Multiple sequence alignment - TraesCS2B01G279500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G279500 chr2B 100.000 6300 0 0 1 6300 385576454 385570155 0.000000e+00 11635
1 TraesCS2B01G279500 chr2A 97.254 3860 90 6 913 4763 414982833 414986685 0.000000e+00 6527
2 TraesCS2B01G279500 chr2A 95.000 1040 32 5 4914 5938 414986689 414987723 0.000000e+00 1615
3 TraesCS2B01G279500 chr2A 86.931 681 69 10 1 676 414981422 414982087 0.000000e+00 747
4 TraesCS2B01G279500 chr2A 96.094 256 10 0 4879 5134 766571371 766571116 9.770000e-113 418
5 TraesCS2B01G279500 chr2A 99.180 122 0 1 4762 4882 191936275 191936396 1.060000e-52 219
6 TraesCS2B01G279500 chr2A 98.361 122 2 0 4761 4882 49310636 49310757 1.380000e-51 215
7 TraesCS2B01G279500 chr2A 97.059 102 1 2 6123 6224 414987862 414987961 3.020000e-38 171
8 TraesCS2B01G279500 chr2A 94.393 107 5 1 6038 6144 414987717 414987822 5.050000e-36 163
9 TraesCS2B01G279500 chr2D 97.342 2408 45 8 488 2882 317954588 317952187 0.000000e+00 4074
10 TraesCS2B01G279500 chr2D 96.444 1884 46 5 2881 4763 317952026 317950163 0.000000e+00 3088
11 TraesCS2B01G279500 chr2D 92.811 1085 55 7 4879 5940 317950176 317949092 0.000000e+00 1550
12 TraesCS2B01G279500 chr2D 87.674 503 30 8 1 494 317955930 317955451 1.980000e-154 556
13 TraesCS2B01G279500 chr2D 92.361 144 8 1 6042 6182 317949091 317948948 1.070000e-47 202
14 TraesCS2B01G279500 chr2D 96.296 108 4 0 5937 6044 628842935 628843042 1.800000e-40 178
15 TraesCS2B01G279500 chr2D 93.578 109 6 1 5936 6044 335687005 335687112 1.820000e-35 161
16 TraesCS2B01G279500 chr1A 97.037 135 2 2 4750 4882 510453069 510453203 6.350000e-55 226
17 TraesCS2B01G279500 chr1A 100.000 119 0 0 4764 4882 298560740 298560858 2.960000e-53 220
18 TraesCS2B01G279500 chr3B 100.000 118 0 0 4765 4882 29998181 29998298 1.060000e-52 219
19 TraesCS2B01G279500 chr5A 100.000 117 0 0 4766 4882 43260137 43260253 3.820000e-52 217
20 TraesCS2B01G279500 chr5A 90.083 121 8 4 5937 6055 709762378 709762496 3.040000e-33 154
21 TraesCS2B01G279500 chr4A 99.167 120 1 0 4763 4882 446616083 446616202 3.820000e-52 217
22 TraesCS2B01G279500 chr4A 100.000 117 0 0 4766 4882 473499506 473499622 3.820000e-52 217
23 TraesCS2B01G279500 chr4B 98.361 122 2 0 4761 4882 432574468 432574589 1.380000e-51 215
24 TraesCS2B01G279500 chr3A 100.000 108 0 0 5937 6044 657953106 657952999 3.850000e-47 200
25 TraesCS2B01G279500 chr6A 99.074 108 1 0 5937 6044 617692026 617691919 1.790000e-45 195
26 TraesCS2B01G279500 chr6A 99.074 108 1 0 5937 6044 617694310 617694203 1.790000e-45 195
27 TraesCS2B01G279500 chr7B 98.148 108 2 0 5937 6044 9008378 9008485 8.340000e-44 189
28 TraesCS2B01G279500 chr7B 96.262 107 4 0 5937 6043 452211913 452211807 6.490000e-40 176
29 TraesCS2B01G279500 chrUn 93.519 108 7 0 5937 6044 86621759 86621866 1.820000e-35 161


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G279500 chr2B 385570155 385576454 6299 True 11635.0 11635 100.0000 1 6300 1 chr2B.!!$R1 6299
1 TraesCS2B01G279500 chr2A 414981422 414987961 6539 False 1844.6 6527 94.1274 1 6224 5 chr2A.!!$F3 6223
2 TraesCS2B01G279500 chr2D 317948948 317955930 6982 True 1894.0 4074 93.3264 1 6182 5 chr2D.!!$R1 6181

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
254 255 0.602638 GACGGTGTTGCTCCATGTGA 60.603 55.0 0.0 0.0 0.00 3.58 F
370 380 0.805614 CTGTGACGATGAGGACGAGT 59.194 55.0 0.0 0.0 34.70 4.18 F
1321 2718 0.035881 CTGGCTTCCTTCAGCAGTCA 59.964 55.0 0.0 0.0 42.10 3.41 F
3038 4603 0.109723 TTGCTACCAGGACAACCACC 59.890 55.0 0.0 0.0 38.94 4.61 F
4820 6386 0.392461 GCAGACCGCCAAAGGACATA 60.392 55.0 0.0 0.0 34.73 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1311 2708 0.317160 CGGTGGTAGTGACTGCTGAA 59.683 55.000 0.00 0.0 0.00 3.02 R
1715 3115 1.340405 GCCTTCATGACCACCATCTGT 60.340 52.381 0.00 0.0 31.94 3.41 R
3243 4808 1.200020 GGTGCATTGTCGAGGGAAAAG 59.800 52.381 0.00 0.0 0.00 2.27 R
4826 6392 0.326595 TGTGTGTGTGGACTTGGTGT 59.673 50.000 0.00 0.0 0.00 4.16 R
5835 7427 0.540454 CATGGCTTGAGCTCCTGAGA 59.460 55.000 12.15 0.0 41.70 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 1.669115 GCTGGTGCGTGATGACACT 60.669 57.895 0.00 0.00 43.99 3.55
44 45 2.432456 GCGTGATGACACTGGCGA 60.432 61.111 0.00 0.00 43.99 5.54
70 71 3.050275 GTGGTGCACCGAGCTTCC 61.050 66.667 30.07 4.99 45.94 3.46
111 112 3.238108 ACAATCGACCATGTCAGAGTC 57.762 47.619 0.00 0.00 32.09 3.36
160 161 1.821136 GGCCAAGATAAAGCTGCAACT 59.179 47.619 0.00 0.00 0.00 3.16
202 203 1.718396 TCGACGACGATACTGTGAGT 58.282 50.000 5.75 0.00 43.81 3.41
203 204 1.392510 TCGACGACGATACTGTGAGTG 59.607 52.381 5.75 0.00 43.81 3.51
204 205 1.529214 CGACGACGATACTGTGAGTGG 60.529 57.143 0.00 0.00 42.66 4.00
205 206 1.467734 GACGACGATACTGTGAGTGGT 59.532 52.381 0.00 0.00 0.00 4.16
206 207 1.199327 ACGACGATACTGTGAGTGGTG 59.801 52.381 0.00 0.00 0.00 4.17
207 208 1.199327 CGACGATACTGTGAGTGGTGT 59.801 52.381 0.00 0.00 0.00 4.16
208 209 2.596452 GACGATACTGTGAGTGGTGTG 58.404 52.381 0.00 0.00 0.00 3.82
225 226 3.458163 GTGATGGGGGACGAGCGA 61.458 66.667 0.00 0.00 0.00 4.93
242 243 1.447838 GATGGTGATGCGACGGTGT 60.448 57.895 0.00 0.00 0.00 4.16
254 255 0.602638 GACGGTGTTGCTCCATGTGA 60.603 55.000 0.00 0.00 0.00 3.58
257 258 0.602638 GGTGTTGCTCCATGTGACGA 60.603 55.000 0.00 0.00 0.00 4.20
289 299 2.359107 TACACCGGCGAGTCGAGT 60.359 61.111 18.61 7.11 0.00 4.18
352 362 1.893808 CGACAACAGTGCAAGGGCT 60.894 57.895 0.00 0.00 41.91 5.19
354 364 1.076777 ACAACAGTGCAAGGGCTGT 60.077 52.632 2.03 2.03 46.61 4.40
370 380 0.805614 CTGTGACGATGAGGACGAGT 59.194 55.000 0.00 0.00 34.70 4.18
409 419 4.873129 CGACCTGCGACCGATGGG 62.873 72.222 0.00 0.00 44.57 4.00
486 1365 3.374058 CAGGAGACAGAAAACACGTTGTT 59.626 43.478 0.00 0.00 43.41 2.83
934 2326 2.308344 GCTCGCGGGAGGTAATTTC 58.692 57.895 28.26 8.27 40.80 2.17
1018 2415 5.511373 CCTTGCATGATTCGATCTAGGGTTA 60.511 44.000 0.00 0.00 0.00 2.85
1152 2549 5.978814 TCTCTACTATTTTGCAGGAGGTTC 58.021 41.667 0.00 0.00 0.00 3.62
1311 2708 4.021925 GGTGACGGCTGGCTTCCT 62.022 66.667 0.00 0.00 0.00 3.36
1321 2718 0.035881 CTGGCTTCCTTCAGCAGTCA 59.964 55.000 0.00 0.00 42.10 3.41
1363 2760 2.683933 CAGTACCCGCAGACCCCT 60.684 66.667 0.00 0.00 0.00 4.79
1715 3115 1.149101 AGAAGGAAAGGAAGGTGCCA 58.851 50.000 0.00 0.00 0.00 4.92
1812 3212 0.618968 GGTGGTGAGTGGATCCTCCT 60.619 60.000 14.23 8.80 37.46 3.69
1829 3229 2.301296 CTCCTCACTCTCCACATTGTGT 59.699 50.000 15.34 0.00 0.00 3.72
1830 3230 3.506398 TCCTCACTCTCCACATTGTGTA 58.494 45.455 15.34 0.00 0.00 2.90
1972 3372 5.046950 AGTGGTCCAGTATGTTCTCTTCTTC 60.047 44.000 0.00 0.00 0.00 2.87
2078 3478 6.832384 CCTTCTCTACCAATGTACCACTACTA 59.168 42.308 0.00 0.00 0.00 1.82
2102 3502 6.550938 AGACTTCTGGATTGATATGACACA 57.449 37.500 0.00 0.00 0.00 3.72
2325 3725 2.360852 CTGGCAGCAGTGGGAAGG 60.361 66.667 0.00 0.00 0.00 3.46
2384 3784 6.570378 GCCAGTTGCACTTAATACAACAAGAT 60.570 38.462 14.25 0.00 44.77 2.40
2514 3914 3.788227 TTGGTCATCAGCAGGTTACTT 57.212 42.857 0.00 0.00 0.00 2.24
2537 3937 2.095110 TGCAGAGGAAAATGTGAATGCG 60.095 45.455 0.00 0.00 35.23 4.73
2581 3981 1.767088 TGAGCCTAGAATGCATCAGCT 59.233 47.619 0.00 4.05 42.74 4.24
2791 4191 1.916181 CAGTCCATCCCAAAGGTACCT 59.084 52.381 9.21 9.21 0.00 3.08
2914 4479 2.656002 GGCCCCTTCTGGATTTCTAAC 58.344 52.381 0.00 0.00 35.39 2.34
2918 4483 4.662278 CCCCTTCTGGATTTCTAACAACA 58.338 43.478 0.00 0.00 35.39 3.33
3038 4603 0.109723 TTGCTACCAGGACAACCACC 59.890 55.000 0.00 0.00 38.94 4.61
3060 4625 1.067060 GTTGCAAGTTCAGAACCCCAC 59.933 52.381 9.85 0.00 0.00 4.61
3188 4753 4.119363 TCATGCTCCCCAGCCAGC 62.119 66.667 0.00 0.00 46.26 4.85
3237 4802 5.538053 TGCCTTCCACAATGATGAGTTTAAA 59.462 36.000 0.00 0.00 0.00 1.52
3243 4808 5.170748 CACAATGATGAGTTTAAAAGCCCC 58.829 41.667 0.00 0.00 0.00 5.80
3285 4850 3.056536 CAGTTCTTCTTCCAGATGGACGA 60.057 47.826 0.00 2.15 45.39 4.20
3312 4877 1.651737 TTTCTGCTGGTGTAGGCCTA 58.348 50.000 8.91 8.91 0.00 3.93
3375 4940 0.538057 CTCCTGGCAGTTTGGCTTCA 60.538 55.000 14.43 0.00 44.10 3.02
3657 5222 3.399330 TGGATCTGGAACTCGTTTCAAC 58.601 45.455 0.00 0.00 35.70 3.18
4382 5947 6.823689 AGTTTCCAGTATTTACCATGCTGTAG 59.176 38.462 0.00 0.00 31.17 2.74
4387 5952 8.582437 TCCAGTATTTACCATGCTGTAGTATAC 58.418 37.037 0.00 0.00 43.42 1.47
4618 6183 5.185828 GGCTGGGATTCATCTTAAGTTTTGT 59.814 40.000 1.63 0.00 0.00 2.83
4655 6220 3.525800 AATAACAACCTGGAGGCAAGT 57.474 42.857 0.00 0.00 39.32 3.16
4763 6329 6.643770 CAGTTTGCTGATGCTTTGTCTAATTT 59.356 34.615 0.00 0.00 45.28 1.82
4764 6330 7.170320 CAGTTTGCTGATGCTTTGTCTAATTTT 59.830 33.333 0.00 0.00 45.28 1.82
4765 6331 7.712205 AGTTTGCTGATGCTTTGTCTAATTTTT 59.288 29.630 0.00 0.00 40.48 1.94
4766 6332 8.977505 GTTTGCTGATGCTTTGTCTAATTTTTA 58.022 29.630 0.00 0.00 40.48 1.52
4767 6333 8.519492 TTGCTGATGCTTTGTCTAATTTTTAC 57.481 30.769 0.00 0.00 40.48 2.01
4768 6334 7.090173 TGCTGATGCTTTGTCTAATTTTTACC 58.910 34.615 0.00 0.00 40.48 2.85
4769 6335 6.251376 GCTGATGCTTTGTCTAATTTTTACCG 59.749 38.462 0.00 0.00 36.03 4.02
4770 6336 7.441890 TGATGCTTTGTCTAATTTTTACCGA 57.558 32.000 0.00 0.00 0.00 4.69
4771 6337 7.877003 TGATGCTTTGTCTAATTTTTACCGAA 58.123 30.769 0.00 0.00 0.00 4.30
4772 6338 8.353684 TGATGCTTTGTCTAATTTTTACCGAAA 58.646 29.630 0.00 0.00 0.00 3.46
4773 6339 9.187455 GATGCTTTGTCTAATTTTTACCGAAAA 57.813 29.630 0.00 0.00 41.20 2.29
4774 6340 8.928270 TGCTTTGTCTAATTTTTACCGAAAAA 57.072 26.923 0.00 0.00 45.99 1.94
4775 6341 9.026074 TGCTTTGTCTAATTTTTACCGAAAAAG 57.974 29.630 2.47 0.00 45.33 2.27
4776 6342 8.484799 GCTTTGTCTAATTTTTACCGAAAAAGG 58.515 33.333 0.00 0.00 45.33 3.11
4777 6343 7.933728 TTGTCTAATTTTTACCGAAAAAGGC 57.066 32.000 2.47 0.00 45.33 4.35
4778 6344 7.279750 TGTCTAATTTTTACCGAAAAAGGCT 57.720 32.000 2.47 0.00 45.33 4.58
4779 6345 7.718525 TGTCTAATTTTTACCGAAAAAGGCTT 58.281 30.769 0.00 0.00 45.33 4.35
4780 6346 8.198778 TGTCTAATTTTTACCGAAAAAGGCTTT 58.801 29.630 6.68 6.68 45.33 3.51
4781 6347 8.697067 GTCTAATTTTTACCGAAAAAGGCTTTC 58.303 33.333 13.76 0.41 45.33 2.62
4782 6348 6.519353 AATTTTTACCGAAAAAGGCTTTCG 57.481 33.333 13.76 13.37 45.33 3.46
4783 6349 2.691984 TTACCGAAAAAGGCTTTCGC 57.308 45.000 13.76 7.41 46.89 4.70
4784 6350 3.796165 TTTTACCGAAAAAGGCTTTCGCC 60.796 43.478 13.76 0.00 46.89 5.54
4785 6351 6.807607 TTTTACCGAAAAAGGCTTTCGCCC 62.808 45.833 13.76 2.28 46.89 6.13
4793 6359 3.509659 GCTTTCGCCCCGCTTTAT 58.490 55.556 0.00 0.00 0.00 1.40
4794 6360 2.697819 GCTTTCGCCCCGCTTTATA 58.302 52.632 0.00 0.00 0.00 0.98
4795 6361 0.586802 GCTTTCGCCCCGCTTTATAG 59.413 55.000 0.00 0.00 0.00 1.31
4796 6362 1.808891 GCTTTCGCCCCGCTTTATAGA 60.809 52.381 0.00 0.00 0.00 1.98
4797 6363 2.767505 CTTTCGCCCCGCTTTATAGAT 58.232 47.619 0.00 0.00 0.00 1.98
4798 6364 3.863400 GCTTTCGCCCCGCTTTATAGATA 60.863 47.826 0.00 0.00 0.00 1.98
4799 6365 4.312443 CTTTCGCCCCGCTTTATAGATAA 58.688 43.478 0.00 0.00 0.00 1.75
4800 6366 4.339872 TTCGCCCCGCTTTATAGATAAA 57.660 40.909 0.00 0.00 0.00 1.40
4810 6376 5.847670 CTTTATAGATAAAGCAGACCGCC 57.152 43.478 8.66 0.00 41.69 6.13
4811 6377 4.948341 TTATAGATAAAGCAGACCGCCA 57.052 40.909 0.00 0.00 44.04 5.69
4812 6378 3.838244 ATAGATAAAGCAGACCGCCAA 57.162 42.857 0.00 0.00 44.04 4.52
4813 6379 2.489938 AGATAAAGCAGACCGCCAAA 57.510 45.000 0.00 0.00 44.04 3.28
4814 6380 2.359900 AGATAAAGCAGACCGCCAAAG 58.640 47.619 0.00 0.00 44.04 2.77
4815 6381 1.401905 GATAAAGCAGACCGCCAAAGG 59.598 52.381 0.00 0.00 44.04 3.11
4816 6382 0.398696 TAAAGCAGACCGCCAAAGGA 59.601 50.000 0.00 0.00 44.04 3.36
4817 6383 1.172812 AAAGCAGACCGCCAAAGGAC 61.173 55.000 0.00 0.00 44.04 3.85
4818 6384 2.281484 GCAGACCGCCAAAGGACA 60.281 61.111 0.00 0.00 34.73 4.02
4819 6385 1.675641 GCAGACCGCCAAAGGACAT 60.676 57.895 0.00 0.00 34.73 3.06
4820 6386 0.392461 GCAGACCGCCAAAGGACATA 60.392 55.000 0.00 0.00 34.73 2.29
4821 6387 1.369625 CAGACCGCCAAAGGACATAC 58.630 55.000 0.00 0.00 34.73 2.39
4822 6388 0.981183 AGACCGCCAAAGGACATACA 59.019 50.000 0.00 0.00 34.73 2.29
4823 6389 1.349688 AGACCGCCAAAGGACATACAA 59.650 47.619 0.00 0.00 34.73 2.41
4824 6390 1.467342 GACCGCCAAAGGACATACAAC 59.533 52.381 0.00 0.00 34.73 3.32
4825 6391 0.808755 CCGCCAAAGGACATACAACC 59.191 55.000 0.00 0.00 0.00 3.77
4826 6392 1.529226 CGCCAAAGGACATACAACCA 58.471 50.000 0.00 0.00 0.00 3.67
4827 6393 1.199097 CGCCAAAGGACATACAACCAC 59.801 52.381 0.00 0.00 0.00 4.16
4828 6394 2.235016 GCCAAAGGACATACAACCACA 58.765 47.619 0.00 0.00 0.00 4.17
4829 6395 2.030274 GCCAAAGGACATACAACCACAC 60.030 50.000 0.00 0.00 0.00 3.82
4830 6396 2.556622 CCAAAGGACATACAACCACACC 59.443 50.000 0.00 0.00 0.00 4.16
4831 6397 3.218453 CAAAGGACATACAACCACACCA 58.782 45.455 0.00 0.00 0.00 4.17
4832 6398 3.586470 AAGGACATACAACCACACCAA 57.414 42.857 0.00 0.00 0.00 3.67
4833 6399 3.140325 AGGACATACAACCACACCAAG 57.860 47.619 0.00 0.00 0.00 3.61
4834 6400 2.441750 AGGACATACAACCACACCAAGT 59.558 45.455 0.00 0.00 0.00 3.16
4835 6401 2.812011 GGACATACAACCACACCAAGTC 59.188 50.000 0.00 0.00 0.00 3.01
4836 6402 2.812011 GACATACAACCACACCAAGTCC 59.188 50.000 0.00 0.00 0.00 3.85
4837 6403 2.173782 ACATACAACCACACCAAGTCCA 59.826 45.455 0.00 0.00 0.00 4.02
4838 6404 2.335316 TACAACCACACCAAGTCCAC 57.665 50.000 0.00 0.00 0.00 4.02
4839 6405 0.329931 ACAACCACACCAAGTCCACA 59.670 50.000 0.00 0.00 0.00 4.17
4840 6406 0.738389 CAACCACACCAAGTCCACAC 59.262 55.000 0.00 0.00 0.00 3.82
4841 6407 0.329931 AACCACACCAAGTCCACACA 59.670 50.000 0.00 0.00 0.00 3.72
4842 6408 0.393808 ACCACACCAAGTCCACACAC 60.394 55.000 0.00 0.00 0.00 3.82
4843 6409 0.393673 CCACACCAAGTCCACACACA 60.394 55.000 0.00 0.00 0.00 3.72
4844 6410 0.732571 CACACCAAGTCCACACACAC 59.267 55.000 0.00 0.00 0.00 3.82
4845 6411 0.326595 ACACCAAGTCCACACACACA 59.673 50.000 0.00 0.00 0.00 3.72
4846 6412 0.732571 CACCAAGTCCACACACACAC 59.267 55.000 0.00 0.00 0.00 3.82
4847 6413 0.326595 ACCAAGTCCACACACACACA 59.673 50.000 0.00 0.00 0.00 3.72
4848 6414 0.732571 CCAAGTCCACACACACACAC 59.267 55.000 0.00 0.00 0.00 3.82
4849 6415 0.732571 CAAGTCCACACACACACACC 59.267 55.000 0.00 0.00 0.00 4.16
4850 6416 0.393808 AAGTCCACACACACACACCC 60.394 55.000 0.00 0.00 0.00 4.61
4851 6417 1.078072 GTCCACACACACACACCCA 60.078 57.895 0.00 0.00 0.00 4.51
4852 6418 0.678366 GTCCACACACACACACCCAA 60.678 55.000 0.00 0.00 0.00 4.12
4853 6419 0.393673 TCCACACACACACACCCAAG 60.394 55.000 0.00 0.00 0.00 3.61
4854 6420 0.679640 CCACACACACACACCCAAGT 60.680 55.000 0.00 0.00 0.00 3.16
4855 6421 1.407575 CCACACACACACACCCAAGTA 60.408 52.381 0.00 0.00 0.00 2.24
4856 6422 1.668751 CACACACACACACCCAAGTAC 59.331 52.381 0.00 0.00 0.00 2.73
4857 6423 1.305201 CACACACACACCCAAGTACC 58.695 55.000 0.00 0.00 0.00 3.34
4858 6424 0.913205 ACACACACACCCAAGTACCA 59.087 50.000 0.00 0.00 0.00 3.25
4859 6425 1.305201 CACACACACCCAAGTACCAC 58.695 55.000 0.00 0.00 0.00 4.16
4860 6426 0.913205 ACACACACCCAAGTACCACA 59.087 50.000 0.00 0.00 0.00 4.17
4861 6427 1.282447 ACACACACCCAAGTACCACAA 59.718 47.619 0.00 0.00 0.00 3.33
4862 6428 1.673920 CACACACCCAAGTACCACAAC 59.326 52.381 0.00 0.00 0.00 3.32
4863 6429 1.282447 ACACACCCAAGTACCACAACA 59.718 47.619 0.00 0.00 0.00 3.33
4864 6430 2.291024 ACACACCCAAGTACCACAACAA 60.291 45.455 0.00 0.00 0.00 2.83
4865 6431 2.755655 CACACCCAAGTACCACAACAAA 59.244 45.455 0.00 0.00 0.00 2.83
4866 6432 3.020984 ACACCCAAGTACCACAACAAAG 58.979 45.455 0.00 0.00 0.00 2.77
4867 6433 3.020984 CACCCAAGTACCACAACAAAGT 58.979 45.455 0.00 0.00 0.00 2.66
4868 6434 3.066203 CACCCAAGTACCACAACAAAGTC 59.934 47.826 0.00 0.00 0.00 3.01
4869 6435 3.283751 CCCAAGTACCACAACAAAGTCA 58.716 45.455 0.00 0.00 0.00 3.41
4870 6436 3.888930 CCCAAGTACCACAACAAAGTCAT 59.111 43.478 0.00 0.00 0.00 3.06
4871 6437 5.067273 CCCAAGTACCACAACAAAGTCATA 58.933 41.667 0.00 0.00 0.00 2.15
4872 6438 5.533154 CCCAAGTACCACAACAAAGTCATAA 59.467 40.000 0.00 0.00 0.00 1.90
4873 6439 6.293955 CCCAAGTACCACAACAAAGTCATAAG 60.294 42.308 0.00 0.00 0.00 1.73
4874 6440 6.293955 CCAAGTACCACAACAAAGTCATAAGG 60.294 42.308 0.00 0.00 0.00 2.69
4875 6441 5.937111 AGTACCACAACAAAGTCATAAGGT 58.063 37.500 0.00 0.00 0.00 3.50
4876 6442 6.362248 AGTACCACAACAAAGTCATAAGGTT 58.638 36.000 0.00 0.00 0.00 3.50
4877 6443 5.767816 ACCACAACAAAGTCATAAGGTTC 57.232 39.130 0.00 0.00 0.00 3.62
4878 6444 5.445964 ACCACAACAAAGTCATAAGGTTCT 58.554 37.500 0.00 0.00 0.00 3.01
4879 6445 5.299279 ACCACAACAAAGTCATAAGGTTCTG 59.701 40.000 0.00 0.00 0.00 3.02
4880 6446 5.215160 CACAACAAAGTCATAAGGTTCTGC 58.785 41.667 0.00 0.00 0.00 4.26
4881 6447 5.009010 CACAACAAAGTCATAAGGTTCTGCT 59.991 40.000 0.00 0.00 0.00 4.24
4882 6448 5.594317 ACAACAAAGTCATAAGGTTCTGCTT 59.406 36.000 0.00 0.00 0.00 3.91
4883 6449 6.096846 ACAACAAAGTCATAAGGTTCTGCTTT 59.903 34.615 0.00 0.00 0.00 3.51
4884 6450 6.076981 ACAAAGTCATAAGGTTCTGCTTTG 57.923 37.500 11.14 11.14 43.74 2.77
4885 6451 5.594317 ACAAAGTCATAAGGTTCTGCTTTGT 59.406 36.000 12.21 12.21 45.15 2.83
4886 6452 5.948992 AAGTCATAAGGTTCTGCTTTGTC 57.051 39.130 0.00 0.00 0.00 3.18
4887 6453 5.234466 AGTCATAAGGTTCTGCTTTGTCT 57.766 39.130 0.00 0.00 0.00 3.41
4888 6454 6.360370 AGTCATAAGGTTCTGCTTTGTCTA 57.640 37.500 0.00 0.00 0.00 2.59
4889 6455 6.769512 AGTCATAAGGTTCTGCTTTGTCTAA 58.230 36.000 0.00 0.00 0.00 2.10
4890 6456 7.398024 AGTCATAAGGTTCTGCTTTGTCTAAT 58.602 34.615 0.00 0.00 0.00 1.73
4891 6457 7.885399 AGTCATAAGGTTCTGCTTTGTCTAATT 59.115 33.333 0.00 0.00 0.00 1.40
4941 6507 2.810439 TAAAGGCATTGTTGTGCACC 57.190 45.000 15.69 0.00 46.81 5.01
4953 6519 3.186909 GTTGTGCACCTTTTGTTCTTCC 58.813 45.455 15.69 0.00 0.00 3.46
4966 6532 5.607119 TTGTTCTTCCAGCGTTCTTATTC 57.393 39.130 0.00 0.00 0.00 1.75
4999 6565 7.321908 TGGTTTCAGTTTTAGGTTTTGGTTAC 58.678 34.615 0.00 0.00 0.00 2.50
5149 6715 5.403466 GTGAACAAATTGGAAAAGCAGCTAG 59.597 40.000 0.00 0.00 0.00 3.42
5214 6782 1.798813 CCCACGCTCTTTACTTGTGTC 59.201 52.381 0.00 0.00 0.00 3.67
5300 6868 9.944376 ATGTTGACAAGTATGTGAAGTTATAGT 57.056 29.630 0.00 0.00 40.74 2.12
5465 7038 4.147321 TCTTGTAAGTACTGAGGGAACGT 58.853 43.478 0.00 0.00 0.00 3.99
5598 7173 3.263425 CCAACACAGGGTAAGTGATAGGT 59.737 47.826 0.00 0.00 40.16 3.08
5639 7214 4.918810 TTTTTCCTTGAGCTGGTTTCTC 57.081 40.909 0.00 0.00 0.00 2.87
5721 7304 8.658499 TTCATCAGATGATCTTACATGTTCTG 57.342 34.615 14.11 9.39 39.39 3.02
5723 7306 5.922053 TCAGATGATCTTACATGTTCTGGG 58.078 41.667 17.23 0.00 0.00 4.45
5746 7329 7.125811 TGGGTGCTGATAGTCTAGATTTAGTTT 59.874 37.037 0.00 0.00 0.00 2.66
5748 7331 9.384764 GGTGCTGATAGTCTAGATTTAGTTTTT 57.615 33.333 0.00 0.00 0.00 1.94
5835 7427 4.589374 TCGTTTTGGGGGTCATGTTATTTT 59.411 37.500 0.00 0.00 0.00 1.82
5951 7543 3.908643 GGAAATACTCCCTCCGTTCTT 57.091 47.619 0.00 0.00 38.44 2.52
5952 7544 4.217836 GGAAATACTCCCTCCGTTCTTT 57.782 45.455 0.00 0.00 38.44 2.52
5953 7545 4.586884 GGAAATACTCCCTCCGTTCTTTT 58.413 43.478 0.00 0.00 38.44 2.27
5954 7546 5.008331 GGAAATACTCCCTCCGTTCTTTTT 58.992 41.667 0.00 0.00 38.44 1.94
5975 7567 7.724305 TTTTTATAAGACGTTTCAGACAGCT 57.276 32.000 0.00 0.00 0.00 4.24
5976 7568 6.706055 TTTATAAGACGTTTCAGACAGCTG 57.294 37.500 13.48 13.48 43.67 4.24
5987 7579 3.922910 TCAGACAGCTGAGATTGAACTG 58.077 45.455 23.35 14.46 45.88 3.16
5988 7580 3.323115 TCAGACAGCTGAGATTGAACTGT 59.677 43.478 23.35 0.00 45.88 3.55
5989 7581 4.063689 CAGACAGCTGAGATTGAACTGTT 58.936 43.478 23.35 0.00 45.17 3.16
5990 7582 4.514441 CAGACAGCTGAGATTGAACTGTTT 59.486 41.667 23.35 0.00 45.17 2.83
5991 7583 5.008415 CAGACAGCTGAGATTGAACTGTTTT 59.992 40.000 23.35 0.00 45.17 2.43
5992 7584 5.008415 AGACAGCTGAGATTGAACTGTTTTG 59.992 40.000 23.35 0.00 41.45 2.44
5993 7585 4.037208 ACAGCTGAGATTGAACTGTTTTGG 59.963 41.667 23.35 0.00 38.38 3.28
5994 7586 3.571401 AGCTGAGATTGAACTGTTTTGGG 59.429 43.478 0.00 0.00 0.00 4.12
5995 7587 3.858503 GCTGAGATTGAACTGTTTTGGGC 60.859 47.826 0.00 0.00 0.00 5.36
5996 7588 3.295093 TGAGATTGAACTGTTTTGGGCA 58.705 40.909 0.00 0.00 0.00 5.36
5997 7589 3.068024 TGAGATTGAACTGTTTTGGGCAC 59.932 43.478 0.00 0.00 0.00 5.01
5998 7590 3.299503 AGATTGAACTGTTTTGGGCACT 58.700 40.909 0.00 0.00 0.00 4.40
5999 7591 2.957491 TTGAACTGTTTTGGGCACTG 57.043 45.000 0.00 0.00 0.00 3.66
6000 7592 1.846007 TGAACTGTTTTGGGCACTGT 58.154 45.000 0.00 0.00 0.00 3.55
6001 7593 1.748493 TGAACTGTTTTGGGCACTGTC 59.252 47.619 0.00 0.00 0.00 3.51
6002 7594 2.024414 GAACTGTTTTGGGCACTGTCT 58.976 47.619 0.00 0.00 0.00 3.41
6003 7595 1.392589 ACTGTTTTGGGCACTGTCTG 58.607 50.000 0.00 0.00 0.00 3.51
6004 7596 1.064758 ACTGTTTTGGGCACTGTCTGA 60.065 47.619 0.00 0.00 0.00 3.27
6005 7597 2.023673 CTGTTTTGGGCACTGTCTGAA 58.976 47.619 0.00 0.00 0.00 3.02
6006 7598 2.426738 CTGTTTTGGGCACTGTCTGAAA 59.573 45.455 0.00 0.00 0.00 2.69
6007 7599 3.030291 TGTTTTGGGCACTGTCTGAAAT 58.970 40.909 0.00 0.00 0.00 2.17
6008 7600 3.181477 TGTTTTGGGCACTGTCTGAAATG 60.181 43.478 0.00 0.00 0.00 2.32
6009 7601 2.363306 TTGGGCACTGTCTGAAATGT 57.637 45.000 0.00 0.00 0.00 2.71
6010 7602 1.896220 TGGGCACTGTCTGAAATGTC 58.104 50.000 0.00 0.00 0.00 3.06
6011 7603 1.421268 TGGGCACTGTCTGAAATGTCT 59.579 47.619 0.00 0.00 0.00 3.41
6012 7604 2.637382 TGGGCACTGTCTGAAATGTCTA 59.363 45.455 0.00 0.00 0.00 2.59
6013 7605 3.003480 GGGCACTGTCTGAAATGTCTAC 58.997 50.000 0.00 0.00 0.00 2.59
6014 7606 3.557054 GGGCACTGTCTGAAATGTCTACA 60.557 47.826 0.00 0.00 0.00 2.74
6015 7607 4.065088 GGCACTGTCTGAAATGTCTACAA 58.935 43.478 0.00 0.00 0.00 2.41
6016 7608 4.083802 GGCACTGTCTGAAATGTCTACAAC 60.084 45.833 0.00 0.00 0.00 3.32
6017 7609 4.376413 GCACTGTCTGAAATGTCTACAACG 60.376 45.833 0.00 0.00 0.00 4.10
6018 7610 4.745125 CACTGTCTGAAATGTCTACAACGT 59.255 41.667 0.00 0.00 0.00 3.99
6019 7611 4.982916 ACTGTCTGAAATGTCTACAACGTC 59.017 41.667 0.00 0.00 0.00 4.34
6020 7612 5.196341 TGTCTGAAATGTCTACAACGTCT 57.804 39.130 0.00 0.00 0.00 4.18
6021 7613 5.597806 TGTCTGAAATGTCTACAACGTCTT 58.402 37.500 0.00 0.00 0.00 3.01
6022 7614 6.741109 TGTCTGAAATGTCTACAACGTCTTA 58.259 36.000 0.00 0.00 0.00 2.10
6023 7615 7.375834 TGTCTGAAATGTCTACAACGTCTTAT 58.624 34.615 0.00 0.00 0.00 1.73
6024 7616 8.517056 TGTCTGAAATGTCTACAACGTCTTATA 58.483 33.333 0.00 0.00 0.00 0.98
6025 7617 9.350357 GTCTGAAATGTCTACAACGTCTTATAA 57.650 33.333 0.00 0.00 0.00 0.98
6026 7618 9.917129 TCTGAAATGTCTACAACGTCTTATAAA 57.083 29.630 0.00 0.00 0.00 1.40
6031 7623 9.701098 AATGTCTACAACGTCTTATAAAAGTGA 57.299 29.630 0.00 0.00 34.13 3.41
6032 7624 9.701098 ATGTCTACAACGTCTTATAAAAGTGAA 57.299 29.630 0.00 0.00 34.13 3.18
6033 7625 8.971321 TGTCTACAACGTCTTATAAAAGTGAAC 58.029 33.333 0.00 0.00 34.13 3.18
6034 7626 8.971321 GTCTACAACGTCTTATAAAAGTGAACA 58.029 33.333 0.00 0.00 34.13 3.18
6035 7627 9.188588 TCTACAACGTCTTATAAAAGTGAACAG 57.811 33.333 0.00 0.00 34.13 3.16
6036 7628 9.188588 CTACAACGTCTTATAAAAGTGAACAGA 57.811 33.333 0.00 0.00 34.13 3.41
6037 7629 8.073355 ACAACGTCTTATAAAAGTGAACAGAG 57.927 34.615 0.00 0.00 34.13 3.35
6038 7630 7.170998 ACAACGTCTTATAAAAGTGAACAGAGG 59.829 37.037 0.00 0.00 34.13 3.69
6039 7631 6.989659 ACGTCTTATAAAAGTGAACAGAGGA 58.010 36.000 0.00 0.00 34.13 3.71
6040 7632 7.439381 ACGTCTTATAAAAGTGAACAGAGGAA 58.561 34.615 0.00 0.00 34.13 3.36
6041 7633 7.599245 ACGTCTTATAAAAGTGAACAGAGGAAG 59.401 37.037 0.00 0.00 34.13 3.46
6042 7634 7.599245 CGTCTTATAAAAGTGAACAGAGGAAGT 59.401 37.037 0.00 0.00 34.13 3.01
6043 7635 9.924650 GTCTTATAAAAGTGAACAGAGGAAGTA 57.075 33.333 0.00 0.00 34.13 2.24
6067 7659 9.855021 GTAACTTATTTGCATTTATTGGTCTGT 57.145 29.630 0.00 0.00 0.00 3.41
6076 7668 1.735926 TATTGGTCTGTGTGGGGTGA 58.264 50.000 0.00 0.00 0.00 4.02
6091 7683 0.036875 GGTGACCCTCCCTGAAGTTG 59.963 60.000 0.00 0.00 0.00 3.16
6191 7844 7.512992 AGATCTGATGATTCCCTAATCGTTTT 58.487 34.615 0.00 0.00 43.84 2.43
6216 7869 4.006780 TGTCCATCCCGATGTATTCATG 57.993 45.455 4.09 0.00 37.11 3.07
6240 7893 2.791383 TTTTGAAATGGTCACCTGCG 57.209 45.000 0.00 0.00 35.39 5.18
6241 7894 0.958091 TTTGAAATGGTCACCTGCGG 59.042 50.000 0.00 0.00 35.39 5.69
6242 7895 0.893270 TTGAAATGGTCACCTGCGGG 60.893 55.000 11.02 11.02 35.39 6.13
6243 7896 2.035626 AAATGGTCACCTGCGGGG 59.964 61.111 18.00 5.11 41.89 5.73
6244 7897 3.583882 AAATGGTCACCTGCGGGGG 62.584 63.158 18.00 13.39 40.03 5.40
6266 7919 3.900888 GGACTCCCCACCTGAACA 58.099 61.111 0.00 0.00 34.14 3.18
6267 7920 2.387952 GGACTCCCCACCTGAACAT 58.612 57.895 0.00 0.00 34.14 2.71
6268 7921 1.580059 GGACTCCCCACCTGAACATA 58.420 55.000 0.00 0.00 34.14 2.29
6269 7922 2.127708 GGACTCCCCACCTGAACATAT 58.872 52.381 0.00 0.00 34.14 1.78
6270 7923 2.509964 GGACTCCCCACCTGAACATATT 59.490 50.000 0.00 0.00 34.14 1.28
6271 7924 3.053619 GGACTCCCCACCTGAACATATTT 60.054 47.826 0.00 0.00 34.14 1.40
6272 7925 4.200092 GACTCCCCACCTGAACATATTTC 58.800 47.826 0.00 0.00 0.00 2.17
6273 7926 3.591527 ACTCCCCACCTGAACATATTTCA 59.408 43.478 0.00 0.00 0.00 2.69
6274 7927 4.044065 ACTCCCCACCTGAACATATTTCAA 59.956 41.667 3.16 0.00 0.00 2.69
6275 7928 5.004361 TCCCCACCTGAACATATTTCAAA 57.996 39.130 3.16 0.00 0.00 2.69
6276 7929 5.398236 TCCCCACCTGAACATATTTCAAAA 58.602 37.500 3.16 0.00 0.00 2.44
6277 7930 5.245075 TCCCCACCTGAACATATTTCAAAAC 59.755 40.000 3.16 0.00 0.00 2.43
6278 7931 5.160641 CCCACCTGAACATATTTCAAAACG 58.839 41.667 3.16 0.00 0.00 3.60
6279 7932 5.160641 CCACCTGAACATATTTCAAAACGG 58.839 41.667 0.00 3.59 0.00 4.44
6280 7933 5.278758 CCACCTGAACATATTTCAAAACGGT 60.279 40.000 0.00 4.02 0.00 4.83
6281 7934 6.212955 CACCTGAACATATTTCAAAACGGTT 58.787 36.000 0.00 0.00 0.00 4.44
6282 7935 6.699642 CACCTGAACATATTTCAAAACGGTTT 59.300 34.615 0.00 0.00 0.00 3.27
6283 7936 7.863375 CACCTGAACATATTTCAAAACGGTTTA 59.137 33.333 6.53 0.00 0.00 2.01
6284 7937 8.079809 ACCTGAACATATTTCAAAACGGTTTAG 58.920 33.333 6.53 0.00 0.00 1.85
6285 7938 8.293867 CCTGAACATATTTCAAAACGGTTTAGA 58.706 33.333 6.53 0.00 0.00 2.10
6286 7939 9.329913 CTGAACATATTTCAAAACGGTTTAGAG 57.670 33.333 6.53 0.82 0.00 2.43
6287 7940 8.842280 TGAACATATTTCAAAACGGTTTAGAGT 58.158 29.630 6.53 0.00 0.00 3.24
6288 7941 9.673454 GAACATATTTCAAAACGGTTTAGAGTT 57.327 29.630 6.53 0.00 0.00 3.01
6294 7947 7.846644 TTCAAAACGGTTTAGAGTTTACAGA 57.153 32.000 6.53 0.00 39.36 3.41
6295 7948 7.473027 TCAAAACGGTTTAGAGTTTACAGAG 57.527 36.000 6.53 0.00 39.36 3.35
6296 7949 6.480981 TCAAAACGGTTTAGAGTTTACAGAGG 59.519 38.462 6.53 0.00 39.36 3.69
6297 7950 5.541953 AACGGTTTAGAGTTTACAGAGGT 57.458 39.130 0.00 0.00 0.00 3.85
6298 7951 5.131594 ACGGTTTAGAGTTTACAGAGGTC 57.868 43.478 0.00 0.00 0.00 3.85
6299 7952 4.586001 ACGGTTTAGAGTTTACAGAGGTCA 59.414 41.667 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 4.758251 CCACAGGTCGCATCGCCA 62.758 66.667 0.00 0.00 0.00 5.69
44 45 2.669569 GTGCACCACAGGTCGCAT 60.670 61.111 5.22 0.00 40.01 4.73
70 71 0.179062 GCTATGCTCACAGACAGGGG 60.179 60.000 0.00 0.00 0.00 4.79
160 161 2.588027 TTGTAGCAGTGTCGTTGTCA 57.412 45.000 0.00 0.00 0.00 3.58
202 203 2.889606 CGTCCCCCATCACACACCA 61.890 63.158 0.00 0.00 0.00 4.17
203 204 2.046314 CGTCCCCCATCACACACC 60.046 66.667 0.00 0.00 0.00 4.16
204 205 1.079127 CTCGTCCCCCATCACACAC 60.079 63.158 0.00 0.00 0.00 3.82
205 206 2.954684 GCTCGTCCCCCATCACACA 61.955 63.158 0.00 0.00 0.00 3.72
206 207 2.125106 GCTCGTCCCCCATCACAC 60.125 66.667 0.00 0.00 0.00 3.82
207 208 3.770040 CGCTCGTCCCCCATCACA 61.770 66.667 0.00 0.00 0.00 3.58
208 209 2.797278 ATCGCTCGTCCCCCATCAC 61.797 63.158 0.00 0.00 0.00 3.06
225 226 1.003839 AACACCGTCGCATCACCAT 60.004 52.632 0.00 0.00 0.00 3.55
242 243 0.321564 CCCTTCGTCACATGGAGCAA 60.322 55.000 0.00 0.00 0.00 3.91
257 258 4.493747 GTAGCTCGTCGCGCCCTT 62.494 66.667 0.00 0.00 45.59 3.95
279 289 1.630244 ATTGCAGCAACTCGACTCGC 61.630 55.000 10.85 0.00 0.00 5.03
289 299 3.736100 CGTCGCCCATTGCAGCAA 61.736 61.111 11.07 11.07 41.33 3.91
310 320 2.814805 AGGTGGCTCATTGTAGCATT 57.185 45.000 9.34 0.00 44.64 3.56
352 362 1.068541 CAACTCGTCCTCATCGTCACA 60.069 52.381 0.00 0.00 0.00 3.58
354 364 0.109272 GCAACTCGTCCTCATCGTCA 60.109 55.000 0.00 0.00 0.00 4.35
486 1365 2.303175 GTAGCCACCCTTCACAAACAA 58.697 47.619 0.00 0.00 0.00 2.83
739 1622 0.819666 GCGGATGGATTGGGGAGAAC 60.820 60.000 0.00 0.00 0.00 3.01
1018 2415 2.046314 CCCATTCCGCGAACCACT 60.046 61.111 8.23 0.00 0.00 4.00
1152 2549 1.882352 CGGAGTCCAAACCCTTGAAGG 60.882 57.143 10.49 3.69 34.14 3.46
1192 2589 0.629058 GTGGATTAAAGCCCCCTCCA 59.371 55.000 0.00 0.00 33.70 3.86
1311 2708 0.317160 CGGTGGTAGTGACTGCTGAA 59.683 55.000 0.00 0.00 0.00 3.02
1358 2755 3.965258 TGGACGCATTGCAGGGGT 61.965 61.111 9.69 9.42 0.00 4.95
1715 3115 1.340405 GCCTTCATGACCACCATCTGT 60.340 52.381 0.00 0.00 31.94 3.41
1768 3168 6.267242 CCATATCCATATCCGAGTCATCAGAT 59.733 42.308 0.00 0.00 0.00 2.90
1812 3212 5.359860 ACGATATACACAATGTGGAGAGTGA 59.640 40.000 18.37 0.00 37.94 3.41
1864 3264 4.275810 AGATGTGCCAAGCTGAATGTTAT 58.724 39.130 0.00 0.00 0.00 1.89
1972 3372 9.029243 GTTGATGATCATAGAACTGTACAGAAG 57.971 37.037 29.30 11.29 0.00 2.85
2078 3478 6.950842 TGTGTCATATCAATCCAGAAGTCTT 58.049 36.000 0.00 0.00 0.00 3.01
2325 3725 5.438761 ACAGACACATTTCCAGTTTTAGC 57.561 39.130 0.00 0.00 0.00 3.09
2369 3769 9.330063 TCTGAGGCATAATCTTGTTGTATTAAG 57.670 33.333 0.00 0.00 0.00 1.85
2384 3784 3.194329 CCTCGCTATCATCTGAGGCATAA 59.806 47.826 0.00 0.00 41.36 1.90
2442 3842 2.548904 GCTCATTATCTTCAGGCAGCAG 59.451 50.000 0.00 0.00 0.00 4.24
2514 3914 4.201940 CGCATTCACATTTTCCTCTGCATA 60.202 41.667 0.00 0.00 0.00 3.14
2581 3981 6.575244 TTATTGGGCTTCTCTCATCCTTAA 57.425 37.500 0.00 0.00 0.00 1.85
2714 4114 2.228059 GCTATAGGTGACTGGCTACGA 58.772 52.381 1.04 0.00 43.88 3.43
2853 4253 4.271687 GCATGTAAAACGAATTAGAGGCG 58.728 43.478 0.00 0.00 28.55 5.52
2957 4522 1.813513 CTTAGCAAGTGGTGACCTGG 58.186 55.000 2.11 0.00 0.00 4.45
3038 4603 1.338020 GGGGTTCTGAACTTGCAACTG 59.662 52.381 19.05 0.00 0.00 3.16
3060 4625 1.730064 GCATTTGGCTGAAACTGCATG 59.270 47.619 0.00 0.00 40.25 4.06
3188 4753 2.075338 GCTGCTGTTGAGAAGGAAGAG 58.925 52.381 0.00 0.00 0.00 2.85
3237 4802 1.379146 GTCGAGGGAAAAGGGGCTT 59.621 57.895 0.00 0.00 0.00 4.35
3243 4808 1.200020 GGTGCATTGTCGAGGGAAAAG 59.800 52.381 0.00 0.00 0.00 2.27
3291 4856 1.355720 AGGCCTACACCAGCAGAAAAT 59.644 47.619 1.29 0.00 0.00 1.82
3657 5222 3.611517 CACAACTTCTGCAGAACTTTCG 58.388 45.455 25.16 16.90 0.00 3.46
3870 5435 2.281484 GCAACAAGCCCGAGTCCA 60.281 61.111 0.00 0.00 37.23 4.02
4382 5947 6.278363 ACAACCATGTAAGATGACCGTATAC 58.722 40.000 0.00 0.00 38.24 1.47
4387 5952 6.489127 TTAAACAACCATGTAAGATGACCG 57.511 37.500 0.00 0.00 39.40 4.79
4522 6087 6.007703 ACCCAATTACCAAAGAATTCTCGAA 58.992 36.000 8.78 0.00 0.00 3.71
4576 6141 1.202348 GCCTCCCAAACATAACAGTGC 59.798 52.381 0.00 0.00 0.00 4.40
4670 6235 8.594881 TTGCAACAATTCAATATAAACGGTTT 57.405 26.923 11.33 11.33 0.00 3.27
4680 6245 8.429493 TGTCAAAACATTGCAACAATTCAATA 57.571 26.923 0.00 0.00 32.22 1.90
4693 6258 6.332630 ACTGTTCCTTCTTGTCAAAACATTG 58.667 36.000 1.31 0.00 34.73 2.82
4777 6343 2.234300 TCTATAAAGCGGGGCGAAAG 57.766 50.000 0.00 0.00 0.00 2.62
4778 6344 2.922740 ATCTATAAAGCGGGGCGAAA 57.077 45.000 0.00 0.00 0.00 3.46
4779 6345 4.312443 CTTTATCTATAAAGCGGGGCGAA 58.688 43.478 9.01 0.00 41.69 4.70
4780 6346 3.921677 CTTTATCTATAAAGCGGGGCGA 58.078 45.455 9.01 0.00 41.69 5.54
4789 6355 5.284861 TGGCGGTCTGCTTTATCTATAAA 57.715 39.130 3.10 0.00 45.43 1.40
4790 6356 4.948341 TGGCGGTCTGCTTTATCTATAA 57.052 40.909 3.10 0.00 45.43 0.98
4791 6357 4.948341 TTGGCGGTCTGCTTTATCTATA 57.052 40.909 3.10 0.00 45.43 1.31
4792 6358 3.838244 TTGGCGGTCTGCTTTATCTAT 57.162 42.857 3.10 0.00 45.43 1.98
4793 6359 3.531538 CTTTGGCGGTCTGCTTTATCTA 58.468 45.455 3.10 0.00 45.43 1.98
4794 6360 2.359900 CTTTGGCGGTCTGCTTTATCT 58.640 47.619 3.10 0.00 45.43 1.98
4795 6361 1.401905 CCTTTGGCGGTCTGCTTTATC 59.598 52.381 3.10 0.00 45.43 1.75
4796 6362 1.004277 TCCTTTGGCGGTCTGCTTTAT 59.996 47.619 3.10 0.00 45.43 1.40
4797 6363 0.398696 TCCTTTGGCGGTCTGCTTTA 59.601 50.000 3.10 0.00 45.43 1.85
4798 6364 1.150536 TCCTTTGGCGGTCTGCTTT 59.849 52.632 3.10 0.00 45.43 3.51
4799 6365 1.600916 GTCCTTTGGCGGTCTGCTT 60.601 57.895 3.10 0.00 45.43 3.91
4800 6366 2.032681 GTCCTTTGGCGGTCTGCT 59.967 61.111 3.10 0.00 45.43 4.24
4801 6367 0.392461 TATGTCCTTTGGCGGTCTGC 60.392 55.000 0.00 0.00 45.38 4.26
4802 6368 1.338674 TGTATGTCCTTTGGCGGTCTG 60.339 52.381 0.00 0.00 0.00 3.51
4803 6369 0.981183 TGTATGTCCTTTGGCGGTCT 59.019 50.000 0.00 0.00 0.00 3.85
4804 6370 1.467342 GTTGTATGTCCTTTGGCGGTC 59.533 52.381 0.00 0.00 0.00 4.79
4805 6371 1.530323 GTTGTATGTCCTTTGGCGGT 58.470 50.000 0.00 0.00 0.00 5.68
4806 6372 0.808755 GGTTGTATGTCCTTTGGCGG 59.191 55.000 0.00 0.00 0.00 6.13
4807 6373 1.199097 GTGGTTGTATGTCCTTTGGCG 59.801 52.381 0.00 0.00 0.00 5.69
4808 6374 2.030274 GTGTGGTTGTATGTCCTTTGGC 60.030 50.000 0.00 0.00 0.00 4.52
4809 6375 2.556622 GGTGTGGTTGTATGTCCTTTGG 59.443 50.000 0.00 0.00 0.00 3.28
4810 6376 3.218453 TGGTGTGGTTGTATGTCCTTTG 58.782 45.455 0.00 0.00 0.00 2.77
4811 6377 3.586470 TGGTGTGGTTGTATGTCCTTT 57.414 42.857 0.00 0.00 0.00 3.11
4812 6378 3.117663 ACTTGGTGTGGTTGTATGTCCTT 60.118 43.478 0.00 0.00 0.00 3.36
4813 6379 2.441750 ACTTGGTGTGGTTGTATGTCCT 59.558 45.455 0.00 0.00 0.00 3.85
4814 6380 2.812011 GACTTGGTGTGGTTGTATGTCC 59.188 50.000 0.00 0.00 0.00 4.02
4815 6381 2.812011 GGACTTGGTGTGGTTGTATGTC 59.188 50.000 0.00 0.00 0.00 3.06
4816 6382 2.173782 TGGACTTGGTGTGGTTGTATGT 59.826 45.455 0.00 0.00 0.00 2.29
4817 6383 2.552315 GTGGACTTGGTGTGGTTGTATG 59.448 50.000 0.00 0.00 0.00 2.39
4818 6384 2.173782 TGTGGACTTGGTGTGGTTGTAT 59.826 45.455 0.00 0.00 0.00 2.29
4819 6385 1.560146 TGTGGACTTGGTGTGGTTGTA 59.440 47.619 0.00 0.00 0.00 2.41
4820 6386 0.329931 TGTGGACTTGGTGTGGTTGT 59.670 50.000 0.00 0.00 0.00 3.32
4821 6387 0.738389 GTGTGGACTTGGTGTGGTTG 59.262 55.000 0.00 0.00 0.00 3.77
4822 6388 0.329931 TGTGTGGACTTGGTGTGGTT 59.670 50.000 0.00 0.00 0.00 3.67
4823 6389 0.393808 GTGTGTGGACTTGGTGTGGT 60.394 55.000 0.00 0.00 0.00 4.16
4824 6390 0.393673 TGTGTGTGGACTTGGTGTGG 60.394 55.000 0.00 0.00 0.00 4.17
4825 6391 0.732571 GTGTGTGTGGACTTGGTGTG 59.267 55.000 0.00 0.00 0.00 3.82
4826 6392 0.326595 TGTGTGTGTGGACTTGGTGT 59.673 50.000 0.00 0.00 0.00 4.16
4827 6393 0.732571 GTGTGTGTGTGGACTTGGTG 59.267 55.000 0.00 0.00 0.00 4.17
4828 6394 0.326595 TGTGTGTGTGTGGACTTGGT 59.673 50.000 0.00 0.00 0.00 3.67
4829 6395 0.732571 GTGTGTGTGTGTGGACTTGG 59.267 55.000 0.00 0.00 0.00 3.61
4830 6396 0.732571 GGTGTGTGTGTGTGGACTTG 59.267 55.000 0.00 0.00 0.00 3.16
4831 6397 0.393808 GGGTGTGTGTGTGTGGACTT 60.394 55.000 0.00 0.00 0.00 3.01
4832 6398 1.223487 GGGTGTGTGTGTGTGGACT 59.777 57.895 0.00 0.00 0.00 3.85
4833 6399 0.678366 TTGGGTGTGTGTGTGTGGAC 60.678 55.000 0.00 0.00 0.00 4.02
4834 6400 0.393673 CTTGGGTGTGTGTGTGTGGA 60.394 55.000 0.00 0.00 0.00 4.02
4835 6401 0.679640 ACTTGGGTGTGTGTGTGTGG 60.680 55.000 0.00 0.00 0.00 4.17
4836 6402 1.668751 GTACTTGGGTGTGTGTGTGTG 59.331 52.381 0.00 0.00 0.00 3.82
4837 6403 1.407712 GGTACTTGGGTGTGTGTGTGT 60.408 52.381 0.00 0.00 0.00 3.72
4838 6404 1.305201 GGTACTTGGGTGTGTGTGTG 58.695 55.000 0.00 0.00 0.00 3.82
4839 6405 0.913205 TGGTACTTGGGTGTGTGTGT 59.087 50.000 0.00 0.00 0.00 3.72
4840 6406 1.305201 GTGGTACTTGGGTGTGTGTG 58.695 55.000 0.00 0.00 0.00 3.82
4841 6407 0.913205 TGTGGTACTTGGGTGTGTGT 59.087 50.000 0.00 0.00 0.00 3.72
4842 6408 1.673920 GTTGTGGTACTTGGGTGTGTG 59.326 52.381 0.00 0.00 0.00 3.82
4843 6409 1.282447 TGTTGTGGTACTTGGGTGTGT 59.718 47.619 0.00 0.00 0.00 3.72
4844 6410 2.045561 TGTTGTGGTACTTGGGTGTG 57.954 50.000 0.00 0.00 0.00 3.82
4845 6411 2.810870 TTGTTGTGGTACTTGGGTGT 57.189 45.000 0.00 0.00 0.00 4.16
4846 6412 3.020984 ACTTTGTTGTGGTACTTGGGTG 58.979 45.455 0.00 0.00 0.00 4.61
4847 6413 3.284617 GACTTTGTTGTGGTACTTGGGT 58.715 45.455 0.00 0.00 0.00 4.51
4848 6414 3.283751 TGACTTTGTTGTGGTACTTGGG 58.716 45.455 0.00 0.00 0.00 4.12
4849 6415 6.293955 CCTTATGACTTTGTTGTGGTACTTGG 60.294 42.308 0.00 0.00 0.00 3.61
4850 6416 6.262273 ACCTTATGACTTTGTTGTGGTACTTG 59.738 38.462 0.00 0.00 0.00 3.16
4851 6417 6.362248 ACCTTATGACTTTGTTGTGGTACTT 58.638 36.000 0.00 0.00 0.00 2.24
4852 6418 5.937111 ACCTTATGACTTTGTTGTGGTACT 58.063 37.500 0.00 0.00 0.00 2.73
4853 6419 6.485648 AGAACCTTATGACTTTGTTGTGGTAC 59.514 38.462 0.00 0.00 0.00 3.34
4854 6420 6.485313 CAGAACCTTATGACTTTGTTGTGGTA 59.515 38.462 0.00 0.00 0.00 3.25
4855 6421 5.299279 CAGAACCTTATGACTTTGTTGTGGT 59.701 40.000 0.00 0.00 0.00 4.16
4856 6422 5.762045 CAGAACCTTATGACTTTGTTGTGG 58.238 41.667 0.00 0.00 0.00 4.17
4857 6423 5.009010 AGCAGAACCTTATGACTTTGTTGTG 59.991 40.000 0.00 0.00 34.44 3.33
4858 6424 5.133221 AGCAGAACCTTATGACTTTGTTGT 58.867 37.500 0.00 0.00 0.00 3.32
4859 6425 5.695851 AGCAGAACCTTATGACTTTGTTG 57.304 39.130 0.00 0.00 0.00 3.33
4860 6426 6.096846 ACAAAGCAGAACCTTATGACTTTGTT 59.903 34.615 18.78 10.50 44.33 2.83
4861 6427 5.594317 ACAAAGCAGAACCTTATGACTTTGT 59.406 36.000 18.78 18.78 43.35 2.83
4862 6428 6.016777 AGACAAAGCAGAACCTTATGACTTTG 60.017 38.462 18.00 18.00 42.35 2.77
4863 6429 6.064717 AGACAAAGCAGAACCTTATGACTTT 58.935 36.000 0.00 0.00 31.20 2.66
4864 6430 5.625150 AGACAAAGCAGAACCTTATGACTT 58.375 37.500 0.00 0.00 0.00 3.01
4865 6431 5.234466 AGACAAAGCAGAACCTTATGACT 57.766 39.130 0.00 0.00 0.00 3.41
4866 6432 7.617041 ATTAGACAAAGCAGAACCTTATGAC 57.383 36.000 0.00 0.00 0.00 3.06
4867 6433 7.121168 CCAATTAGACAAAGCAGAACCTTATGA 59.879 37.037 0.00 0.00 0.00 2.15
4868 6434 7.253422 CCAATTAGACAAAGCAGAACCTTATG 58.747 38.462 0.00 0.00 0.00 1.90
4869 6435 6.127619 GCCAATTAGACAAAGCAGAACCTTAT 60.128 38.462 0.00 0.00 0.00 1.73
4870 6436 5.183140 GCCAATTAGACAAAGCAGAACCTTA 59.817 40.000 0.00 0.00 0.00 2.69
4871 6437 4.021981 GCCAATTAGACAAAGCAGAACCTT 60.022 41.667 0.00 0.00 0.00 3.50
4872 6438 3.507622 GCCAATTAGACAAAGCAGAACCT 59.492 43.478 0.00 0.00 0.00 3.50
4873 6439 3.507622 AGCCAATTAGACAAAGCAGAACC 59.492 43.478 0.00 0.00 0.00 3.62
4874 6440 4.216257 TCAGCCAATTAGACAAAGCAGAAC 59.784 41.667 0.00 0.00 0.00 3.01
4875 6441 4.397420 TCAGCCAATTAGACAAAGCAGAA 58.603 39.130 0.00 0.00 0.00 3.02
4876 6442 4.005650 CTCAGCCAATTAGACAAAGCAGA 58.994 43.478 0.00 0.00 0.00 4.26
4877 6443 4.005650 TCTCAGCCAATTAGACAAAGCAG 58.994 43.478 0.00 0.00 0.00 4.24
4878 6444 4.019792 TCTCAGCCAATTAGACAAAGCA 57.980 40.909 0.00 0.00 0.00 3.91
4879 6445 4.397417 ACATCTCAGCCAATTAGACAAAGC 59.603 41.667 0.00 0.00 0.00 3.51
4880 6446 6.149973 TCAACATCTCAGCCAATTAGACAAAG 59.850 38.462 0.00 0.00 0.00 2.77
4881 6447 6.003326 TCAACATCTCAGCCAATTAGACAAA 58.997 36.000 0.00 0.00 0.00 2.83
4882 6448 5.559770 TCAACATCTCAGCCAATTAGACAA 58.440 37.500 0.00 0.00 0.00 3.18
4883 6449 5.164620 TCAACATCTCAGCCAATTAGACA 57.835 39.130 0.00 0.00 0.00 3.41
4884 6450 5.181748 ACTCAACATCTCAGCCAATTAGAC 58.818 41.667 0.00 0.00 0.00 2.59
4885 6451 5.426689 ACTCAACATCTCAGCCAATTAGA 57.573 39.130 0.00 0.00 0.00 2.10
4886 6452 6.506500 AAACTCAACATCTCAGCCAATTAG 57.493 37.500 0.00 0.00 0.00 1.73
4887 6453 8.579850 AATAAACTCAACATCTCAGCCAATTA 57.420 30.769 0.00 0.00 0.00 1.40
4888 6454 7.472334 AATAAACTCAACATCTCAGCCAATT 57.528 32.000 0.00 0.00 0.00 2.32
4889 6455 7.472334 AAATAAACTCAACATCTCAGCCAAT 57.528 32.000 0.00 0.00 0.00 3.16
4890 6456 6.899393 AAATAAACTCAACATCTCAGCCAA 57.101 33.333 0.00 0.00 0.00 4.52
4891 6457 6.599244 CCTAAATAAACTCAACATCTCAGCCA 59.401 38.462 0.00 0.00 0.00 4.75
4932 6498 3.186909 GGAAGAACAAAAGGTGCACAAC 58.813 45.455 20.43 1.46 0.00 3.32
4941 6507 3.971032 AGAACGCTGGAAGAACAAAAG 57.029 42.857 0.00 0.00 34.07 2.27
4953 6519 2.744202 AGCAACCAGAATAAGAACGCTG 59.256 45.455 0.00 0.00 0.00 5.18
4966 6532 3.525268 AAAACTGAAACCAGCAACCAG 57.475 42.857 0.00 0.00 35.09 4.00
4999 6565 5.940470 AGCCTACACAATCTGGAAACTAAAG 59.060 40.000 0.00 0.00 0.00 1.85
5041 6607 8.671384 AATTTACTACTGTAACAGACTGCAAA 57.329 30.769 1.25 0.00 38.26 3.68
5100 6666 3.412237 TTCTCGGAAAACAGTAAGGGG 57.588 47.619 0.00 0.00 0.00 4.79
5140 6706 1.077212 CACCCATGCCTAGCTGCTT 60.077 57.895 7.79 0.00 0.00 3.91
5142 6708 3.214845 GCACCCATGCCTAGCTGC 61.215 66.667 0.00 0.00 46.97 5.25
5195 6763 1.798813 GGACACAAGTAAAGAGCGTGG 59.201 52.381 0.00 0.00 31.83 4.94
5300 6868 3.768757 CCCAGTCCAATTTAAGGATGCAA 59.231 43.478 0.00 0.00 37.52 4.08
5465 7038 9.478768 TGTTTAAACACGTGATTCTAATACAGA 57.521 29.630 25.01 0.00 33.17 3.41
5598 7173 7.663081 GGAAAAATACATCATCCTGCTATCAGA 59.337 37.037 0.00 0.00 42.95 3.27
5721 7304 6.658188 ACTAAATCTAGACTATCAGCACCC 57.342 41.667 0.00 0.00 0.00 4.61
5746 7329 8.846211 CCAGTTCCTTTTGTACTTGATCTTAAA 58.154 33.333 0.00 0.00 0.00 1.52
5748 7331 7.444183 CACCAGTTCCTTTTGTACTTGATCTTA 59.556 37.037 0.00 0.00 0.00 2.10
5835 7427 0.540454 CATGGCTTGAGCTCCTGAGA 59.460 55.000 12.15 0.00 41.70 3.27
5951 7543 7.439955 TCAGCTGTCTGAAACGTCTTATAAAAA 59.560 33.333 14.67 0.00 45.69 1.94
5952 7544 6.926826 TCAGCTGTCTGAAACGTCTTATAAAA 59.073 34.615 14.67 0.00 45.69 1.52
5953 7545 6.452242 TCAGCTGTCTGAAACGTCTTATAAA 58.548 36.000 14.67 0.00 45.69 1.40
5954 7546 6.020971 TCAGCTGTCTGAAACGTCTTATAA 57.979 37.500 14.67 0.00 45.69 0.98
5955 7547 5.638596 TCAGCTGTCTGAAACGTCTTATA 57.361 39.130 14.67 0.00 45.69 0.98
5956 7548 4.521130 TCAGCTGTCTGAAACGTCTTAT 57.479 40.909 14.67 0.00 45.69 1.73
5958 7550 2.890808 TCAGCTGTCTGAAACGTCTT 57.109 45.000 14.67 0.00 45.69 3.01
5966 7558 3.323115 ACAGTTCAATCTCAGCTGTCTGA 59.677 43.478 14.67 11.06 46.43 3.27
5967 7559 3.661944 ACAGTTCAATCTCAGCTGTCTG 58.338 45.455 14.67 11.87 41.67 3.51
5968 7560 4.348863 AACAGTTCAATCTCAGCTGTCT 57.651 40.909 14.67 0.00 39.19 3.41
5969 7561 5.210715 CAAAACAGTTCAATCTCAGCTGTC 58.789 41.667 14.67 0.00 39.19 3.51
5970 7562 4.037208 CCAAAACAGTTCAATCTCAGCTGT 59.963 41.667 14.67 0.00 41.51 4.40
5971 7563 4.543692 CCAAAACAGTTCAATCTCAGCTG 58.456 43.478 7.63 7.63 0.00 4.24
5972 7564 3.571401 CCCAAAACAGTTCAATCTCAGCT 59.429 43.478 0.00 0.00 0.00 4.24
5973 7565 3.858503 GCCCAAAACAGTTCAATCTCAGC 60.859 47.826 0.00 0.00 0.00 4.26
5974 7566 3.318839 TGCCCAAAACAGTTCAATCTCAG 59.681 43.478 0.00 0.00 0.00 3.35
5975 7567 3.068024 GTGCCCAAAACAGTTCAATCTCA 59.932 43.478 0.00 0.00 0.00 3.27
5976 7568 3.319122 AGTGCCCAAAACAGTTCAATCTC 59.681 43.478 0.00 0.00 0.00 2.75
5977 7569 3.068590 CAGTGCCCAAAACAGTTCAATCT 59.931 43.478 0.00 0.00 0.00 2.40
5978 7570 3.181476 ACAGTGCCCAAAACAGTTCAATC 60.181 43.478 0.00 0.00 0.00 2.67
5979 7571 2.765699 ACAGTGCCCAAAACAGTTCAAT 59.234 40.909 0.00 0.00 0.00 2.57
5980 7572 2.165437 GACAGTGCCCAAAACAGTTCAA 59.835 45.455 0.00 0.00 0.00 2.69
5981 7573 1.748493 GACAGTGCCCAAAACAGTTCA 59.252 47.619 0.00 0.00 0.00 3.18
5982 7574 2.024414 AGACAGTGCCCAAAACAGTTC 58.976 47.619 0.00 0.00 0.00 3.01
5983 7575 1.750778 CAGACAGTGCCCAAAACAGTT 59.249 47.619 0.00 0.00 0.00 3.16
5984 7576 1.064758 TCAGACAGTGCCCAAAACAGT 60.065 47.619 0.00 0.00 0.00 3.55
5985 7577 1.679139 TCAGACAGTGCCCAAAACAG 58.321 50.000 0.00 0.00 0.00 3.16
5986 7578 2.136298 TTCAGACAGTGCCCAAAACA 57.864 45.000 0.00 0.00 0.00 2.83
5987 7579 3.181476 ACATTTCAGACAGTGCCCAAAAC 60.181 43.478 0.00 0.00 0.00 2.43
5988 7580 3.030291 ACATTTCAGACAGTGCCCAAAA 58.970 40.909 0.00 0.00 0.00 2.44
5989 7581 2.622942 GACATTTCAGACAGTGCCCAAA 59.377 45.455 0.00 0.00 0.00 3.28
5990 7582 2.158623 AGACATTTCAGACAGTGCCCAA 60.159 45.455 0.00 0.00 0.00 4.12
5991 7583 1.421268 AGACATTTCAGACAGTGCCCA 59.579 47.619 0.00 0.00 0.00 5.36
5992 7584 2.191128 AGACATTTCAGACAGTGCCC 57.809 50.000 0.00 0.00 0.00 5.36
5993 7585 3.664107 TGTAGACATTTCAGACAGTGCC 58.336 45.455 0.00 0.00 0.00 5.01
5994 7586 4.376413 CGTTGTAGACATTTCAGACAGTGC 60.376 45.833 0.00 0.00 0.00 4.40
5995 7587 4.745125 ACGTTGTAGACATTTCAGACAGTG 59.255 41.667 0.00 0.00 0.00 3.66
5996 7588 4.945246 ACGTTGTAGACATTTCAGACAGT 58.055 39.130 0.00 0.00 0.00 3.55
5997 7589 5.223382 AGACGTTGTAGACATTTCAGACAG 58.777 41.667 0.00 0.00 0.00 3.51
5998 7590 5.196341 AGACGTTGTAGACATTTCAGACA 57.804 39.130 0.00 0.00 0.00 3.41
5999 7591 7.813852 ATAAGACGTTGTAGACATTTCAGAC 57.186 36.000 0.00 0.00 0.00 3.51
6000 7592 9.917129 TTTATAAGACGTTGTAGACATTTCAGA 57.083 29.630 0.00 0.00 0.00 3.27
6005 7597 9.701098 TCACTTTTATAAGACGTTGTAGACATT 57.299 29.630 0.00 0.00 35.30 2.71
6006 7598 9.701098 TTCACTTTTATAAGACGTTGTAGACAT 57.299 29.630 0.00 0.00 35.30 3.06
6007 7599 8.971321 GTTCACTTTTATAAGACGTTGTAGACA 58.029 33.333 0.00 0.00 35.30 3.41
6008 7600 8.971321 TGTTCACTTTTATAAGACGTTGTAGAC 58.029 33.333 0.00 0.00 35.30 2.59
6009 7601 9.188588 CTGTTCACTTTTATAAGACGTTGTAGA 57.811 33.333 0.00 0.00 35.30 2.59
6010 7602 9.188588 TCTGTTCACTTTTATAAGACGTTGTAG 57.811 33.333 0.00 0.00 35.30 2.74
6011 7603 9.188588 CTCTGTTCACTTTTATAAGACGTTGTA 57.811 33.333 0.00 0.00 35.30 2.41
6012 7604 7.170998 CCTCTGTTCACTTTTATAAGACGTTGT 59.829 37.037 0.00 0.00 35.30 3.32
6013 7605 7.384115 TCCTCTGTTCACTTTTATAAGACGTTG 59.616 37.037 0.00 0.00 35.30 4.10
6014 7606 7.439381 TCCTCTGTTCACTTTTATAAGACGTT 58.561 34.615 0.00 0.00 35.30 3.99
6015 7607 6.989659 TCCTCTGTTCACTTTTATAAGACGT 58.010 36.000 0.00 0.00 35.30 4.34
6016 7608 7.599245 ACTTCCTCTGTTCACTTTTATAAGACG 59.401 37.037 0.00 0.00 35.30 4.18
6017 7609 8.834749 ACTTCCTCTGTTCACTTTTATAAGAC 57.165 34.615 0.00 0.00 35.30 3.01
6024 7616 9.628500 AATAAGTTACTTCCTCTGTTCACTTTT 57.372 29.630 0.00 0.00 0.00 2.27
6025 7617 9.628500 AAATAAGTTACTTCCTCTGTTCACTTT 57.372 29.630 0.00 0.00 0.00 2.66
6026 7618 9.057089 CAAATAAGTTACTTCCTCTGTTCACTT 57.943 33.333 0.00 0.00 0.00 3.16
6027 7619 7.173390 GCAAATAAGTTACTTCCTCTGTTCACT 59.827 37.037 0.00 0.00 0.00 3.41
6028 7620 7.041372 TGCAAATAAGTTACTTCCTCTGTTCAC 60.041 37.037 0.00 0.00 0.00 3.18
6029 7621 6.995686 TGCAAATAAGTTACTTCCTCTGTTCA 59.004 34.615 0.00 0.00 0.00 3.18
6030 7622 7.435068 TGCAAATAAGTTACTTCCTCTGTTC 57.565 36.000 0.00 0.00 0.00 3.18
6031 7623 8.409358 AATGCAAATAAGTTACTTCCTCTGTT 57.591 30.769 0.00 0.00 0.00 3.16
6032 7624 8.409358 AAATGCAAATAAGTTACTTCCTCTGT 57.591 30.769 0.00 0.00 0.00 3.41
6037 7629 9.869757 ACCAATAAATGCAAATAAGTTACTTCC 57.130 29.630 0.00 0.00 0.00 3.46
6041 7633 9.855021 ACAGACCAATAAATGCAAATAAGTTAC 57.145 29.630 0.00 0.00 0.00 2.50
6042 7634 9.853555 CACAGACCAATAAATGCAAATAAGTTA 57.146 29.630 0.00 0.00 0.00 2.24
6043 7635 8.367156 ACACAGACCAATAAATGCAAATAAGTT 58.633 29.630 0.00 0.00 0.00 2.66
6076 7668 2.350863 AGATCAACTTCAGGGAGGGT 57.649 50.000 0.00 0.00 0.00 4.34
6091 7683 7.174599 AGCATAGCTCAATCCAACAAATAGATC 59.825 37.037 0.00 0.00 30.62 2.75
6191 7844 6.181206 TGAATACATCGGGATGGACAATTA 57.819 37.500 12.87 0.00 42.91 1.40
6249 7902 1.580059 TATGTTCAGGTGGGGAGTCC 58.420 55.000 0.00 0.00 0.00 3.85
6250 7903 3.933861 AATATGTTCAGGTGGGGAGTC 57.066 47.619 0.00 0.00 0.00 3.36
6251 7904 3.591527 TGAAATATGTTCAGGTGGGGAGT 59.408 43.478 0.00 0.00 0.00 3.85
6252 7905 4.235079 TGAAATATGTTCAGGTGGGGAG 57.765 45.455 0.00 0.00 0.00 4.30
6253 7906 4.666412 TTGAAATATGTTCAGGTGGGGA 57.334 40.909 0.00 0.00 0.00 4.81
6254 7907 5.478407 GTTTTGAAATATGTTCAGGTGGGG 58.522 41.667 0.00 0.00 0.00 4.96
6255 7908 5.160641 CGTTTTGAAATATGTTCAGGTGGG 58.839 41.667 0.00 0.00 0.00 4.61
6256 7909 5.160641 CCGTTTTGAAATATGTTCAGGTGG 58.839 41.667 0.00 0.00 0.00 4.61
6257 7910 5.768317 ACCGTTTTGAAATATGTTCAGGTG 58.232 37.500 7.71 0.00 0.00 4.00
6258 7911 6.399639 AACCGTTTTGAAATATGTTCAGGT 57.600 33.333 0.00 0.00 0.00 4.00
6259 7912 8.293867 TCTAAACCGTTTTGAAATATGTTCAGG 58.706 33.333 0.96 0.00 0.00 3.86
6260 7913 9.329913 CTCTAAACCGTTTTGAAATATGTTCAG 57.670 33.333 0.96 0.00 0.00 3.02
6261 7914 8.842280 ACTCTAAACCGTTTTGAAATATGTTCA 58.158 29.630 0.96 0.00 0.00 3.18
6262 7915 9.673454 AACTCTAAACCGTTTTGAAATATGTTC 57.327 29.630 0.96 0.00 0.00 3.18
6268 7921 8.895737 TCTGTAAACTCTAAACCGTTTTGAAAT 58.104 29.630 0.96 0.00 35.25 2.17
6269 7922 8.266392 TCTGTAAACTCTAAACCGTTTTGAAA 57.734 30.769 0.96 0.00 35.25 2.69
6270 7923 7.011669 CCTCTGTAAACTCTAAACCGTTTTGAA 59.988 37.037 0.96 0.00 35.25 2.69
6271 7924 6.480981 CCTCTGTAAACTCTAAACCGTTTTGA 59.519 38.462 0.96 4.95 35.25 2.69
6272 7925 6.259387 ACCTCTGTAAACTCTAAACCGTTTTG 59.741 38.462 0.96 0.20 35.25 2.44
6273 7926 6.351711 ACCTCTGTAAACTCTAAACCGTTTT 58.648 36.000 0.96 0.00 35.25 2.43
6274 7927 5.922053 ACCTCTGTAAACTCTAAACCGTTT 58.078 37.500 1.40 1.40 37.19 3.60
6275 7928 5.069516 TGACCTCTGTAAACTCTAAACCGTT 59.930 40.000 0.00 0.00 0.00 4.44
6276 7929 4.586001 TGACCTCTGTAAACTCTAAACCGT 59.414 41.667 0.00 0.00 0.00 4.83
6277 7930 5.130292 TGACCTCTGTAAACTCTAAACCG 57.870 43.478 0.00 0.00 0.00 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.