Multiple sequence alignment - TraesCS2B01G279200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G279200 chr2B 100.000 3630 0 0 1 3630 385559749 385563378 0.000000e+00 6704.0
1 TraesCS2B01G279200 chr2D 95.528 2773 78 16 875 3627 317940642 317943388 0.000000e+00 4392.0
2 TraesCS2B01G279200 chr2D 86.517 534 41 9 1087 1613 610709438 610708929 3.170000e-155 558.0
3 TraesCS2B01G279200 chr2D 93.519 216 14 0 2123 2338 610707533 610707318 4.520000e-84 322.0
4 TraesCS2B01G279200 chr2D 91.743 109 6 2 680 785 317885589 317885697 8.120000e-32 148.0
5 TraesCS2B01G279200 chr2D 98.148 54 1 0 798 851 317886163 317886216 1.070000e-15 95.3
6 TraesCS2B01G279200 chr2D 96.296 54 2 0 798 851 317940407 317940460 4.990000e-14 89.8
7 TraesCS2B01G279200 chr2D 97.778 45 1 0 742 786 317940319 317940363 1.080000e-10 78.7
8 TraesCS2B01G279200 chr2D 94.595 37 2 0 2348 2384 12523826 12523790 1.410000e-04 58.4
9 TraesCS2B01G279200 chr2A 94.566 1914 71 17 875 2762 415063994 415062088 0.000000e+00 2928.0
10 TraesCS2B01G279200 chr2A 89.735 1695 114 27 991 2630 750148206 750149895 0.000000e+00 2111.0
11 TraesCS2B01G279200 chr2A 92.963 881 55 5 2748 3627 414995404 414994530 0.000000e+00 1277.0
12 TraesCS2B01G279200 chr2A 81.373 204 32 5 364 566 66764219 66764021 1.040000e-35 161.0
13 TraesCS2B01G279200 chr2A 92.537 67 5 0 719 785 415067137 415067071 2.980000e-16 97.1
14 TraesCS2B01G279200 chr2A 98.148 54 1 0 798 851 415064489 415064436 1.070000e-15 95.3
15 TraesCS2B01G279200 chr7D 89.637 1708 95 26 987 2642 498273474 498275151 0.000000e+00 2098.0
16 TraesCS2B01G279200 chr5A 93.122 567 36 3 1 566 647377831 647378395 0.000000e+00 828.0
17 TraesCS2B01G279200 chr5A 86.170 94 13 0 567 660 577944633 577944726 6.410000e-18 102.0
18 TraesCS2B01G279200 chr4D 91.887 567 42 4 1 566 330352793 330353356 0.000000e+00 789.0
19 TraesCS2B01G279200 chr7B 89.613 568 55 3 1 566 104733205 104733770 0.000000e+00 719.0
20 TraesCS2B01G279200 chr3B 89.418 567 57 3 1 566 493858411 493857847 0.000000e+00 712.0
21 TraesCS2B01G279200 chr6D 90.304 526 33 9 51 575 347353685 347354193 0.000000e+00 673.0
22 TraesCS2B01G279200 chr6D 80.556 108 17 4 2272 2377 97520356 97520251 3.000000e-11 80.5
23 TraesCS2B01G279200 chr1D 85.062 569 76 6 1 566 293127947 293128509 4.070000e-159 571.0
24 TraesCS2B01G279200 chr1D 81.579 380 66 4 1 377 403526653 403527031 9.790000e-81 311.0
25 TraesCS2B01G279200 chr6B 94.758 248 12 1 319 566 709519497 709519743 5.690000e-103 385.0
26 TraesCS2B01G279200 chr3D 77.778 567 118 7 2 566 508450997 508451557 3.470000e-90 342.0
27 TraesCS2B01G279200 chr3A 75.623 562 115 14 11 566 208035719 208035174 3.600000e-65 259.0
28 TraesCS2B01G279200 chr5B 75.446 505 105 15 2005 2504 579809563 579810053 1.010000e-55 228.0
29 TraesCS2B01G279200 chrUn 77.297 185 36 6 2196 2377 293161346 293161165 1.780000e-18 104.0
30 TraesCS2B01G279200 chrUn 77.297 185 36 6 2196 2377 409868786 409868967 1.780000e-18 104.0
31 TraesCS2B01G279200 chr7A 85.106 94 12 2 567 660 449056558 449056649 1.070000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G279200 chr2B 385559749 385563378 3629 False 6704.000000 6704 100.000000 1 3630 1 chr2B.!!$F1 3629
1 TraesCS2B01G279200 chr2D 317940319 317943388 3069 False 1520.166667 4392 96.534000 742 3627 3 chr2D.!!$F2 2885
2 TraesCS2B01G279200 chr2D 610707318 610709438 2120 True 440.000000 558 90.018000 1087 2338 2 chr2D.!!$R2 1251
3 TraesCS2B01G279200 chr2A 750148206 750149895 1689 False 2111.000000 2111 89.735000 991 2630 1 chr2A.!!$F1 1639
4 TraesCS2B01G279200 chr2A 414994530 414995404 874 True 1277.000000 1277 92.963000 2748 3627 1 chr2A.!!$R2 879
5 TraesCS2B01G279200 chr2A 415062088 415067137 5049 True 1040.133333 2928 95.083667 719 2762 3 chr2A.!!$R3 2043
6 TraesCS2B01G279200 chr7D 498273474 498275151 1677 False 2098.000000 2098 89.637000 987 2642 1 chr7D.!!$F1 1655
7 TraesCS2B01G279200 chr5A 647377831 647378395 564 False 828.000000 828 93.122000 1 566 1 chr5A.!!$F2 565
8 TraesCS2B01G279200 chr4D 330352793 330353356 563 False 789.000000 789 91.887000 1 566 1 chr4D.!!$F1 565
9 TraesCS2B01G279200 chr7B 104733205 104733770 565 False 719.000000 719 89.613000 1 566 1 chr7B.!!$F1 565
10 TraesCS2B01G279200 chr3B 493857847 493858411 564 True 712.000000 712 89.418000 1 566 1 chr3B.!!$R1 565
11 TraesCS2B01G279200 chr6D 347353685 347354193 508 False 673.000000 673 90.304000 51 575 1 chr6D.!!$F1 524
12 TraesCS2B01G279200 chr1D 293127947 293128509 562 False 571.000000 571 85.062000 1 566 1 chr1D.!!$F1 565
13 TraesCS2B01G279200 chr3D 508450997 508451557 560 False 342.000000 342 77.778000 2 566 1 chr3D.!!$F1 564
14 TraesCS2B01G279200 chr3A 208035174 208035719 545 True 259.000000 259 75.623000 11 566 1 chr3A.!!$R1 555

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
711 717 0.038618 ACATCGTACGCAACAGAGCA 60.039 50.0 11.24 0.0 0.0 4.26 F
792 798 0.381801 CACGCAGCTTGACACCTTTT 59.618 50.0 0.00 0.0 0.0 2.27 F
858 3433 0.861837 GCTTCGTGTCACAACCTCAG 59.138 55.0 3.42 0.0 0.0 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1828 4917 1.446791 CCTGCTCCTCCTCATGCTC 59.553 63.158 0.00 0.00 0.0 4.26 R
2101 5234 1.514228 GTGCGCGTCGATCTCTTCA 60.514 57.895 8.43 0.00 0.0 3.02 R
2804 7124 3.293311 GATGCCATACAATGTGCATCC 57.707 47.619 20.04 7.82 46.5 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
162 163 4.696877 TGGTTCACTTGCATAGATGAACTG 59.303 41.667 21.94 5.02 46.56 3.16
189 190 4.511246 ATCTCGGGGCCGACGGTA 62.511 66.667 16.73 7.24 44.01 4.02
216 217 1.696063 CCATGGTGGAATGGTGGATC 58.304 55.000 2.57 0.00 40.96 3.36
237 238 1.512771 CAAAAACGAAGAAGCGTGCAC 59.487 47.619 6.82 6.82 44.86 4.57
243 244 0.110464 GAAGAAGCGTGCACTCAAGC 60.110 55.000 16.19 10.87 45.96 4.01
293 295 3.303135 ACGGCTTGGACGCTCTGA 61.303 61.111 0.00 0.00 37.73 3.27
321 323 0.111704 CAACGCACGAGTCTTCAACG 60.112 55.000 0.00 0.00 0.00 4.10
360 364 1.551452 AGCTAGAGACCTTGTTCGCT 58.449 50.000 0.00 0.00 0.00 4.93
389 393 8.830915 TCTTAGATGAACTTAGAGAGTGGAAT 57.169 34.615 0.00 0.00 39.00 3.01
452 456 9.600646 GTGAGACATTAGCTTAGTTTCTTTTTC 57.399 33.333 0.00 0.00 0.00 2.29
461 465 3.710326 AGTTTCTTTTTCGGTTGGAGC 57.290 42.857 0.00 0.00 0.00 4.70
607 613 9.931698 TTAGACCTTAACTAGATAGGATTGTCA 57.068 33.333 13.82 0.00 33.21 3.58
608 614 8.840200 AGACCTTAACTAGATAGGATTGTCAA 57.160 34.615 13.82 0.00 33.21 3.18
609 615 9.268282 AGACCTTAACTAGATAGGATTGTCAAA 57.732 33.333 13.82 0.00 33.21 2.69
610 616 9.886132 GACCTTAACTAGATAGGATTGTCAAAA 57.114 33.333 13.82 0.00 33.21 2.44
625 631 9.438291 GGATTGTCAAAAATATATGAAGTGACG 57.562 33.333 11.46 0.00 37.34 4.35
639 645 6.467723 TGAAGTGACGATTTTAGAAGAAGC 57.532 37.500 0.00 0.00 0.00 3.86
640 646 6.223852 TGAAGTGACGATTTTAGAAGAAGCT 58.776 36.000 0.00 0.00 0.00 3.74
641 647 7.375834 TGAAGTGACGATTTTAGAAGAAGCTA 58.624 34.615 0.00 0.00 0.00 3.32
642 648 7.328737 TGAAGTGACGATTTTAGAAGAAGCTAC 59.671 37.037 0.00 0.00 0.00 3.58
643 649 5.800941 AGTGACGATTTTAGAAGAAGCTACG 59.199 40.000 0.00 0.00 0.00 3.51
644 650 5.004535 GTGACGATTTTAGAAGAAGCTACGG 59.995 44.000 0.00 0.00 0.00 4.02
645 651 5.106038 TGACGATTTTAGAAGAAGCTACGGA 60.106 40.000 0.00 0.00 0.00 4.69
646 652 5.341617 ACGATTTTAGAAGAAGCTACGGAG 58.658 41.667 0.00 0.00 0.00 4.63
647 653 4.740695 CGATTTTAGAAGAAGCTACGGAGG 59.259 45.833 0.00 0.00 0.00 4.30
648 654 4.467198 TTTTAGAAGAAGCTACGGAGGG 57.533 45.455 0.00 0.00 0.00 4.30
649 655 3.377253 TTAGAAGAAGCTACGGAGGGA 57.623 47.619 0.00 0.00 0.00 4.20
650 656 1.770294 AGAAGAAGCTACGGAGGGAG 58.230 55.000 0.00 0.00 0.00 4.30
651 657 1.285373 AGAAGAAGCTACGGAGGGAGA 59.715 52.381 0.00 0.00 0.00 3.71
652 658 1.406180 GAAGAAGCTACGGAGGGAGAC 59.594 57.143 0.00 0.00 0.00 3.36
653 659 0.748729 AGAAGCTACGGAGGGAGACG 60.749 60.000 0.00 0.00 0.00 4.18
654 660 0.747283 GAAGCTACGGAGGGAGACGA 60.747 60.000 0.00 0.00 0.00 4.20
655 661 0.106619 AAGCTACGGAGGGAGACGAT 60.107 55.000 0.00 0.00 0.00 3.73
656 662 0.106619 AGCTACGGAGGGAGACGATT 60.107 55.000 0.00 0.00 0.00 3.34
657 663 0.311477 GCTACGGAGGGAGACGATTC 59.689 60.000 0.00 0.00 0.00 2.52
658 664 1.970092 CTACGGAGGGAGACGATTCT 58.030 55.000 0.00 0.00 33.37 2.40
659 665 1.604755 CTACGGAGGGAGACGATTCTG 59.395 57.143 0.00 0.00 29.47 3.02
660 666 1.066587 CGGAGGGAGACGATTCTGC 59.933 63.158 0.00 0.00 39.46 4.26
665 671 3.551259 GGAGACGATTCTGCCCAAA 57.449 52.632 0.00 0.00 34.14 3.28
666 672 1.821216 GGAGACGATTCTGCCCAAAA 58.179 50.000 0.00 0.00 34.14 2.44
667 673 1.740025 GGAGACGATTCTGCCCAAAAG 59.260 52.381 0.00 0.00 34.14 2.27
668 674 2.615493 GGAGACGATTCTGCCCAAAAGA 60.615 50.000 0.00 0.00 34.14 2.52
669 675 3.074412 GAGACGATTCTGCCCAAAAGAA 58.926 45.455 0.00 0.00 38.01 2.52
670 676 2.814336 AGACGATTCTGCCCAAAAGAAC 59.186 45.455 0.00 0.00 36.52 3.01
671 677 1.886542 ACGATTCTGCCCAAAAGAACC 59.113 47.619 0.00 0.00 36.52 3.62
672 678 1.135689 CGATTCTGCCCAAAAGAACCG 60.136 52.381 0.00 0.00 34.53 4.44
673 679 1.202348 GATTCTGCCCAAAAGAACCGG 59.798 52.381 0.00 0.00 36.52 5.28
674 680 1.460273 TTCTGCCCAAAAGAACCGGC 61.460 55.000 0.00 0.00 41.99 6.13
675 681 2.915137 TGCCCAAAAGAACCGGCC 60.915 61.111 0.00 0.00 40.87 6.13
676 682 3.691342 GCCCAAAAGAACCGGCCC 61.691 66.667 0.00 0.00 35.23 5.80
677 683 2.117423 CCCAAAAGAACCGGCCCT 59.883 61.111 0.00 0.00 0.00 5.19
678 684 1.381076 CCCAAAAGAACCGGCCCTA 59.619 57.895 0.00 0.00 0.00 3.53
679 685 0.251430 CCCAAAAGAACCGGCCCTAA 60.251 55.000 0.00 0.00 0.00 2.69
680 686 1.623163 CCAAAAGAACCGGCCCTAAA 58.377 50.000 0.00 0.00 0.00 1.85
681 687 2.176045 CCAAAAGAACCGGCCCTAAAT 58.824 47.619 0.00 0.00 0.00 1.40
682 688 2.165641 CCAAAAGAACCGGCCCTAAATC 59.834 50.000 0.00 0.00 0.00 2.17
683 689 1.746470 AAAGAACCGGCCCTAAATCG 58.254 50.000 0.00 0.00 0.00 3.34
685 691 0.979187 AGAACCGGCCCTAAATCGGA 60.979 55.000 0.00 0.00 45.96 4.55
686 692 0.812811 GAACCGGCCCTAAATCGGAC 60.813 60.000 0.00 0.00 45.96 4.79
687 693 1.555477 AACCGGCCCTAAATCGGACA 61.555 55.000 0.00 0.00 45.96 4.02
688 694 1.523032 CCGGCCCTAAATCGGACAC 60.523 63.158 0.00 0.00 45.96 3.67
689 695 1.520666 CGGCCCTAAATCGGACACT 59.479 57.895 0.00 0.00 0.00 3.55
690 696 0.107848 CGGCCCTAAATCGGACACTT 60.108 55.000 0.00 0.00 0.00 3.16
691 697 1.664873 GGCCCTAAATCGGACACTTC 58.335 55.000 0.00 0.00 0.00 3.01
692 698 1.065709 GGCCCTAAATCGGACACTTCA 60.066 52.381 0.00 0.00 0.00 3.02
693 699 2.007608 GCCCTAAATCGGACACTTCAC 58.992 52.381 0.00 0.00 0.00 3.18
694 700 2.614481 GCCCTAAATCGGACACTTCACA 60.614 50.000 0.00 0.00 0.00 3.58
695 701 3.873910 CCCTAAATCGGACACTTCACAT 58.126 45.455 0.00 0.00 0.00 3.21
696 702 3.871594 CCCTAAATCGGACACTTCACATC 59.128 47.826 0.00 0.00 0.00 3.06
697 703 3.551890 CCTAAATCGGACACTTCACATCG 59.448 47.826 0.00 0.00 0.00 3.84
698 704 2.743636 AATCGGACACTTCACATCGT 57.256 45.000 0.00 0.00 0.00 3.73
699 705 3.861276 AATCGGACACTTCACATCGTA 57.139 42.857 0.00 0.00 0.00 3.43
700 706 2.624316 TCGGACACTTCACATCGTAC 57.376 50.000 0.00 0.00 0.00 3.67
701 707 1.135888 TCGGACACTTCACATCGTACG 60.136 52.381 9.53 9.53 37.04 3.67
702 708 0.989890 GGACACTTCACATCGTACGC 59.010 55.000 11.24 0.00 0.00 4.42
703 709 1.667756 GGACACTTCACATCGTACGCA 60.668 52.381 11.24 0.00 0.00 5.24
704 710 2.055838 GACACTTCACATCGTACGCAA 58.944 47.619 11.24 0.00 0.00 4.85
705 711 1.790623 ACACTTCACATCGTACGCAAC 59.209 47.619 11.24 0.00 0.00 4.17
706 712 1.790043 CACTTCACATCGTACGCAACA 59.210 47.619 11.24 0.00 0.00 3.33
707 713 2.058798 ACTTCACATCGTACGCAACAG 58.941 47.619 11.24 4.09 0.00 3.16
708 714 2.287970 ACTTCACATCGTACGCAACAGA 60.288 45.455 11.24 1.79 0.00 3.41
709 715 1.977188 TCACATCGTACGCAACAGAG 58.023 50.000 11.24 0.00 0.00 3.35
710 716 0.366871 CACATCGTACGCAACAGAGC 59.633 55.000 11.24 0.00 0.00 4.09
711 717 0.038618 ACATCGTACGCAACAGAGCA 60.039 50.000 11.24 0.00 0.00 4.26
712 718 1.067693 CATCGTACGCAACAGAGCAA 58.932 50.000 11.24 0.00 0.00 3.91
713 719 1.459209 CATCGTACGCAACAGAGCAAA 59.541 47.619 11.24 0.00 0.00 3.68
714 720 0.856641 TCGTACGCAACAGAGCAAAC 59.143 50.000 11.24 0.00 0.00 2.93
715 721 0.859232 CGTACGCAACAGAGCAAACT 59.141 50.000 0.52 0.00 0.00 2.66
716 722 1.136611 CGTACGCAACAGAGCAAACTC 60.137 52.381 0.52 0.00 43.82 3.01
786 792 2.179547 CCACACACGCAGCTTGACA 61.180 57.895 5.78 0.00 0.00 3.58
787 793 1.010797 CACACACGCAGCTTGACAC 60.011 57.895 5.78 0.00 0.00 3.67
788 794 2.180204 ACACACGCAGCTTGACACC 61.180 57.895 5.78 0.00 0.00 4.16
789 795 1.889105 CACACGCAGCTTGACACCT 60.889 57.895 5.78 0.00 0.00 4.00
791 797 0.748005 ACACGCAGCTTGACACCTTT 60.748 50.000 5.78 0.00 0.00 3.11
792 798 0.381801 CACGCAGCTTGACACCTTTT 59.618 50.000 0.00 0.00 0.00 2.27
793 799 0.381801 ACGCAGCTTGACACCTTTTG 59.618 50.000 0.00 0.00 0.00 2.44
795 801 1.597937 CGCAGCTTGACACCTTTTGAC 60.598 52.381 0.00 0.00 0.00 3.18
796 802 1.678101 GCAGCTTGACACCTTTTGACT 59.322 47.619 0.00 0.00 0.00 3.41
851 3426 0.958822 TCAGCTAGCTTCGTGTCACA 59.041 50.000 16.46 0.00 0.00 3.58
852 3427 1.339929 TCAGCTAGCTTCGTGTCACAA 59.660 47.619 16.46 0.00 0.00 3.33
853 3428 1.457303 CAGCTAGCTTCGTGTCACAAC 59.543 52.381 16.46 0.00 0.00 3.32
855 3430 1.605712 GCTAGCTTCGTGTCACAACCT 60.606 52.381 7.70 0.00 0.00 3.50
856 3431 2.329379 CTAGCTTCGTGTCACAACCTC 58.671 52.381 3.42 0.00 0.00 3.85
858 3433 0.861837 GCTTCGTGTCACAACCTCAG 59.138 55.000 3.42 0.00 0.00 3.35
861 3436 2.684001 TCGTGTCACAACCTCAGTTT 57.316 45.000 3.42 0.00 32.45 2.66
862 3437 2.980568 TCGTGTCACAACCTCAGTTTT 58.019 42.857 3.42 0.00 32.45 2.43
863 3438 3.340034 TCGTGTCACAACCTCAGTTTTT 58.660 40.909 3.42 0.00 32.45 1.94
865 3440 3.374058 CGTGTCACAACCTCAGTTTTTCT 59.626 43.478 3.42 0.00 32.45 2.52
866 3441 4.142687 CGTGTCACAACCTCAGTTTTTCTT 60.143 41.667 3.42 0.00 32.45 2.52
867 3442 5.332707 GTGTCACAACCTCAGTTTTTCTTC 58.667 41.667 0.00 0.00 32.45 2.87
869 3444 4.640647 GTCACAACCTCAGTTTTTCTTCCT 59.359 41.667 0.00 0.00 32.45 3.36
870 3445 4.881850 TCACAACCTCAGTTTTTCTTCCTC 59.118 41.667 0.00 0.00 32.45 3.71
871 3446 4.036852 CACAACCTCAGTTTTTCTTCCTCC 59.963 45.833 0.00 0.00 32.45 4.30
872 3447 4.079730 ACAACCTCAGTTTTTCTTCCTCCT 60.080 41.667 0.00 0.00 32.45 3.69
873 3448 4.092116 ACCTCAGTTTTTCTTCCTCCTG 57.908 45.455 0.00 0.00 0.00 3.86
874 3449 2.816672 CCTCAGTTTTTCTTCCTCCTGC 59.183 50.000 0.00 0.00 0.00 4.85
876 3451 2.443255 TCAGTTTTTCTTCCTCCTGCCT 59.557 45.455 0.00 0.00 0.00 4.75
975 4026 2.137177 AATCCCCCTTGTCCGTGTGG 62.137 60.000 0.00 0.00 0.00 4.17
980 4031 1.519408 CCCTTGTCCGTGTGGTTTAG 58.481 55.000 0.00 0.00 36.30 1.85
1442 4519 2.795973 CCGCGTCGACCTCATGTA 59.204 61.111 10.58 0.00 0.00 2.29
1623 4700 2.579787 GACGGAGCGGACATGTCG 60.580 66.667 19.33 15.06 0.00 4.35
1650 4727 1.218316 GCGGGAGATGAAGGACGTT 59.782 57.895 0.00 0.00 0.00 3.99
1701 4778 1.946984 CCAACCTGTGGGACTACCTA 58.053 55.000 0.00 0.00 44.64 3.08
1980 5113 9.769093 CCGTTACCTTATTTCAAACTAATCTTG 57.231 33.333 0.00 0.00 0.00 3.02
2425 6744 0.252513 TGTCCTTCGGGATGGGAAGA 60.253 55.000 3.26 0.00 46.96 2.87
2804 7124 6.510746 TGTTCTTGTGAATATATCTTCGCG 57.489 37.500 0.00 0.00 38.25 5.87
2819 7139 0.936600 TCGCGGATGCACATTGTATG 59.063 50.000 6.13 0.00 42.97 2.39
3257 7587 8.577048 TGAATAAGAGTACTATTAGGATCCGG 57.423 38.462 14.76 0.00 0.00 5.14
3259 7589 9.240734 GAATAAGAGTACTATTAGGATCCGGAA 57.759 37.037 9.01 5.29 0.00 4.30
3260 7590 9.597681 AATAAGAGTACTATTAGGATCCGGAAA 57.402 33.333 9.01 0.00 0.00 3.13
3261 7591 7.909485 AAGAGTACTATTAGGATCCGGAAAA 57.091 36.000 9.01 0.71 0.00 2.29
3262 7592 7.909485 AGAGTACTATTAGGATCCGGAAAAA 57.091 36.000 9.01 0.30 0.00 1.94
3296 7626 3.910627 AGGTCCTAGAATGTCCAAACACT 59.089 43.478 0.00 0.00 38.48 3.55
3317 7647 0.238289 CGAACATTTGCACGCTCCTT 59.762 50.000 0.00 0.00 0.00 3.36
3488 7819 7.787623 ACTCAAGGGCTTAACTTAGTAGTAA 57.212 36.000 0.00 0.00 33.17 2.24
3528 7859 5.006068 CACATTCAGGATCGTAACTGATGTG 59.994 44.000 19.42 19.42 42.73 3.21
3627 7958 4.389992 CGCAACTGATTCATCTGTACAACT 59.610 41.667 0.00 0.00 37.90 3.16
3628 7959 5.625251 GCAACTGATTCATCTGTACAACTG 58.375 41.667 0.00 0.00 37.90 3.16
3629 7960 5.391310 GCAACTGATTCATCTGTACAACTGG 60.391 44.000 0.00 0.00 37.90 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
153 154 4.660168 AGATTGGAAGTTGCAGTTCATCT 58.340 39.130 11.72 4.07 29.20 2.90
162 163 1.657751 GCCCCGAGATTGGAAGTTGC 61.658 60.000 0.00 0.00 0.00 4.17
189 190 2.104792 CCATTCCACCATGGTATCGTCT 59.895 50.000 19.28 0.00 39.26 4.18
216 217 1.120437 GCACGCTTCTTCGTTTTTGG 58.880 50.000 0.00 0.00 41.21 3.28
237 238 0.610687 AAACCCTCCTCTCGCTTGAG 59.389 55.000 0.00 0.00 41.33 3.02
243 244 1.941668 GCTGTCAAAACCCTCCTCTCG 60.942 57.143 0.00 0.00 0.00 4.04
293 295 2.650602 CGTGCGTTGCGTTGCTTT 60.651 55.556 0.00 0.00 0.00 3.51
321 323 4.404691 CACTTGTTGCTCCCTCCC 57.595 61.111 0.00 0.00 0.00 4.30
389 393 4.276431 CCTCCAACACCGTTAAAAGCTAAA 59.724 41.667 0.00 0.00 0.00 1.85
581 587 9.931698 TGACAATCCTATCTAGTTAAGGTCTAA 57.068 33.333 7.38 0.00 0.00 2.10
582 588 9.931698 TTGACAATCCTATCTAGTTAAGGTCTA 57.068 33.333 7.38 0.00 0.00 2.59
583 589 8.840200 TTGACAATCCTATCTAGTTAAGGTCT 57.160 34.615 7.38 0.00 0.00 3.85
584 590 9.886132 TTTTGACAATCCTATCTAGTTAAGGTC 57.114 33.333 7.38 0.00 0.00 3.85
599 605 9.438291 CGTCACTTCATATATTTTTGACAATCC 57.562 33.333 11.36 0.00 33.07 3.01
613 619 8.821894 GCTTCTTCTAAAATCGTCACTTCATAT 58.178 33.333 0.00 0.00 0.00 1.78
614 620 8.035394 AGCTTCTTCTAAAATCGTCACTTCATA 58.965 33.333 0.00 0.00 0.00 2.15
615 621 6.876257 AGCTTCTTCTAAAATCGTCACTTCAT 59.124 34.615 0.00 0.00 0.00 2.57
616 622 6.223852 AGCTTCTTCTAAAATCGTCACTTCA 58.776 36.000 0.00 0.00 0.00 3.02
617 623 6.713792 AGCTTCTTCTAAAATCGTCACTTC 57.286 37.500 0.00 0.00 0.00 3.01
618 624 6.308282 CGTAGCTTCTTCTAAAATCGTCACTT 59.692 38.462 0.00 0.00 0.00 3.16
619 625 5.800941 CGTAGCTTCTTCTAAAATCGTCACT 59.199 40.000 0.00 0.00 0.00 3.41
620 626 5.004535 CCGTAGCTTCTTCTAAAATCGTCAC 59.995 44.000 0.00 0.00 0.00 3.67
621 627 5.100259 CCGTAGCTTCTTCTAAAATCGTCA 58.900 41.667 0.00 0.00 0.00 4.35
622 628 5.338365 TCCGTAGCTTCTTCTAAAATCGTC 58.662 41.667 0.00 0.00 0.00 4.20
623 629 5.320549 TCCGTAGCTTCTTCTAAAATCGT 57.679 39.130 0.00 0.00 0.00 3.73
624 630 4.740695 CCTCCGTAGCTTCTTCTAAAATCG 59.259 45.833 0.00 0.00 0.00 3.34
625 631 5.051153 CCCTCCGTAGCTTCTTCTAAAATC 58.949 45.833 0.00 0.00 0.00 2.17
626 632 4.715297 TCCCTCCGTAGCTTCTTCTAAAAT 59.285 41.667 0.00 0.00 0.00 1.82
627 633 4.091549 TCCCTCCGTAGCTTCTTCTAAAA 58.908 43.478 0.00 0.00 0.00 1.52
628 634 3.700038 CTCCCTCCGTAGCTTCTTCTAAA 59.300 47.826 0.00 0.00 0.00 1.85
629 635 3.053842 TCTCCCTCCGTAGCTTCTTCTAA 60.054 47.826 0.00 0.00 0.00 2.10
630 636 2.508716 TCTCCCTCCGTAGCTTCTTCTA 59.491 50.000 0.00 0.00 0.00 2.10
631 637 1.285373 TCTCCCTCCGTAGCTTCTTCT 59.715 52.381 0.00 0.00 0.00 2.85
632 638 1.406180 GTCTCCCTCCGTAGCTTCTTC 59.594 57.143 0.00 0.00 0.00 2.87
633 639 1.476477 GTCTCCCTCCGTAGCTTCTT 58.524 55.000 0.00 0.00 0.00 2.52
634 640 0.748729 CGTCTCCCTCCGTAGCTTCT 60.749 60.000 0.00 0.00 0.00 2.85
635 641 0.747283 TCGTCTCCCTCCGTAGCTTC 60.747 60.000 0.00 0.00 0.00 3.86
636 642 0.106619 ATCGTCTCCCTCCGTAGCTT 60.107 55.000 0.00 0.00 0.00 3.74
637 643 0.106619 AATCGTCTCCCTCCGTAGCT 60.107 55.000 0.00 0.00 0.00 3.32
638 644 0.311477 GAATCGTCTCCCTCCGTAGC 59.689 60.000 0.00 0.00 0.00 3.58
639 645 1.604755 CAGAATCGTCTCCCTCCGTAG 59.395 57.143 0.00 0.00 28.78 3.51
640 646 1.676746 CAGAATCGTCTCCCTCCGTA 58.323 55.000 0.00 0.00 28.78 4.02
641 647 1.668101 GCAGAATCGTCTCCCTCCGT 61.668 60.000 0.00 0.00 28.78 4.69
642 648 1.066587 GCAGAATCGTCTCCCTCCG 59.933 63.158 0.00 0.00 28.78 4.63
643 649 1.443828 GGCAGAATCGTCTCCCTCC 59.556 63.158 0.00 0.00 27.65 4.30
644 650 1.330655 TGGGCAGAATCGTCTCCCTC 61.331 60.000 10.59 0.00 39.84 4.30
645 651 0.909610 TTGGGCAGAATCGTCTCCCT 60.910 55.000 10.59 0.00 39.84 4.20
646 652 0.035439 TTTGGGCAGAATCGTCTCCC 60.035 55.000 0.00 0.00 39.70 4.30
647 653 1.740025 CTTTTGGGCAGAATCGTCTCC 59.260 52.381 0.00 0.00 28.78 3.71
648 654 2.699954 TCTTTTGGGCAGAATCGTCTC 58.300 47.619 0.00 0.00 28.78 3.36
649 655 2.814336 GTTCTTTTGGGCAGAATCGTCT 59.186 45.455 0.00 0.00 32.86 4.18
650 656 2.095212 GGTTCTTTTGGGCAGAATCGTC 60.095 50.000 0.00 0.00 32.86 4.20
651 657 1.886542 GGTTCTTTTGGGCAGAATCGT 59.113 47.619 0.00 0.00 32.86 3.73
652 658 1.135689 CGGTTCTTTTGGGCAGAATCG 60.136 52.381 3.95 3.95 45.66 3.34
653 659 1.202348 CCGGTTCTTTTGGGCAGAATC 59.798 52.381 0.00 0.00 32.86 2.52
654 660 1.256812 CCGGTTCTTTTGGGCAGAAT 58.743 50.000 0.00 0.00 32.86 2.40
655 661 1.460273 GCCGGTTCTTTTGGGCAGAA 61.460 55.000 1.90 0.00 44.91 3.02
656 662 1.901464 GCCGGTTCTTTTGGGCAGA 60.901 57.895 1.90 0.00 44.91 4.26
657 663 2.650778 GCCGGTTCTTTTGGGCAG 59.349 61.111 1.90 0.00 44.91 4.85
659 665 2.774687 TAGGGCCGGTTCTTTTGGGC 62.775 60.000 1.90 0.00 46.84 5.36
660 666 0.251430 TTAGGGCCGGTTCTTTTGGG 60.251 55.000 1.90 0.00 0.00 4.12
661 667 1.623163 TTTAGGGCCGGTTCTTTTGG 58.377 50.000 1.90 0.00 0.00 3.28
662 668 2.159435 CGATTTAGGGCCGGTTCTTTTG 60.159 50.000 1.90 0.00 0.00 2.44
663 669 2.089201 CGATTTAGGGCCGGTTCTTTT 58.911 47.619 1.90 0.00 0.00 2.27
664 670 1.680860 CCGATTTAGGGCCGGTTCTTT 60.681 52.381 1.90 0.00 38.55 2.52
665 671 0.107361 CCGATTTAGGGCCGGTTCTT 60.107 55.000 1.90 0.00 38.55 2.52
666 672 0.979187 TCCGATTTAGGGCCGGTTCT 60.979 55.000 1.90 3.36 43.40 3.01
667 673 0.812811 GTCCGATTTAGGGCCGGTTC 60.813 60.000 1.90 0.00 43.40 3.62
668 674 1.222661 GTCCGATTTAGGGCCGGTT 59.777 57.895 1.90 0.00 43.40 4.44
669 675 1.991167 TGTCCGATTTAGGGCCGGT 60.991 57.895 1.90 0.00 43.40 5.28
670 676 1.523032 GTGTCCGATTTAGGGCCGG 60.523 63.158 0.00 0.00 44.22 6.13
671 677 0.107848 AAGTGTCCGATTTAGGGCCG 60.108 55.000 0.00 0.00 34.30 6.13
672 678 1.065709 TGAAGTGTCCGATTTAGGGCC 60.066 52.381 0.00 0.00 34.30 5.80
673 679 2.007608 GTGAAGTGTCCGATTTAGGGC 58.992 52.381 0.00 0.00 36.18 5.19
674 680 3.328382 TGTGAAGTGTCCGATTTAGGG 57.672 47.619 0.00 0.00 0.00 3.53
675 681 3.551890 CGATGTGAAGTGTCCGATTTAGG 59.448 47.826 0.00 0.00 0.00 2.69
676 682 4.174009 ACGATGTGAAGTGTCCGATTTAG 58.826 43.478 0.00 0.00 0.00 1.85
677 683 4.182693 ACGATGTGAAGTGTCCGATTTA 57.817 40.909 0.00 0.00 0.00 1.40
678 684 3.040147 ACGATGTGAAGTGTCCGATTT 57.960 42.857 0.00 0.00 0.00 2.17
679 685 2.743636 ACGATGTGAAGTGTCCGATT 57.256 45.000 0.00 0.00 0.00 3.34
680 686 2.477357 CGTACGATGTGAAGTGTCCGAT 60.477 50.000 10.44 0.00 0.00 4.18
681 687 1.135888 CGTACGATGTGAAGTGTCCGA 60.136 52.381 10.44 0.00 0.00 4.55
682 688 1.256652 CGTACGATGTGAAGTGTCCG 58.743 55.000 10.44 0.00 0.00 4.79
683 689 0.989890 GCGTACGATGTGAAGTGTCC 59.010 55.000 21.65 0.00 0.00 4.02
684 690 1.693467 TGCGTACGATGTGAAGTGTC 58.307 50.000 21.65 0.00 0.00 3.67
685 691 1.790623 GTTGCGTACGATGTGAAGTGT 59.209 47.619 21.65 0.00 0.00 3.55
686 692 1.790043 TGTTGCGTACGATGTGAAGTG 59.210 47.619 21.65 0.00 0.00 3.16
687 693 2.058798 CTGTTGCGTACGATGTGAAGT 58.941 47.619 21.65 0.00 0.00 3.01
688 694 2.324860 TCTGTTGCGTACGATGTGAAG 58.675 47.619 21.65 8.02 0.00 3.02
689 695 2.324860 CTCTGTTGCGTACGATGTGAA 58.675 47.619 21.65 0.00 0.00 3.18
690 696 1.977188 CTCTGTTGCGTACGATGTGA 58.023 50.000 21.65 8.66 0.00 3.58
691 697 0.366871 GCTCTGTTGCGTACGATGTG 59.633 55.000 21.65 4.45 0.00 3.21
692 698 0.038618 TGCTCTGTTGCGTACGATGT 60.039 50.000 21.65 0.00 35.36 3.06
693 699 1.067693 TTGCTCTGTTGCGTACGATG 58.932 50.000 21.65 3.33 35.36 3.84
694 700 1.459592 GTTTGCTCTGTTGCGTACGAT 59.540 47.619 21.65 0.00 35.36 3.73
695 701 0.856641 GTTTGCTCTGTTGCGTACGA 59.143 50.000 21.65 0.80 35.36 3.43
696 702 0.859232 AGTTTGCTCTGTTGCGTACG 59.141 50.000 11.84 11.84 35.36 3.67
697 703 2.579013 GAGTTTGCTCTGTTGCGTAC 57.421 50.000 0.00 0.00 38.66 3.67
707 713 5.520632 GGTCCAACTTTAAAGAGTTTGCTC 58.479 41.667 21.92 10.30 37.76 4.26
708 714 4.036380 CGGTCCAACTTTAAAGAGTTTGCT 59.964 41.667 21.92 0.00 37.76 3.91
709 715 4.201980 ACGGTCCAACTTTAAAGAGTTTGC 60.202 41.667 21.92 6.98 37.76 3.68
710 716 5.494632 ACGGTCCAACTTTAAAGAGTTTG 57.505 39.130 21.92 14.58 37.76 2.93
711 717 5.066893 GGAACGGTCCAACTTTAAAGAGTTT 59.933 40.000 21.92 3.02 44.26 2.66
712 718 4.577693 GGAACGGTCCAACTTTAAAGAGTT 59.422 41.667 21.92 13.55 44.26 3.01
713 719 4.132336 GGAACGGTCCAACTTTAAAGAGT 58.868 43.478 21.92 6.30 44.26 3.24
714 720 4.744136 GGAACGGTCCAACTTTAAAGAG 57.256 45.455 21.92 12.76 44.26 2.85
726 732 0.601841 AATCGTGTGTGGAACGGTCC 60.602 55.000 14.24 14.24 42.39 4.46
738 744 4.072131 AGCTGACCATGTTTAAATCGTGT 58.928 39.130 0.00 0.00 0.00 4.49
786 792 7.442666 TGTTTGCAACTTTAAAAGTCAAAAGGT 59.557 29.630 0.00 0.00 41.91 3.50
787 793 7.744276 GTGTTTGCAACTTTAAAAGTCAAAAGG 59.256 33.333 0.00 0.00 41.91 3.11
788 794 7.744276 GGTGTTTGCAACTTTAAAAGTCAAAAG 59.256 33.333 0.00 0.00 41.91 2.27
789 795 7.442666 AGGTGTTTGCAACTTTAAAAGTCAAAA 59.557 29.630 0.00 0.00 40.28 2.44
791 797 6.459923 AGGTGTTTGCAACTTTAAAAGTCAA 58.540 32.000 0.00 0.00 40.28 3.18
792 798 6.031751 AGGTGTTTGCAACTTTAAAAGTCA 57.968 33.333 0.00 0.00 40.28 3.41
793 799 6.034577 GTGAGGTGTTTGCAACTTTAAAAGTC 59.965 38.462 0.00 0.00 43.85 3.01
795 801 5.004345 CGTGAGGTGTTTGCAACTTTAAAAG 59.996 40.000 0.00 0.00 43.85 2.27
796 802 4.859798 CGTGAGGTGTTTGCAACTTTAAAA 59.140 37.500 0.00 0.00 43.85 1.52
851 3426 4.464947 CAGGAGGAAGAAAAACTGAGGTT 58.535 43.478 0.00 0.00 37.24 3.50
852 3427 3.748989 GCAGGAGGAAGAAAAACTGAGGT 60.749 47.826 0.00 0.00 0.00 3.85
853 3428 2.816672 GCAGGAGGAAGAAAAACTGAGG 59.183 50.000 0.00 0.00 0.00 3.86
855 3430 2.443255 AGGCAGGAGGAAGAAAAACTGA 59.557 45.455 0.00 0.00 0.00 3.41
856 3431 2.816672 GAGGCAGGAGGAAGAAAAACTG 59.183 50.000 0.00 0.00 0.00 3.16
858 3433 2.816672 CAGAGGCAGGAGGAAGAAAAAC 59.183 50.000 0.00 0.00 0.00 2.43
861 3436 0.326264 GCAGAGGCAGGAGGAAGAAA 59.674 55.000 0.00 0.00 40.72 2.52
862 3437 1.557269 GGCAGAGGCAGGAGGAAGAA 61.557 60.000 0.00 0.00 43.71 2.52
863 3438 1.992277 GGCAGAGGCAGGAGGAAGA 60.992 63.158 0.00 0.00 43.71 2.87
865 3440 2.123632 AGGCAGAGGCAGGAGGAA 59.876 61.111 0.00 0.00 43.71 3.36
866 3441 2.168272 TACAGGCAGAGGCAGGAGGA 62.168 60.000 0.00 0.00 43.71 3.71
867 3442 1.053264 ATACAGGCAGAGGCAGGAGG 61.053 60.000 0.00 0.00 43.71 4.30
869 3444 2.158249 AGATATACAGGCAGAGGCAGGA 60.158 50.000 0.00 0.00 43.71 3.86
870 3445 2.233431 GAGATATACAGGCAGAGGCAGG 59.767 54.545 0.00 0.00 43.71 4.85
871 3446 2.233431 GGAGATATACAGGCAGAGGCAG 59.767 54.545 0.00 0.00 43.71 4.85
872 3447 2.251818 GGAGATATACAGGCAGAGGCA 58.748 52.381 0.00 0.00 43.71 4.75
873 3448 1.203523 CGGAGATATACAGGCAGAGGC 59.796 57.143 0.00 0.00 40.13 4.70
874 3449 1.821753 CCGGAGATATACAGGCAGAGG 59.178 57.143 0.00 0.00 0.00 3.69
876 3451 2.971901 TCCGGAGATATACAGGCAGA 57.028 50.000 0.00 0.00 0.00 4.26
975 4026 1.197036 GTTTCTGCGGTGCTCCTAAAC 59.803 52.381 2.85 5.05 0.00 2.01
980 4031 1.282875 GTTGTTTCTGCGGTGCTCC 59.717 57.895 0.00 0.00 0.00 4.70
1518 4595 2.435586 CGCTTCAGCTCCACCCTG 60.436 66.667 0.00 0.00 39.32 4.45
1754 4831 2.879907 CGTTCCTCCGGCTCGTTA 59.120 61.111 0.00 0.00 0.00 3.18
1779 4856 2.363680 CTCCCTGTCGATGAGCTTGTAT 59.636 50.000 0.00 0.00 0.00 2.29
1828 4917 1.446791 CCTGCTCCTCCTCATGCTC 59.553 63.158 0.00 0.00 0.00 4.26
1833 4922 2.041762 ATGCCCTGCTCCTCCTCA 59.958 61.111 0.00 0.00 0.00 3.86
1980 5113 6.202516 TCCATCCAAAATTCCAAATACGAC 57.797 37.500 0.00 0.00 0.00 4.34
2101 5234 1.514228 GTGCGCGTCGATCTCTTCA 60.514 57.895 8.43 0.00 0.00 3.02
2740 7060 9.613428 AGTACAAACTATGCAATGTGTACATAT 57.387 29.630 22.02 0.00 42.30 1.78
2804 7124 3.293311 GATGCCATACAATGTGCATCC 57.707 47.619 20.04 7.82 46.50 3.51
2819 7139 8.962884 AAATTGTGAAATAATTTAGGGATGCC 57.037 30.769 0.00 0.00 44.27 4.40
2856 7185 6.542821 TCATATTCTCACACCTCCTGTTTTT 58.457 36.000 0.00 0.00 0.00 1.94
2857 7186 6.126863 TCATATTCTCACACCTCCTGTTTT 57.873 37.500 0.00 0.00 0.00 2.43
2858 7187 5.249393 ACTCATATTCTCACACCTCCTGTTT 59.751 40.000 0.00 0.00 0.00 2.83
2859 7188 4.780021 ACTCATATTCTCACACCTCCTGTT 59.220 41.667 0.00 0.00 0.00 3.16
2860 7189 4.357325 ACTCATATTCTCACACCTCCTGT 58.643 43.478 0.00 0.00 0.00 4.00
2861 7190 5.114780 CAACTCATATTCTCACACCTCCTG 58.885 45.833 0.00 0.00 0.00 3.86
2862 7191 4.383552 GCAACTCATATTCTCACACCTCCT 60.384 45.833 0.00 0.00 0.00 3.69
2863 7192 3.873952 GCAACTCATATTCTCACACCTCC 59.126 47.826 0.00 0.00 0.00 4.30
2937 7266 9.661563 AACATTATACTTTCGGTAAGTGATTCA 57.338 29.630 9.90 0.00 46.46 2.57
2967 7296 8.570488 CCATTGCAATATGCTACTCTTTTCATA 58.430 33.333 12.53 0.00 45.31 2.15
3038 7367 1.202533 CCGAATCGCCACACTCCTTAT 60.203 52.381 0.00 0.00 0.00 1.73
3232 7562 8.388589 TCCGGATCCTAATAGTACTCTTATTCA 58.611 37.037 10.75 0.00 0.00 2.57
3236 7566 9.425248 TTTTTCCGGATCCTAATAGTACTCTTA 57.575 33.333 4.15 0.00 0.00 2.10
3261 7591 9.588096 ACATTCTAGGACCTTAGACAAATTTTT 57.412 29.630 0.00 0.00 29.67 1.94
3262 7592 9.232473 GACATTCTAGGACCTTAGACAAATTTT 57.768 33.333 0.00 0.00 29.67 1.82
3263 7593 7.829706 GGACATTCTAGGACCTTAGACAAATTT 59.170 37.037 0.00 0.00 29.67 1.82
3264 7594 7.037586 TGGACATTCTAGGACCTTAGACAAATT 60.038 37.037 0.00 0.00 29.67 1.82
3265 7595 6.443849 TGGACATTCTAGGACCTTAGACAAAT 59.556 38.462 0.00 0.00 29.67 2.32
3317 7647 0.108472 CGAAGATGCTCAGGTGCTCA 60.108 55.000 0.00 0.00 0.00 4.26
3373 7704 0.745845 CCGGGCTCATCTCACTTTGG 60.746 60.000 0.00 0.00 0.00 3.28
3449 7780 4.463891 CCCTTGAGTTTGTTCCAGCATTAT 59.536 41.667 0.00 0.00 0.00 1.28
3488 7819 6.418057 TGAATGTGGCTTTACCTTTTGAAT 57.582 33.333 0.00 0.00 40.22 2.57
3496 7827 2.614057 CGATCCTGAATGTGGCTTTACC 59.386 50.000 0.00 0.00 39.84 2.85
3528 7859 9.476202 AGCTGTAAACTCATTTTTAATTTGGAC 57.524 29.630 0.00 0.00 0.00 4.02
3577 7908 4.413087 CTTACATGTTTCTACTCGCGTCT 58.587 43.478 2.30 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.