
4449 5867 4.530710 AAGTGACTACATACGGAGCAAA 57.469 40.909 0.00 0.00 0.00 3.68
4450 5868 5.847111 ATAAGTGACTACATACGGAGCAA 57.153 39.130 0.00 0.00 0.00 3.91
4451 5869 5.358725 TCAATAAGTGACTACATACGGAGCA 59.641 40.000 0.00 0.00 0.00 4.26
4452 5870 5.828747 TCAATAAGTGACTACATACGGAGC 58.171 41.667 0.00 0.00 0.00 4.70
4453 5871 8.873215 ATTTCAATAAGTGACTACATACGGAG 57.127 34.615 0.00 0.00 35.39 4.63
4454 5872 8.692710 AGATTTCAATAAGTGACTACATACGGA 58.307 33.333 0.00 0.00 35.39 4.69
4455 5873 8.873215 AGATTTCAATAAGTGACTACATACGG 57.127 34.615 0.00 0.00 35.39 4.02
4481 5899 9.947433 TCCGTTCCTAAATATTTGTCTTTCTAA 57.053 29.630 11.05 0.00 0.00 2.10
4482 5900 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
4483 5901 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
4484 5902 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
4485 5903 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
4486 5904 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
4487 5905 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
4488 5906 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
4489 5907 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
4490 5908 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
4493 5911 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
4496 5914 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
4499 5917 3.684408 AATACTACTCCCTCCGTTCCT 57.316 47.619 0.00 0.00 0.00 3.36
4502 5920 6.405176 CGAAACTAAATACTACTCCCTCCGTT 60.405 42.308 0.00 0.00 0.00 4.44
4550 5968 5.932619 AGTATTTGGTTAAAATCCTGCCC 57.067 39.130 0.00 0.00 39.29 5.36
4586 6004 7.103641 AGGAAGCACGTGATCTTCTAAAAATA 58.896 34.615 25.32 0.00 38.86 1.40
4596 6014 4.679373 ATATTGAGGAAGCACGTGATCT 57.321 40.909 22.23 7.33 0.00 2.75
4603 6021 6.683974 ACACACAATATATTGAGGAAGCAC 57.316 37.500 28.13 0.00 40.14 4.40
4604 6022 6.404623 GCAACACACAATATATTGAGGAAGCA 60.405 38.462 28.13 0.00 40.14 3.91
4671 6089 8.038944 CCATCAAGAAATCCTCAACATGATTTT 58.961 33.333 0.00 0.00 40.34 1.82
4789 6207 8.467598 TGTAAAGTCTATAAGTCACTCCATGTC 58.532 37.037 0.00 0.00 0.00 3.06
4790 6208 8.362464 TGTAAAGTCTATAAGTCACTCCATGT 57.638 34.615 0.00 0.00 0.00 3.21
4824 6242 4.878397 TCAAAACCAAACGCAAAATCCAAT 59.122 33.333 0.00 0.00 0.00 3.16
4828 6246 6.963805 TCAATTTCAAAACCAAACGCAAAATC 59.036 30.769 0.00 0.00 0.00 2.17
4829 6247 6.846350 TCAATTTCAAAACCAAACGCAAAAT 58.154 28.000 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.