Multiple sequence alignment - TraesCS2B01G279700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G279700 chr2B 100.000 3007 0 0 1 3007 385888022 385891028 0.000000e+00 5553
1 TraesCS2B01G279700 chr2D 91.960 2587 106 40 275 2810 318247548 318250083 0.000000e+00 3531
2 TraesCS2B01G279700 chr2A 94.850 1534 41 13 273 1793 413489788 413488280 0.000000e+00 2361
3 TraesCS2B01G279700 chr2A 84.414 956 66 31 1880 2790 413487993 413487076 0.000000e+00 863
4 TraesCS2B01G279700 chr2A 97.549 204 3 2 2 205 762946333 762946534 6.170000e-92 348
5 TraesCS2B01G279700 chr3B 98.507 201 3 0 1 201 650919462 650919662 3.690000e-94 355
6 TraesCS2B01G279700 chr3B 95.545 202 8 1 1 201 807330527 807330728 3.740000e-84 322
7 TraesCS2B01G279700 chr5B 97.000 200 5 1 1 200 391057376 391057178 4.800000e-88 335
8 TraesCS2B01G279700 chr5B 95.980 199 8 0 2 200 410223391 410223589 1.040000e-84 324
9 TraesCS2B01G279700 chr5B 92.417 211 10 2 1 205 528179667 528179457 2.270000e-76 296
10 TraesCS2B01G279700 chr4B 95.980 199 7 1 1 198 2334734 2334932 3.740000e-84 322
11 TraesCS2B01G279700 chr4B 94.194 155 8 1 2850 3004 427717956 427718109 5.010000e-58 235
12 TraesCS2B01G279700 chr7B 94.634 205 5 4 1 204 593292130 593292329 2.250000e-81 313
13 TraesCS2B01G279700 chr7B 94.949 198 10 0 1 198 537211234 537211037 8.090000e-81 311
14 TraesCS2B01G279700 chr3D 93.082 159 9 2 2850 3007 154427798 154427955 6.480000e-57 231
15 TraesCS2B01G279700 chr3D 93.878 147 9 0 2859 3005 262984769 262984623 3.900000e-54 222
16 TraesCS2B01G279700 chr7D 93.333 150 10 0 2858 3007 601702728 601702877 3.900000e-54 222
17 TraesCS2B01G279700 chr5D 93.289 149 10 0 2859 3007 163840136 163839988 1.400000e-53 220
18 TraesCS2B01G279700 chr5D 93.243 148 10 0 2858 3005 168029305 168029158 5.050000e-53 219
19 TraesCS2B01G279700 chr4D 93.289 149 10 0 2859 3007 504366201 504366349 1.400000e-53 220
20 TraesCS2B01G279700 chr4D 93.289 149 10 0 2859 3007 504392391 504392539 1.400000e-53 220
21 TraesCS2B01G279700 chr6D 91.720 157 11 1 2853 3007 232393742 232393898 1.820000e-52 217


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G279700 chr2B 385888022 385891028 3006 False 5553 5553 100.000 1 3007 1 chr2B.!!$F1 3006
1 TraesCS2B01G279700 chr2D 318247548 318250083 2535 False 3531 3531 91.960 275 2810 1 chr2D.!!$F1 2535
2 TraesCS2B01G279700 chr2A 413487076 413489788 2712 True 1612 2361 89.632 273 2790 2 chr2A.!!$R1 2517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
24 25 0.032952 GGCGGTCGCATAACAGGATA 59.967 55.0 17.21 0.00 44.11 2.59 F
157 158 0.103572 AAAAGGCCGCATGCATCATC 59.896 50.0 19.57 1.99 43.89 2.92 F
225 226 0.107831 CGTTGGTGTTTCCCTCTCCA 59.892 55.0 0.00 0.00 34.77 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1038 1049 0.106519 GTCTTGGATGTGGGATGGGG 60.107 60.0 0.00 0.00 0.00 4.96 R
1945 2164 0.175760 CGACCAGACACCATTCGGAT 59.824 55.0 0.00 0.00 35.59 4.18 R
2155 2426 0.321387 TGTACGAGAGCTCACCGACT 60.321 55.0 27.52 13.65 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.279851 CGGATGGCGGTCGCATAA 60.280 61.111 17.21 2.61 44.11 1.90
18 19 2.594962 CGGATGGCGGTCGCATAAC 61.595 63.158 17.21 4.44 44.11 1.89
19 20 1.522806 GGATGGCGGTCGCATAACA 60.523 57.895 17.21 6.12 44.11 2.41
20 21 1.498865 GGATGGCGGTCGCATAACAG 61.499 60.000 17.21 0.00 44.11 3.16
21 22 1.498865 GATGGCGGTCGCATAACAGG 61.499 60.000 17.21 0.00 44.11 4.00
22 23 1.966901 ATGGCGGTCGCATAACAGGA 61.967 55.000 17.21 0.00 44.11 3.86
23 24 1.227556 GGCGGTCGCATAACAGGAT 60.228 57.895 17.21 0.00 44.11 3.24
24 25 0.032952 GGCGGTCGCATAACAGGATA 59.967 55.000 17.21 0.00 44.11 2.59
25 26 1.419374 GCGGTCGCATAACAGGATAG 58.581 55.000 10.67 0.00 41.49 2.08
26 27 1.935300 GCGGTCGCATAACAGGATAGG 60.935 57.143 10.67 0.00 41.49 2.57
27 28 1.611977 CGGTCGCATAACAGGATAGGA 59.388 52.381 0.00 0.00 0.00 2.94
28 29 2.351835 CGGTCGCATAACAGGATAGGAG 60.352 54.545 0.00 0.00 0.00 3.69
29 30 2.628657 GGTCGCATAACAGGATAGGAGT 59.371 50.000 0.00 0.00 0.00 3.85
30 31 3.305471 GGTCGCATAACAGGATAGGAGTC 60.305 52.174 0.00 0.00 0.00 3.36
31 32 3.570550 GTCGCATAACAGGATAGGAGTCT 59.429 47.826 0.00 0.00 0.00 3.24
32 33 4.760715 GTCGCATAACAGGATAGGAGTCTA 59.239 45.833 0.00 0.00 0.00 2.59
33 34 5.004448 TCGCATAACAGGATAGGAGTCTAG 58.996 45.833 0.00 0.00 0.00 2.43
34 35 5.004448 CGCATAACAGGATAGGAGTCTAGA 58.996 45.833 0.00 0.00 0.00 2.43
35 36 5.123186 CGCATAACAGGATAGGAGTCTAGAG 59.877 48.000 0.00 0.00 0.00 2.43
36 37 6.242396 GCATAACAGGATAGGAGTCTAGAGA 58.758 44.000 0.00 0.00 0.00 3.10
37 38 6.374333 GCATAACAGGATAGGAGTCTAGAGAG 59.626 46.154 0.00 0.00 0.00 3.20
38 39 4.367039 ACAGGATAGGAGTCTAGAGAGC 57.633 50.000 0.00 0.00 0.00 4.09
39 40 3.980698 ACAGGATAGGAGTCTAGAGAGCT 59.019 47.826 0.00 0.00 0.00 4.09
40 41 4.415512 ACAGGATAGGAGTCTAGAGAGCTT 59.584 45.833 0.00 0.00 0.00 3.74
41 42 4.761739 CAGGATAGGAGTCTAGAGAGCTTG 59.238 50.000 0.00 0.00 0.00 4.01
42 43 4.415512 AGGATAGGAGTCTAGAGAGCTTGT 59.584 45.833 0.00 0.00 0.00 3.16
43 44 4.760204 GGATAGGAGTCTAGAGAGCTTGTC 59.240 50.000 0.00 0.00 0.00 3.18
44 45 3.012934 AGGAGTCTAGAGAGCTTGTCC 57.987 52.381 0.00 0.00 0.00 4.02
45 46 2.580783 AGGAGTCTAGAGAGCTTGTCCT 59.419 50.000 0.00 0.00 0.00 3.85
46 47 3.011257 AGGAGTCTAGAGAGCTTGTCCTT 59.989 47.826 0.00 0.00 28.34 3.36
47 48 4.228666 AGGAGTCTAGAGAGCTTGTCCTTA 59.771 45.833 0.00 0.00 28.34 2.69
48 49 4.337274 GGAGTCTAGAGAGCTTGTCCTTAC 59.663 50.000 0.00 0.00 0.00 2.34
49 50 5.187621 AGTCTAGAGAGCTTGTCCTTACT 57.812 43.478 0.00 0.00 0.00 2.24
50 51 6.316280 AGTCTAGAGAGCTTGTCCTTACTA 57.684 41.667 0.00 0.00 0.00 1.82
51 52 6.906848 AGTCTAGAGAGCTTGTCCTTACTAT 58.093 40.000 0.00 0.00 0.00 2.12
52 53 6.996282 AGTCTAGAGAGCTTGTCCTTACTATC 59.004 42.308 0.00 0.00 0.00 2.08
53 54 6.768861 GTCTAGAGAGCTTGTCCTTACTATCA 59.231 42.308 0.00 0.00 0.00 2.15
54 55 5.845391 AGAGAGCTTGTCCTTACTATCAC 57.155 43.478 0.00 0.00 0.00 3.06
55 56 4.647399 AGAGAGCTTGTCCTTACTATCACC 59.353 45.833 0.00 0.00 0.00 4.02
56 57 4.353777 AGAGCTTGTCCTTACTATCACCA 58.646 43.478 0.00 0.00 0.00 4.17
57 58 4.965532 AGAGCTTGTCCTTACTATCACCAT 59.034 41.667 0.00 0.00 0.00 3.55
58 59 6.136857 AGAGCTTGTCCTTACTATCACCATA 58.863 40.000 0.00 0.00 0.00 2.74
59 60 6.041069 AGAGCTTGTCCTTACTATCACCATAC 59.959 42.308 0.00 0.00 0.00 2.39
60 61 5.070580 AGCTTGTCCTTACTATCACCATACC 59.929 44.000 0.00 0.00 0.00 2.73
61 62 5.524971 TTGTCCTTACTATCACCATACCG 57.475 43.478 0.00 0.00 0.00 4.02
62 63 3.893200 TGTCCTTACTATCACCATACCGG 59.107 47.826 0.00 0.00 42.50 5.28
74 75 3.552604 CCATACCGGTTGTCTTTTGTG 57.447 47.619 15.04 0.00 0.00 3.33
75 76 2.351350 CCATACCGGTTGTCTTTTGTGC 60.351 50.000 15.04 0.00 0.00 4.57
76 77 2.335316 TACCGGTTGTCTTTTGTGCT 57.665 45.000 15.04 0.00 0.00 4.40
77 78 1.470051 ACCGGTTGTCTTTTGTGCTT 58.530 45.000 0.00 0.00 0.00 3.91
78 79 1.822371 ACCGGTTGTCTTTTGTGCTTT 59.178 42.857 0.00 0.00 0.00 3.51
79 80 3.018149 ACCGGTTGTCTTTTGTGCTTTA 58.982 40.909 0.00 0.00 0.00 1.85
80 81 3.634910 ACCGGTTGTCTTTTGTGCTTTAT 59.365 39.130 0.00 0.00 0.00 1.40
81 82 4.098807 ACCGGTTGTCTTTTGTGCTTTATT 59.901 37.500 0.00 0.00 0.00 1.40
82 83 5.047188 CCGGTTGTCTTTTGTGCTTTATTT 58.953 37.500 0.00 0.00 0.00 1.40
83 84 5.522097 CCGGTTGTCTTTTGTGCTTTATTTT 59.478 36.000 0.00 0.00 0.00 1.82
84 85 6.410038 CGGTTGTCTTTTGTGCTTTATTTTG 58.590 36.000 0.00 0.00 0.00 2.44
85 86 6.191661 GGTTGTCTTTTGTGCTTTATTTTGC 58.808 36.000 0.00 0.00 0.00 3.68
86 87 6.037062 GGTTGTCTTTTGTGCTTTATTTTGCT 59.963 34.615 0.00 0.00 0.00 3.91
87 88 6.826893 TGTCTTTTGTGCTTTATTTTGCTC 57.173 33.333 0.00 0.00 0.00 4.26
88 89 5.752955 TGTCTTTTGTGCTTTATTTTGCTCC 59.247 36.000 0.00 0.00 0.00 4.70
89 90 4.981674 TCTTTTGTGCTTTATTTTGCTCCG 59.018 37.500 0.00 0.00 0.00 4.63
90 91 4.314740 TTTGTGCTTTATTTTGCTCCGT 57.685 36.364 0.00 0.00 0.00 4.69
91 92 4.314740 TTGTGCTTTATTTTGCTCCGTT 57.685 36.364 0.00 0.00 0.00 4.44
92 93 4.314740 TGTGCTTTATTTTGCTCCGTTT 57.685 36.364 0.00 0.00 0.00 3.60
93 94 4.047822 TGTGCTTTATTTTGCTCCGTTTG 58.952 39.130 0.00 0.00 0.00 2.93
94 95 3.056304 TGCTTTATTTTGCTCCGTTTGC 58.944 40.909 0.00 0.00 0.00 3.68
95 96 2.090503 GCTTTATTTTGCTCCGTTTGCG 59.909 45.455 0.00 0.00 37.95 4.85
96 97 3.560503 CTTTATTTTGCTCCGTTTGCGA 58.439 40.909 0.00 0.00 41.33 5.10
97 98 2.892373 TATTTTGCTCCGTTTGCGAG 57.108 45.000 0.00 0.00 41.33 5.03
98 99 0.387239 ATTTTGCTCCGTTTGCGAGC 60.387 50.000 2.88 2.88 41.33 5.03
99 100 1.444119 TTTTGCTCCGTTTGCGAGCT 61.444 50.000 10.82 0.00 39.85 4.09
100 101 2.116736 TTTGCTCCGTTTGCGAGCTG 62.117 55.000 10.82 0.00 39.85 4.24
101 102 3.044305 GCTCCGTTTGCGAGCTGT 61.044 61.111 0.00 0.00 41.33 4.40
102 103 1.736645 GCTCCGTTTGCGAGCTGTA 60.737 57.895 0.00 0.00 41.33 2.74
103 104 1.289109 GCTCCGTTTGCGAGCTGTAA 61.289 55.000 0.00 0.00 41.33 2.41
104 105 0.716108 CTCCGTTTGCGAGCTGTAAG 59.284 55.000 0.00 0.00 41.33 2.34
105 106 0.315886 TCCGTTTGCGAGCTGTAAGA 59.684 50.000 0.00 0.00 41.33 2.10
106 107 0.438830 CCGTTTGCGAGCTGTAAGAC 59.561 55.000 0.00 0.00 41.33 3.01
107 108 0.438830 CGTTTGCGAGCTGTAAGACC 59.561 55.000 0.00 0.00 41.33 3.85
108 109 1.797025 GTTTGCGAGCTGTAAGACCT 58.203 50.000 0.00 0.00 34.07 3.85
109 110 2.143925 GTTTGCGAGCTGTAAGACCTT 58.856 47.619 0.00 0.00 34.07 3.50
110 111 2.543777 TTGCGAGCTGTAAGACCTTT 57.456 45.000 0.00 0.00 34.07 3.11
111 112 1.795768 TGCGAGCTGTAAGACCTTTG 58.204 50.000 0.00 0.00 34.07 2.77
112 113 1.070134 TGCGAGCTGTAAGACCTTTGT 59.930 47.619 0.00 0.00 34.07 2.83
113 114 2.297880 TGCGAGCTGTAAGACCTTTGTA 59.702 45.455 0.00 0.00 34.07 2.41
114 115 3.243941 TGCGAGCTGTAAGACCTTTGTAA 60.244 43.478 0.00 0.00 34.07 2.41
115 116 3.933332 GCGAGCTGTAAGACCTTTGTAAT 59.067 43.478 0.00 0.00 34.07 1.89
116 117 4.201724 GCGAGCTGTAAGACCTTTGTAATG 60.202 45.833 0.00 0.00 34.07 1.90
117 118 5.168569 CGAGCTGTAAGACCTTTGTAATGA 58.831 41.667 0.00 0.00 34.07 2.57
118 119 5.062308 CGAGCTGTAAGACCTTTGTAATGAC 59.938 44.000 0.00 0.00 34.07 3.06
119 120 6.115448 AGCTGTAAGACCTTTGTAATGACT 57.885 37.500 0.00 0.00 34.07 3.41
120 121 7.241042 AGCTGTAAGACCTTTGTAATGACTA 57.759 36.000 0.00 0.00 34.07 2.59
121 122 7.852263 AGCTGTAAGACCTTTGTAATGACTAT 58.148 34.615 0.00 0.00 34.07 2.12
122 123 8.322091 AGCTGTAAGACCTTTGTAATGACTATT 58.678 33.333 0.00 0.00 34.07 1.73
123 124 8.947115 GCTGTAAGACCTTTGTAATGACTATTT 58.053 33.333 0.00 0.00 34.07 1.40
128 129 9.793259 AAGACCTTTGTAATGACTATTTCTGAA 57.207 29.630 0.00 0.00 0.00 3.02
129 130 9.965902 AGACCTTTGTAATGACTATTTCTGAAT 57.034 29.630 0.00 0.00 0.00 2.57
147 148 7.589574 TCTGAATTTTTAATAAAAAGGCCGC 57.410 32.000 15.01 4.98 42.97 6.53
148 149 7.155328 TCTGAATTTTTAATAAAAAGGCCGCA 58.845 30.769 15.01 8.30 42.97 5.69
149 150 7.821846 TCTGAATTTTTAATAAAAAGGCCGCAT 59.178 29.630 15.01 0.00 42.97 4.73
150 151 7.746929 TGAATTTTTAATAAAAAGGCCGCATG 58.253 30.769 15.01 0.00 42.97 4.06
151 152 5.538067 TTTTTAATAAAAAGGCCGCATGC 57.462 34.783 7.91 7.91 36.02 4.06
152 153 3.876274 TTAATAAAAAGGCCGCATGCA 57.124 38.095 19.57 0.00 43.89 3.96
153 154 2.985957 AATAAAAAGGCCGCATGCAT 57.014 40.000 19.57 0.00 43.89 3.96
154 155 2.514205 ATAAAAAGGCCGCATGCATC 57.486 45.000 19.57 8.10 43.89 3.91
155 156 1.180907 TAAAAAGGCCGCATGCATCA 58.819 45.000 19.57 0.00 43.89 3.07
156 157 0.538118 AAAAAGGCCGCATGCATCAT 59.462 45.000 19.57 2.72 43.89 2.45
157 158 0.103572 AAAAGGCCGCATGCATCATC 59.896 50.000 19.57 1.99 43.89 2.92
158 159 1.038681 AAAGGCCGCATGCATCATCA 61.039 50.000 19.57 0.00 43.89 3.07
159 160 0.826256 AAGGCCGCATGCATCATCAT 60.826 50.000 19.57 0.00 43.89 2.45
160 161 1.080772 GGCCGCATGCATCATCATG 60.081 57.895 19.57 0.00 44.93 3.07
161 162 1.520600 GGCCGCATGCATCATCATGA 61.521 55.000 19.57 0.00 44.94 3.07
162 163 0.526211 GCCGCATGCATCATCATGAT 59.474 50.000 19.57 1.18 44.94 2.45
171 172 1.813178 CATCATCATGATGCAGAGGCC 59.187 52.381 27.68 0.00 46.37 5.19
172 173 0.250166 TCATCATGATGCAGAGGCCG 60.250 55.000 27.68 4.34 40.13 6.13
173 174 1.072678 ATCATGATGCAGAGGCCGG 59.927 57.895 7.59 0.00 40.13 6.13
174 175 2.407440 ATCATGATGCAGAGGCCGGG 62.407 60.000 7.59 0.00 40.13 5.73
175 176 3.882326 ATGATGCAGAGGCCGGGG 61.882 66.667 2.18 0.00 40.13 5.73
178 179 4.815973 ATGCAGAGGCCGGGGGTA 62.816 66.667 2.18 0.00 40.13 3.69
179 180 4.815973 TGCAGAGGCCGGGGGTAT 62.816 66.667 2.18 0.00 40.13 2.73
180 181 2.525877 GCAGAGGCCGGGGGTATA 60.526 66.667 2.18 0.00 0.00 1.47
181 182 2.880380 GCAGAGGCCGGGGGTATAC 61.880 68.421 2.18 0.00 0.00 1.47
182 183 2.203466 AGAGGCCGGGGGTATACC 59.797 66.667 13.99 13.99 39.11 2.73
183 184 2.203466 GAGGCCGGGGGTATACCT 59.797 66.667 21.25 0.00 40.03 3.08
184 185 1.912264 GAGGCCGGGGGTATACCTC 60.912 68.421 21.25 17.88 40.14 3.85
219 220 4.776795 AAATGTATCGTTGGTGTTTCCC 57.223 40.909 0.00 0.00 34.77 3.97
220 221 3.713826 ATGTATCGTTGGTGTTTCCCT 57.286 42.857 0.00 0.00 34.77 4.20
221 222 3.048337 TGTATCGTTGGTGTTTCCCTC 57.952 47.619 0.00 0.00 34.77 4.30
222 223 2.635915 TGTATCGTTGGTGTTTCCCTCT 59.364 45.455 0.00 0.00 34.77 3.69
223 224 2.474410 ATCGTTGGTGTTTCCCTCTC 57.526 50.000 0.00 0.00 34.77 3.20
224 225 0.395312 TCGTTGGTGTTTCCCTCTCC 59.605 55.000 0.00 0.00 34.77 3.71
225 226 0.107831 CGTTGGTGTTTCCCTCTCCA 59.892 55.000 0.00 0.00 34.77 3.86
226 227 1.271379 CGTTGGTGTTTCCCTCTCCAT 60.271 52.381 0.00 0.00 34.77 3.41
227 228 2.162681 GTTGGTGTTTCCCTCTCCATG 58.837 52.381 0.00 0.00 34.77 3.66
228 229 1.741028 TGGTGTTTCCCTCTCCATGA 58.259 50.000 0.00 0.00 34.77 3.07
229 230 1.630369 TGGTGTTTCCCTCTCCATGAG 59.370 52.381 0.00 0.00 42.30 2.90
230 231 1.630878 GGTGTTTCCCTCTCCATGAGT 59.369 52.381 0.00 0.00 41.11 3.41
231 232 2.040412 GGTGTTTCCCTCTCCATGAGTT 59.960 50.000 0.00 0.00 41.11 3.01
232 233 3.077359 GTGTTTCCCTCTCCATGAGTTG 58.923 50.000 0.00 0.00 41.11 3.16
233 234 2.087646 GTTTCCCTCTCCATGAGTTGC 58.912 52.381 0.00 0.00 41.11 4.17
234 235 1.361204 TTCCCTCTCCATGAGTTGCA 58.639 50.000 0.00 0.00 41.11 4.08
235 236 1.361204 TCCCTCTCCATGAGTTGCAA 58.639 50.000 0.00 0.00 41.11 4.08
236 237 1.003580 TCCCTCTCCATGAGTTGCAAC 59.996 52.381 22.17 22.17 41.11 4.17
237 238 1.457346 CCTCTCCATGAGTTGCAACC 58.543 55.000 25.62 17.03 41.11 3.77
238 239 1.271543 CCTCTCCATGAGTTGCAACCA 60.272 52.381 25.62 21.74 41.11 3.67
239 240 2.082231 CTCTCCATGAGTTGCAACCAG 58.918 52.381 25.62 12.72 37.99 4.00
240 241 1.171308 CTCCATGAGTTGCAACCAGG 58.829 55.000 25.62 21.87 0.00 4.45
241 242 0.251297 TCCATGAGTTGCAACCAGGG 60.251 55.000 29.94 29.94 34.53 4.45
242 243 1.252904 CCATGAGTTGCAACCAGGGG 61.253 60.000 28.97 23.48 31.72 4.79
243 244 1.077265 ATGAGTTGCAACCAGGGGG 59.923 57.895 25.62 0.00 41.29 5.40
258 259 5.869649 CCAGGGGGTATTTTTATTTCTGG 57.130 43.478 0.00 0.00 34.22 3.86
259 260 5.524535 CCAGGGGGTATTTTTATTTCTGGA 58.475 41.667 0.00 0.00 41.04 3.86
260 261 5.961421 CCAGGGGGTATTTTTATTTCTGGAA 59.039 40.000 0.00 0.00 41.04 3.53
261 262 6.442244 CCAGGGGGTATTTTTATTTCTGGAAA 59.558 38.462 0.00 0.00 41.04 3.13
262 263 7.037945 CCAGGGGGTATTTTTATTTCTGGAAAA 60.038 37.037 0.00 0.00 41.04 2.29
263 264 8.040727 CAGGGGGTATTTTTATTTCTGGAAAAG 58.959 37.037 0.00 0.00 33.56 2.27
264 265 7.737607 AGGGGGTATTTTTATTTCTGGAAAAGT 59.262 33.333 0.00 0.00 33.56 2.66
265 266 8.380099 GGGGGTATTTTTATTTCTGGAAAAGTT 58.620 33.333 0.00 0.00 33.56 2.66
266 267 9.214957 GGGGTATTTTTATTTCTGGAAAAGTTG 57.785 33.333 0.00 0.00 33.56 3.16
267 268 8.717821 GGGTATTTTTATTTCTGGAAAAGTTGC 58.282 33.333 0.00 0.00 33.56 4.17
268 269 9.267084 GGTATTTTTATTTCTGGAAAAGTTGCA 57.733 29.630 0.00 0.00 33.56 4.08
318 319 9.005777 CAACCACCAGTAGTTAGCTTATAAAAA 57.994 33.333 0.00 0.00 0.00 1.94
333 334 8.078596 AGCTTATAAAAACTCTTTGCTTCACTG 58.921 33.333 0.00 0.00 0.00 3.66
399 400 7.093156 TGCCCAATGATAAACCATGATACAAAA 60.093 33.333 0.00 0.00 0.00 2.44
461 463 3.759581 ACAATGATAGATGATGCACCCC 58.240 45.455 0.00 0.00 0.00 4.95
469 471 2.442643 GATGCACCCCCACCCATG 60.443 66.667 0.00 0.00 0.00 3.66
504 506 2.936202 ACCATGCATCATACAAGTCCC 58.064 47.619 0.00 0.00 0.00 4.46
512 514 2.317040 TCATACAAGTCCCGAGATCCC 58.683 52.381 0.00 0.00 0.00 3.85
513 515 1.344763 CATACAAGTCCCGAGATCCCC 59.655 57.143 0.00 0.00 0.00 4.81
514 516 0.398098 TACAAGTCCCGAGATCCCCC 60.398 60.000 0.00 0.00 0.00 5.40
694 696 1.546961 AACACTACAGAGTCGGGAGG 58.453 55.000 7.47 0.00 31.73 4.30
796 798 7.261688 TCTGGAGAATCATAATGGATGCATA 57.738 36.000 0.00 0.00 36.25 3.14
797 799 7.868974 TCTGGAGAATCATAATGGATGCATAT 58.131 34.615 0.00 0.00 36.25 1.78
896 903 3.244526 TGCAAGCAATCCTTCAGACAGTA 60.245 43.478 0.00 0.00 0.00 2.74
1001 1008 2.650116 CCCTCACTCACTCCCCACG 61.650 68.421 0.00 0.00 0.00 4.94
1002 1009 2.650116 CCTCACTCACTCCCCACGG 61.650 68.421 0.00 0.00 0.00 4.94
1024 1035 5.475909 CGGGTAATATAGACTACTTGGAGCA 59.524 44.000 0.00 0.00 0.00 4.26
1038 1049 1.518903 GGAGCAAAGTCCAGCACACC 61.519 60.000 0.00 0.00 36.51 4.16
1041 1052 1.903404 CAAAGTCCAGCACACCCCC 60.903 63.158 0.00 0.00 0.00 5.40
1084 1096 2.044252 CTGGAGCTTGCCATGGCT 60.044 61.111 35.53 17.44 42.51 4.75
1397 1415 0.177836 AGCTTGGTTGTTTGGTTGGC 59.822 50.000 0.00 0.00 0.00 4.52
1647 1665 2.123251 TCCGGCTCATCCTCCTCC 60.123 66.667 0.00 0.00 0.00 4.30
1648 1666 2.123077 CCGGCTCATCCTCCTCCT 60.123 66.667 0.00 0.00 0.00 3.69
1649 1667 2.206536 CCGGCTCATCCTCCTCCTC 61.207 68.421 0.00 0.00 0.00 3.71
1650 1668 2.206536 CGGCTCATCCTCCTCCTCC 61.207 68.421 0.00 0.00 0.00 4.30
1651 1669 1.235696 GGCTCATCCTCCTCCTCCT 59.764 63.158 0.00 0.00 0.00 3.69
1652 1670 0.831711 GGCTCATCCTCCTCCTCCTC 60.832 65.000 0.00 0.00 0.00 3.71
1840 1858 5.294060 GGCTCAGATCTTGTCAGATTTTCTC 59.706 44.000 0.00 0.00 40.14 2.87
1983 2202 1.641577 GATGGTTGTAGTCGAGGTGC 58.358 55.000 0.00 0.00 0.00 5.01
1985 2204 1.116536 TGGTTGTAGTCGAGGTGCCA 61.117 55.000 0.00 0.00 0.00 4.92
1986 2205 0.034337 GGTTGTAGTCGAGGTGCCAA 59.966 55.000 0.00 0.00 0.00 4.52
1987 2206 1.541670 GGTTGTAGTCGAGGTGCCAAA 60.542 52.381 0.00 0.00 0.00 3.28
1988 2207 2.423577 GTTGTAGTCGAGGTGCCAAAT 58.576 47.619 0.00 0.00 0.00 2.32
1989 2208 2.812011 GTTGTAGTCGAGGTGCCAAATT 59.188 45.455 0.00 0.00 0.00 1.82
1997 2216 5.476945 AGTCGAGGTGCCAAATTAAAGATTT 59.523 36.000 0.00 0.00 0.00 2.17
2025 2244 3.255888 GTGAATTGAACAAGAACTCCCCC 59.744 47.826 0.00 0.00 0.00 5.40
2045 2264 1.399440 CGGTGCTCTGGTTGATGATTG 59.601 52.381 0.00 0.00 0.00 2.67
2046 2265 2.440409 GGTGCTCTGGTTGATGATTGT 58.560 47.619 0.00 0.00 0.00 2.71
2047 2266 3.609853 GGTGCTCTGGTTGATGATTGTA 58.390 45.455 0.00 0.00 0.00 2.41
2049 2268 5.368145 GGTGCTCTGGTTGATGATTGTATA 58.632 41.667 0.00 0.00 0.00 1.47
2050 2269 6.000219 GGTGCTCTGGTTGATGATTGTATAT 59.000 40.000 0.00 0.00 0.00 0.86
2052 2271 7.358066 GTGCTCTGGTTGATGATTGTATATTG 58.642 38.462 0.00 0.00 0.00 1.90
2053 2272 6.016860 TGCTCTGGTTGATGATTGTATATTGC 60.017 38.462 0.00 0.00 0.00 3.56
2056 2275 9.223099 CTCTGGTTGATGATTGTATATTGCATA 57.777 33.333 0.00 0.00 0.00 3.14
2057 2276 9.743581 TCTGGTTGATGATTGTATATTGCATAT 57.256 29.630 0.00 0.00 0.00 1.78
2084 2344 2.276868 GTGTGCGCGCATGTGATC 60.277 61.111 38.62 23.28 0.00 2.92
2087 2347 3.852203 TGCGCGCATGTGATCGTG 61.852 61.111 33.09 5.00 39.00 4.35
2092 2352 2.528743 CGCATGTGATCGTGGAGGC 61.529 63.158 0.00 0.00 0.00 4.70
2093 2353 1.153289 GCATGTGATCGTGGAGGCT 60.153 57.895 0.00 0.00 0.00 4.58
2094 2354 1.434622 GCATGTGATCGTGGAGGCTG 61.435 60.000 0.00 0.00 0.00 4.85
2095 2355 1.153289 ATGTGATCGTGGAGGCTGC 60.153 57.895 0.00 0.00 0.00 5.25
2096 2356 1.902765 ATGTGATCGTGGAGGCTGCA 61.903 55.000 3.93 3.93 0.00 4.41
2097 2357 1.375908 GTGATCGTGGAGGCTGCAA 60.376 57.895 11.29 0.00 0.00 4.08
2098 2358 1.375908 TGATCGTGGAGGCTGCAAC 60.376 57.895 11.29 4.39 0.00 4.17
2099 2359 1.375908 GATCGTGGAGGCTGCAACA 60.376 57.895 11.29 0.00 0.00 3.33
2100 2360 0.745845 GATCGTGGAGGCTGCAACAT 60.746 55.000 11.29 5.39 0.00 2.71
2101 2361 1.028330 ATCGTGGAGGCTGCAACATG 61.028 55.000 11.29 1.20 0.00 3.21
2102 2362 1.672030 CGTGGAGGCTGCAACATGA 60.672 57.895 11.29 0.00 0.00 3.07
2103 2363 1.236616 CGTGGAGGCTGCAACATGAA 61.237 55.000 11.29 0.00 0.00 2.57
2104 2364 0.242017 GTGGAGGCTGCAACATGAAC 59.758 55.000 11.29 0.00 0.00 3.18
2105 2365 0.178995 TGGAGGCTGCAACATGAACA 60.179 50.000 6.12 0.00 0.00 3.18
2106 2366 1.180029 GGAGGCTGCAACATGAACAT 58.820 50.000 0.00 0.00 0.00 2.71
2107 2367 1.135199 GGAGGCTGCAACATGAACATG 60.135 52.381 12.43 12.43 44.15 3.21
2108 2368 0.892755 AGGCTGCAACATGAACATGG 59.107 50.000 17.25 3.82 42.91 3.66
2109 2369 0.738412 GGCTGCAACATGAACATGGC 60.738 55.000 17.25 12.52 42.91 4.40
2110 2370 0.038067 GCTGCAACATGAACATGGCA 60.038 50.000 17.25 15.64 42.91 4.92
2111 2371 1.990799 CTGCAACATGAACATGGCAG 58.009 50.000 21.57 21.57 42.87 4.85
2112 2372 1.271379 CTGCAACATGAACATGGCAGT 59.729 47.619 24.13 4.60 43.17 4.40
2113 2373 2.488937 CTGCAACATGAACATGGCAGTA 59.511 45.455 24.13 12.32 43.17 2.74
2114 2374 2.889678 TGCAACATGAACATGGCAGTAA 59.110 40.909 17.25 0.00 42.91 2.24
2115 2375 3.244976 GCAACATGAACATGGCAGTAAC 58.755 45.455 17.25 0.00 42.91 2.50
2116 2376 3.305267 GCAACATGAACATGGCAGTAACA 60.305 43.478 17.25 0.00 42.91 2.41
2117 2377 4.618927 GCAACATGAACATGGCAGTAACAT 60.619 41.667 17.25 0.00 42.91 2.71
2155 2426 1.227999 GCGTGGTGACAGCTAAGCAA 61.228 55.000 6.17 0.00 44.46 3.91
2156 2427 0.792640 CGTGGTGACAGCTAAGCAAG 59.207 55.000 6.17 0.00 44.46 4.01
2157 2428 1.873903 CGTGGTGACAGCTAAGCAAGT 60.874 52.381 6.17 0.00 44.46 3.16
2158 2429 1.801178 GTGGTGACAGCTAAGCAAGTC 59.199 52.381 6.17 0.00 44.46 3.01
2159 2430 1.071605 GGTGACAGCTAAGCAAGTCG 58.928 55.000 0.00 0.00 38.20 4.18
2160 2431 1.071605 GTGACAGCTAAGCAAGTCGG 58.928 55.000 0.00 0.00 38.20 4.79
2161 2432 0.679505 TGACAGCTAAGCAAGTCGGT 59.320 50.000 0.00 0.00 38.20 4.69
2162 2433 1.071605 GACAGCTAAGCAAGTCGGTG 58.928 55.000 0.00 0.00 0.00 4.94
2176 2447 1.132643 GTCGGTGAGCTCTCGTACATT 59.867 52.381 22.38 0.00 0.00 2.71
2242 2518 1.665442 GTTTGCCACCATGTCCACC 59.335 57.895 0.00 0.00 0.00 4.61
2243 2519 0.827507 GTTTGCCACCATGTCCACCT 60.828 55.000 0.00 0.00 0.00 4.00
2311 2587 7.388776 CACATGCTACAGTACATATAGGCATTT 59.611 37.037 0.00 0.00 37.11 2.32
2337 2635 8.324306 TCTCTCTGAATTTCAATGTAGACCATT 58.676 33.333 0.01 0.00 44.73 3.16
2338 2636 8.868522 TCTCTGAATTTCAATGTAGACCATTT 57.131 30.769 0.01 0.00 41.93 2.32
2339 2637 9.300681 TCTCTGAATTTCAATGTAGACCATTTT 57.699 29.630 0.01 0.00 41.93 1.82
2411 2712 2.223971 GGCGACGAAAATCCCTGATAGA 60.224 50.000 0.00 0.00 0.00 1.98
2415 2716 4.449068 CGACGAAAATCCCTGATAGATTGG 59.551 45.833 0.00 0.00 34.23 3.16
2519 2830 5.647589 CATTTCACGGCTACTAGTTACTCA 58.352 41.667 0.00 0.00 0.00 3.41
2568 2886 1.590238 CCTCGCACTGAACATCGATTC 59.410 52.381 0.00 0.00 0.00 2.52
2579 2897 4.994217 TGAACATCGATTCAGTGCACTAAA 59.006 37.500 21.20 12.99 33.62 1.85
2580 2898 5.468409 TGAACATCGATTCAGTGCACTAAAA 59.532 36.000 21.20 17.03 33.62 1.52
2697 3017 0.326264 CCTGCCAGTTTGAGCTACCT 59.674 55.000 0.00 0.00 0.00 3.08
2744 3064 2.159379 GCTAGCGATGTTCCCCTTTTTG 60.159 50.000 0.00 0.00 0.00 2.44
2810 3133 6.478512 TTTTTGAACTGGCAAAGGATTAGT 57.521 33.333 0.00 0.00 38.80 2.24
2811 3134 6.478512 TTTTGAACTGGCAAAGGATTAGTT 57.521 33.333 0.00 0.00 38.80 2.24
2812 3135 6.478512 TTTGAACTGGCAAAGGATTAGTTT 57.521 33.333 0.00 0.00 33.16 2.66
2813 3136 5.452078 TGAACTGGCAAAGGATTAGTTTG 57.548 39.130 0.00 0.00 37.85 2.93
2814 3137 4.892934 TGAACTGGCAAAGGATTAGTTTGT 59.107 37.500 0.00 0.00 37.25 2.83
2815 3138 5.362430 TGAACTGGCAAAGGATTAGTTTGTT 59.638 36.000 0.00 0.00 37.25 2.83
2816 3139 5.200368 ACTGGCAAAGGATTAGTTTGTTG 57.800 39.130 0.00 0.00 37.25 3.33
2817 3140 4.892934 ACTGGCAAAGGATTAGTTTGTTGA 59.107 37.500 0.00 0.00 37.25 3.18
2818 3141 5.010012 ACTGGCAAAGGATTAGTTTGTTGAG 59.990 40.000 0.00 0.00 37.25 3.02
2819 3142 4.280677 TGGCAAAGGATTAGTTTGTTGAGG 59.719 41.667 0.00 0.00 37.25 3.86
2820 3143 4.237724 GCAAAGGATTAGTTTGTTGAGGC 58.762 43.478 0.00 0.00 37.25 4.70
2821 3144 4.809673 CAAAGGATTAGTTTGTTGAGGCC 58.190 43.478 0.00 0.00 31.44 5.19
2822 3145 2.711542 AGGATTAGTTTGTTGAGGCCG 58.288 47.619 0.00 0.00 0.00 6.13
2823 3146 2.304761 AGGATTAGTTTGTTGAGGCCGA 59.695 45.455 0.00 0.00 0.00 5.54
2824 3147 3.054361 AGGATTAGTTTGTTGAGGCCGAT 60.054 43.478 0.00 0.00 0.00 4.18
2825 3148 4.163458 AGGATTAGTTTGTTGAGGCCGATA 59.837 41.667 0.00 0.00 0.00 2.92
2826 3149 5.063880 GGATTAGTTTGTTGAGGCCGATAT 58.936 41.667 0.00 0.00 0.00 1.63
2827 3150 5.049405 GGATTAGTTTGTTGAGGCCGATATG 60.049 44.000 0.00 0.00 0.00 1.78
2828 3151 2.643551 AGTTTGTTGAGGCCGATATGG 58.356 47.619 0.00 0.00 42.50 2.74
2843 3166 5.528870 CCGATATGGCCTTCAAATTTTACC 58.471 41.667 3.32 0.00 0.00 2.85
2844 3167 5.068460 CCGATATGGCCTTCAAATTTTACCA 59.932 40.000 3.32 0.00 0.00 3.25
2845 3168 6.239289 CCGATATGGCCTTCAAATTTTACCAT 60.239 38.462 3.32 10.38 39.62 3.55
2846 3169 7.040062 CCGATATGGCCTTCAAATTTTACCATA 60.040 37.037 3.32 12.93 41.51 2.74
2847 3170 7.807907 CGATATGGCCTTCAAATTTTACCATAC 59.192 37.037 3.32 8.70 40.45 2.39
2848 3171 8.782137 ATATGGCCTTCAAATTTTACCATACT 57.218 30.769 3.32 4.91 40.45 2.12
2849 3172 6.926630 TGGCCTTCAAATTTTACCATACTT 57.073 33.333 3.32 0.00 0.00 2.24
2850 3173 8.602472 ATGGCCTTCAAATTTTACCATACTTA 57.398 30.769 3.32 0.00 34.74 2.24
2851 3174 8.423906 TGGCCTTCAAATTTTACCATACTTAA 57.576 30.769 3.32 0.00 0.00 1.85
2852 3175 8.871125 TGGCCTTCAAATTTTACCATACTTAAA 58.129 29.630 3.32 0.00 0.00 1.52
2853 3176 9.713713 GGCCTTCAAATTTTACCATACTTAAAA 57.286 29.630 0.00 0.00 33.93 1.52
2863 3186 9.910267 TTTTACCATACTTAAAATCTAGGGTCC 57.090 33.333 0.00 0.00 0.00 4.46
2864 3187 6.511017 ACCATACTTAAAATCTAGGGTCCC 57.489 41.667 0.00 0.00 0.00 4.46
2865 3188 5.071384 ACCATACTTAAAATCTAGGGTCCCG 59.929 44.000 0.99 0.00 0.00 5.14
2866 3189 5.306160 CCATACTTAAAATCTAGGGTCCCGA 59.694 44.000 0.99 0.00 0.00 5.14
2867 3190 6.013639 CCATACTTAAAATCTAGGGTCCCGAT 60.014 42.308 0.99 0.00 0.00 4.18
2868 3191 7.179694 CCATACTTAAAATCTAGGGTCCCGATA 59.820 40.741 0.99 0.00 0.00 2.92
2869 3192 8.591072 CATACTTAAAATCTAGGGTCCCGATAA 58.409 37.037 0.99 0.00 0.00 1.75
2870 3193 6.824553 ACTTAAAATCTAGGGTCCCGATAAC 58.175 40.000 0.99 0.00 0.00 1.89
2871 3194 6.614496 ACTTAAAATCTAGGGTCCCGATAACT 59.386 38.462 0.99 0.00 0.00 2.24
2872 3195 4.957684 AAATCTAGGGTCCCGATAACTG 57.042 45.455 0.99 0.00 0.00 3.16
2873 3196 1.700955 TCTAGGGTCCCGATAACTGC 58.299 55.000 0.99 0.00 0.00 4.40
2874 3197 0.680061 CTAGGGTCCCGATAACTGCC 59.320 60.000 0.99 0.00 0.00 4.85
2875 3198 0.031917 TAGGGTCCCGATAACTGCCA 60.032 55.000 0.99 0.00 0.00 4.92
2876 3199 1.153229 GGGTCCCGATAACTGCCAC 60.153 63.158 0.00 0.00 0.00 5.01
2877 3200 1.600107 GGTCCCGATAACTGCCACA 59.400 57.895 0.00 0.00 0.00 4.17
2878 3201 0.743345 GGTCCCGATAACTGCCACAC 60.743 60.000 0.00 0.00 0.00 3.82
2879 3202 1.082117 GTCCCGATAACTGCCACACG 61.082 60.000 0.00 0.00 0.00 4.49
2880 3203 1.079405 CCCGATAACTGCCACACGT 60.079 57.895 0.00 0.00 0.00 4.49
2881 3204 1.358725 CCCGATAACTGCCACACGTG 61.359 60.000 15.48 15.48 0.00 4.49
2882 3205 0.669318 CCGATAACTGCCACACGTGT 60.669 55.000 17.22 17.22 0.00 4.49
2883 3206 1.403116 CCGATAACTGCCACACGTGTA 60.403 52.381 22.90 5.00 0.00 2.90
2884 3207 2.330286 CGATAACTGCCACACGTGTAA 58.670 47.619 22.90 9.26 0.00 2.41
2885 3208 2.927477 CGATAACTGCCACACGTGTAAT 59.073 45.455 22.90 6.32 0.00 1.89
2886 3209 3.241963 CGATAACTGCCACACGTGTAATG 60.242 47.826 22.90 13.85 0.00 1.90
2887 3210 1.961793 AACTGCCACACGTGTAATGT 58.038 45.000 22.90 14.52 35.61 2.71
2888 3211 2.823924 ACTGCCACACGTGTAATGTA 57.176 45.000 22.90 11.35 31.53 2.29
2889 3212 3.328382 ACTGCCACACGTGTAATGTAT 57.672 42.857 22.90 2.66 31.53 2.29
2890 3213 3.259064 ACTGCCACACGTGTAATGTATC 58.741 45.455 22.90 6.01 31.53 2.24
2891 3214 2.263945 TGCCACACGTGTAATGTATCG 58.736 47.619 22.90 6.13 31.53 2.92
2892 3215 1.591158 GCCACACGTGTAATGTATCGG 59.409 52.381 22.90 16.45 31.53 4.18
2893 3216 2.198406 CCACACGTGTAATGTATCGGG 58.802 52.381 22.90 11.21 31.53 5.14
2894 3217 2.417651 CCACACGTGTAATGTATCGGGT 60.418 50.000 22.90 0.00 40.58 5.28
2895 3218 2.883574 ACACGTGTAATGTATCGGGTG 58.116 47.619 21.98 0.00 38.50 4.61
2896 3219 2.492881 ACACGTGTAATGTATCGGGTGA 59.507 45.455 21.98 0.00 38.50 4.02
2897 3220 3.131577 ACACGTGTAATGTATCGGGTGAT 59.868 43.478 21.98 0.00 38.50 3.06
2898 3221 4.116961 CACGTGTAATGTATCGGGTGATT 58.883 43.478 7.58 0.00 31.53 2.57
2899 3222 4.026062 CACGTGTAATGTATCGGGTGATTG 60.026 45.833 7.58 0.00 31.53 2.67
2900 3223 4.116961 CGTGTAATGTATCGGGTGATTGT 58.883 43.478 0.00 0.00 35.99 2.71
2901 3224 4.026062 CGTGTAATGTATCGGGTGATTGTG 60.026 45.833 0.00 0.00 35.99 3.33
2902 3225 3.874543 TGTAATGTATCGGGTGATTGTGC 59.125 43.478 0.00 0.00 35.99 4.57
2903 3226 3.281727 AATGTATCGGGTGATTGTGCT 57.718 42.857 0.00 0.00 35.99 4.40
2904 3227 2.022764 TGTATCGGGTGATTGTGCTG 57.977 50.000 0.00 0.00 35.99 4.41
2905 3228 0.657840 GTATCGGGTGATTGTGCTGC 59.342 55.000 0.00 0.00 35.99 5.25
2906 3229 0.251634 TATCGGGTGATTGTGCTGCA 59.748 50.000 0.00 0.00 35.99 4.41
2907 3230 1.308069 ATCGGGTGATTGTGCTGCAC 61.308 55.000 25.15 25.15 34.56 4.57
2908 3231 2.562912 GGGTGATTGTGCTGCACG 59.437 61.111 25.88 0.00 37.14 5.34
2909 3232 2.126734 GGTGATTGTGCTGCACGC 60.127 61.111 25.88 18.12 37.14 5.34
2910 3233 2.126734 GTGATTGTGCTGCACGCC 60.127 61.111 25.88 17.50 37.14 5.68
2911 3234 2.281692 TGATTGTGCTGCACGCCT 60.282 55.556 25.88 13.86 37.14 5.52
2912 3235 1.898094 TGATTGTGCTGCACGCCTT 60.898 52.632 25.88 11.60 37.14 4.35
2913 3236 1.443194 GATTGTGCTGCACGCCTTG 60.443 57.895 25.88 0.00 37.14 3.61
2914 3237 2.133742 GATTGTGCTGCACGCCTTGT 62.134 55.000 25.88 9.26 37.14 3.16
2915 3238 0.888736 ATTGTGCTGCACGCCTTGTA 60.889 50.000 25.88 5.48 37.14 2.41
2916 3239 0.888736 TTGTGCTGCACGCCTTGTAT 60.889 50.000 25.88 0.00 37.14 2.29
2917 3240 1.135315 GTGCTGCACGCCTTGTATG 59.865 57.895 17.93 0.00 38.05 2.39
2918 3241 2.039974 TGCTGCACGCCTTGTATGG 61.040 57.895 0.00 0.00 38.05 2.74
2928 3251 2.267174 CCTTGTATGGCATGGAGAGG 57.733 55.000 10.98 8.27 43.04 3.69
2929 3252 1.770658 CCTTGTATGGCATGGAGAGGA 59.229 52.381 10.98 0.00 43.04 3.71
2930 3253 2.173356 CCTTGTATGGCATGGAGAGGAA 59.827 50.000 10.98 0.00 43.04 3.36
2931 3254 3.209410 CTTGTATGGCATGGAGAGGAAC 58.791 50.000 10.98 0.00 0.00 3.62
2932 3255 1.490490 TGTATGGCATGGAGAGGAACC 59.510 52.381 10.98 0.00 0.00 3.62
2933 3256 1.140312 TATGGCATGGAGAGGAACCC 58.860 55.000 10.98 0.00 0.00 4.11
2934 3257 1.987807 ATGGCATGGAGAGGAACCCG 61.988 60.000 0.00 0.00 0.00 5.28
2935 3258 2.514824 GCATGGAGAGGAACCCGC 60.515 66.667 0.00 0.00 0.00 6.13
2936 3259 2.190578 CATGGAGAGGAACCCGCC 59.809 66.667 0.00 0.00 0.00 6.13
2937 3260 3.090532 ATGGAGAGGAACCCGCCC 61.091 66.667 0.00 0.00 0.00 6.13
2971 3294 4.460873 GCGCGTAAAGCCACAGCC 62.461 66.667 8.43 0.00 44.76 4.85
2972 3295 3.799755 CGCGTAAAGCCACAGCCC 61.800 66.667 0.00 0.00 44.76 5.19
2973 3296 3.799755 GCGTAAAGCCACAGCCCG 61.800 66.667 0.00 0.00 41.25 6.13
2974 3297 3.799755 CGTAAAGCCACAGCCCGC 61.800 66.667 0.00 0.00 41.25 6.13
2975 3298 2.671619 GTAAAGCCACAGCCCGCA 60.672 61.111 0.00 0.00 41.25 5.69
2976 3299 2.671619 TAAAGCCACAGCCCGCAC 60.672 61.111 0.00 0.00 41.25 5.34
2991 3314 4.901123 CACGTCCGGTGTGTGCCA 62.901 66.667 17.74 0.00 41.89 4.92
2992 3315 4.164087 ACGTCCGGTGTGTGCCAA 62.164 61.111 0.00 0.00 0.00 4.52
2993 3316 2.897846 CGTCCGGTGTGTGCCAAA 60.898 61.111 0.00 0.00 0.00 3.28
2994 3317 2.719354 GTCCGGTGTGTGCCAAAC 59.281 61.111 0.00 0.00 0.00 2.93
2995 3318 2.517402 TCCGGTGTGTGCCAAACC 60.517 61.111 0.00 4.82 38.33 3.27
2996 3319 3.601685 CCGGTGTGTGCCAAACCC 61.602 66.667 8.47 0.00 38.47 4.11
2997 3320 3.959975 CGGTGTGTGCCAAACCCG 61.960 66.667 8.47 1.35 38.47 5.28
2998 3321 4.279043 GGTGTGTGCCAAACCCGC 62.279 66.667 3.73 0.00 35.80 6.13
2999 3322 4.279043 GTGTGTGCCAAACCCGCC 62.279 66.667 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.279851 TTATGCGACCGCCATCCG 60.280 61.111 12.08 0.00 41.09 4.18
1 2 1.498865 CTGTTATGCGACCGCCATCC 61.499 60.000 12.08 0.00 41.09 3.51
2 3 1.498865 CCTGTTATGCGACCGCCATC 61.499 60.000 12.08 1.22 41.09 3.51
3 4 1.523711 CCTGTTATGCGACCGCCAT 60.524 57.895 12.08 8.00 41.09 4.40
4 5 1.966901 ATCCTGTTATGCGACCGCCA 61.967 55.000 12.08 1.69 41.09 5.69
5 6 0.032952 TATCCTGTTATGCGACCGCC 59.967 55.000 12.08 0.00 41.09 6.13
6 7 1.419374 CTATCCTGTTATGCGACCGC 58.581 55.000 7.53 7.53 42.35 5.68
7 8 1.611977 TCCTATCCTGTTATGCGACCG 59.388 52.381 0.00 0.00 0.00 4.79
8 9 2.628657 ACTCCTATCCTGTTATGCGACC 59.371 50.000 0.00 0.00 0.00 4.79
9 10 3.570550 AGACTCCTATCCTGTTATGCGAC 59.429 47.826 0.00 0.00 0.00 5.19
10 11 3.833732 AGACTCCTATCCTGTTATGCGA 58.166 45.455 0.00 0.00 0.00 5.10
11 12 5.004448 TCTAGACTCCTATCCTGTTATGCG 58.996 45.833 0.00 0.00 0.00 4.73
12 13 6.242396 TCTCTAGACTCCTATCCTGTTATGC 58.758 44.000 0.00 0.00 0.00 3.14
13 14 6.374333 GCTCTCTAGACTCCTATCCTGTTATG 59.626 46.154 0.00 0.00 0.00 1.90
14 15 6.274672 AGCTCTCTAGACTCCTATCCTGTTAT 59.725 42.308 0.00 0.00 0.00 1.89
15 16 5.609284 AGCTCTCTAGACTCCTATCCTGTTA 59.391 44.000 0.00 0.00 0.00 2.41
16 17 4.415512 AGCTCTCTAGACTCCTATCCTGTT 59.584 45.833 0.00 0.00 0.00 3.16
17 18 3.980698 AGCTCTCTAGACTCCTATCCTGT 59.019 47.826 0.00 0.00 0.00 4.00
18 19 4.640771 AGCTCTCTAGACTCCTATCCTG 57.359 50.000 0.00 0.00 0.00 3.86
19 20 4.415512 ACAAGCTCTCTAGACTCCTATCCT 59.584 45.833 0.00 0.00 0.00 3.24
20 21 4.725490 ACAAGCTCTCTAGACTCCTATCC 58.275 47.826 0.00 0.00 0.00 2.59
21 22 4.760204 GGACAAGCTCTCTAGACTCCTATC 59.240 50.000 0.00 0.00 0.00 2.08
22 23 4.415512 AGGACAAGCTCTCTAGACTCCTAT 59.584 45.833 0.00 0.00 0.00 2.57
23 24 3.783642 AGGACAAGCTCTCTAGACTCCTA 59.216 47.826 0.00 0.00 0.00 2.94
24 25 2.580783 AGGACAAGCTCTCTAGACTCCT 59.419 50.000 0.00 0.00 0.00 3.69
25 26 3.012934 AGGACAAGCTCTCTAGACTCC 57.987 52.381 0.00 0.00 0.00 3.85
26 27 5.190677 AGTAAGGACAAGCTCTCTAGACTC 58.809 45.833 0.00 0.00 0.00 3.36
27 28 5.187621 AGTAAGGACAAGCTCTCTAGACT 57.812 43.478 0.00 0.00 0.00 3.24
28 29 6.768861 TGATAGTAAGGACAAGCTCTCTAGAC 59.231 42.308 0.00 0.00 0.00 2.59
29 30 6.768861 GTGATAGTAAGGACAAGCTCTCTAGA 59.231 42.308 0.00 0.00 0.00 2.43
30 31 6.016610 GGTGATAGTAAGGACAAGCTCTCTAG 60.017 46.154 0.00 0.00 0.00 2.43
31 32 5.828859 GGTGATAGTAAGGACAAGCTCTCTA 59.171 44.000 0.00 0.00 0.00 2.43
32 33 4.647399 GGTGATAGTAAGGACAAGCTCTCT 59.353 45.833 0.00 0.00 0.00 3.10
33 34 4.402793 TGGTGATAGTAAGGACAAGCTCTC 59.597 45.833 0.00 0.00 0.00 3.20
34 35 4.353777 TGGTGATAGTAAGGACAAGCTCT 58.646 43.478 0.00 0.00 0.00 4.09
35 36 4.737855 TGGTGATAGTAAGGACAAGCTC 57.262 45.455 0.00 0.00 0.00 4.09
36 37 5.070580 GGTATGGTGATAGTAAGGACAAGCT 59.929 44.000 0.00 0.00 0.00 3.74
37 38 5.298347 GGTATGGTGATAGTAAGGACAAGC 58.702 45.833 0.00 0.00 0.00 4.01
38 39 5.509163 CCGGTATGGTGATAGTAAGGACAAG 60.509 48.000 0.00 0.00 0.00 3.16
39 40 4.342951 CCGGTATGGTGATAGTAAGGACAA 59.657 45.833 0.00 0.00 0.00 3.18
40 41 3.893200 CCGGTATGGTGATAGTAAGGACA 59.107 47.826 0.00 0.00 0.00 4.02
41 42 4.516365 CCGGTATGGTGATAGTAAGGAC 57.484 50.000 0.00 0.00 0.00 3.85
54 55 2.351350 GCACAAAAGACAACCGGTATGG 60.351 50.000 8.00 2.89 46.41 2.74
55 56 2.552315 AGCACAAAAGACAACCGGTATG 59.448 45.455 8.00 11.44 0.00 2.39
56 57 2.858745 AGCACAAAAGACAACCGGTAT 58.141 42.857 8.00 0.00 0.00 2.73
57 58 2.335316 AGCACAAAAGACAACCGGTA 57.665 45.000 8.00 0.00 0.00 4.02
58 59 1.470051 AAGCACAAAAGACAACCGGT 58.530 45.000 0.00 0.00 0.00 5.28
59 60 2.577449 AAAGCACAAAAGACAACCGG 57.423 45.000 0.00 0.00 0.00 5.28
60 61 6.410038 CAAAATAAAGCACAAAAGACAACCG 58.590 36.000 0.00 0.00 0.00 4.44
61 62 6.037062 AGCAAAATAAAGCACAAAAGACAACC 59.963 34.615 0.00 0.00 0.00 3.77
62 63 7.003939 AGCAAAATAAAGCACAAAAGACAAC 57.996 32.000 0.00 0.00 0.00 3.32
63 64 6.257630 GGAGCAAAATAAAGCACAAAAGACAA 59.742 34.615 0.00 0.00 0.00 3.18
64 65 5.752955 GGAGCAAAATAAAGCACAAAAGACA 59.247 36.000 0.00 0.00 0.00 3.41
65 66 5.107875 CGGAGCAAAATAAAGCACAAAAGAC 60.108 40.000 0.00 0.00 0.00 3.01
66 67 4.981674 CGGAGCAAAATAAAGCACAAAAGA 59.018 37.500 0.00 0.00 0.00 2.52
67 68 4.744631 ACGGAGCAAAATAAAGCACAAAAG 59.255 37.500 0.00 0.00 0.00 2.27
68 69 4.688021 ACGGAGCAAAATAAAGCACAAAA 58.312 34.783 0.00 0.00 0.00 2.44
69 70 4.314740 ACGGAGCAAAATAAAGCACAAA 57.685 36.364 0.00 0.00 0.00 2.83
70 71 4.314740 AACGGAGCAAAATAAAGCACAA 57.685 36.364 0.00 0.00 0.00 3.33
71 72 4.047822 CAAACGGAGCAAAATAAAGCACA 58.952 39.130 0.00 0.00 0.00 4.57
72 73 3.121025 GCAAACGGAGCAAAATAAAGCAC 60.121 43.478 0.00 0.00 0.00 4.40
73 74 3.056304 GCAAACGGAGCAAAATAAAGCA 58.944 40.909 0.00 0.00 0.00 3.91
74 75 2.090503 CGCAAACGGAGCAAAATAAAGC 59.909 45.455 0.00 0.00 34.97 3.51
75 76 3.560503 TCGCAAACGGAGCAAAATAAAG 58.439 40.909 0.00 0.00 40.63 1.85
76 77 3.560503 CTCGCAAACGGAGCAAAATAAA 58.439 40.909 0.00 0.00 40.63 1.40
77 78 2.667171 GCTCGCAAACGGAGCAAAATAA 60.667 45.455 8.77 0.00 40.14 1.40
78 79 1.135803 GCTCGCAAACGGAGCAAAATA 60.136 47.619 8.77 0.00 40.14 1.40
79 80 0.387239 GCTCGCAAACGGAGCAAAAT 60.387 50.000 8.77 0.00 40.14 1.82
80 81 1.008995 GCTCGCAAACGGAGCAAAA 60.009 52.632 8.77 0.00 40.14 2.44
81 82 1.891919 AGCTCGCAAACGGAGCAAA 60.892 52.632 15.27 0.00 41.70 3.68
82 83 2.280797 AGCTCGCAAACGGAGCAA 60.281 55.556 15.27 0.00 41.70 3.91
83 84 2.428960 TACAGCTCGCAAACGGAGCA 62.429 55.000 15.27 0.00 41.70 4.26
84 85 1.289109 TTACAGCTCGCAAACGGAGC 61.289 55.000 5.69 5.69 40.47 4.70
85 86 0.716108 CTTACAGCTCGCAAACGGAG 59.284 55.000 0.00 0.00 40.63 4.63
86 87 0.315886 TCTTACAGCTCGCAAACGGA 59.684 50.000 0.00 0.00 40.63 4.69
87 88 0.438830 GTCTTACAGCTCGCAAACGG 59.561 55.000 0.00 0.00 40.63 4.44
88 89 0.438830 GGTCTTACAGCTCGCAAACG 59.561 55.000 0.00 0.00 42.01 3.60
89 90 1.797025 AGGTCTTACAGCTCGCAAAC 58.203 50.000 0.00 0.00 0.00 2.93
90 91 2.543777 AAGGTCTTACAGCTCGCAAA 57.456 45.000 0.00 0.00 30.18 3.68
91 92 2.143122 CAAAGGTCTTACAGCTCGCAA 58.857 47.619 0.00 0.00 30.18 4.85
92 93 1.070134 ACAAAGGTCTTACAGCTCGCA 59.930 47.619 0.00 0.00 30.18 5.10
93 94 1.797025 ACAAAGGTCTTACAGCTCGC 58.203 50.000 0.00 0.00 30.18 5.03
94 95 5.062308 GTCATTACAAAGGTCTTACAGCTCG 59.938 44.000 0.00 0.00 30.18 5.03
95 96 6.166982 AGTCATTACAAAGGTCTTACAGCTC 58.833 40.000 0.00 0.00 30.18 4.09
96 97 6.115448 AGTCATTACAAAGGTCTTACAGCT 57.885 37.500 0.00 0.00 0.00 4.24
97 98 8.494016 AATAGTCATTACAAAGGTCTTACAGC 57.506 34.615 0.00 0.00 0.00 4.40
102 103 9.793259 TTCAGAAATAGTCATTACAAAGGTCTT 57.207 29.630 0.00 0.00 0.00 3.01
103 104 9.965902 ATTCAGAAATAGTCATTACAAAGGTCT 57.034 29.630 0.00 0.00 0.00 3.85
121 122 8.499967 GCGGCCTTTTTATTAAAAATTCAGAAA 58.500 29.630 13.27 0.00 39.43 2.52
122 123 7.657761 TGCGGCCTTTTTATTAAAAATTCAGAA 59.342 29.630 13.27 3.55 39.43 3.02
123 124 7.155328 TGCGGCCTTTTTATTAAAAATTCAGA 58.845 30.769 13.27 0.00 39.43 3.27
124 125 7.357951 TGCGGCCTTTTTATTAAAAATTCAG 57.642 32.000 13.27 10.16 39.43 3.02
125 126 7.625185 GCATGCGGCCTTTTTATTAAAAATTCA 60.625 33.333 13.27 8.43 39.43 2.57
126 127 6.686679 GCATGCGGCCTTTTTATTAAAAATTC 59.313 34.615 13.27 8.84 39.43 2.17
127 128 6.150140 TGCATGCGGCCTTTTTATTAAAAATT 59.850 30.769 14.09 0.00 43.89 1.82
128 129 5.645497 TGCATGCGGCCTTTTTATTAAAAAT 59.355 32.000 14.09 0.00 43.89 1.82
129 130 4.997395 TGCATGCGGCCTTTTTATTAAAAA 59.003 33.333 14.09 12.48 43.89 1.94
130 131 4.569943 TGCATGCGGCCTTTTTATTAAAA 58.430 34.783 14.09 0.00 43.89 1.52
131 132 4.193826 TGCATGCGGCCTTTTTATTAAA 57.806 36.364 14.09 0.00 43.89 1.52
132 133 3.876274 TGCATGCGGCCTTTTTATTAA 57.124 38.095 14.09 0.00 43.89 1.40
133 134 3.382865 TGATGCATGCGGCCTTTTTATTA 59.617 39.130 14.09 0.00 43.89 0.98
134 135 2.168106 TGATGCATGCGGCCTTTTTATT 59.832 40.909 14.09 0.00 43.89 1.40
135 136 1.755959 TGATGCATGCGGCCTTTTTAT 59.244 42.857 14.09 0.00 43.89 1.40
136 137 1.180907 TGATGCATGCGGCCTTTTTA 58.819 45.000 14.09 0.00 43.89 1.52
137 138 0.538118 ATGATGCATGCGGCCTTTTT 59.462 45.000 14.09 0.00 43.89 1.94
138 139 0.103572 GATGATGCATGCGGCCTTTT 59.896 50.000 14.09 0.00 43.89 2.27
139 140 1.038681 TGATGATGCATGCGGCCTTT 61.039 50.000 14.09 0.00 43.89 3.11
140 141 0.826256 ATGATGATGCATGCGGCCTT 60.826 50.000 14.09 2.66 43.89 4.35
141 142 1.228459 ATGATGATGCATGCGGCCT 60.228 52.632 14.09 0.00 43.89 5.19
142 143 1.080772 CATGATGATGCATGCGGCC 60.081 57.895 14.09 5.01 43.89 6.13
143 144 0.526211 ATCATGATGATGCATGCGGC 59.474 50.000 14.09 7.96 44.08 6.53
144 145 2.262572 CATCATGATGATGCATGCGG 57.737 50.000 28.37 0.00 46.37 5.69
152 153 1.610886 CGGCCTCTGCATCATGATGAT 60.611 52.381 34.65 1.25 41.20 2.45
153 154 0.250166 CGGCCTCTGCATCATGATGA 60.250 55.000 34.65 19.93 41.20 2.92
154 155 1.235281 CCGGCCTCTGCATCATGATG 61.235 60.000 28.04 28.04 41.60 3.07
155 156 1.072678 CCGGCCTCTGCATCATGAT 59.927 57.895 1.18 1.18 40.13 2.45
156 157 2.507452 CCGGCCTCTGCATCATGA 59.493 61.111 0.00 0.00 40.13 3.07
157 158 2.593725 CCCGGCCTCTGCATCATG 60.594 66.667 0.00 0.00 40.13 3.07
158 159 3.882326 CCCCGGCCTCTGCATCAT 61.882 66.667 0.00 0.00 40.13 2.45
161 162 2.689573 TATACCCCCGGCCTCTGCAT 62.690 60.000 0.00 0.00 40.13 3.96
162 163 3.398365 TATACCCCCGGCCTCTGCA 62.398 63.158 0.00 0.00 40.13 4.41
163 164 2.525877 TATACCCCCGGCCTCTGC 60.526 66.667 0.00 0.00 0.00 4.26
164 165 2.214920 GGTATACCCCCGGCCTCTG 61.215 68.421 11.17 0.00 0.00 3.35
165 166 2.203466 GGTATACCCCCGGCCTCT 59.797 66.667 11.17 0.00 0.00 3.69
166 167 1.912264 GAGGTATACCCCCGGCCTC 60.912 68.421 18.65 6.31 38.89 4.70
167 168 2.203466 GAGGTATACCCCCGGCCT 59.797 66.667 18.65 0.00 36.42 5.19
168 169 2.926779 GGAGGTATACCCCCGGCC 60.927 72.222 18.65 8.67 36.42 6.13
169 170 1.131928 AATGGAGGTATACCCCCGGC 61.132 60.000 18.65 3.34 36.42 6.13
170 171 1.350019 GAAATGGAGGTATACCCCCGG 59.650 57.143 18.65 0.00 36.42 5.73
171 172 2.051692 TGAAATGGAGGTATACCCCCG 58.948 52.381 18.65 0.00 36.42 5.73
172 173 4.529716 TTTGAAATGGAGGTATACCCCC 57.470 45.455 18.65 17.04 36.42 5.40
196 197 5.303333 AGGGAAACACCAACGATACATTTTT 59.697 36.000 0.00 0.00 41.20 1.94
197 198 4.830600 AGGGAAACACCAACGATACATTTT 59.169 37.500 0.00 0.00 41.20 1.82
198 199 4.403734 AGGGAAACACCAACGATACATTT 58.596 39.130 0.00 0.00 41.20 2.32
199 200 4.007659 GAGGGAAACACCAACGATACATT 58.992 43.478 0.00 0.00 41.20 2.71
200 201 3.263425 AGAGGGAAACACCAACGATACAT 59.737 43.478 0.00 0.00 41.20 2.29
201 202 2.635915 AGAGGGAAACACCAACGATACA 59.364 45.455 0.00 0.00 41.20 2.29
202 203 3.259902 GAGAGGGAAACACCAACGATAC 58.740 50.000 0.00 0.00 41.20 2.24
203 204 2.235402 GGAGAGGGAAACACCAACGATA 59.765 50.000 0.00 0.00 41.20 2.92
204 205 1.003233 GGAGAGGGAAACACCAACGAT 59.997 52.381 0.00 0.00 41.20 3.73
205 206 0.395312 GGAGAGGGAAACACCAACGA 59.605 55.000 0.00 0.00 41.20 3.85
206 207 0.107831 TGGAGAGGGAAACACCAACG 59.892 55.000 0.00 0.00 41.20 4.10
207 208 2.162681 CATGGAGAGGGAAACACCAAC 58.837 52.381 0.00 0.00 41.20 3.77
208 209 2.040278 CTCATGGAGAGGGAAACACCAA 59.960 50.000 0.00 0.00 40.84 3.67
209 210 1.630369 CTCATGGAGAGGGAAACACCA 59.370 52.381 0.00 0.00 40.84 4.17
210 211 2.409948 CTCATGGAGAGGGAAACACC 57.590 55.000 0.00 0.00 40.84 4.16
220 221 1.271543 CCTGGTTGCAACTCATGGAGA 60.272 52.381 27.64 2.19 33.32 3.71
221 222 1.171308 CCTGGTTGCAACTCATGGAG 58.829 55.000 27.64 13.75 35.52 3.86
222 223 0.251297 CCCTGGTTGCAACTCATGGA 60.251 55.000 27.64 5.81 0.00 3.41
223 224 1.252904 CCCCTGGTTGCAACTCATGG 61.253 60.000 27.64 24.95 0.00 3.66
224 225 1.252904 CCCCCTGGTTGCAACTCATG 61.253 60.000 27.64 18.96 0.00 3.07
225 226 1.077265 CCCCCTGGTTGCAACTCAT 59.923 57.895 27.64 0.00 0.00 2.90
226 227 1.063070 TACCCCCTGGTTGCAACTCA 61.063 55.000 27.64 21.40 44.75 3.41
227 228 0.331616 ATACCCCCTGGTTGCAACTC 59.668 55.000 27.64 18.23 44.75 3.01
228 229 0.783850 AATACCCCCTGGTTGCAACT 59.216 50.000 27.64 9.82 44.75 3.16
229 230 1.639722 AAATACCCCCTGGTTGCAAC 58.360 50.000 21.59 21.59 44.75 4.17
230 231 2.407340 AAAATACCCCCTGGTTGCAA 57.593 45.000 0.00 0.00 44.75 4.08
231 232 2.407340 AAAAATACCCCCTGGTTGCA 57.593 45.000 0.00 0.00 44.75 4.08
232 233 5.188948 AGAAATAAAAATACCCCCTGGTTGC 59.811 40.000 0.00 0.00 44.75 4.17
233 234 6.351796 CCAGAAATAAAAATACCCCCTGGTTG 60.352 42.308 0.00 0.00 44.75 3.77
234 235 5.724370 CCAGAAATAAAAATACCCCCTGGTT 59.276 40.000 0.00 0.00 44.75 3.67
236 237 5.524535 TCCAGAAATAAAAATACCCCCTGG 58.475 41.667 0.00 0.00 39.82 4.45
237 238 7.489239 TTTCCAGAAATAAAAATACCCCCTG 57.511 36.000 0.00 0.00 0.00 4.45
238 239 7.737607 ACTTTTCCAGAAATAAAAATACCCCCT 59.262 33.333 0.00 0.00 0.00 4.79
239 240 7.913789 ACTTTTCCAGAAATAAAAATACCCCC 58.086 34.615 0.00 0.00 0.00 5.40
240 241 9.214957 CAACTTTTCCAGAAATAAAAATACCCC 57.785 33.333 0.00 0.00 0.00 4.95
241 242 8.717821 GCAACTTTTCCAGAAATAAAAATACCC 58.282 33.333 0.00 0.00 0.00 3.69
242 243 9.267084 TGCAACTTTTCCAGAAATAAAAATACC 57.733 29.630 0.00 0.00 0.00 2.73
248 249 9.487790 CCTAATTGCAACTTTTCCAGAAATAAA 57.512 29.630 0.00 0.00 0.00 1.40
249 250 8.865090 TCCTAATTGCAACTTTTCCAGAAATAA 58.135 29.630 0.00 0.00 0.00 1.40
250 251 8.415950 TCCTAATTGCAACTTTTCCAGAAATA 57.584 30.769 0.00 0.00 0.00 1.40
251 252 7.301868 TCCTAATTGCAACTTTTCCAGAAAT 57.698 32.000 0.00 0.00 0.00 2.17
252 253 6.239289 CCTCCTAATTGCAACTTTTCCAGAAA 60.239 38.462 0.00 0.00 0.00 2.52
253 254 5.243730 CCTCCTAATTGCAACTTTTCCAGAA 59.756 40.000 0.00 0.00 0.00 3.02
254 255 4.766891 CCTCCTAATTGCAACTTTTCCAGA 59.233 41.667 0.00 0.00 0.00 3.86
255 256 4.766891 TCCTCCTAATTGCAACTTTTCCAG 59.233 41.667 0.00 0.00 0.00 3.86
256 257 4.735369 TCCTCCTAATTGCAACTTTTCCA 58.265 39.130 0.00 0.00 0.00 3.53
257 258 5.722021 TTCCTCCTAATTGCAACTTTTCC 57.278 39.130 0.00 0.00 0.00 3.13
258 259 9.875691 AATTATTCCTCCTAATTGCAACTTTTC 57.124 29.630 0.00 0.00 29.79 2.29
333 334 4.655762 AAGACTTTCAAGTTCCCTTTGC 57.344 40.909 0.00 0.00 39.88 3.68
399 400 6.071616 TGTCCAGTACAAAGCAAACTTCTTTT 60.072 34.615 0.00 0.00 34.05 2.27
419 421 9.703892 CATTGTTCATTTTAGGTTTATTGTCCA 57.296 29.630 0.00 0.00 0.00 4.02
461 463 0.324552 TGGGATCTTTGCATGGGTGG 60.325 55.000 0.00 0.00 0.00 4.61
469 471 3.132646 TGCATGGTTTATGGGATCTTTGC 59.867 43.478 0.00 0.00 37.26 3.68
518 520 1.682005 TGTGCTTTATGGCAGGGGC 60.682 57.895 0.00 0.00 43.25 5.80
796 798 2.867109 ACAAAGTACAGCAGAGCCAT 57.133 45.000 0.00 0.00 0.00 4.40
797 799 2.612972 GCTACAAAGTACAGCAGAGCCA 60.613 50.000 0.00 0.00 35.35 4.75
1001 1008 6.912951 TGCTCCAAGTAGTCTATATTACCC 57.087 41.667 0.00 0.00 0.00 3.69
1002 1009 8.422566 ACTTTGCTCCAAGTAGTCTATATTACC 58.577 37.037 0.00 0.00 0.00 2.85
1024 1035 1.729267 ATGGGGGTGTGCTGGACTTT 61.729 55.000 0.00 0.00 0.00 2.66
1038 1049 0.106519 GTCTTGGATGTGGGATGGGG 60.107 60.000 0.00 0.00 0.00 4.96
1041 1052 3.354948 TCTTGTCTTGGATGTGGGATG 57.645 47.619 0.00 0.00 0.00 3.51
1084 1096 1.699054 CCTCCCGATCTGGATTGGCA 61.699 60.000 6.30 0.00 40.39 4.92
1388 1406 0.459489 GAACACTGCAGCCAACCAAA 59.541 50.000 15.27 0.00 0.00 3.28
1397 1415 1.269723 TCTGGTACTCGAACACTGCAG 59.730 52.381 13.48 13.48 0.00 4.41
1746 1764 0.888285 GCATCCTGAGTAGCATGGCC 60.888 60.000 0.00 0.00 0.00 5.36
1786 1804 4.331968 ACTTAATGGAGAACGGAATTGCA 58.668 39.130 0.00 0.00 0.00 4.08
1840 1858 6.773200 GGGGGAGGAATAAATTAACAGAGAAG 59.227 42.308 0.00 0.00 0.00 2.85
1943 2162 1.207089 GACCAGACACCATTCGGATCA 59.793 52.381 0.00 0.00 35.59 2.92
1944 2163 1.802880 CGACCAGACACCATTCGGATC 60.803 57.143 0.00 0.00 35.59 3.36
1945 2164 0.175760 CGACCAGACACCATTCGGAT 59.824 55.000 0.00 0.00 35.59 4.18
1997 2216 7.201785 GGGAGTTCTTGTTCAATTCACACTTAA 60.202 37.037 0.00 0.00 0.00 1.85
2025 2244 1.399440 CAATCATCAACCAGAGCACCG 59.601 52.381 0.00 0.00 0.00 4.94
2047 2266 8.229811 CGCACACATAAGTACAATATGCAATAT 58.770 33.333 14.98 0.00 42.49 1.28
2049 2268 6.429624 CGCACACATAAGTACAATATGCAAT 58.570 36.000 14.98 2.96 34.75 3.56
2050 2269 5.729176 GCGCACACATAAGTACAATATGCAA 60.729 40.000 0.30 0.00 34.75 4.08
2052 2271 4.211389 GCGCACACATAAGTACAATATGC 58.789 43.478 0.30 8.78 34.75 3.14
2053 2272 4.445351 CGCGCACACATAAGTACAATATG 58.555 43.478 8.75 13.97 36.92 1.78
2056 2275 1.062002 GCGCGCACACATAAGTACAAT 59.938 47.619 29.10 0.00 0.00 2.71
2057 2276 0.440758 GCGCGCACACATAAGTACAA 59.559 50.000 29.10 0.00 0.00 2.41
2059 2278 0.650512 ATGCGCGCACACATAAGTAC 59.349 50.000 39.05 0.00 0.00 2.73
2060 2279 0.649993 CATGCGCGCACACATAAGTA 59.350 50.000 39.05 9.89 0.00 2.24
2061 2280 1.298157 ACATGCGCGCACACATAAGT 61.298 50.000 39.05 21.62 0.00 2.24
2062 2281 0.858548 CACATGCGCGCACACATAAG 60.859 55.000 39.05 20.97 0.00 1.73
2067 2327 2.276868 GATCACATGCGCGCACAC 60.277 61.111 39.05 19.17 0.00 3.82
2084 2344 1.236616 TTCATGTTGCAGCCTCCACG 61.237 55.000 0.00 0.00 0.00 4.94
2087 2347 1.135199 CATGTTCATGTTGCAGCCTCC 60.135 52.381 0.00 0.00 0.00 4.30
2092 2352 1.990799 CTGCCATGTTCATGTTGCAG 58.009 50.000 20.47 20.47 40.05 4.41
2093 2353 1.330234 ACTGCCATGTTCATGTTGCA 58.670 45.000 11.13 12.24 0.00 4.08
2094 2354 3.244976 GTTACTGCCATGTTCATGTTGC 58.755 45.455 11.13 8.88 0.00 4.17
2095 2355 4.502171 TGTTACTGCCATGTTCATGTTG 57.498 40.909 11.13 4.43 0.00 3.33
2096 2356 4.082081 CCATGTTACTGCCATGTTCATGTT 60.082 41.667 11.13 0.00 38.39 2.71
2097 2357 3.444742 CCATGTTACTGCCATGTTCATGT 59.555 43.478 11.13 0.00 38.39 3.21
2098 2358 3.695556 TCCATGTTACTGCCATGTTCATG 59.304 43.478 5.88 5.88 38.39 3.07
2099 2359 3.966979 TCCATGTTACTGCCATGTTCAT 58.033 40.909 0.00 0.00 38.39 2.57
2100 2360 3.431673 TCCATGTTACTGCCATGTTCA 57.568 42.857 0.00 0.00 38.39 3.18
2101 2361 3.489738 GCATCCATGTTACTGCCATGTTC 60.490 47.826 0.00 0.00 38.39 3.18
2102 2362 2.428171 GCATCCATGTTACTGCCATGTT 59.572 45.455 0.00 0.00 38.39 2.71
2103 2363 2.026641 GCATCCATGTTACTGCCATGT 58.973 47.619 0.00 0.00 38.39 3.21
2104 2364 2.787601 GCATCCATGTTACTGCCATG 57.212 50.000 0.00 0.00 39.50 3.66
2108 2368 3.189568 TGGGCATCCATGTTACTGC 57.810 52.632 0.00 0.00 38.32 4.40
2143 2414 1.071605 CACCGACTTGCTTAGCTGTC 58.928 55.000 16.33 16.33 32.77 3.51
2148 2419 1.203523 AGAGCTCACCGACTTGCTTAG 59.796 52.381 17.77 0.00 35.76 2.18
2155 2426 0.321387 TGTACGAGAGCTCACCGACT 60.321 55.000 27.52 13.65 0.00 4.18
2156 2427 0.733729 ATGTACGAGAGCTCACCGAC 59.266 55.000 27.52 21.12 0.00 4.79
2157 2428 1.460504 AATGTACGAGAGCTCACCGA 58.539 50.000 27.52 11.63 0.00 4.69
2158 2429 2.279582 AAATGTACGAGAGCTCACCG 57.720 50.000 17.77 20.14 0.00 4.94
2159 2430 2.094417 GCAAAATGTACGAGAGCTCACC 59.906 50.000 17.77 6.27 0.00 4.02
2160 2431 2.094417 GGCAAAATGTACGAGAGCTCAC 59.906 50.000 17.77 9.07 0.00 3.51
2161 2432 2.028112 AGGCAAAATGTACGAGAGCTCA 60.028 45.455 17.77 0.00 0.00 4.26
2162 2433 2.622436 AGGCAAAATGTACGAGAGCTC 58.378 47.619 5.27 5.27 0.00 4.09
2242 2518 7.961325 AAAGCAAAAGAGAGAAAGAGTAGAG 57.039 36.000 0.00 0.00 0.00 2.43
2243 2519 8.616076 CAAAAAGCAAAAGAGAGAAAGAGTAGA 58.384 33.333 0.00 0.00 0.00 2.59
2311 2587 7.244886 TGGTCTACATTGAAATTCAGAGAGA 57.755 36.000 0.00 0.00 0.00 3.10
2493 2804 4.730949 AACTAGTAGCCGTGAAATGCTA 57.269 40.909 0.00 0.00 39.00 3.49
2519 2830 1.014804 AGAGATCCACCCTCTCCTGT 58.985 55.000 0.00 0.00 40.03 4.00
2568 2886 4.115287 GCGCGTTTTAGTGCACTG 57.885 55.556 29.57 13.13 46.02 3.66
2661 2980 1.226262 GGAATGTACCACGGGCCAT 59.774 57.895 4.39 0.00 0.00 4.40
2697 3017 3.692593 TCTACGCAGCATAGTCTGTTGTA 59.307 43.478 0.00 0.00 38.27 2.41
2744 3064 1.112916 CACCACCAACTTTGACCCCC 61.113 60.000 0.00 0.00 0.00 5.40
2792 3115 5.453567 ACAAACTAATCCTTTGCCAGTTC 57.546 39.130 0.00 0.00 32.71 3.01
2796 3119 4.280677 CCTCAACAAACTAATCCTTTGCCA 59.719 41.667 0.00 0.00 32.71 4.92
2797 3120 4.809673 CCTCAACAAACTAATCCTTTGCC 58.190 43.478 0.00 0.00 32.71 4.52
2820 3143 5.068460 TGGTAAAATTTGAAGGCCATATCGG 59.932 40.000 5.01 0.00 38.11 4.18
2821 3144 6.142818 TGGTAAAATTTGAAGGCCATATCG 57.857 37.500 5.01 0.00 0.00 2.92
2822 3145 8.860088 AGTATGGTAAAATTTGAAGGCCATATC 58.140 33.333 5.01 0.00 38.98 1.63
2823 3146 8.782137 AGTATGGTAAAATTTGAAGGCCATAT 57.218 30.769 5.01 0.00 38.98 1.78
2824 3147 8.602472 AAGTATGGTAAAATTTGAAGGCCATA 57.398 30.769 5.01 11.83 36.70 2.74
2825 3148 7.494922 AAGTATGGTAAAATTTGAAGGCCAT 57.505 32.000 5.01 0.00 38.58 4.40
2826 3149 6.926630 AAGTATGGTAAAATTTGAAGGCCA 57.073 33.333 5.01 0.00 0.00 5.36
2827 3150 9.713713 TTTTAAGTATGGTAAAATTTGAAGGCC 57.286 29.630 0.00 0.00 0.00 5.19
2837 3160 9.910267 GGACCCTAGATTTTAAGTATGGTAAAA 57.090 33.333 0.00 0.00 35.50 1.52
2838 3161 8.496916 GGGACCCTAGATTTTAAGTATGGTAAA 58.503 37.037 2.09 0.00 0.00 2.01
2839 3162 7.202029 CGGGACCCTAGATTTTAAGTATGGTAA 60.202 40.741 9.41 0.00 0.00 2.85
2840 3163 6.268387 CGGGACCCTAGATTTTAAGTATGGTA 59.732 42.308 9.41 0.00 0.00 3.25
2841 3164 5.071384 CGGGACCCTAGATTTTAAGTATGGT 59.929 44.000 9.41 0.00 0.00 3.55
2842 3165 5.306160 TCGGGACCCTAGATTTTAAGTATGG 59.694 44.000 9.41 0.00 0.00 2.74
2843 3166 6.415206 TCGGGACCCTAGATTTTAAGTATG 57.585 41.667 9.41 0.00 0.00 2.39
2844 3167 8.591940 GTTATCGGGACCCTAGATTTTAAGTAT 58.408 37.037 9.41 0.00 0.00 2.12
2845 3168 7.786464 AGTTATCGGGACCCTAGATTTTAAGTA 59.214 37.037 9.41 0.00 0.00 2.24
2846 3169 6.614496 AGTTATCGGGACCCTAGATTTTAAGT 59.386 38.462 9.41 0.00 0.00 2.24
2847 3170 6.929606 CAGTTATCGGGACCCTAGATTTTAAG 59.070 42.308 9.41 0.00 0.00 1.85
2848 3171 6.687139 GCAGTTATCGGGACCCTAGATTTTAA 60.687 42.308 9.41 0.00 0.00 1.52
2849 3172 5.221581 GCAGTTATCGGGACCCTAGATTTTA 60.222 44.000 9.41 0.00 0.00 1.52
2850 3173 4.444449 GCAGTTATCGGGACCCTAGATTTT 60.444 45.833 9.41 0.00 0.00 1.82
2851 3174 3.071167 GCAGTTATCGGGACCCTAGATTT 59.929 47.826 9.41 0.00 0.00 2.17
2852 3175 2.633481 GCAGTTATCGGGACCCTAGATT 59.367 50.000 9.41 0.00 0.00 2.40
2853 3176 2.249139 GCAGTTATCGGGACCCTAGAT 58.751 52.381 9.41 7.54 0.00 1.98
2854 3177 1.700955 GCAGTTATCGGGACCCTAGA 58.299 55.000 9.41 0.00 0.00 2.43
2855 3178 0.680061 GGCAGTTATCGGGACCCTAG 59.320 60.000 9.41 0.00 0.00 3.02
2856 3179 0.031917 TGGCAGTTATCGGGACCCTA 60.032 55.000 9.41 0.00 0.00 3.53
2857 3180 1.306654 TGGCAGTTATCGGGACCCT 60.307 57.895 9.41 0.00 0.00 4.34
2858 3181 1.153229 GTGGCAGTTATCGGGACCC 60.153 63.158 0.00 0.00 0.00 4.46
2859 3182 0.743345 GTGTGGCAGTTATCGGGACC 60.743 60.000 0.00 0.00 0.00 4.46
2860 3183 1.082117 CGTGTGGCAGTTATCGGGAC 61.082 60.000 0.00 0.00 0.00 4.46
2861 3184 1.216977 CGTGTGGCAGTTATCGGGA 59.783 57.895 0.00 0.00 0.00 5.14
2862 3185 1.079405 ACGTGTGGCAGTTATCGGG 60.079 57.895 0.00 0.00 0.00 5.14
2863 3186 0.669318 ACACGTGTGGCAGTTATCGG 60.669 55.000 22.71 0.00 34.19 4.18
2864 3187 1.985334 TACACGTGTGGCAGTTATCG 58.015 50.000 30.83 0.00 34.19 2.92
2865 3188 3.682858 ACATTACACGTGTGGCAGTTATC 59.317 43.478 30.83 0.00 34.19 1.75
2866 3189 3.670625 ACATTACACGTGTGGCAGTTAT 58.329 40.909 30.83 9.49 34.19 1.89
2867 3190 3.114668 ACATTACACGTGTGGCAGTTA 57.885 42.857 30.83 6.18 34.19 2.24
2868 3191 1.961793 ACATTACACGTGTGGCAGTT 58.038 45.000 30.83 7.45 34.19 3.16
2869 3192 2.823924 TACATTACACGTGTGGCAGT 57.176 45.000 30.83 22.92 34.19 4.40
2870 3193 2.281498 CGATACATTACACGTGTGGCAG 59.719 50.000 30.83 18.80 34.19 4.85
2871 3194 2.263945 CGATACATTACACGTGTGGCA 58.736 47.619 30.83 14.92 34.19 4.92
2872 3195 1.591158 CCGATACATTACACGTGTGGC 59.409 52.381 30.83 10.56 34.19 5.01
2873 3196 2.198406 CCCGATACATTACACGTGTGG 58.802 52.381 30.83 20.90 34.19 4.17
2874 3197 2.601314 CACCCGATACATTACACGTGTG 59.399 50.000 30.83 16.82 0.00 3.82
2875 3198 2.492881 TCACCCGATACATTACACGTGT 59.507 45.455 26.52 26.52 0.00 4.49
2876 3199 3.153676 TCACCCGATACATTACACGTG 57.846 47.619 15.48 15.48 0.00 4.49
2877 3200 4.116961 CAATCACCCGATACATTACACGT 58.883 43.478 0.00 0.00 0.00 4.49
2878 3201 4.026062 CACAATCACCCGATACATTACACG 60.026 45.833 0.00 0.00 0.00 4.49
2879 3202 4.260620 GCACAATCACCCGATACATTACAC 60.261 45.833 0.00 0.00 0.00 2.90
2880 3203 3.874543 GCACAATCACCCGATACATTACA 59.125 43.478 0.00 0.00 0.00 2.41
2881 3204 4.024893 CAGCACAATCACCCGATACATTAC 60.025 45.833 0.00 0.00 0.00 1.89
2882 3205 4.126437 CAGCACAATCACCCGATACATTA 58.874 43.478 0.00 0.00 0.00 1.90
2883 3206 2.945008 CAGCACAATCACCCGATACATT 59.055 45.455 0.00 0.00 0.00 2.71
2884 3207 2.564771 CAGCACAATCACCCGATACAT 58.435 47.619 0.00 0.00 0.00 2.29
2885 3208 2.011548 GCAGCACAATCACCCGATACA 61.012 52.381 0.00 0.00 0.00 2.29
2886 3209 0.657840 GCAGCACAATCACCCGATAC 59.342 55.000 0.00 0.00 0.00 2.24
2887 3210 0.251634 TGCAGCACAATCACCCGATA 59.748 50.000 0.00 0.00 0.00 2.92
2888 3211 1.002257 TGCAGCACAATCACCCGAT 60.002 52.632 0.00 0.00 0.00 4.18
2889 3212 1.965930 GTGCAGCACAATCACCCGA 60.966 57.895 21.22 0.00 34.08 5.14
2890 3213 2.562912 GTGCAGCACAATCACCCG 59.437 61.111 21.22 0.00 34.08 5.28
2891 3214 2.562912 CGTGCAGCACAATCACCC 59.437 61.111 25.19 0.00 33.40 4.61
2901 3224 3.401243 GCCATACAAGGCGTGCAGC 62.401 63.158 0.00 0.00 46.12 5.25
2902 3225 2.793946 GCCATACAAGGCGTGCAG 59.206 61.111 0.00 0.00 46.12 4.41
2909 3232 1.770658 TCCTCTCCATGCCATACAAGG 59.229 52.381 0.00 0.00 38.55 3.61
2910 3233 3.209410 GTTCCTCTCCATGCCATACAAG 58.791 50.000 0.00 0.00 0.00 3.16
2911 3234 2.092429 GGTTCCTCTCCATGCCATACAA 60.092 50.000 0.00 0.00 0.00 2.41
2912 3235 1.490490 GGTTCCTCTCCATGCCATACA 59.510 52.381 0.00 0.00 0.00 2.29
2913 3236 1.202818 GGGTTCCTCTCCATGCCATAC 60.203 57.143 0.00 0.00 0.00 2.39
2914 3237 1.140312 GGGTTCCTCTCCATGCCATA 58.860 55.000 0.00 0.00 0.00 2.74
2915 3238 1.925888 GGGTTCCTCTCCATGCCAT 59.074 57.895 0.00 0.00 0.00 4.40
2916 3239 2.669133 CGGGTTCCTCTCCATGCCA 61.669 63.158 0.00 0.00 0.00 4.92
2917 3240 2.190578 CGGGTTCCTCTCCATGCC 59.809 66.667 0.00 0.00 0.00 4.40
2918 3241 2.514824 GCGGGTTCCTCTCCATGC 60.515 66.667 0.00 0.00 0.00 4.06
2919 3242 2.190578 GGCGGGTTCCTCTCCATG 59.809 66.667 0.00 0.00 0.00 3.66
2920 3243 3.090532 GGGCGGGTTCCTCTCCAT 61.091 66.667 0.00 0.00 0.00 3.41
2954 3277 4.460873 GGCTGTGGCTTTACGCGC 62.461 66.667 5.73 0.00 40.44 6.86
2955 3278 3.799755 GGGCTGTGGCTTTACGCG 61.800 66.667 3.53 3.53 40.44 6.01
2956 3279 3.799755 CGGGCTGTGGCTTTACGC 61.800 66.667 0.00 0.00 38.73 4.42
2957 3280 3.799755 GCGGGCTGTGGCTTTACG 61.800 66.667 0.00 0.00 38.73 3.18
2958 3281 2.671619 TGCGGGCTGTGGCTTTAC 60.672 61.111 0.00 0.00 38.73 2.01
2959 3282 2.671619 GTGCGGGCTGTGGCTTTA 60.672 61.111 0.00 0.00 38.73 1.85
2975 3298 3.683966 TTTGGCACACACCGGACGT 62.684 57.895 9.46 0.78 39.29 4.34
2976 3299 2.897846 TTTGGCACACACCGGACG 60.898 61.111 9.46 0.00 39.29 4.79
2977 3300 2.719354 GTTTGGCACACACCGGAC 59.281 61.111 9.46 0.00 39.29 4.79
2982 3305 4.279043 GGCGGGTTTGGCACACAC 62.279 66.667 6.08 0.21 39.29 3.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.